Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202000 | AET03852.1 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 1.53e-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202000 | sp|Q9FWT2|UBC16_ARATH | 85.714 | 161 | 23 | 0 | 1 | 161 | 1 | 161 | 2.03e-98 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1202000 | -0.801674 | 8.055310e-49 | -8.615850e-47 |
| Msa0719490 | Msa1202000 | 0.805007 | 1.643117e-49 | -8.615850e-47 |
| Msa0769390 | Msa1202000 | -0.805838 | 1.100181e-49 | -8.615850e-47 |
| Msa0832370 | Msa1202000 | -0.803314 | 3.698151e-49 | -8.615850e-47 |
| Msa0140780 | Msa1202000 | -0.800667 | 1.294303e-48 | -8.615850e-47 |
| Msa0157290 | Msa1202000 | -0.801929 | 7.139811e-49 | -8.615850e-47 |
| Msa0215320 | Msa1202000 | 0.801356 | 9.359293e-49 | -8.615850e-47 |
| Msa0367140 | Msa1202000 | 0.815735 | 7.938067e-52 | -8.615850e-47 |
| Msa0459730 | Msa1202000 | 0.818535 | 1.863445e-52 | -8.615850e-47 |
| Msa1124680 | Msa1202000 | 0.805403 | 1.357907e-49 | -8.615850e-47 |
| Msa1202000 | Msa1257870 | 0.807221 | 5.618741e-50 | -8.615850e-47 |
| Msa1202000 | Msa1271300 | -0.802263 | 6.094238e-49 | -8.615850e-47 |
| Msa1202000 | Msa1295020 | 0.975983 | 5.776911e-141 | -8.615850e-47 |
| Msa1202000 | Msa1330000 | 0.991193 | 2.290510e-186 | -8.615850e-47 |
| Msa1202000 | Msa1346120 | 0.829991 | 3.775932e-55 | -8.615850e-47 |
| Msa0506530 | Msa1202000 | 0.881018 | 3.400863e-70 | -8.615850e-47 |
| Msa0880140 | Msa1202000 | -0.800400 | 1.467062e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202000 | MtrunA17_Chr8g0372391 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 1.41e-120 | 336 |
| Msa1202000 | MtrunA17_Chr5g0404931 | 88.199 | 161 | 19 | 0 | 1 | 161 | 1 | 161 | 3.40e-101 | 287 |
| Msa1202000 | MtrunA17_Chr7g0275361 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 1.82e-23 | 90.1 |
| Msa1202000 | MtrunA17_Chr8g0369311 | 40.708 | 113 | 65 | 2 | 14 | 125 | 56 | 167 | 4.41e-23 | 90.5 |
| Msa1202000 | MtrunA17_Chr1g0154011 | 41.071 | 112 | 64 | 2 | 15 | 125 | 1 | 111 | 1.35e-22 | 87.8 |
| Msa1202000 | MtrunA17_Chr4g0037011 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 2.49e-22 | 87.0 |
| Msa1202000 | MtrunA17_Chr3g0108261 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 3.15e-22 | 86.7 |
| Msa1202000 | MtrunA17_Chr5g0432831 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 1.34e-21 | 85.1 |
| Msa1202000 | MtrunA17_Chr8g0378601 | 34.821 | 112 | 71 | 2 | 16 | 126 | 23 | 133 | 1.01e-19 | 80.9 |
| Msa1202000 | MtrunA17_Chr8g0362321 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.14e-19 | 79.7 |
| Msa1202000 | MtrunA17_Chr4g0060351 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.65e-19 | 79.3 |
| Msa1202000 | MtrunA17_Chr4g0038891 | 37.037 | 108 | 66 | 2 | 19 | 125 | 36 | 142 | 2.27e-18 | 77.4 |
| Msa1202000 | MtrunA17_Chr2g0316201 | 37.615 | 109 | 66 | 2 | 19 | 126 | 9 | 116 | 2.94e-18 | 76.6 |
| Msa1202000 | MtrunA17_Chr5g0396451 | 36.111 | 108 | 67 | 2 | 19 | 125 | 36 | 142 | 5.15e-18 | 76.6 |
| Msa1202000 | MtrunA17_Chr2g0316211 | 36.697 | 109 | 67 | 2 | 19 | 126 | 9 | 116 | 6.53e-18 | 75.9 |
| Msa1202000 | MtrunA17_Chr1g0199951 | 38.938 | 113 | 60 | 3 | 17 | 124 | 43 | 151 | 9.10e-18 | 76.3 |
| Msa1202000 | MtrunA17_Chr3g0131871 | 37.190 | 121 | 69 | 5 | 19 | 135 | 6 | 123 | 3.74e-17 | 74.7 |
| Msa1202000 | MtrunA17_Chr3g0139901 | 35.135 | 111 | 67 | 3 | 19 | 125 | 7 | 116 | 2.19e-16 | 72.0 |
| Msa1202000 | MtrunA17_Chr4g0031181 | 35.714 | 112 | 56 | 3 | 30 | 126 | 19 | 129 | 2.95e-16 | 71.6 |
| Msa1202000 | MtrunA17_Chr2g0328001 | 31.206 | 141 | 69 | 5 | 30 | 143 | 19 | 158 | 9.93e-15 | 67.8 |
| Msa1202000 | MtrunA17_Chr5g0401831 | 33.884 | 121 | 71 | 3 | 12 | 124 | 1 | 120 | 1.21e-14 | 67.4 |
| Msa1202000 | MtrunA17_Chr4g0053191 | 33.884 | 121 | 71 | 3 | 12 | 124 | 1 | 120 | 2.07e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1202000 | AT1G75440.1 | 85.714 | 161 | 23 | 0 | 1 | 161 | 1 | 161 | 2.06e-99 | 283 |
| Msa1202000 | AT5G42990.1 | 86.335 | 161 | 22 | 0 | 1 | 161 | 1 | 161 | 2.57e-98 | 280 |
| Msa1202000 | AT1G45050.1 | 85.714 | 161 | 23 | 0 | 1 | 161 | 1 | 161 | 5.85e-98 | 280 |
| Msa1202000 | AT4G36410.1 | 78.882 | 161 | 34 | 0 | 1 | 161 | 1 | 161 | 1.31e-92 | 266 |
| Msa1202000 | AT1G45050.2 | 79.412 | 102 | 21 | 0 | 1 | 102 | 1 | 102 | 3.60e-59 | 180 |
| Msa1202000 | AT3G08690.2 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 1.05e-22 | 88.2 |
| Msa1202000 | AT3G08690.1 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 1.05e-22 | 88.2 |
| Msa1202000 | AT5G41700.4 | 38.938 | 113 | 66 | 2 | 15 | 125 | 1 | 112 | 4.96e-22 | 86.7 |
| Msa1202000 | AT5G53300.2 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 6.61e-22 | 86.3 |
| Msa1202000 | AT5G53300.4 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 6.61e-22 | 86.3 |
| Msa1202000 | AT5G53300.1 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 6.61e-22 | 86.3 |
| Msa1202000 | AT5G56150.1 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 8.46e-22 | 85.9 |
| Msa1202000 | AT2G16740.1 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 8.93e-22 | 85.9 |
| Msa1202000 | AT4G27960.1 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 1.48e-21 | 85.5 |
| Msa1202000 | AT5G41700.5 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 2.13e-21 | 85.1 |
| Msa1202000 | AT5G41700.2 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 2.13e-21 | 85.1 |
| Msa1202000 | AT5G41700.1 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 2.13e-21 | 85.1 |
| Msa1202000 | AT1G64230.2 | 37.500 | 112 | 68 | 2 | 15 | 125 | 1 | 111 | 2.40e-21 | 84.7 |
| Msa1202000 | AT1G64230.1 | 37.500 | 112 | 68 | 2 | 15 | 125 | 1 | 111 | 2.40e-21 | 84.7 |
| Msa1202000 | AT4G27960.2 | 36.752 | 117 | 72 | 2 | 10 | 125 | 26 | 141 | 2.94e-21 | 85.5 |
| Msa1202000 | AT1G64230.3 | 35.537 | 121 | 67 | 2 | 15 | 125 | 1 | 120 | 2.24e-20 | 82.8 |
| Msa1202000 | AT1G14400.1 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.36e-19 | 79.7 |
| Msa1202000 | AT1G14400.2 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.36e-19 | 79.7 |
| Msa1202000 | AT2G02760.1 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1202000 | AT2G02760.2 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1202000 | AT2G02760.4 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1202000 | AT2G02760.3 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1202000 | AT5G53300.3 | 38.835 | 103 | 61 | 2 | 15 | 116 | 1 | 102 | 4.62e-19 | 77.8 |
| Msa1202000 | AT5G56150.2 | 37.500 | 112 | 67 | 3 | 15 | 125 | 1 | 110 | 4.92e-19 | 77.8 |
| Msa1202000 | AT5G50870.1 | 37.778 | 135 | 74 | 6 | 15 | 142 | 2 | 133 | 6.93e-19 | 79.7 |
| Msa1202000 | AT5G41700.3 | 37.143 | 105 | 64 | 2 | 15 | 118 | 1 | 104 | 1.38e-18 | 77.8 |
| Msa1202000 | AT3G08700.2 | 36.283 | 113 | 69 | 2 | 15 | 125 | 1 | 112 | 3.69e-18 | 76.6 |
| Msa1202000 | AT3G08700.1 | 36.283 | 113 | 69 | 2 | 15 | 125 | 1 | 112 | 3.69e-18 | 76.6 |
| Msa1202000 | AT1G78870.2 | 37.615 | 109 | 66 | 2 | 19 | 126 | 9 | 116 | 3.72e-18 | 76.6 |
| Msa1202000 | AT5G50870.2 | 38.400 | 125 | 70 | 5 | 15 | 135 | 2 | 123 | 6.33e-18 | 77.4 |
| Msa1202000 | AT1G16890.2 | 36.697 | 109 | 67 | 2 | 19 | 126 | 9 | 116 | 1.94e-17 | 74.7 |
| Msa1202000 | AT3G13550.2 | 33.065 | 124 | 80 | 3 | 2 | 124 | 24 | 145 | 2.46e-17 | 75.1 |
| Msa1202000 | AT3G13550.1 | 33.065 | 124 | 80 | 3 | 2 | 124 | 24 | 145 | 2.55e-17 | 75.1 |
| Msa1202000 | AT1G16890.3 | 39.535 | 86 | 51 | 1 | 41 | 126 | 41 | 125 | 5.32e-17 | 73.9 |
| Msa1202000 | AT5G62540.1 | 38.182 | 110 | 66 | 2 | 16 | 124 | 5 | 113 | 6.05e-17 | 73.6 |
| Msa1202000 | AT3G55380.1 | 33.083 | 133 | 71 | 5 | 31 | 148 | 21 | 150 | 1.69e-16 | 72.8 |
| Msa1202000 | AT1G64230.5 | 37.931 | 87 | 53 | 1 | 39 | 125 | 68 | 153 | 2.62e-16 | 72.8 |
| Msa1202000 | AT1G64230.4 | 37.931 | 87 | 53 | 1 | 39 | 125 | 68 | 153 | 2.62e-16 | 72.8 |
| Msa1202000 | AT1G16890.1 | 41.772 | 79 | 45 | 1 | 48 | 126 | 6 | 83 | 2.83e-16 | 70.9 |
| Msa1202000 | AT1G78870.4 | 41.772 | 79 | 45 | 1 | 48 | 126 | 6 | 83 | 3.11e-16 | 70.9 |
| Msa1202000 | AT1G78870.3 | 36.190 | 105 | 65 | 2 | 19 | 122 | 9 | 112 | 3.60e-16 | 70.5 |
| Msa1202000 | AT5G25760.1 | 37.647 | 85 | 51 | 2 | 42 | 125 | 33 | 116 | 2.95e-15 | 69.3 |
| Msa1202000 | AT5G25760.2 | 37.647 | 85 | 51 | 2 | 42 | 125 | 33 | 116 | 2.95e-15 | 69.3 |
| Msa1202000 | AT3G20060.1 | 34.259 | 108 | 69 | 2 | 19 | 125 | 40 | 146 | 3.13e-15 | 69.7 |
| Msa1202000 | AT3G57870.1 | 31.915 | 141 | 86 | 4 | 13 | 145 | 3 | 141 | 3.42e-15 | 69.3 |
| Msa1202000 | AT5G59300.1 | 33.083 | 133 | 71 | 5 | 30 | 147 | 19 | 148 | 3.67e-15 | 69.3 |
| Msa1202000 | AT1G78870.1 | 47.692 | 65 | 33 | 1 | 62 | 126 | 21 | 84 | 6.90e-15 | 67.4 |
| Msa1202000 | AT3G46460.1 | 33.036 | 112 | 59 | 3 | 30 | 126 | 19 | 129 | 5.05e-14 | 66.2 |
| Msa1202000 | AT1G36340.2 | 37.662 | 77 | 47 | 1 | 40 | 116 | 33 | 108 | 1.31e-13 | 65.1 |
| Msa1202000 | AT1G36340.1 | 37.662 | 77 | 47 | 1 | 40 | 116 | 33 | 108 | 1.31e-13 | 65.1 |
| Msa1202000 | AT3G20060.2 | 36.471 | 85 | 53 | 1 | 41 | 125 | 18 | 101 | 1.64e-13 | 64.3 |
| Msa1202000 | AT3G24515.1 | 33.058 | 121 | 66 | 4 | 19 | 125 | 10 | 129 | 3.57e-13 | 66.2 |
| Msa1202000 | AT3G24515.3 | 34.737 | 95 | 57 | 2 | 35 | 125 | 61 | 154 | 4.13e-13 | 66.2 |
| Msa1202000 | AT1G50490.1 | 36.471 | 85 | 53 | 1 | 41 | 125 | 62 | 145 | 5.81e-13 | 63.9 |
| Msa1202000 | AT5G05080.2 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1202000 | AT5G05080.3 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1202000 | AT5G05080.1 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1202000 | AT5G05080.4 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1202000 | AT2G46030.4 | 34.375 | 96 | 61 | 2 | 39 | 133 | 28 | 122 | 1.47e-11 | 60.1 |
| Msa1202000 | AT2G46030.2 | 34.375 | 96 | 61 | 2 | 39 | 133 | 28 | 122 | 1.47e-11 | 60.1 |
| Msa1202000 | AT3G55380.2 | 31.250 | 112 | 59 | 4 | 31 | 125 | 21 | 131 | 1.86e-11 | 60.1 |
| Msa1202000 | AT2G46030.5 | 34.375 | 96 | 61 | 2 | 39 | 133 | 25 | 119 | 2.18e-11 | 59.7 |
| Msa1202000 | AT2G46030.1 | 34.375 | 96 | 61 | 2 | 39 | 133 | 25 | 119 | 2.18e-11 | 59.7 |
| Msa1202000 | AT2G46030.3 | 34.375 | 96 | 61 | 2 | 39 | 133 | 97 | 191 | 2.98e-11 | 60.1 |
Find 68 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGTATAATTCCAATTTAC+AGG | 0.252995 | 8_1:+55341670 | None:intergenic |
| CAGATATATTGTATGATTCT+TGG | 0.253321 | 8_1:-55342139 | Msa1202000:CDS |
| GAGATTTGCTAAGCGTTTAA+AGG | 0.262512 | 8_1:+55341692 | None:intergenic |
| TTAGCAAATCTCCTGTAAAT+TGG | 0.287060 | 8_1:-55341681 | Msa1202000:three_prime_UTR |
| TAGAAAGAAATGCAATAAAA+AGG | 0.309566 | 8_1:+55341584 | None:intergenic |
| AAGCTCTTTCTGAAGCCTAT+TGG | 0.327124 | 8_1:+55345564 | None:intergenic |
| TATGCCCGTTGCTATAGATA+TGG | 0.337664 | 8_1:+55344401 | None:intergenic |
| AGAGGATTATCCTTTCAAAA+AGG | 0.343593 | 8_1:-55341757 | Msa1202000:three_prime_UTR |
| AGCAACGGGCATATTTGTTT+AGG | 0.346582 | 8_1:-55344391 | Msa1202000:intron |
| CAAGTTAAACACAATATTCC+AGG | 0.359877 | 8_1:+55341624 | None:intergenic |
| GCTTCCATTGGGTAGTGCTC+TGG | 0.361113 | 8_1:+55344540 | None:intergenic |
| TAACTTGCATGTCTGATAAC+TGG | 0.376605 | 8_1:-55341608 | Msa1202000:three_prime_UTR |
| TATAGATATGGGGATGCATT+GGG | 0.389000 | 8_1:+55344413 | None:intergenic |
| TGATGATAAAGTATAATAAC+TGG | 0.404464 | 8_1:-55341803 | Msa1202000:exon |
| GCAGGTCATATTTATGAATC+CGG | 0.407342 | 8_1:-55344437 | Msa1202000:intron |
| GAACCACCATCTTGTCTCCT+TGG | 0.413844 | 8_1:+55341828 | None:intergenic |
| TAATGAGACCTACAAGCTTC+AGG | 0.415036 | 8_1:-55344571 | Msa1202000:CDS |
| ACATAGCGGTCATTATCTTC+AGG | 0.421373 | 8_1:+55341877 | None:intergenic |
| ATACCTCATTTGATAGTATG+AGG | 0.431549 | 8_1:-55341654 | Msa1202000:three_prime_UTR |
| AGGTGGGTTATTGAAGTGAT+TGG | 0.437592 | 8_1:-55344615 | Msa1202000:CDS |
| GTTATTATACTTTATCATCA+TGG | 0.446022 | 8_1:+55341806 | None:intergenic |
| ATTGAAGTGATTGGAGCTCC+TGG | 0.452007 | 8_1:-55344606 | Msa1202000:CDS |
| ATGCCCGTTGCTATAGATAT+GGG | 0.454921 | 8_1:+55344402 | None:intergenic |
| CAATAGATTCACACCTTAGC+GGG | 0.456428 | 8_1:+55342056 | None:intergenic |
| CACACCTGTGGAGCTTCCAT+TGG | 0.457138 | 8_1:+55344528 | None:intergenic |
| TATGTAAAGAACTGTAGAAA+TGG | 0.460561 | 8_1:-55341859 | Msa1202000:CDS |
| GAAATCGACCTGAAGCTTGT+AGG | 0.464209 | 8_1:+55344563 | None:intergenic |
| AACCACCATCTTGTCTCCTT+GGG | 0.464987 | 8_1:+55341829 | None:intergenic |
| ATACGCTCTCTTTCTCTCTT+CGG | 0.473604 | 8_1:-55345758 | Msa1202000:five_prime_UTR |
| TTTCCTCATACTATCAAATG+AGG | 0.476076 | 8_1:+55341651 | None:intergenic |
| CTTCCATTGGGTAGTGCTCT+GGG | 0.477576 | 8_1:+55344541 | None:intergenic |
| GATAAATATCAAGTGGAGAA+AGG | 0.491535 | 8_1:-55341735 | Msa1202000:three_prime_UTR |
| TCAGTAAGATTGCCTCCAAT+AGG | 0.493969 | 8_1:-55345579 | Msa1202000:CDS |
| ATCCCCATATCTATAGCAAC+GGG | 0.499127 | 8_1:-55344405 | Msa1202000:CDS |
| CTATAGATATGGGGATGCAT+TGG | 0.503027 | 8_1:+55344412 | None:intergenic |
| AACCTTGCGAGAGGAGTTTG+AGG | 0.504445 | 8_1:+55345684 | None:intergenic |
| TTCAGAAAGAGCTTGTTGAA+TGG | 0.507529 | 8_1:-55345555 | Msa1202000:CDS |
| AATTCACAAAACTAGAATAG+AGG | 0.513456 | 8_1:-55341775 | Msa1202000:three_prime_UTR |
| ACACCTGTGGAGCTTCCATT+GGG | 0.516280 | 8_1:+55344529 | None:intergenic |
| CTACCCAATGGAAGCTCCAC+AGG | 0.520734 | 8_1:-55344532 | Msa1202000:intron |
| CTCTTTCTGAAGCCTATTGG+AGG | 0.524946 | 8_1:+55345567 | None:intergenic |
| GCTCTCAAGCTCACCCGCTA+AGG | 0.526760 | 8_1:-55342069 | Msa1202000:intron |
| ATATGGGGATGCATTGGGGC+CGG | 0.528834 | 8_1:+55344418 | None:intergenic |
| TGGCAGATTAATCCTCCTGC+TGG | 0.536569 | 8_1:-55345535 | Msa1202000:CDS |
| ACTTTGTAGTTGAAACCAGC+AGG | 0.537627 | 8_1:+55345520 | None:intergenic |
| TTGAAGTGATTGGAGCTCCT+GGG | 0.553217 | 8_1:-55344605 | Msa1202000:CDS |
| GGAGTTTGAGGAGCTAGTCA+TGG | 0.555231 | 8_1:+55345696 | None:intergenic |
| ACAGAACTAACAGTCATGGC+AGG | 0.555931 | 8_1:+55342113 | None:intergenic |
| TCATTAGCATAAAGTGTCCC+AGG | 0.566179 | 8_1:+55344588 | None:intergenic |
| CATCCCCATATCTATAGCAA+CGG | 0.583782 | 8_1:-55344406 | Msa1202000:CDS |
| GCGCACACGAAAGGCACACA+TGG | 0.588846 | 8_1:+55341550 | None:intergenic |
| GATCTCCCAAGGAGACAAGA+TGG | 0.604293 | 8_1:-55341834 | Msa1202000:CDS |
| AAGAGAGAAAGAGAGCGTAT+CGG | 0.605002 | 8_1:+55345761 | None:intergenic |
| CTCCTCAAACTCCTCTCGCA+AGG | 0.605700 | 8_1:-55345686 | Msa1202000:intron |
| CAGAACTAACAGTCATGGCA+GGG | 0.607603 | 8_1:+55342114 | None:intergenic |
| ATAGTATGAGGAAACAAACC+TGG | 0.609062 | 8_1:-55341642 | Msa1202000:three_prime_UTR |
| TTTCCCAGAGCACTACCCAA+TGG | 0.620641 | 8_1:-55344544 | Msa1202000:CDS |
| GCATACAGAACTAACAGTCA+TGG | 0.628207 | 8_1:+55342109 | None:intergenic |
| TAGAAATGGAAGATCTCCCA+AGG | 0.637128 | 8_1:-55341845 | Msa1202000:CDS |
| AAGTCAGCGATAATCTCCAA+AGG | 0.650491 | 8_1:-55345501 | Msa1202000:intron |
| TGCCCGTTGCTATAGATATG+GGG | 0.651617 | 8_1:+55344403 | None:intergenic |
| ACAATAGATTCACACCTTAG+CGG | 0.657902 | 8_1:+55342055 | None:intergenic |
| TTCTACAGTTCTTTACATAG+CGG | 0.660849 | 8_1:+55341863 | None:intergenic |
| AGAACTAACAGTCATGGCAG+GGG | 0.663437 | 8_1:+55342115 | None:intergenic |
| GGAGAAACAAACCTTGCGAG+AGG | 0.668074 | 8_1:+55345675 | None:intergenic |
| TTGTAGTTGAAACCAGCAGG+AGG | 0.668493 | 8_1:+55345523 | None:intergenic |
| ATAGATATGGGGATGCATTG+GGG | 0.673293 | 8_1:+55344414 | None:intergenic |
| CTCCCAAGGAGACAAGATGG+TGG | 0.709505 | 8_1:-55341831 | Msa1202000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAATAGAATAAAAAAA+AGG | + | chr8_1:55341713-55341732 | None:intergenic | 10.0% |
| !!! | TTTATTCGAATTTTTGAAAT+TGG | - | chr8_1:55341946-55341965 | Msa1202000:intron | 15.0% |
| !!! | ATTAGGTTTTTTGATTTTTT+TGG | - | chr8_1:55342032-55342051 | Msa1202000:intron | 15.0% |
| !!! | ATCAAATTTTTATATCGATT+TGG | + | chr8_1:55342640-55342659 | None:intergenic | 15.0% |
| !!! | TCAAAATATCATTTTTCTTA+CGG | - | chr8_1:55342681-55342700 | Msa1202000:intron | 15.0% |
| !! | TAAAAATTGTTAGAAAAACA+TGG | - | chr8_1:55343599-55343618 | Msa1202000:intron | 15.0% |
| !!! | TCAACAATATTTTCTATAAA+AGG | + | chr8_1:55343861-55343880 | None:intergenic | 15.0% |
| !! | ATAATAATTTCTCCAAATTT+AGG | + | chr8_1:55344359-55344378 | None:intergenic | 15.0% |
| !!! | ATTTTTCTAATATTAAGAGA+TGG | - | chr8_1:55344713-55344732 | Msa1202000:intron | 15.0% |
| !!! | AGTCAGTTTATTTTTTTATA+TGG | - | chr8_1:55344817-55344836 | Msa1202000:intron | 15.0% |
| !!! | AAGATAATTATTTTCAAAAC+AGG | + | chr8_1:55344867-55344886 | None:intergenic | 15.0% |
| !!! | TGTTTTGAAAATAATTATCT+TGG | - | chr8_1:55344866-55344885 | Msa1202000:intron | 15.0% |
| !!! | AATTTTTGAAATTGGTGAAA+TGG | - | chr8_1:55341954-55341973 | Msa1202000:intron | 20.0% |
| !!! | ATTTTTGAAATTGGTGAAAT+GGG | - | chr8_1:55341955-55341974 | Msa1202000:intron | 20.0% |
| !! | AAAAAACAAAACTTGAAAAG+AGG | + | chr8_1:55342010-55342029 | None:intergenic | 20.0% |
| !!! | CAAGTTTTGTTTTTTAGATT+AGG | - | chr8_1:55342015-55342034 | Msa1202000:intron | 20.0% |
| !! | AAAAAAAACTGACATCAAAT+TGG | - | chr8_1:55342080-55342099 | Msa1202000:CDS | 20.0% |
| !! | GATGATTAATGAATATAACA+AGG | - | chr8_1:55342154-55342173 | Msa1202000:intron | 20.0% |
| !!! | TCATTTTCTCAGATTATTAT+TGG | + | chr8_1:55342268-55342287 | None:intergenic | 20.0% |
| !! | AAATATACACTTGAAAATTG+TGG | + | chr8_1:55342400-55342419 | None:intergenic | 20.0% |
| !!! | AACACAATTTTGATGATTAA+TGG | - | chr8_1:55342459-55342478 | Msa1202000:intron | 20.0% |
| !!! | AATTTTTATATCGATTTGGA+TGG | + | chr8_1:55342636-55342655 | None:intergenic | 20.0% |
| !!! | TTATTGACAGTTTGTTATTT+TGG | - | chr8_1:55342704-55342723 | Msa1202000:intron | 20.0% |
| !! | CATATTTATGATTAAGGATT+TGG | - | chr8_1:55342879-55342898 | Msa1202000:intron | 20.0% |
| !! | AACTAAATTTATTCTCATGT+TGG | + | chr8_1:55343733-55343752 | None:intergenic | 20.0% |
| !! | TGAAACATCAATATTTCATT+TGG | + | chr8_1:55344637-55344656 | None:intergenic | 20.0% |
| !! | TTTGAAAATAATTATCTTGG+TGG | - | chr8_1:55344869-55344888 | Msa1202000:intron | 20.0% |
| !! | TAATCATCAAATTCACAAAA+TGG | + | chr8_1:55345004-55345023 | None:intergenic | 20.0% |
| !!! | ATTTTGTGAATTTGATGATT+AGG | - | chr8_1:55345003-55345022 | Msa1202000:intron | 20.0% |
| !! | TATTCTCTATTATTATGACA+AGG | + | chr8_1:55345037-55345056 | None:intergenic | 20.0% |
| !! | ATAGAGAATAATATTCTCAT+TGG | - | chr8_1:55345047-55345066 | Msa1202000:intron | 20.0% |
| !! | AATTATACCGAAAAAACAAA+AGG | + | chr8_1:55345333-55345352 | None:intergenic | 20.0% |
| !!! | AAATTGATATCTAAAACCAT+TGG | + | chr8_1:55345414-55345433 | None:intergenic | 20.0% |
| !! | GTTATTATACTTTATCATCA+TGG | + | chr8_1:55345546-55345565 | None:intergenic | 20.0% |
| !! | TGATGATAAAGTATAATAAC+TGG | - | chr8_1:55345546-55345565 | Msa1202000:CDS | 20.0% |
| !!! | TGATATTTATCCTTTTTGAA+AGG | + | chr8_1:55345605-55345624 | None:intergenic | 20.0% |
| !! | TAGAAAGAAATGCAATAAAA+AGG | + | chr8_1:55345768-55345787 | None:intergenic | 20.0% |
| ! | AAAAAAGGAAGAGATGAAAA+GGG | + | chr8_1:55341698-55341717 | None:intergenic | 25.0% |
| ! | AAAAAAAGGAAGAGATGAAA+AGG | + | chr8_1:55341699-55341718 | None:intergenic | 25.0% |
| !!! | AGCATTGATATATATACCTT+TGG | + | chr8_1:55341867-55341886 | None:intergenic | 25.0% |
| ! | ATCAAATTGGACAAATTAGA+TGG | - | chr8_1:55342093-55342112 | Msa1202000:CDS | 25.0% |
| ! | GTTAATACAATTCAAATACG+TGG | - | chr8_1:55342115-55342134 | Msa1202000:CDS | 25.0% |
| ! | TAATGAATACAACAAAGTGA+TGG | + | chr8_1:55342563-55342582 | None:intergenic | 25.0% |
| !!! | TTTGTTATTTTGGTTCTCAA+AGG | - | chr8_1:55342714-55342733 | Msa1202000:intron | 25.0% |
| ! | TACAGGCATATTTATGATTA+AGG | - | chr8_1:55342873-55342892 | Msa1202000:intron | 25.0% |
| ! | TTTATGATTAAGGATTTGGA+TGG | - | chr8_1:55342883-55342902 | Msa1202000:intron | 25.0% |
| ! | ATAATCTCATTAGAGTTCAA+AGG | - | chr8_1:55343061-55343080 | Msa1202000:intron | 25.0% |
| ! | TAATCTCATTAGAGTTCAAA+GGG | - | chr8_1:55343062-55343081 | Msa1202000:intron | 25.0% |
| ! | TACTGCAACTTGAAATTAAT+GGG | - | chr8_1:55343159-55343178 | Msa1202000:intron | 25.0% |
| ! | AAATGACTTTGAATATCCAA+AGG | - | chr8_1:55343623-55343642 | Msa1202000:intron | 25.0% |
| !! | ATATTAATGCTTTGATAGTC+TGG | - | chr8_1:55344176-55344195 | Msa1202000:intron | 25.0% |
| !! | AAATTGCAAACAAGATTTTC+AGG | + | chr8_1:55344281-55344300 | None:intergenic | 25.0% |
| ! | ATCAAAATCAAAATACATGG+TGG | + | chr8_1:55344424-55344443 | None:intergenic | 25.0% |
| ! | TGCATCAAAATCAAAATACA+TGG | + | chr8_1:55344427-55344446 | None:intergenic | 25.0% |
| ! | TCATAATATCTAGATGAGAA+GGG | + | chr8_1:55344789-55344808 | None:intergenic | 25.0% |
| ! | ATCAAATTCACAAAATGGAA+AGG | + | chr8_1:55344999-55345018 | None:intergenic | 25.0% |
| ! | GAAGATCATTGTAATTTGAT+TGG | - | chr8_1:55345086-55345105 | Msa1202000:intron | 25.0% |
| ! | TGATCAATCATGTTATTACT+TGG | + | chr8_1:55345140-55345159 | None:intergenic | 25.0% |
| ! | AAGTAATAACATGATTGATC+AGG | - | chr8_1:55345139-55345158 | Msa1202000:intron | 25.0% |
| ! | AGTAATAACATGATTGATCA+GGG | - | chr8_1:55345140-55345159 | Msa1202000:intron | 25.0% |
| ! | CAGATATATTGTATGATTCT+TGG | - | chr8_1:55345210-55345229 | Msa1202000:intron | 25.0% |
| ! | ATCAATTTACTTAACAACTC+TGG | - | chr8_1:55345426-55345445 | Msa1202000:intron | 25.0% |
| ! | TATGTAAAGAACTGTAGAAA+TGG | - | chr8_1:55345490-55345509 | Msa1202000:intron | 25.0% |
| ! | AATTCACAAAACTAGAATAG+AGG | - | chr8_1:55345574-55345593 | Msa1202000:CDS | 25.0% |
| ! | CAAAAAGGATAAATATCAAG+TGG | - | chr8_1:55345607-55345626 | Msa1202000:intron | 25.0% |
| AAACTAAGGAAGAGATGAAT+TGG | + | chr8_1:55341743-55341762 | None:intergenic | 30.0% | |
| !! | TTACTGAGATTCTGAAACTA+AGG | + | chr8_1:55341757-55341776 | None:intergenic | 30.0% |
| ACATATATAACCACATGTGT+TGG | - | chr8_1:55342287-55342306 | Msa1202000:intron | 30.0% | |
| CATTCAAAATTGAGGTTAGA+TGG | + | chr8_1:55342370-55342389 | None:intergenic | 30.0% | |
| ! | TTAATGGATATGTGAACACT+TGG | - | chr8_1:55342475-55342494 | Msa1202000:intron | 30.0% |
| AACAACATTCAAAATCATCG+TGG | - | chr8_1:55342509-55342528 | Msa1202000:intron | 30.0% | |
| !!! | TTATTTTGGTTCTCAAAGGT+GGG | - | chr8_1:55342718-55342737 | Msa1202000:intron | 30.0% |
| TGTAATAAGCCATTGGATTA+AGG | - | chr8_1:55342842-55342861 | Msa1202000:intron | 30.0% | |
| AACGAAAATCCTTAATCCAA+TGG | + | chr8_1:55342854-55342873 | None:intergenic | 30.0% | |
| ! | TGCTATTTACTTTGTTTCAG+AGG | - | chr8_1:55342990-55343009 | Msa1202000:intron | 30.0% |
| GTACTGCAACTTGAAATTAA+TGG | - | chr8_1:55343158-55343177 | Msa1202000:intron | 30.0% | |
| TTGAAATTAATGGGATGAAG+TGG | - | chr8_1:55343168-55343187 | Msa1202000:intron | 30.0% | |
| AGAAAGAGACAAAGTGAAAA+AGG | + | chr8_1:55343392-55343411 | None:intergenic | 30.0% | |
| ! | TTTTCACTTTGTCTCTTTCT+TGG | - | chr8_1:55343392-55343411 | Msa1202000:intron | 30.0% |
| TTGTATTCGTTAGCGTTTAT+TGG | - | chr8_1:55343447-55343466 | Msa1202000:intron | 30.0% | |
| TATTTCTTCGTTGTTCATTG+TGG | - | chr8_1:55343535-55343554 | Msa1202000:intron | 30.0% | |
| TGTGAATATGATGACTTGAA+GGG | + | chr8_1:55343567-55343586 | None:intergenic | 30.0% | |
| ATGTGAATATGATGACTTGA+AGG | + | chr8_1:55343568-55343587 | None:intergenic | 30.0% | |
| TTGTTGAATCTCTACTTAGA+AGG | - | chr8_1:55343874-55343893 | Msa1202000:intron | 30.0% | |
| AATCTCTACTTAGAAGGTTT+GGG | - | chr8_1:55343880-55343899 | Msa1202000:intron | 30.0% | |
| CTTCCTCTACCTAAAAAATT+GGG | + | chr8_1:55343965-55343984 | None:intergenic | 30.0% | |
| TCTTCCTCTACCTAAAAAAT+TGG | + | chr8_1:55343966-55343985 | None:intergenic | 30.0% | |
| AAATTCCGGAGAAATTTGTA+TGG | + | chr8_1:55344519-55344538 | None:intergenic | 30.0% | |
| TCAACTACAAGCTAAAATTC+CGG | + | chr8_1:55344533-55344552 | None:intergenic | 30.0% | |
| TGTTTCTTCCTATCTATTCA+GGG | - | chr8_1:55344568-55344587 | Msa1202000:CDS | 30.0% | |
| ATTTGAAGATATATCGTCCA+TGG | - | chr8_1:55344656-55344675 | Msa1202000:intron | 30.0% | |
| CAATAAAATTTGACCAACCA+TGG | + | chr8_1:55344676-55344695 | None:intergenic | 30.0% | |
| TTCTATCTGTGAATTGTTAG+TGG | - | chr8_1:55344741-55344760 | Msa1202000:intron | 30.0% | |
| CATAATATCTAGATGAGAAG+GGG | + | chr8_1:55344788-55344807 | None:intergenic | 30.0% | |
| CTCATAATATCTAGATGAGA+AGG | + | chr8_1:55344790-55344809 | None:intergenic | 30.0% | |
| TCTCATCTAGATATTATGAG+TGG | - | chr8_1:55344790-55344809 | Msa1202000:intron | 30.0% | |
| ! | TATCTTGGTGGTTAATAATC+TGG | - | chr8_1:55344881-55344900 | Msa1202000:intron | 30.0% |
| !! | TTGGTTTTTGTGTACTATAC+TGG | - | chr8_1:55345105-55345124 | Msa1202000:intron | 30.0% |
| TTCTACAGTTCTTTACATAG+CGG | + | chr8_1:55345489-55345508 | None:intergenic | 30.0% | |
| AGAGGATTATCCTTTCAAAA+AGG | - | chr8_1:55345592-55345611 | Msa1202000:intron | 30.0% | |
| GATAAATATCAAGTGGAGAA+AGG | - | chr8_1:55345614-55345633 | Msa1202000:intron | 30.0% | |
| TTAGCAAATCTCCTGTAAAT+TGG | - | chr8_1:55345668-55345687 | Msa1202000:intron | 30.0% | |
| GAGGTATAATTCCAATTTAC+AGG | + | chr8_1:55345682-55345701 | None:intergenic | 30.0% | |
| ! | ATACCTCATTTGATAGTATG+AGG | - | chr8_1:55345695-55345714 | Msa1202000:CDS | 30.0% |
| TTTCCTCATACTATCAAATG+AGG | + | chr8_1:55345701-55345720 | None:intergenic | 30.0% | |
| CAAGTTAAACACAATATTCC+AGG | + | chr8_1:55345728-55345747 | None:intergenic | 30.0% | |
| !! | TTCAGAAAGAGCTTGTTGAA+TGG | - | chr8_1:55341794-55341813 | Msa1202000:exon | 35.0% |
| !! | TGAAATGGGTTTTTCGCTAA+TGG | - | chr8_1:55341969-55341988 | Msa1202000:intron | 35.0% |
| !! | GAAATGGGTTTTTCGCTAAT+GGG | - | chr8_1:55341970-55341989 | Msa1202000:intron | 35.0% |
| ACGTGGTTAATTACGTTTAG+TGG | - | chr8_1:55342132-55342151 | Msa1202000:CDS | 35.0% | |
| GTCAGCAACATTCAAAATTG+AGG | + | chr8_1:55342378-55342397 | None:intergenic | 35.0% | |
| TGTATTCATTAACCATCCAC+TGG | - | chr8_1:55342572-55342591 | Msa1202000:intron | 35.0% | |
| ATGTAGTTAATCATGTCCAG+TGG | + | chr8_1:55342591-55342610 | None:intergenic | 35.0% | |
| !!! | GTTATTTTGGTTCTCAAAGG+TGG | - | chr8_1:55342717-55342736 | Msa1202000:intron | 35.0% |
| ! | GGATTAAGGATTTTCGTTAC+AGG | - | chr8_1:55342856-55342875 | Msa1202000:intron | 35.0% |
| GCAGGTCATATTTATGAATC+CGG | - | chr8_1:55342912-55342931 | Msa1202000:intron | 35.0% | |
| TATAGATATGGGGATGCATT+GGG | + | chr8_1:55342939-55342958 | None:intergenic | 35.0% | |
| AGAGGAGAACAAATCTTTAG+AGG | - | chr8_1:55343008-55343027 | Msa1202000:intron | 35.0% | |
| TCATTAGAGTTCAAAGGGAA+AGG | - | chr8_1:55343067-55343086 | Msa1202000:intron | 35.0% | |
| !! | TTCAAGTTGCAGTACAATAG+TGG | + | chr8_1:55343153-55343172 | None:intergenic | 35.0% |
| AGGTAACAAGAACATCTTAC+AGG | + | chr8_1:55343372-55343391 | None:intergenic | 35.0% | |
| ! | CTTTTCTGCCATTCATATTC+TGG | - | chr8_1:55343483-55343502 | Msa1202000:intron | 35.0% |
| ! | ATGAAGTGCCAGAATATGAA+TGG | + | chr8_1:55343494-55343513 | None:intergenic | 35.0% |
| TCTGTTGCATACAACTTTGT+CGG | + | chr8_1:55343691-55343710 | None:intergenic | 35.0% | |
| GAATCTCTACTTAGAAGGTT+TGG | - | chr8_1:55343879-55343898 | Msa1202000:intron | 35.0% | |
| ! | GTATGGAGAGCAAATTTTGA+TGG | - | chr8_1:55343932-55343951 | Msa1202000:intron | 35.0% |
| !!! | TAGCCCAATTTTTTAGGTAG+AGG | - | chr8_1:55343959-55343978 | Msa1202000:intron | 35.0% |
| TTAGGTAGAGGAAGACTATT+TGG | - | chr8_1:55343971-55343990 | Msa1202000:intron | 35.0% | |
| AACTATCAAGAAAGACCTTG+AGG | - | chr8_1:55343997-55344016 | Msa1202000:intron | 35.0% | |
| AAGAAAGACCTTGAGGTTAA+TGG | - | chr8_1:55344004-55344023 | Msa1202000:intron | 35.0% | |
| AACTCAAACCATTAACCTCA+AGG | + | chr8_1:55344015-55344034 | None:intergenic | 35.0% | |
| ! | AGTGGGATAAGACTTGATTT+TGG | - | chr8_1:55344102-55344121 | Msa1202000:intron | 35.0% |
| TTGGTTACTGTTGAATATGC+TGG | - | chr8_1:55344121-55344140 | Msa1202000:intron | 35.0% | |
| AGCATTAATATCTCCTTCTC+AGG | + | chr8_1:55344167-55344186 | None:intergenic | 35.0% | |
| !! | TAAGTGTCTTTGAAGTTGCA+AGG | - | chr8_1:55344333-55344352 | Msa1202000:intron | 35.0% |
| TTAGATGACTACGAATGGTT+GGG | + | chr8_1:55344401-55344420 | None:intergenic | 35.0% | |
| AAAGTTGTGTTCTTATCTGC+TGG | - | chr8_1:55344475-55344494 | Msa1202000:intron | 35.0% | |
| GGAAACCATACAAATTTCTC+CGG | - | chr8_1:55344511-55344530 | Msa1202000:intron | 35.0% | |
| ! | CTGTTTCTTCCTATCTATTC+AGG | - | chr8_1:55344567-55344586 | Msa1202000:CDS | 35.0% |
| CAATTCATCCCTGAATAGAT+AGG | + | chr8_1:55344579-55344598 | None:intergenic | 35.0% | |
| CTATTCAGGGATGAATTGAA+TGG | - | chr8_1:55344581-55344600 | Msa1202000:CDS | 35.0% | |
| TTTATATGGTAGCATGTAGC+AGG | - | chr8_1:55344831-55344850 | Msa1202000:intron | 35.0% | |
| TTATATGGTAGCATGTAGCA+GGG | - | chr8_1:55344832-55344851 | Msa1202000:intron | 35.0% | |
| ACAATAGATTCACACCTTAG+CGG | + | chr8_1:55345297-55345316 | None:intergenic | 35.0% | |
| !!! | TGCGTGTCCTTTTGTTTTTT+CGG | - | chr8_1:55345323-55345342 | Msa1202000:intron | 35.0% |
| !!! | GAAAGGCATTTTGAGAAACT+AGG | - | chr8_1:55345631-55345650 | Msa1202000:intron | 35.0% |
| !! | GAGATTTGCTAAGCGTTTAA+AGG | + | chr8_1:55345660-55345679 | None:intergenic | 35.0% |
| ATAGTATGAGGAAACAAACC+TGG | - | chr8_1:55345707-55345726 | Msa1202000:exon | 35.0% | |
| ! | TAACTTGCATGTCTGATAAC+TGG | - | chr8_1:55345741-55345760 | Msa1202000:five_prime_UTR | 35.0% |
| ! | AAGAGAGAAAGAGAGCGTAT+CGG | + | chr8_1:55341591-55341610 | None:intergenic | 40.0% |
| ATACGCTCTCTTTCTCTCTT+CGG | - | chr8_1:55341591-55341610 | Msa1202000:three_prime_UTR | 40.0% | |
| TCAGTAAGATTGCCTCCAAT+AGG | - | chr8_1:55341770-55341789 | Msa1202000:three_prime_UTR | 40.0% | |
| !! | AAGCTCTTTCTGAAGCCTAT+TGG | + | chr8_1:55341788-55341807 | None:intergenic | 40.0% |
| ACTTTGTAGTTGAAACCAGC+AGG | + | chr8_1:55341832-55341851 | None:intergenic | 40.0% | |
| AAGTCAGCGATAATCTCCAA+AGG | - | chr8_1:55341848-55341867 | Msa1202000:CDS | 40.0% | |
| !! | GGTTTTTCGCTAATGGGTAT+GGG | - | chr8_1:55341976-55341995 | Msa1202000:intron | 40.0% |
| ! | TTAACCTAGAAGCACGAACA+AGG | - | chr8_1:55342210-55342229 | Msa1202000:intron | 40.0% |
| ATGTGAACACTTGGATGTTG+TGG | - | chr8_1:55342484-55342503 | Msa1202000:intron | 40.0% | |
| CGTGGTTAATTCTGTTCTGT+TGG | - | chr8_1:55342527-55342546 | Msa1202000:intron | 40.0% | |
| AGTTAATCATGTCCAGTGGA+TGG | + | chr8_1:55342587-55342606 | None:intergenic | 40.0% | |
| !! | AGGTGGGTTATTGAAGTGAT+TGG | - | chr8_1:55342734-55342753 | Msa1202000:intron | 40.0% |
| ! | TCATTAGCATAAAGTGTCCC+AGG | + | chr8_1:55342764-55342783 | None:intergenic | 40.0% |
| TAATGAGACCTACAAGCTTC+AGG | - | chr8_1:55342778-55342797 | Msa1202000:intron | 40.0% | |
| AATGGCTTATTACACACCTG+TGG | + | chr8_1:55342836-55342855 | None:intergenic | 40.0% | |
| ACAGGTGTGTAATAAGCCAT+TGG | - | chr8_1:55342835-55342854 | Msa1202000:intron | 40.0% | |
| GGATTTGGATGGTTATTTGC+AGG | - | chr8_1:55342894-55342913 | Msa1202000:intron | 40.0% | |
| ATAGATATGGGGATGCATTG+GGG | + | chr8_1:55342938-55342957 | None:intergenic | 40.0% | |
| CTATAGATATGGGGATGCAT+TGG | + | chr8_1:55342940-55342959 | None:intergenic | 40.0% | |
| CATCCCCATATCTATAGCAA+CGG | - | chr8_1:55342943-55342962 | Msa1202000:intron | 40.0% | |
| ATCCCCATATCTATAGCAAC+GGG | - | chr8_1:55342944-55342963 | Msa1202000:intron | 40.0% | |
| ATGCCCGTTGCTATAGATAT+GGG | + | chr8_1:55342950-55342969 | None:intergenic | 40.0% | |
| TATGCCCGTTGCTATAGATA+TGG | + | chr8_1:55342951-55342970 | None:intergenic | 40.0% | |
| AGCAACGGGCATATTTGTTT+AGG | - | chr8_1:55342958-55342977 | Msa1202000:intron | 40.0% | |
| !! | ATAGTGGACATGTCACAGAA+TGG | + | chr8_1:55343137-55343156 | None:intergenic | 40.0% |
| GCAGAATAGTGAGCTATCAT+TGG | - | chr8_1:55343190-55343209 | Msa1202000:intron | 40.0% | |
| TGAACTGTCGATGTCGAAAA+GGG | + | chr8_1:55343227-55343246 | None:intergenic | 40.0% | |
| ATGAACTGTCGATGTCGAAA+AGG | + | chr8_1:55343228-55343247 | None:intergenic | 40.0% | |
| TCACTTTGTCTCTTTCTTGG+TGG | - | chr8_1:55343395-55343414 | Msa1202000:intron | 40.0% | |
| CACTTTGTCTCTTTCTTGGT+GGG | - | chr8_1:55343396-55343415 | Msa1202000:intron | 40.0% | |
| TCTTCGTTGTTCATTGTGGT+TGG | - | chr8_1:55343539-55343558 | Msa1202000:intron | 40.0% | |
| !! | TTTAGCTTGAGCAATGCCTT+TGG | + | chr8_1:55343642-55343661 | None:intergenic | 40.0% |
| !! | TTGTATGCAACAGAGTGTTG+CGG | - | chr8_1:55343697-55343716 | Msa1202000:intron | 40.0% |
| ATACAAGGCGAGTTAAGGTT+AGG | - | chr8_1:55343789-55343808 | Msa1202000:intron | 40.0% | |
| AGATGGTAGCTTCTGTAGTA+TGG | - | chr8_1:55343915-55343934 | Msa1202000:intron | 40.0% | |
| !! | TGGAGAGCAAATTTTGATGG+AGG | - | chr8_1:55343935-55343954 | Msa1202000:intron | 40.0% |
| !! | GGAGAGCAAATTTTGATGGA+GGG | - | chr8_1:55343936-55343955 | Msa1202000:intron | 40.0% |
| ATAGAACATTACAGCGTCGT+TGG | - | chr8_1:55344057-55344076 | Msa1202000:intron | 40.0% | |
| ! | TCAAGTCTTATCCCACTAGT+TGG | + | chr8_1:55344099-55344118 | None:intergenic | 40.0% |
| TGCTGGCACTATGAATTTGA+AGG | - | chr8_1:55344138-55344157 | Msa1202000:intron | 40.0% | |
| GCTGGCACTATGAATTTGAA+GGG | - | chr8_1:55344139-55344158 | Msa1202000:intron | 40.0% | |
| AATTTGAAGGGAACCTGAGA+AGG | - | chr8_1:55344151-55344170 | Msa1202000:intron | 40.0% | |
| GAAGTTGCAAGGCCTAAATT+TGG | - | chr8_1:55344344-55344363 | Msa1202000:intron | 40.0% | |
| GTTAGATGACTACGAATGGT+TGG | + | chr8_1:55344402-55344421 | None:intergenic | 40.0% | |
| GAAGATATATCGTCCATGGT+TGG | - | chr8_1:55344660-55344679 | Msa1202000:intron | 40.0% | |
| TATATGGTAGCATGTAGCAG+GGG | - | chr8_1:55344833-55344852 | Msa1202000:intron | 40.0% | |
| GCATACAGAACTAACAGTCA+TGG | + | chr8_1:55345243-55345262 | None:intergenic | 40.0% | |
| CAATAGATTCACACCTTAGC+GGG | + | chr8_1:55345296-55345315 | None:intergenic | 40.0% | |
| TGCTGTGATGTATCATCCAA+TGG | - | chr8_1:55345395-55345414 | Msa1202000:intron | 40.0% | |
| CTTGATCTCTTCTACAGCAA+CGG | - | chr8_1:55345449-55345468 | Msa1202000:intron | 40.0% | |
| ACATAGCGGTCATTATCTTC+AGG | + | chr8_1:55345475-55345494 | None:intergenic | 40.0% | |
| TAGAAATGGAAGATCTCCCA+AGG | - | chr8_1:55345504-55345523 | Msa1202000:CDS | 40.0% | |
| !! | CTCTTTCTGAAGCCTATTGG+AGG | + | chr8_1:55341785-55341804 | None:intergenic | 45.0% |
| TTGTAGTTGAAACCAGCAGG+AGG | + | chr8_1:55341829-55341848 | None:intergenic | 45.0% | |
| !! | GGGTTTTTCGCTAATGGGTA+TGG | - | chr8_1:55341975-55341994 | Msa1202000:intron | 45.0% |
| AAGTCCTTGTTCGTGCTTCT+AGG | + | chr8_1:55342217-55342236 | None:intergenic | 45.0% | |
| ! | AGAAGCACGAACAAGGACTT+TGG | - | chr8_1:55342217-55342236 | Msa1202000:intron | 45.0% |
| TTTGGACACGACACAAACAC+AGG | - | chr8_1:55342235-55342254 | Msa1202000:intron | 45.0% | |
| ! | ATCGAAGGTGAAGGTGTGAT+CGG | + | chr8_1:55342326-55342345 | None:intergenic | 45.0% |
| ACACTACTGATCGAAGGTGA+AGG | + | chr8_1:55342335-55342354 | None:intergenic | 45.0% | |
| TCACCTTCGATCAGTAGTGT+CGG | - | chr8_1:55342335-55342354 | Msa1202000:intron | 45.0% | |
| ATTGAAGTGATTGGAGCTCC+TGG | - | chr8_1:55342743-55342762 | Msa1202000:intron | 45.0% | |
| TTGAAGTGATTGGAGCTCCT+GGG | - | chr8_1:55342744-55342763 | Msa1202000:intron | 45.0% | |
| GAAATCGACCTGAAGCTTGT+AGG | + | chr8_1:55342789-55342808 | None:intergenic | 45.0% | |
| TGCCCGTTGCTATAGATATG+GGG | + | chr8_1:55342949-55342968 | None:intergenic | 45.0% | |
| GAGTTCAAAGGGAAAGGTAG+TGG | - | chr8_1:55343073-55343092 | Msa1202000:intron | 45.0% | |
| TGTCGATGTCGAAAAGGGTA+CGG | + | chr8_1:55343222-55343241 | None:intergenic | 45.0% | |
| !! | TGTATGCAACAGAGTGTTGC+GGG | - | chr8_1:55343698-55343717 | Msa1202000:intron | 45.0% |
| GGGAAATACAAGGCGAGTTA+AGG | - | chr8_1:55343784-55343803 | Msa1202000:intron | 45.0% | |
| !!! | GGAGGGTAGCCCAATTTTTT+AGG | - | chr8_1:55343953-55343972 | Msa1202000:intron | 45.0% |
| ATTACAGCGTCGTTGGATCT+AGG | - | chr8_1:55344064-55344083 | Msa1202000:intron | 45.0% | |
| GGTGGTTAGATGACTACGAA+TGG | + | chr8_1:55344406-55344425 | None:intergenic | 45.0% | |
| GTTGTGTTCTTATCTGCTGG+AGG | - | chr8_1:55344478-55344497 | Msa1202000:intron | 45.0% | |
| !! | TCTGCTGGAGGTATTACACT+CGG | - | chr8_1:55344490-55344509 | Msa1202000:intron | 45.0% |
| ATGTATCACCGATACTACCG+AGG | + | chr8_1:55344958-55344977 | None:intergenic | 45.0% | |
| AGAACTAACAGTCATGGCAG+GGG | + | chr8_1:55345237-55345256 | None:intergenic | 45.0% | |
| CAGAACTAACAGTCATGGCA+GGG | + | chr8_1:55345238-55345257 | None:intergenic | 45.0% | |
| ACAGAACTAACAGTCATGGC+AGG | + | chr8_1:55345239-55345258 | None:intergenic | 45.0% | |
| TACACATGCATGAATGCGTG+TGG | - | chr8_1:55345365-55345384 | Msa1202000:intron | 45.0% | |
| AACCACCATCTTGTCTCCTT+GGG | + | chr8_1:55345523-55345542 | None:intergenic | 45.0% | |
| !!! | TTTAATATAGATTATTTTTT+TGG | + | chr8_1:55343294-55343313 | None:intergenic | 5.0% |
| GGAGTTTGAGGAGCTAGTCA+TGG | + | chr8_1:55341656-55341675 | None:intergenic | 50.0% | |
| AACCTTGCGAGAGGAGTTTG+AGG | + | chr8_1:55341668-55341687 | None:intergenic | 50.0% | |
| GGAGAAACAAACCTTGCGAG+AGG | + | chr8_1:55341677-55341696 | None:intergenic | 50.0% | |
| TGGCAGATTAATCCTCCTGC+TGG | - | chr8_1:55341814-55341833 | Msa1202000:CDS | 50.0% | |
| GTGTCTCACACCAACACATG+TGG | + | chr8_1:55342300-55342319 | None:intergenic | 50.0% | |
| ! | TTTCCCAGAGCACTACCCAA+TGG | - | chr8_1:55342805-55342824 | Msa1202000:intron | 50.0% |
| CTTCCATTGGGTAGTGCTCT+GGG | + | chr8_1:55342811-55342830 | None:intergenic | 50.0% | |
| ACACCTGTGGAGCTTCCATT+GGG | + | chr8_1:55342823-55342842 | None:intergenic | 50.0% | |
| GTGGACATGTCACAGAATGG+TGG | + | chr8_1:55343134-55343153 | None:intergenic | 50.0% | |
| GCCTTGTATTTCCCCTCATG+GGG | + | chr8_1:55343778-55343797 | None:intergenic | 50.0% | |
| CGCCTTGTATTTCCCCTCAT+GGG | + | chr8_1:55343779-55343798 | None:intergenic | 50.0% | |
| TCGCCTTGTATTTCCCCTCA+TGG | + | chr8_1:55343780-55343799 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGTTG+AGG | - | chr8_1:55343830-55343849 | Msa1202000:intron | 50.0% | |
| GAAGGTTTGGGCATGTGTGA+AGG | - | chr8_1:55343892-55343911 | Msa1202000:intron | 50.0% | |
| TTGGGCATGTGTGAAGGAGA+TGG | - | chr8_1:55343898-55343917 | Msa1202000:intron | 50.0% | |
| AGGTAGGCAACTCCAACTAG+TGG | - | chr8_1:55344084-55344103 | Msa1202000:intron | 50.0% | |
| GGTAGGCAACTCCAACTAGT+GGG | - | chr8_1:55344085-55344104 | Msa1202000:intron | 50.0% | |
| GATAGTCTGGTGTGTGCACT+AGG | - | chr8_1:55344189-55344208 | Msa1202000:intron | 50.0% | |
| ! | AGGAGATGGAGAGAGCGTAA+TGG | + | chr8_1:55344938-55344957 | None:intergenic | 50.0% |
| TTACGCTCTCTCCATCTCCT+CGG | - | chr8_1:55344938-55344957 | Msa1202000:intron | 50.0% | |
| CTCCATCTCCTCGGTAGTAT+CGG | - | chr8_1:55344947-55344966 | Msa1202000:intron | 50.0% | |
| GATCTCCCAAGGAGACAAGA+TGG | - | chr8_1:55345515-55345534 | Msa1202000:CDS | 50.0% | |
| GAACCACCATCTTGTCTCCT+TGG | + | chr8_1:55345524-55345543 | None:intergenic | 50.0% | |
| CTCCTCAAACTCCTCTCGCA+AGG | - | chr8_1:55341663-55341682 | Msa1202000:three_prime_UTR | 55.0% | |
| ! | GCACCGACACTACTGATCGA+AGG | + | chr8_1:55342341-55342360 | None:intergenic | 55.0% |
| GCTTCCATTGGGTAGTGCTC+TGG | + | chr8_1:55342812-55342831 | None:intergenic | 55.0% | |
| CTACCCAATGGAAGCTCCAC+AGG | - | chr8_1:55342817-55342836 | Msa1202000:intron | 55.0% | |
| CACACCTGTGGAGCTTCCAT+TGG | + | chr8_1:55342824-55342843 | None:intergenic | 55.0% | |
| ATATGGGGATGCATTGGGGC+CGG | + | chr8_1:55342934-55342953 | None:intergenic | 55.0% | |
| TGAGAATGCTGTGCCCCATG+AGG | - | chr8_1:55343762-55343781 | Msa1202000:intron | 55.0% | |
| GAGAATGCTGTGCCCCATGA+GGG | - | chr8_1:55343763-55343782 | Msa1202000:intron | 55.0% | |
| AGAATGCTGTGCCCCATGAG+GGG | - | chr8_1:55343764-55343783 | Msa1202000:intron | 55.0% | |
| GCCCCATGAGGGGAAATACA+AGG | - | chr8_1:55343774-55343793 | Msa1202000:intron | 55.0% | |
| CAGCGTCGTTGGATCTAGGT+AGG | - | chr8_1:55344068-55344087 | Msa1202000:intron | 55.0% | |
| CACCGATACTACCGAGGAGA+TGG | + | chr8_1:55344952-55344971 | None:intergenic | 55.0% | |
| CTCCCAAGGAGACAAGATGG+TGG | - | chr8_1:55345518-55345537 | Msa1202000:CDS | 55.0% | |
| GCTCTCAAGCTCACCCGCTA+AGG | - | chr8_1:55345280-55345299 | Msa1202000:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 55341559 | 55345812 | 55341559 | ID=Msa1202000;Name=Msa1202000 |
| chr8_1 | mRNA | 55341559 | 55345812 | 55341559 | ID=Msa1202000-mRNA-1;Parent=Msa1202000;Name=Msa1202000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=96|0.8|0.83|1|1|1|6|251|161 |
| chr8_1 | exon | 55341559 | 55341905 | 55341559 | ID=Msa1202000-mRNA-1:exon:17929;Parent=Msa1202000-mRNA-1 |
| chr8_1 | exon | 55342070 | 55342158 | 55342070 | ID=Msa1202000-mRNA-1:exon:17928;Parent=Msa1202000-mRNA-1 |
| chr8_1 | exon | 55344392 | 55344455 | 55344392 | ID=Msa1202000-mRNA-1:exon:17927;Parent=Msa1202000-mRNA-1 |
| chr8_1 | exon | 55344533 | 55344635 | 55344533 | ID=Msa1202000-mRNA-1:exon:17926;Parent=Msa1202000-mRNA-1 |
| chr8_1 | exon | 55345502 | 55345605 | 55345502 | ID=Msa1202000-mRNA-1:exon:17925;Parent=Msa1202000-mRNA-1 |
| chr8_1 | exon | 55345687 | 55345812 | 55345687 | ID=Msa1202000-mRNA-1:exon:17924;Parent=Msa1202000-mRNA-1 |
| chr8_1 | five_prime_UTR | 55345717 | 55345812 | 55345717 | ID=Msa1202000-mRNA-1:five_prime_utr;Parent=Msa1202000-mRNA-1 |
| chr8_1 | CDS | 55345687 | 55345716 | 55345687 | ID=Msa1202000-mRNA-1:cds;Parent=Msa1202000-mRNA-1 |
| chr8_1 | CDS | 55345502 | 55345605 | 55345502 | ID=Msa1202000-mRNA-1:cds;Parent=Msa1202000-mRNA-1 |
| chr8_1 | CDS | 55344533 | 55344635 | 55344533 | ID=Msa1202000-mRNA-1:cds;Parent=Msa1202000-mRNA-1 |
| chr8_1 | CDS | 55344392 | 55344455 | 55344392 | ID=Msa1202000-mRNA-1:cds;Parent=Msa1202000-mRNA-1 |
| chr8_1 | CDS | 55342070 | 55342158 | 55342070 | ID=Msa1202000-mRNA-1:cds;Parent=Msa1202000-mRNA-1 |
| chr8_1 | CDS | 55341810 | 55341905 | 55341810 | ID=Msa1202000-mRNA-1:cds;Parent=Msa1202000-mRNA-1 |
| chr8_1 | three_prime_UTR | 55341559 | 55341809 | 55341559 | ID=Msa1202000-mRNA-1:three_prime_utr;Parent=Msa1202000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
