AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352330 MtrunA17_Chr8g0389911 96.311 515 18 1 1 515 1 514 0.0 1020
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352330 AT2G40570.1 62.741 518 161 5 5 502 7 512 0.0 653
Msa1352330 AT2G40570.2 60.784 459 148 5 5 443 7 453 0.0 553
Msa1352330 AT2G40570.3 59.204 402 132 5 121 502 1 390 1.08e-162 468

Find 121 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAACACATGTCACTAAA+TGG 0.191161 tig0012581:+221686 Msa1352330:CDS
TTGGTTGGGTTCTACTAATT+TGG 0.201180 tig0012581:+220174 Msa1352330:CDS
TTTAGGAATATTATTTAATA+AGG 0.220304 tig0012581:-220979 None:intergenic
CAAGTATTTAACTTTCTTAT+TGG 0.228126 tig0012581:+221781 Msa1352330:CDS
TTGAAGATTCTGAAATTTCT+TGG 0.235449 tig0012581:+220155 Msa1352330:CDS
ATGTCACTATTTGATGAAAA+AGG 0.238995 tig0012581:+221495 Msa1352330:CDS
GTTTAACTCCACCTCTCTTT+TGG 0.254137 tig0012581:+219939 Msa1352330:CDS
CTCTTTGCACCTACCACTTT+GGG 0.256359 tig0012581:+219604 Msa1352330:CDS
GCAGTTGGTGCATCTCAATT+TGG 0.264652 tig0012581:+220196 Msa1352330:CDS
TTGGCGAAGCTCACAGCTTT+AGG 0.269873 tig0012581:-220996 None:intergenic
CAAACCTTCGTTGTGGCTTA+TGG 0.270853 tig0012581:+218500 Msa1352330:CDS
AGTCCATATGGGTATTGTTT+TGG 0.275831 tig0012581:-218991 None:intergenic
CAACAATATCTGCAACCTTC+TGG 0.295584 tig0012581:-220006 None:intergenic
GTTTATGATCTTATAAATTC+AGG 0.311705 tig0012581:+219968 Msa1352330:CDS
AGAAACCATTACGTCCTCTA+TGG 0.329597 tig0012581:+219729 Msa1352330:CDS
CATAATTATACTCTGATCTC+TGG 0.352861 tig0012581:+221961 Msa1352330:three_prime_UTR
GATTCTGAAATTTCTTGGTT+GGG 0.360518 tig0012581:+220160 Msa1352330:CDS
CTTCATGTGGCTCATCTTGC+CGG 0.360588 tig0012581:+218610 Msa1352330:CDS
CACTTCATACTAACCACAAT+TGG 0.366594 tig0012581:-220865 None:intergenic
CAGTCTGGGAAAACGACTTC+TGG 0.367787 tig0012581:+221028 Msa1352330:CDS
CGCCAAGTTCAACCTCAGTC+TGG 0.370680 tig0012581:+221013 Msa1352330:CDS
ATGCAGATATGCTTCTGAAC+TGG 0.370735 tig0012581:-220839 None:intergenic
TTCAATTGAGGAGCACTTAG+AGG 0.377011 tig0012581:+219646 Msa1352330:CDS
AAGTACCTCACCATGATTCT+TGG 0.384534 tig0012581:+219783 Msa1352330:CDS
TTGGTGAAATCTCTCAATTA+TGG 0.388583 tig0012581:+218458 Msa1352330:CDS
GGTTGCAGATATTGTTGAAA+AGG 0.390385 tig0012581:+220012 Msa1352330:CDS
GCTCTTTGCACCTACCACTT+TGG 0.397860 tig0012581:+219603 Msa1352330:CDS
AGAGAGAGAGATTTGGATGG+AGG 0.401988 tig0012581:+218318 Msa1352330:exon
ATTGTTGATTCTACTAGAAA+AGG 0.402225 tig0012581:+218945 Msa1352330:CDS
ATTAAGAACACAAGTCCATA+TGG 0.405714 tig0012581:-219003 None:intergenic
TTTCTCAGAAAACCGTCATA+TGG 0.434975 tig0012581:+219753 Msa1352330:CDS
TCCCAGACTGAGGTTGAACT+TGG 0.441685 tig0012581:-221015 None:intergenic
AGATTCTGAAATTTCTTGGT+TGG 0.447110 tig0012581:+220159 Msa1352330:CDS
CGGAGTTAGTCTTGTTGTGT+TGG 0.451487 tig0012581:-219859 None:intergenic
AGTGACATGTGTTGGATTGA+AGG 0.451734 tig0012581:-221680 None:intergenic
GTTGCAGATATTGTTGAAAA+GGG 0.452363 tig0012581:+220013 Msa1352330:CDS
GTATTTAACTTTCTTATTGG+CGG 0.453559 tig0012581:+221784 Msa1352330:CDS
TTCACATGAAGAACCGTCAC+TGG 0.457939 tig0012581:+220093 Msa1352330:CDS
GGTTCTACTAATTTGGCAGT+TGG 0.458544 tig0012581:+220181 Msa1352330:CDS
AGACTAACTCCGAGTTTAGC+TGG 0.459669 tig0012581:+219870 Msa1352330:CDS
TGATGAAGAAAGTTGGTCTA+GGG 0.459876 tig0012581:+219916 Msa1352330:CDS
AGTACCTCACCATGATTCTT+GGG 0.460763 tig0012581:+219784 Msa1352330:CDS
GATTTGGATGGAGGTTTCAG+AGG 0.461438 tig0012581:+218327 Msa1352330:exon
ATGATGAAGAAAGTTGGTCT+AGG 0.463397 tig0012581:+219915 Msa1352330:CDS
TCCAACACATGTCACTAAAT+GGG 0.469707 tig0012581:+221687 Msa1352330:CDS
TGCAGATATGCTTCTGAACT+GGG 0.472467 tig0012581:-220838 None:intergenic
TAAAACAGGAGGACTCTGAT+TGG 0.473484 tig0012581:+219576 Msa1352330:intron
TCCCATTTAGTGACATGTGT+TGG 0.476657 tig0012581:-221688 None:intergenic
TTGGGTTCCCCTAACAGAAA+AGG 0.481450 tig0012581:+219622 Msa1352330:CDS
GAAGCAGAGACAAGTATGAT+TGG 0.483080 tig0012581:-219815 None:intergenic
TTCAGAATCTTCAAAAGACT+TGG 0.483295 tig0012581:-220146 None:intergenic
CAGATATTGTTGAAAAGGGT+AGG 0.485773 tig0012581:+220017 Msa1352330:CDS
ATTTGGATGGAGGTTTCAGA+GGG 0.487914 tig0012581:+218328 Msa1352330:exon
ATGTAAAAGCAATATTAAAG+TGG 0.490795 tig0012581:+222124 Msa1352330:three_prime_UTR
TGCCTCAAATTTCCTCTGCA+TGG 0.501403 tig0012581:-221760 None:intergenic
TCTGCTTCTTCTTCGTCGAA+CGG 0.507739 tig0012581:+219830 Msa1352330:CDS
AACAGAAAAGGCTTCAATTG+AGG 0.512040 tig0012581:+219634 Msa1352330:CDS
TGTCCAAAACAATACCCATA+TGG 0.513040 tig0012581:+218988 Msa1352330:CDS
TGGAATTATATACCAGGTGC+AGG 0.514128 tig0012581:+219890 Msa1352330:CDS
TTCACATTGGTAGCACAGAA+AGG 0.515456 tig0012581:+218912 Msa1352330:intron
AAAACAGGAGGACTCTGATT+GGG 0.521682 tig0012581:+219577 Msa1352330:intron
AGTGGAGAAAGAACAATTGT+TGG 0.522246 tig0012581:-218575 None:intergenic
GCCAAGTTCAACCTCAGTCT+GGG 0.524140 tig0012581:+221014 Msa1352330:CDS
CTTCTGGTCTGTTGTAATGA+TGG 0.525769 tig0012581:+221044 Msa1352330:CDS
ACCTTCTGGTTACACACATC+AGG 0.526083 tig0012581:-219992 None:intergenic
AGGACGTAATGGTTTCTTCA+AGG 0.532352 tig0012581:-219723 None:intergenic
TTTCTTCAAGGAAGCAGAGA+GGG 0.542619 tig0012581:-219711 None:intergenic
ATATCTGCATCTTCCAATTG+TGG 0.544558 tig0012581:+220852 Msa1352330:CDS
CAGGAGATGATGAAGAAAGT+TGG 0.550974 tig0012581:+219909 Msa1352330:CDS
ATTTGAAGTAACAAGTGGAA+TGG 0.557228 tig0012581:-218537 None:intergenic
TCTTCATCATCTCCTGCACC+TGG 0.558959 tig0012581:-219902 None:intergenic
ACGCAGGAGGACGGTGAGGA+CGG 0.560519 tig0012581:+221823 Msa1352330:CDS
TTGAGGAGCACTTAGAGGAA+TGG 0.566335 tig0012581:+219651 Msa1352330:CDS
ACTACCGTGCCTTGACAACA+TGG 0.566624 tig0012581:-222049 None:intergenic
CACTCTCTCCTCTATAAGCA+CGG 0.569848 tig0012581:-220045 None:intergenic
TACTTCATTTAACCATATGA+CGG 0.570101 tig0012581:-219765 None:intergenic
AGATATTGTTGAAAAGGGTA+GGG 0.570383 tig0012581:+220018 Msa1352330:CDS
ACTGGGAAGACAGACAGTGA+TGG 0.572511 tig0012581:-220821 None:intergenic
ACATCAATTGTGCCTCAACA+TGG 0.575894 tig0012581:+221934 Msa1352330:three_prime_UTR
TTTATACATCCATGTTGTCA+AGG 0.579731 tig0012581:+222040 Msa1352330:three_prime_UTR
GACCATGCAGAGGAAATTTG+AGG 0.582442 tig0012581:+221758 Msa1352330:CDS
GAAATCCATAGAGGACGTAA+TGG 0.585465 tig0012581:-219734 None:intergenic
CGGCAAGATGAGCCACATGA+AGG 0.587451 tig0012581:-218609 None:intergenic
CAACGAAGGTTTGCGAGAAG+AGG 0.590031 tig0012581:-218490 None:intergenic
AGGGTACGCCGTGCTTATAG+AGG 0.592755 tig0012581:+220037 Msa1352330:CDS
TTAAGAACACAAGTCCATAT+GGG 0.593188 tig0012581:-219002 None:intergenic
TAATTATGAATTCCATGTTG+AGG 0.597906 tig0012581:-221946 None:intergenic
TAAACATGATTCCAAAAGAG+AGG 0.602721 tig0012581:-219950 None:intergenic
ATGAAGGTTGAGACGAGCAG+TGG 0.605089 tig0012581:-218593 None:intergenic
ACTCAACAATTGAAAGCAAG+TGG 0.606898 tig0012581:+219674 Msa1352330:CDS
TGCTCGTCTCAACCTTCATG+TGG 0.609552 tig0012581:+218597 Msa1352330:CDS
ACATGATTCCAAAAGAGAGG+TGG 0.610571 tig0012581:-219947 None:intergenic
CTTCTCGCAAACCTTCGTTG+TGG 0.610869 tig0012581:+218493 Msa1352330:CDS
TTAGTTCTTACACTCAATTG+TGG 0.611445 tig0012581:-219077 None:intergenic
CTAAATGGGATATGAGAAGA+CGG 0.611731 tig0012581:+221701 Msa1352330:CDS
GATGAAGAAAGTTGGTCTAG+GGG 0.614897 tig0012581:+219917 Msa1352330:CDS
GTGTGAAATCCCAAGAATCA+TGG 0.615808 tig0012581:-219793 None:intergenic
TATATAATTCCAGCTAAACT+CGG 0.617179 tig0012581:-219879 None:intergenic
TGTTACTTCAAATCCACCGA+TGG 0.619805 tig0012581:+218547 Msa1352330:CDS
AGTGATTTAACTCTAATCTG+AGG 0.620966 tig0012581:-220070 None:intergenic
TCTGTTAGGGGAACCCAAAG+TGG 0.621990 tig0012581:-219617 None:intergenic
ATTCTTCAAACGCAGGAGGA+CGG 0.622513 tig0012581:+221814 Msa1352330:CDS
ATTCAATATGCAATCAACAT+CGG 0.622975 tig0012581:-220785 None:intergenic
TTTGCGAGAAGAGGAAGTTG+AGG 0.623087 tig0012581:-218481 None:intergenic
GGTGGATTTGAAGTAACAAG+TGG 0.624038 tig0012581:-218542 None:intergenic
ATTGTTGGTGTGACCATCGG+TGG 0.626408 tig0012581:-218560 None:intergenic
TTAGGGGAACCCAAAGTGGT+AGG 0.626546 tig0012581:-219613 None:intergenic
AAAATGCATTCTTCAAACGC+AGG 0.634619 tig0012581:+221807 Msa1352330:CDS
GAAACATCAGAAGCCAGTGA+CGG 0.635407 tig0012581:-220106 None:intergenic
ACATCCATGTTGTCAAGGCA+CGG 0.635642 tig0012581:+222045 Msa1352330:three_prime_UTR
ACAATTGTTGGTGTGACCAT+CGG 0.637223 tig0012581:-218563 None:intergenic
CAGGAGGACGGTGAGGACGG+TGG 0.641896 tig0012581:+221826 Msa1352330:CDS
TTTAGCTGGAATTATATACC+AGG 0.650098 tig0012581:+219884 Msa1352330:CDS
TCCTGATGTGTGTAACCAGA+AGG 0.656585 tig0012581:+219991 Msa1352330:CDS
ACATTGGTAGCACAGAAAGG+TGG 0.667927 tig0012581:+218915 Msa1352330:intron
ACAAATGCACGACCATGCAG+AGG 0.670429 tig0012581:+221748 Msa1352330:CDS
ATGCATTCTTCAAACGCAGG+AGG 0.677184 tig0012581:+221810 Msa1352330:CDS
TCAAACGCAGGAGGACGGTG+AGG 0.691944 tig0012581:+221819 Msa1352330:CDS
AAATCCCAAGAATCATGGTG+AGG 0.698775 tig0012581:-219788 None:intergenic
GTTTCTTCAAGGAAGCAGAG+AGG 0.710661 tig0012581:-219712 None:intergenic
AGTACCATAAGCCACAACGA+AGG 0.749652 tig0012581:-218504 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATATGTTCTTAATTAA+TGG - tig0012581:220492-220511 None:intergenic 10.0%
!! AAATATAAATTTAAGTCAAT+AGG - tig0012581:220648-220667 None:intergenic 10.0%
!! TTTAGGAATATTATTTAATA+AGG - tig0012581:220982-221001 None:intergenic 10.0%
!!! TTTAAATTTAAAATTAGTAG+TGG + tig0012581:221258-221277 Msa1352330:intron 10.0%
!!! TATATATTTTTAAGTAGAAA+TGG - tig0012581:221623-221642 None:intergenic 10.0%
!! AACTAGAATTATAATTGAAT+AGG - tig0012581:218653-218672 None:intergenic 15.0%
!!! TATATATAGTCTTACAAATT+TGG + tig0012581:218841-218860 Msa1352330:intron 15.0%
!!! ATGAAAATCTCTTTTAAATT+GGG - tig0012581:219039-219058 None:intergenic 15.0%
!!! TATGAAAATCTCTTTTAAAT+TGG - tig0012581:219040-219059 None:intergenic 15.0%
!!! ATTTAAAAGAGATTTTCATA+TGG + tig0012581:219040-219059 Msa1352330:CDS 15.0%
!! TTGAAATAAAATGTAAAAGA+GGG - tig0012581:219126-219145 None:intergenic 15.0%
!!! TTTGAAATAAAATGTAAAAG+AGG - tig0012581:219127-219146 None:intergenic 15.0%
!!! TTTTTTTAACAAATTGTTCA+TGG + tig0012581:219296-219315 Msa1352330:intron 15.0%
!!! TTTTTTAACAAATTGTTCAT+GGG + tig0012581:219297-219316 Msa1352330:intron 15.0%
!!! GATAGATTACTTTTATAATT+TGG - tig0012581:219440-219459 None:intergenic 15.0%
!!! ATATTTTACTATGTTTTATG+TGG + tig0012581:220727-220746 Msa1352330:intron 15.0%
!! ATACTAATTAACAATTGAAT+TGG - tig0012581:221209-221228 None:intergenic 15.0%
!!! AACACATAAAACTTTTAAAT+AGG - tig0012581:221364-221383 None:intergenic 15.0%
!! CTACTTAAAAATATATATCA+TGG + tig0012581:221626-221645 Msa1352330:intron 15.0%
!!! TTTTATACTTTTGTTCACAT+TGG + tig0012581:218899-218918 Msa1352330:intron 20.0%
!!! CAATGTCAACAAATATTTTA+TGG + tig0012581:219393-219412 Msa1352330:intron 20.0%
!!! TATAAGGACTTTTTTTTAAG+AGG + tig0012581:219489-219508 Msa1352330:intron 20.0%
!! AACAGCACAATTATTATAAA+GGG - tig0012581:219549-219568 None:intergenic 20.0%
!! GTTTATGATCTTATAAATTC+AGG + tig0012581:219968-219987 Msa1352330:CDS 20.0%
!! AATATTATGATGTACTATAG+TGG + tig0012581:220247-220266 Msa1352330:intron 20.0%
!! TTTAAACTTCAACAAAATTG+TGG + tig0012581:220364-220383 Msa1352330:intron 20.0%
!!! ATTATTTTTCTTTGCTTTTC+AGG + tig0012581:221435-221454 Msa1352330:intron 20.0%
!!! TTATTTTTCTTTGCTTTTCA+GGG + tig0012581:221436-221455 Msa1352330:intron 20.0%
!!! ATATTTTTAAGTAGAAATGG+TGG - tig0012581:221620-221639 None:intergenic 20.0%
!! TATATATCATGGTTATTTAC+AGG + tig0012581:221637-221656 Msa1352330:intron 20.0%
!!! CAAGTATTTAACTTTCTTAT+TGG + tig0012581:221781-221800 Msa1352330:CDS 20.0%
!!! GATTTTGAGCAAAATTTAAT+TGG - tig0012581:221992-222011 None:intergenic 20.0%
!! ATGTAAAAGCAATATTAAAG+TGG + tig0012581:222124-222143 Msa1352330:three_prime_UTR 20.0%
! TGATATCTCATAAAACATTC+TGG - tig0012581:218821-218840 None:intergenic 25.0%
!! ATATAGTCTTACAAATTTGG+TGG + tig0012581:218844-218863 Msa1352330:intron 25.0%
!!! ATTGTTGATTCTACTAGAAA+AGG + tig0012581:218945-218964 Msa1352330:CDS 25.0%
! AAATAAAATGTAAAAGAGGG+AGG - tig0012581:219123-219142 None:intergenic 25.0%
!! AACAAAGCAAAGCTTTTATA+AGG + tig0012581:219473-219492 Msa1352330:intron 25.0%
! CAACAGCACAATTATTATAA+AGG - tig0012581:219550-219569 None:intergenic 25.0%
! TACTTCATTTAACCATATGA+CGG - tig0012581:219768-219787 None:intergenic 25.0%
! TATATAATTCCAGCTAAACT+CGG - tig0012581:219882-219901 None:intergenic 25.0%
!!! TTGAAGATTCTGAAATTTCT+TGG + tig0012581:220155-220174 Msa1352330:CDS 25.0%
! TTAGTGTTCTAACAAAATCA+TGG - tig0012581:220395-220414 None:intergenic 25.0%
! AAATTTAAGTCAATAGGACT+AGG - tig0012581:220642-220661 None:intergenic 25.0%
! ATTCAATATGCAATCAACAT+CGG - tig0012581:220788-220807 None:intergenic 25.0%
!!! GCACTGATTTTAATTTTTCA+TGG + tig0012581:220930-220949 Msa1352330:intron 25.0%
!! TTTTCTACTAATAGTTGACT+AGG + tig0012581:221100-221119 Msa1352330:intron 25.0%
!!! TATTTTTCTTTGCTTTTCAG+GGG + tig0012581:221437-221456 Msa1352330:intron 25.0%
! ATGTCACTATTTGATGAAAA+AGG + tig0012581:221495-221514 Msa1352330:CDS 25.0%
!! GTATTTAACTTTCTTATTGG+CGG + tig0012581:221784-221803 Msa1352330:CDS 25.0%
! TAATTATGAATTCCATGTTG+AGG - tig0012581:221949-221968 None:intergenic 25.0%
!! CTTTTACATTTCATTCAAAC+TGG - tig0012581:222113-222132 None:intergenic 25.0%
! TATCAAGATTCTGTTTTCGT+TGG + tig0012581:218439-218458 Msa1352330:CDS 30.0%
TTGGTGAAATCTCTCAATTA+TGG + tig0012581:218458-218477 Msa1352330:CDS 30.0%
! ATTTGAAGTAACAAGTGGAA+TGG - tig0012581:218540-218559 None:intergenic 30.0%
AATCAAAGGACGAATTTGAT+AGG - tig0012581:218687-218706 None:intergenic 30.0%
ATTCGTCCTTTGATTCTATA+AGG + tig0012581:218692-218711 Msa1352330:intron 30.0%
TGCCATAATGAATAGACAAA+AGG + tig0012581:218772-218791 Msa1352330:intron 30.0%
GCCATAATGAATAGACAAAA+GGG + tig0012581:218773-218792 Msa1352330:intron 30.0%
TTAAGAACACAAGTCCATAT+GGG - tig0012581:219005-219024 None:intergenic 30.0%
ATTAAGAACACAAGTCCATA+TGG - tig0012581:219006-219025 None:intergenic 30.0%
! TTAGTTCTTACACTCAATTG+TGG - tig0012581:219080-219099 None:intergenic 30.0%
!!! CTTTGCTTTGTTTTTAGTCA+TGG - tig0012581:219465-219484 None:intergenic 30.0%
! AATTGAAGCCTTTTCTGTTA+GGG - tig0012581:219633-219652 None:intergenic 30.0%
TTTAGCTGGAATTATATACC+AGG + tig0012581:219884-219903 Msa1352330:CDS 30.0%
TAAACATGATTCCAAAAGAG+AGG - tig0012581:219953-219972 None:intergenic 30.0%
GTTGCAGATATTGTTGAAAA+GGG + tig0012581:220013-220032 Msa1352330:CDS 30.0%
AGATATTGTTGAAAAGGGTA+GGG + tig0012581:220018-220037 Msa1352330:CDS 30.0%
AGTGATTTAACTCTAATCTG+AGG - tig0012581:220073-220092 None:intergenic 30.0%
TTCAGAATCTTCAAAAGACT+TGG - tig0012581:220149-220168 None:intergenic 30.0%
!! AGATTCTGAAATTTCTTGGT+TGG + tig0012581:220159-220178 Msa1352330:CDS 30.0%
!! GATTCTGAAATTTCTTGGTT+GGG + tig0012581:220160-220179 Msa1352330:CDS 30.0%
! TGCAACTTTTGCTAAAATTG+TGG - tig0012581:220342-220361 None:intergenic 30.0%
ATGCATATGGTGATTTACAT+TGG + tig0012581:220532-220551 Msa1352330:intron 30.0%
TGCATATGGTGATTTACATT+GGG + tig0012581:220533-220552 Msa1352330:intron 30.0%
GAGAGAAAAAATTTCAAAGC+AGG + tig0012581:220566-220585 Msa1352330:intron 30.0%
ATCAAAAGATATACTACCTC+TGG - tig0012581:220611-220630 None:intergenic 30.0%
TTGTGATTAGCAACATGATT+GGG + tig0012581:220693-220712 Msa1352330:intron 30.0%
AGTAGTGAATTCATGCAATT+TGG - tig0012581:221138-221157 None:intergenic 30.0%
AATCCAATTTCTCACATATG+TGG + tig0012581:221564-221583 Msa1352330:intron 30.0%
ATTCCACATATGTGAGAAAT+TGG - tig0012581:221570-221589 None:intergenic 30.0%
! TTTACAGGTACTTTTGATGA+TGG + tig0012581:221652-221671 Msa1352330:intron 30.0%
!! TTACAGGTACTTTTGATGAT+GGG + tig0012581:221653-221672 Msa1352330:intron 30.0%
! GTCTTGATTTTTGTATGCAT+AGG + tig0012581:221887-221906 Msa1352330:three_prime_UTR 30.0%
CATAATTATACTCTGATCTC+TGG + tig0012581:221961-221980 Msa1352330:three_prime_UTR 30.0%
CATAATTATACTCTGATCTC+TGG + tig0012581:221961-221980 Msa1352330:three_prime_UTR 30.0%
TTTATACATCCATGTTGTCA+AGG + tig0012581:222040-222059 Msa1352330:three_prime_UTR 30.0%
AGTGGAGAAAGAACAATTGT+TGG - tig0012581:218578-218597 None:intergenic 35.0%
! AGAGCACCTTATAGAATCAA+AGG - tig0012581:218701-218720 None:intergenic 35.0%
! GCCCTTTTGTCTATTCATTA+TGG - tig0012581:218777-218796 None:intergenic 35.0%
TGTCCAAAACAATACCCATA+TGG + tig0012581:218988-219007 Msa1352330:CDS 35.0%
!! AGTCCATATGGGTATTGTTT+TGG - tig0012581:218994-219013 None:intergenic 35.0%
CAAATTGTTCATGGGTGAAT+TGG + tig0012581:219305-219324 Msa1352330:intron 35.0%
! ATTGAAGCCTTTTCTGTTAG+GGG - tig0012581:219632-219651 None:intergenic 35.0%
! CAATTGAAGCCTTTTCTGTT+AGG - tig0012581:219634-219653 None:intergenic 35.0%
AACAGAAAAGGCTTCAATTG+AGG + tig0012581:219634-219653 Msa1352330:CDS 35.0%
ACTCAACAATTGAAAGCAAG+TGG + tig0012581:219674-219693 Msa1352330:CDS 35.0%
!! GTTTTCTGAGAAATCCATAG+AGG - tig0012581:219746-219765 None:intergenic 35.0%
TTTCTCAGAAAACCGTCATA+TGG + tig0012581:219753-219772 Msa1352330:CDS 35.0%
! ATGATGAAGAAAGTTGGTCT+AGG + tig0012581:219915-219934 Msa1352330:CDS 35.0%
! TGATGAAGAAAGTTGGTCTA+GGG + tig0012581:219916-219935 Msa1352330:CDS 35.0%
GGTTGCAGATATTGTTGAAA+AGG + tig0012581:220012-220031 Msa1352330:CDS 35.0%
CAGATATTGTTGAAAAGGGT+AGG + tig0012581:220017-220036 Msa1352330:CDS 35.0%
TTGGTTGGGTTCTACTAATT+TGG + tig0012581:220174-220193 Msa1352330:CDS 35.0%
GTGTTCTAACAAAATCATGG+TGG - tig0012581:220392-220411 None:intergenic 35.0%
GAGCAATTTCGTACATAAGT+AGG - tig0012581:220431-220450 None:intergenic 35.0%
ATAATTAGTACTAGAGCCAG+AGG + tig0012581:220592-220611 Msa1352330:intron 35.0%
CTTGTGATTAGCAACATGAT+TGG + tig0012581:220692-220711 Msa1352330:intron 35.0%
ATATCTGCATCTTCCAATTG+TGG + tig0012581:220852-220871 Msa1352330:CDS 35.0%
CACTTCATACTAACCACAAT+TGG - tig0012581:220868-220887 None:intergenic 35.0%
CAATTGTGGTTAGTATGAAG+TGG + tig0012581:220866-220885 Msa1352330:intron 35.0%
! GTATTCGCTTTGAATTCTCT+CGG + tig0012581:221066-221085 Msa1352330:intron 35.0%
TTCACTACTTGTGTTGTGTT+AGG + tig0012581:221149-221168 Msa1352330:intron 35.0%
TCACTACTTGTGTTGTGTTA+GGG + tig0012581:221150-221169 Msa1352330:intron 35.0%
GCACAACAAAGACTCAAATA+TGG - tig0012581:221305-221324 None:intergenic 35.0%
TAAGTAGAAATGGTGGTTGA+TGG - tig0012581:221613-221632 None:intergenic 35.0%
ATCCAACACATGTCACTAAA+TGG + tig0012581:221686-221705 Msa1352330:CDS 35.0%
TCCAACACATGTCACTAAAT+GGG + tig0012581:221687-221706 Msa1352330:CDS 35.0%
CTAAATGGGATATGAGAAGA+CGG + tig0012581:221701-221720 Msa1352330:CDS 35.0%
AAAATGCATTCTTCAAACGC+AGG + tig0012581:221807-221826 Msa1352330:CDS 35.0%
TAGAGAGAGAGAGAGAGATT+TGG + tig0012581:218311-218330 Msa1352330:five_prime_UTR 40.0%
ATTTGGATGGAGGTTTCAGA+GGG + tig0012581:218328-218347 Msa1352330:exon 40.0%
! GGTGGATTTGAAGTAACAAG+TGG - tig0012581:218545-218564 None:intergenic 40.0%
! TGTTACTTCAAATCCACCGA+TGG + tig0012581:218547-218566 Msa1352330:CDS 40.0%
ACAATTGTTGGTGTGACCAT+CGG - tig0012581:218566-218585 None:intergenic 40.0%
GGATTGTTGTCGAATAGTAC+CGG - tig0012581:218632-218651 None:intergenic 40.0%
AAAAGGGCAAAAGTGAGTCA+TGG + tig0012581:218789-218808 Msa1352330:intron 40.0%
! TTCACATTGGTAGCACAGAA+AGG + tig0012581:218912-218931 Msa1352330:intron 40.0%
!!! TTGTTTTGGACATGCTGTCT+GGG - tig0012581:218980-218999 None:intergenic 40.0%
!!! ATTGTTTTGGACATGCTGTC+TGG - tig0012581:218981-219000 None:intergenic 40.0%
! ATCAGAGTCCTCCTGTTTTA+CGG - tig0012581:219576-219595 None:intergenic 40.0%
TAAAACAGGAGGACTCTGAT+TGG + tig0012581:219576-219595 Msa1352330:intron 40.0%
AAAACAGGAGGACTCTGATT+GGG + tig0012581:219577-219596 Msa1352330:intron 40.0%
!! TTCAATTGAGGAGCACTTAG+AGG + tig0012581:219646-219665 Msa1352330:CDS 40.0%
TTTCTTCAAGGAAGCAGAGA+GGG - tig0012581:219714-219733 None:intergenic 40.0%
AGGACGTAATGGTTTCTTCA+AGG - tig0012581:219726-219745 None:intergenic 40.0%
AGAAACCATTACGTCCTCTA+TGG + tig0012581:219729-219748 Msa1352330:CDS 40.0%
GAAATCCATAGAGGACGTAA+TGG - tig0012581:219737-219756 None:intergenic 40.0%
AAGTACCTCACCATGATTCT+TGG + tig0012581:219783-219802 Msa1352330:CDS 40.0%
AGTACCTCACCATGATTCTT+GGG + tig0012581:219784-219803 Msa1352330:CDS 40.0%
AAATCCCAAGAATCATGGTG+AGG - tig0012581:219791-219810 None:intergenic 40.0%
GTGTGAAATCCCAAGAATCA+TGG - tig0012581:219796-219815 None:intergenic 40.0%
GAAGCAGAGACAAGTATGAT+TGG - tig0012581:219818-219837 None:intergenic 40.0%
TGGAATTATATACCAGGTGC+AGG + tig0012581:219890-219909 Msa1352330:CDS 40.0%
CAGGAGATGATGAAGAAAGT+TGG + tig0012581:219909-219928 Msa1352330:CDS 40.0%
! GATGAAGAAAGTTGGTCTAG+GGG + tig0012581:219917-219936 Msa1352330:CDS 40.0%
! GTTTAACTCCACCTCTCTTT+TGG + tig0012581:219939-219958 Msa1352330:CDS 40.0%
ACATGATTCCAAAAGAGAGG+TGG - tig0012581:219950-219969 None:intergenic 40.0%
CAACAATATCTGCAACCTTC+TGG - tig0012581:220009-220028 None:intergenic 40.0%
GGTTCTACTAATTTGGCAGT+TGG + tig0012581:220181-220200 Msa1352330:CDS 40.0%
TTGCCACATGTTTCGATTGA+TGG + tig0012581:220288-220307 Msa1352330:intron 40.0%
TCACCATCAATCGAAACATG+TGG - tig0012581:220294-220313 None:intergenic 40.0%
GTTGCTAATCACAAGTAGAC+TGG - tig0012581:220687-220706 None:intergenic 40.0%
TGCAGATATGCTTCTGAACT+GGG - tig0012581:220841-220860 None:intergenic 40.0%
ATGCAGATATGCTTCTGAAC+TGG - tig0012581:220842-220861 None:intergenic 40.0%
!! CAACGCTTCTTGTTGTTGAA+TGG + tig0012581:220892-220911 Msa1352330:intron 40.0%
CTTCTGGTCTGTTGTAATGA+TGG + tig0012581:221044-221063 Msa1352330:CDS 40.0%
ATCCTTCTAAATCATTCCGC+TGG + tig0012581:221334-221353 Msa1352330:intron 40.0%
! CTTTTAAATAGGTCGTCCAG+CGG - tig0012581:221353-221372 None:intergenic 40.0%
AGTGACATGTGTTGGATTGA+AGG - tig0012581:221683-221702 None:intergenic 40.0%
TCCCATTTAGTGACATGTGT+TGG - tig0012581:221691-221710 None:intergenic 40.0%
ACATCAATTGTGCCTCAACA+TGG + tig0012581:221934-221953 Msa1352330:three_prime_UTR 40.0%
GAGAGAGAGAGAGATTTGGA+TGG + tig0012581:218315-218334 Msa1352330:exon 45.0%
AGAGAGAGAGATTTGGATGG+AGG + tig0012581:218318-218337 Msa1352330:exon 45.0%
GATTTGGATGGAGGTTTCAG+AGG + tig0012581:218327-218346 Msa1352330:exon 45.0%
TTTGCGAGAAGAGGAAGTTG+AGG - tig0012581:218484-218503 None:intergenic 45.0%
CAAACCTTCGTTGTGGCTTA+TGG + tig0012581:218500-218519 Msa1352330:CDS 45.0%
AGTACCATAAGCCACAACGA+AGG - tig0012581:218507-218526 None:intergenic 45.0%
! ACATTGGTAGCACAGAAAGG+TGG + tig0012581:218915-218934 Msa1352330:intron 45.0%
CTCTTTGCACCTACCACTTT+GGG + tig0012581:219604-219623 Msa1352330:CDS 45.0%
TTGGGTTCCCCTAACAGAAA+AGG + tig0012581:219622-219641 Msa1352330:CDS 45.0%
!! TTGAGGAGCACTTAGAGGAA+TGG + tig0012581:219651-219670 Msa1352330:CDS 45.0%
GTTTCTTCAAGGAAGCAGAG+AGG - tig0012581:219715-219734 None:intergenic 45.0%
TCTGCTTCTTCTTCGTCGAA+CGG + tig0012581:219830-219849 Msa1352330:CDS 45.0%
!! CGGAGTTAGTCTTGTTGTGT+TGG - tig0012581:219862-219881 None:intergenic 45.0%
AGACTAACTCCGAGTTTAGC+TGG + tig0012581:219870-219889 Msa1352330:CDS 45.0%
TCCTGATGTGTGTAACCAGA+AGG + tig0012581:219991-220010 Msa1352330:CDS 45.0%
! ACCTTCTGGTTACACACATC+AGG - tig0012581:219995-220014 None:intergenic 45.0%
CACTCTCTCCTCTATAAGCA+CGG - tig0012581:220048-220067 None:intergenic 45.0%
TTCACATGAAGAACCGTCAC+TGG + tig0012581:220093-220112 Msa1352330:CDS 45.0%
GAAACATCAGAAGCCAGTGA+CGG - tig0012581:220109-220128 None:intergenic 45.0%
! GCAGTTGGTGCATCTCAATT+TGG + tig0012581:220196-220215 Msa1352330:CDS 45.0%
!! TCACAAGTAGACTGGTCTTC+TGG - tig0012581:220679-220698 None:intergenic 45.0%
TGTGGCTGAGTGTTCATGTT+TGG + tig0012581:220745-220764 Msa1352330:intron 45.0%
GTCCAGCGGAATGATTTAGA+AGG - tig0012581:221339-221358 None:intergenic 45.0%
GACCATGCAGAGGAAATTTG+AGG + tig0012581:221758-221777 Msa1352330:CDS 45.0%
TGCCTCAAATTTCCTCTGCA+TGG - tig0012581:221763-221782 None:intergenic 45.0%
ATGCATTCTTCAAACGCAGG+AGG + tig0012581:221810-221829 Msa1352330:CDS 45.0%
ATTCTTCAAACGCAGGAGGA+CGG + tig0012581:221814-221833 Msa1352330:CDS 45.0%
ACATCCATGTTGTCAAGGCA+CGG + tig0012581:222045-222064 Msa1352330:three_prime_UTR 45.0%
CAACGAAGGTTTGCGAGAAG+AGG - tig0012581:218493-218512 None:intergenic 50.0%
CTTCTCGCAAACCTTCGTTG+TGG + tig0012581:218493-218512 Msa1352330:CDS 50.0%
ATTGTTGGTGTGACCATCGG+TGG - tig0012581:218563-218582 None:intergenic 50.0%
ATGAAGGTTGAGACGAGCAG+TGG - tig0012581:218596-218615 None:intergenic 50.0%
TGCTCGTCTCAACCTTCATG+TGG + tig0012581:218597-218616 Msa1352330:CDS 50.0%
CTTCATGTGGCTCATCTTGC+CGG + tig0012581:218610-218629 Msa1352330:CDS 50.0%
TGCTGTTGCCTCCGTAAAAC+AGG + tig0012581:219562-219581 Msa1352330:intron 50.0%
TGTTGCCTCCGTAAAACAGG+AGG + tig0012581:219565-219584 Msa1352330:intron 50.0%
! AGAGTCCTCCTGTTTTACGG+AGG - tig0012581:219573-219592 None:intergenic 50.0%
GCTCTTTGCACCTACCACTT+TGG + tig0012581:219603-219622 Msa1352330:CDS 50.0%
TTAGGGGAACCCAAAGTGGT+AGG - tig0012581:219616-219635 None:intergenic 50.0%
TCTGTTAGGGGAACCCAAAG+TGG - tig0012581:219620-219639 None:intergenic 50.0%
TCTTCATCATCTCCTGCACC+TGG - tig0012581:219905-219924 None:intergenic 50.0%
CACGTGCACACACATGCATA+TGG + tig0012581:220519-220538 Msa1352330:intron 50.0%
ACTGGGAAGACAGACAGTGA+TGG - tig0012581:220824-220843 None:intergenic 50.0%
TTGGCGAAGCTCACAGCTTT+AGG - tig0012581:220999-221018 None:intergenic 50.0%
GCCAAGTTCAACCTCAGTCT+GGG + tig0012581:221014-221033 Msa1352330:CDS 50.0%
TCCCAGACTGAGGTTGAACT+TGG - tig0012581:221018-221037 None:intergenic 50.0%
!! GAAGTCGTTTTCCCAGACTG+AGG - tig0012581:221028-221047 None:intergenic 50.0%
CAGTCTGGGAAAACGACTTC+TGG + tig0012581:221028-221047 Msa1352330:CDS 50.0%
ACAAATGCACGACCATGCAG+AGG + tig0012581:221748-221767 Msa1352330:CDS 50.0%
ACTACCGTGCCTTGACAACA+TGG - tig0012581:222052-222071 None:intergenic 50.0%
CGGCAAGATGAGCCACATGA+AGG - tig0012581:218612-218631 None:intergenic 55.0%
AGGGTACGCCGTGCTTATAG+AGG + tig0012581:220037-220056 Msa1352330:CDS 55.0%
CGCCAAGTTCAACCTCAGTC+TGG + tig0012581:221013-221032 Msa1352330:CDS 55.0%
TCAAACGCAGGAGGACGGTG+AGG + tig0012581:221819-221838 Msa1352330:CDS 60.0%
ACGCAGGAGGACGGTGAGGA+CGG + tig0012581:221823-221842 Msa1352330:CDS 65.0%
CAGGAGGACGGTGAGGACGG+TGG + tig0012581:221826-221845 Msa1352330:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0012581 gene 218267 222148 218267 ID=Msa1352330;Name=Msa1352330
tig0012581 mRNA 218267 222148 218267 ID=Msa1352330-mRNA-1;Parent=Msa1352330;Name=Msa1352330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=67|1|1|1|0.85|0.75|8|231|522
tig0012581 exon 218267 218631 218267 ID=Msa1352330-mRNA-1:exon:8085;Parent=Msa1352330-mRNA-1
tig0012581 exon 218925 219088 218925 ID=Msa1352330-mRNA-1:exon:8086;Parent=Msa1352330-mRNA-1
tig0012581 exon 219584 220217 219584 ID=Msa1352330-mRNA-1:exon:8087;Parent=Msa1352330-mRNA-1
tig0012581 exon 220773 220873 220773 ID=Msa1352330-mRNA-1:exon:8088;Parent=Msa1352330-mRNA-1
tig0012581 exon 220957 221065 220957 ID=Msa1352330-mRNA-1:exon:8089;Parent=Msa1352330-mRNA-1
tig0012581 exon 221457 221516 221457 ID=Msa1352330-mRNA-1:exon:8090;Parent=Msa1352330-mRNA-1
tig0012581 exon 221659 221982 221659 ID=Msa1352330-mRNA-1:exon:8091;Parent=Msa1352330-mRNA-1
tig0012581 exon 222039 222148 222039 ID=Msa1352330-mRNA-1:exon:8092;Parent=Msa1352330-mRNA-1
tig0012581 five_prime_UTR 218267 218333 218267 ID=Msa1352330-mRNA-1:five_prime_utr;Parent=Msa1352330-mRNA-1
tig0012581 CDS 218334 218631 218334 ID=Msa1352330-mRNA-1:cds;Parent=Msa1352330-mRNA-1
tig0012581 CDS 218925 219088 218925 ID=Msa1352330-mRNA-1:cds;Parent=Msa1352330-mRNA-1
tig0012581 CDS 219584 220217 219584 ID=Msa1352330-mRNA-1:cds;Parent=Msa1352330-mRNA-1
tig0012581 CDS 220773 220873 220773 ID=Msa1352330-mRNA-1:cds;Parent=Msa1352330-mRNA-1
tig0012581 CDS 220957 221065 220957 ID=Msa1352330-mRNA-1:cds;Parent=Msa1352330-mRNA-1
tig0012581 CDS 221457 221516 221457 ID=Msa1352330-mRNA-1:cds;Parent=Msa1352330-mRNA-1
tig0012581 CDS 221659 221861 221659 ID=Msa1352330-mRNA-1:cds;Parent=Msa1352330-mRNA-1
tig0012581 three_prime_UTR 221862 221982 221862 ID=Msa1352330-mRNA-1:three_prime_utr;Parent=Msa1352330-mRNA-1
tig0012581 three_prime_UTR 222039 222148 222039 ID=Msa1352330-mRNA-1:three_prime_utr;Parent=Msa1352330-mRNA-1
Gene Sequence

>Msa1352330

ATGGAGGTTTCAGAGGGAGAATTTTCGAAGAAGCTAAGCATATACAAAGCAGCAAGAAGCATTAAAAAAAGAGACAACAGTTTATACAACGCACTTAGATCTATCTATCAAGATTCTGTTTTCGTTGGTGAAATCTCTCAATTATGGCCTCAACTTCCTCTTCTCGCAAACCTTCGTTGTGGCTTATGGTACTCTTCTAATTTCCATTCCACTTGTTACTTCAAATCCACCGATGGTCACACCAACAATTGTTCTTTCTCCACTGCTCGTCTCAACCTTCATGTGGCTCATCTTGCCGCACAGAAAGGTGGTTGTATGATTGTTGATTCTACTAGAAAAGGAAAGCGTTTCCCAGACAGCATGTCCAAAACAATACCCATATGGACTTGTGTTCTTAATCGTGCAATTGCCCAATTTAAAAGAGATTTTCATATGGATGATGCTTCAGCACCACAATTGAGTGAGGACTCTGATTGGGATTGCTCTTTGCACCTACCACTTTGGGTTCCCCTAACAGAAAAGGCTTCAATTGAGGAGCACTTAGAGGAATGGACTCAACAATTGAAAGCAAGTGGAGCTGACATTGCTTCCCTCTCTGCTTCCTTGAAGAAACCATTACGTCCTCTATGGATTTCTCAGAAAACCGTCATATGGTTAAATGAAGTACCTCACCATGATTCTTGGGATTTCACACCAATCATACTTGTCTCTGCTTCTTCTTCGTCGAACGGTGTAAGCCAACACAACAAGACTAACTCCGAGTTTAGCTGGAATTATATACCAGGTGCAGGAGATGATGAAGAAAGTTGGTCTAGGGGTTTAACTCCACCTCTCTTTTGGAATCATGTTTATGATCTTATAAATTCAGGTCCTGATGTGTGTAACCAGAAGGTTGCAGATATTGTTGAAAAGGGTAGGGTACGCCGTGCTTATAGAGGAGAGAGTGCTCCTCAGATTAGAGTTAAATCACTTTCACATGAAGAACCGTCACTGGCTTCTGATGTTTCAAATATTGAAGTTGACACCAAGTCTTTTGAAGATTCTGAAATTTCTTGGTTGGGTTCTACTAATTTGGCAGTTGGTGCATCTCAATTTGCTACAGATGCAGCCGATGTTGATTGCATATTGAATTGTGATTGTGAGTCCATCACTGTCTGTCTTCCCAGTTCAGAAGCATATCTGCATCTTCCAATTGTGAGTTCAAAGTTTGATCGCTTTTCCTTATTAAATAATATTCCTAAAGCTGTGAGCTTCGCCAAGTTCAACCTCAGTCTGGGAAAACGACTTCTGGTCTGTTGTAATGATGGGGAAGATATTAGTATATGTGTTTGCTTAGCAATTTTGATGTCACTATTTGATGAAAAAGGTACTTTTGATGATGGGAATTCCTTCAATCCAACACATGTCACTAAATGGGATATGAGAAGACGGCTTGTATTTGTCTGTAAGTTTGCGACAAATGCACGACCATGCAGAGGAAATTTGAGGCAAGTATTTAACTTTCTTATTGGCGGAAAATGCATTCTTCAAACGCAGGAGGACGGTGAGGACGGTGGCAGTGATGAGTGA

Protein sequence

>Msa1352330

MEVSEGEFSKKLSIYKAARSIKKRDNSLYNALRSIYQDSVFVGEISQLWPQLPLLANLRCGLWYSSNFHSTCYFKSTDGHTNNCSFSTARLNLHVAHLAAQKGGCMIVDSTRKGKRFPDSMSKTIPIWTCVLNRAIAQFKRDFHMDDASAPQLSEDSDWDCSLHLPLWVPLTEKASIEEHLEEWTQQLKASGADIASLSASLKKPLRPLWISQKTVIWLNEVPHHDSWDFTPIILVSASSSSNGVSQHNKTNSEFSWNYIPGAGDDEESWSRGLTPPLFWNHVYDLINSGPDVCNQKVADIVEKGRVRRAYRGESAPQIRVKSLSHEEPSLASDVSNIEVDTKSFEDSEISWLGSTNLAVGASQFATDAADVDCILNCDCESITVCLPSSEAYLHLPIVSSKFDRFSLLNNIPKAVSFAKFNLSLGKRLLVCCNDGEDISICVCLAILMSLFDEKGTFDDGNSFNPTHVTKWDMRRRLVFVCKFATNARPCRGNLRQVFNFLIGGKCILQTQEDGEDGGSDE*