AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0927670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927670 MtrunA17_Chr6g0485111 90.547 402 2 2 1 366 1 402 0.0 725
Msa0927670 MtrunA17_Chr8g0390691 68.408 402 86 5 1 366 1 397 0.0 523
Msa0927670 MtrunA17_Chr1g0169271 44.000 375 165 8 28 364 43 410 3.77e-95 290
Msa0927670 MtrunA17_Chr2g0287641 30.952 294 176 5 94 362 116 407 1.52e-42 152
Msa0927670 MtrunA17_Chr7g0237091 30.105 382 209 11 36 362 31 409 2.46e-36 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927670 AT3G24460.2 59.701 402 119 5 6 366 8 407 1.07e-171 484
Msa0927670 AT3G24460.1 59.701 402 119 5 6 366 8 407 1.07e-171 484
Msa0927670 AT4G13345.1 61.519 395 113 4 5 363 2 393 2.63e-168 475
Msa0927670 AT4G13345.2 61.266 395 114 4 5 363 2 393 2.10e-167 473
Msa0927670 AT4G13345.6 61.266 395 114 4 5 363 2 393 2.10e-167 473
Msa0927670 AT4G13345.4 61.316 380 108 4 5 348 2 378 2.13e-159 453
Msa0927670 AT4G13345.5 59.831 356 104 5 5 324 2 354 6.70e-142 407
Msa0927670 AT2G33205.1 45.093 377 165 7 27 365 40 412 1.15e-99 301
Msa0927670 AT2G33205.8 44.444 378 168 7 27 365 40 414 2.72e-98 298
Msa0927670 AT2G33205.5 44.444 378 168 7 27 365 40 414 2.72e-98 298
Msa0927670 AT4G13345.3 55.208 288 91 3 17 268 14 299 4.66e-98 293
Msa0927670 AT4G13345.7 55.208 288 91 3 17 268 14 299 4.66e-98 293
Msa0927670 AT2G33205.9 43.767 361 161 7 27 348 40 397 9.76e-92 281
Msa0927670 AT2G33205.7 50.000 276 130 4 96 364 29 303 1.37e-87 267
Msa0927670 AT2G33205.2 50.000 276 130 4 96 364 44 318 1.93e-87 267
Msa0927670 AT2G33205.6 41.840 337 154 7 27 324 40 373 3.53e-76 240
Msa0927670 AT2G33205.3 38.832 291 137 6 27 279 40 327 4.10e-53 179
Msa0927670 AT2G33205.4 38.832 291 137 6 27 279 40 327 4.10e-53 179
Msa0927670 AT3G06170.1 31.333 300 172 7 91 362 114 407 1.47e-35 134
Msa0927670 AT1G16180.2 32.323 297 168 7 94 362 120 411 1.31e-32 126
Msa0927670 AT1G16180.1 32.323 297 168 7 94 362 120 411 1.31e-32 126

Find 91 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAGATTCCAAATGCTTTC+AGG 0.181659 6_2:+72171098 Msa0927670:CDS
GCAGGGGAAGTTGCACATTT+TGG 0.202942 6_2:+72168681 Msa0927670:intron
ACTATCTGATAGATCAAAAT+TGG 0.241729 6_2:-72172610 None:intergenic
TGTTGGCAGAGCTTTGTTAT+TGG 0.269454 6_2:+72171039 Msa0927670:intron
CTGATGCATTGATCTCCTTC+TGG 0.269494 6_2:-72170287 None:intergenic
TTATGCTTACTAGTTGAATT+AGG 0.274629 6_2:-72168810 None:intergenic
AGCAATTTAGTCTATGATAT+TGG 0.274697 6_2:+72165180 Msa0927670:five_prime_UTR
TCTGAATTGATTGATCTCTA+TGG 0.290027 6_2:+72168399 Msa0927670:CDS
TTTCTCTTGTTTCTCTCAAT+TGG 0.293298 6_2:+72165119 Msa0927670:five_prime_UTR
GAGATACACTTGTCATGATT+TGG 0.294464 6_2:-72169395 None:intergenic
CCTTGAAAGGGACAACAATA+TGG 0.307837 6_2:+72164894 None:intergenic
TATATGTTGTCTTCCTTTGT+TGG 0.308105 6_2:+72169585 Msa0927670:CDS
AGGATATATGAACATGTAAA+TGG 0.325827 6_2:-72172750 None:intergenic
CAAATACCATCACATGGATT+TGG 0.338082 6_2:-72169257 None:intergenic
GATGATGTTCCATATGGATA+TGG 0.339974 6_2:+72171238 Msa0927670:CDS
CAAAGTTGGAAAAGACTGTT+TGG 0.346464 6_2:+72167919 Msa0927670:CDS
CCTTTAGTCCACAACCTTGT+TGG 0.356113 6_2:-72167567 None:intergenic
TATTTCTGTGTACCATCCTT+TGG 0.358026 6_2:-72172723 None:intergenic
GAAACAAACCTGAAAGCATT+TGG 0.361917 6_2:-72171106 None:intergenic
TTGATGGCAAGATATGTCTA+TGG 0.370296 6_2:+72167631 Msa0927670:CDS
TACTTTGCAATGCTATTGAT+TGG 0.370812 6_2:+72171295 Msa0927670:CDS
ATGAAGCATATAAGCTTATA+CGG 0.380266 6_2:+72164937 Msa0927670:five_prime_UTR
AAATGCATCAAATCCTTTGA+TGG 0.383037 6_2:+72167615 Msa0927670:CDS
TTAATGTTGTTGCTTTCTCT+TGG 0.384289 6_2:-72167538 None:intergenic
GGGCAACAAAGATTGTTCTA+TGG 0.386886 6_2:+72168343 Msa0927670:intron
GCATAATCAGCTTCATTACT+TGG 0.389215 6_2:+72168827 Msa0927670:CDS
CGTTACTTACAATCATTAGA+TGG 0.393097 6_2:+72172777 Msa0927670:three_prime_UTR
TGGGTTCTTGTAGAAGTCTA+TGG 0.393716 6_2:+72172851 Msa0927670:three_prime_UTR
ATGTGGGCTGGACCAGTGCT+TGG 0.396466 6_2:+72171724 Msa0927670:CDS
ATTTATCAGTTCAATGCATT+GGG 0.400158 6_2:+72172832 Msa0927670:three_prime_UTR
TGTCTTGCCTTCCATACAAT+TGG 0.400690 6_2:-72172524 None:intergenic
AATTTATCAGTTCAATGCAT+TGG 0.413494 6_2:+72172831 Msa0927670:three_prime_UTR
GTGGACTAAAGGATTCTTCA+TGG 0.420163 6_2:+72167578 Msa0927670:CDS
CATGTGATGGTATTTGCAAC+AGG 0.432557 6_2:+72169264 Msa0927670:CDS
GGAACATCATCTTCTTCTGC+TGG 0.439187 6_2:-72171226 None:intergenic
TGAATAGTGTGTAACATTAG+TGG 0.445733 6_2:+72167500 Msa0927670:five_prime_UTR
TTTACATGTTCATATATCCT+TGG 0.449738 6_2:+72172753 Msa0927670:three_prime_UTR
CTGCAGATGGTCACTTGATG+TGG 0.452717 6_2:+72171707 Msa0927670:intron
ACATATAGCCCCATCAATCC+TGG 0.458090 6_2:-72169569 None:intergenic
CTAATTTCAACAATAAGAAT+AGG 0.458367 6_2:-72172889 None:intergenic
TAGCTGCTAATATGTTGGCA+TGG 0.464913 6_2:+72167665 Msa0927670:CDS
GAAGAAGATGATGTTCCATA+TGG 0.466677 6_2:+72171232 Msa0927670:CDS
TGCTGATAGCTCCAATTGTA+TGG 0.471218 6_2:+72172513 Msa0927670:CDS
CCAACAAGGTTGTGGACTAA+AGG 0.475753 6_2:+72167567 Msa0927670:CDS
GATCAATGCATCAGAACATC+AGG 0.477126 6_2:+72170296 Msa0927670:CDS
TTGCAATGCTATTGATTGGA+TGG 0.487844 6_2:+72171299 Msa0927670:CDS
AGAATAGAAGATCTTCTTAG+TGG 0.490986 6_2:+72167432 Msa0927670:five_prime_UTR
CTATTCAAGTATATGATCAA+TGG 0.495256 6_2:-72167484 None:intergenic
ATTATGCTCGTACTATGTAA+TGG 0.495790 6_2:+72172581 Msa0927670:three_prime_UTR
GATGGTCACTTGATGTGGGC+TGG 0.502453 6_2:+72171712 Msa0927670:intron
TGTGGGCTGGACCAGTGCTT+GGG 0.503046 6_2:+72171725 Msa0927670:CDS
TACTATTCTGACCCAAGCAC+TGG 0.503124 6_2:-72171736 None:intergenic
CATTAATTTGCAGCTAAGGA+AGG 0.506153 6_2:+72171195 Msa0927670:intron
CATTTGTGCTAGAATCCAAT+TGG 0.512599 6_2:-72172650 None:intergenic
TCTGTGTACCATCCTTTGGA+TGG 0.517292 6_2:-72172719 None:intergenic
TGCAGATGGTCACTTGATGT+GGG 0.517995 6_2:+72171708 Msa0927670:intron
CAGAATAGTAAATGAATGGT+TGG 0.523254 6_2:+72171749 Msa0927670:CDS
AGTGAAGAAATTAAAAGAGA+AGG 0.524149 6_2:-72165011 None:intergenic
TTGAGGAGGCATGATGGTAT+TGG 0.529147 6_2:-72169339 None:intergenic
TGCTTACTAGTTGAATTAGG+AGG 0.533605 6_2:-72168807 None:intergenic
AAAGTTGGAAAAGACTGTTT+GGG 0.535404 6_2:+72167920 Msa0927670:CDS
TAGTGCATTGACTGAACTCA+AGG 0.537938 6_2:+72167714 Msa0927670:CDS
AATAGTAACCAACAAGGTTG+TGG 0.539024 6_2:+72167559 Msa0927670:CDS
TAGAGATCAATCAATTCAGA+AGG 0.539665 6_2:-72168396 None:intergenic
AGCTGCTAATATGTTGGCAT+GGG 0.541683 6_2:+72167666 Msa0927670:CDS
ATTAATTTGCAGCTAAGGAA+GGG 0.543167 6_2:+72171196 Msa0927670:intron
TTCTGATTGCACACCAACAA+AGG 0.551050 6_2:-72169598 None:intergenic
GGGTCAGAATAGTAAATGAA+TGG 0.552152 6_2:+72171745 Msa0927670:CDS
AGAAATTAAAAGAGAAGGAG+TGG 0.558708 6_2:-72165006 None:intergenic
TAGACATATCTTGCCATCAA+AGG 0.559648 6_2:-72167628 None:intergenic
GATAGCTCCAATTGTATGGA+AGG 0.571406 6_2:+72172517 Msa0927670:CDS
CTCTCATTCCATCCAAAGGA+TGG 0.589491 6_2:+72172711 Msa0927670:three_prime_UTR
TTGTGTCAATAGGTAAATGG+TGG 0.592494 6_2:+72169536 Msa0927670:intron
CATCCTTTGGATGGAATGAG+AGG 0.592659 6_2:-72172710 None:intergenic
AATATGTTGAGGAGGCATGA+TGG 0.594347 6_2:-72169345 None:intergenic
CTGTTGCAAATACCATCACA+TGG 0.597757 6_2:-72169263 None:intergenic
AGAAGATCTTCTTAGTGGAG+TGG 0.604451 6_2:+72167437 Msa0927670:five_prime_UTR
TACATAGTACGAGCATAATG+AGG 0.608914 6_2:-72172577 None:intergenic
AATTAAAAGAGAAGGAGTGG+TGG 0.612518 6_2:-72165003 None:intergenic
ACTCCTCTCATTCCATCCAA+AGG 0.616042 6_2:+72172707 Msa0927670:three_prime_UTR
ATGATTGTAAGTAACGTCCA+AGG 0.630967 6_2:-72172770 None:intergenic
GTGCAGCCAAATCCATGTGA+TGG 0.636534 6_2:+72169251 Msa0927670:intron
TGCAAAGTACATAGCTCCTG+TGG 0.637719 6_2:-72171281 None:intergenic
GCACTGTAACCAAAACAGAC+TGG 0.637874 6_2:+72170318 Msa0927670:CDS
AGTGCATTGACTGAACTCAA+GGG 0.641155 6_2:+72167715 Msa0927670:CDS
TGTGCATGCAGTGAACCAGA+AGG 0.646240 6_2:+72170272 Msa0927670:intron
AAAGGGACAACAATATGGAG+AGG 0.654825 6_2:+72164899 None:intergenic
AGAGATCAATCAATTCAGAA+GGG 0.664107 6_2:-72168395 None:intergenic
AAAGACTGTTTGGGAGCACA+TGG 0.665233 6_2:+72167929 Msa0927670:CDS
TATTGGATTAACATATACAA+AGG 0.674358 6_2:+72165197 Msa0927670:five_prime_UTR
AACATTAATAGTAACCAACA+AGG 0.715322 6_2:+72167553 Msa0927670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAACAAAACAAAATT+TGG + chr6_2:72165695-72165714 Msa0927670:intron 10.0%
!!! TTTTTCAATAAAAAATGAAA+AGG - chr6_2:72166126-72166145 None:intergenic 10.0%
!!! CTTCTTTTTAAATTAAATTA+TGG + chr6_2:72166420-72166439 Msa0927670:intron 10.0%
!!! TCTCTTTAAAAAATATTTAA+TGG - chr6_2:72166475-72166494 None:intergenic 10.0%
!! ATTGTAAAAAAAAGATATTT+AGG - chr6_2:72166586-72166605 None:intergenic 10.0%
!!! AGTTGTTTATTTATTTATTT+TGG + chr6_2:72167272-72167291 Msa0927670:intron 10.0%
!!! GTTGTTTATTTATTTATTTT+GGG + chr6_2:72167273-72167292 Msa0927670:intron 10.0%
!!! ATTGAAATTTTATTTGATAA+AGG - chr6_2:72167987-72168006 None:intergenic 10.0%
!! ATCAAATAAAATTTCAATTA+TGG + chr6_2:72167989-72168008 Msa0927670:intron 10.0%
!! TCAAATAAAATTTCAATTAT+GGG + chr6_2:72167990-72168009 Msa0927670:intron 10.0%
!!! CTCTATTATATATTTAAAAT+AGG + chr6_2:72168594-72168613 Msa0927670:intron 10.0%
!!! AATTATTATCTATATTTTTC+AGG + chr6_2:72168779-72168798 Msa0927670:intron 10.0%
!!! ATTATTATCTATATTTTTCA+GGG + chr6_2:72168780-72168799 Msa0927670:intron 10.0%
!! AAATTTAAAAATGCAAAAAA+AGG - chr6_2:72169634-72169653 None:intergenic 10.0%
!! ATATTCAATAGAAATAAAAA+GGG - chr6_2:72170235-72170254 None:intergenic 10.0%
!! TATATTCAATAGAAATAAAA+AGG - chr6_2:72170236-72170255 None:intergenic 10.0%
!!! GTATGAATTTTTTATTTTAT+TGG - chr6_2:72170667-72170686 None:intergenic 10.0%
!! ATAAAATATGTGTTTATGAA+AGG - chr6_2:72165267-72165286 None:intergenic 15.0%
!!! TTTTATCAATCTTTTATTGA+TGG + chr6_2:72166027-72166046 Msa0927670:intron 15.0%
!!! CTTTTTTAATTTTCAATTGT+TGG - chr6_2:72166227-72166246 None:intergenic 15.0%
!!! TTATTTATTTATTTTGGGAA+AGG + chr6_2:72167278-72167297 Msa0927670:intron 15.0%
!!! TATTTTTTATGATGATGTTT+TGG + chr6_2:72168262-72168281 Msa0927670:intron 15.0%
!!! TGACATAATTACTTTTTTTT+GGG + chr6_2:72168659-72168678 Msa0927670:intron 15.0%
!!! TAAGAGTATTTTTATAAGAA+AGG - chr6_2:72168962-72168981 None:intergenic 15.0%
!!! TAAATAAAACACATACTTTT+GGG - chr6_2:72169425-72169444 None:intergenic 15.0%
!!! TTAAATAAAACACATACTTT+TGG - chr6_2:72169426-72169445 None:intergenic 15.0%
!!! AAAATTGGTTTTGATTAAAT+TGG + chr6_2:72169710-72169729 Msa0927670:intron 15.0%
!!! TTTTCATATTAAAAATGTCT+CGG + chr6_2:72170051-72170070 Msa0927670:intron 15.0%
!!! TTATGTTTGTTTATGTATTT+TGG + chr6_2:72170421-72170440 Msa0927670:intron 15.0%
!!! CAATATTAAAATCAAACTTT+TGG + chr6_2:72171128-72171147 Msa0927670:intron 15.0%
!!! AGTTTTTTTTTTCCTTTTTT+CGG + chr6_2:72171790-72171809 Msa0927670:intron 15.0%
!!! TTCATTTTTTAAACTACTAT+TGG + chr6_2:72172104-72172123 Msa0927670:intron 15.0%
!! TATTGGATTAACATATACAA+AGG + chr6_2:72165197-72165216 Msa0927670:five_prime_UTR 20.0%
!! TAAACATATGAAAAAACATG+AGG - chr6_2:72165361-72165380 None:intergenic 20.0%
!! AAAATGAGAGAAAATGTTTA+AGG - chr6_2:72165393-72165412 None:intergenic 20.0%
!!! TATGTCATTTTGTTTTTGAA+TGG + chr6_2:72165521-72165540 Msa0927670:intron 20.0%
!! AAGATTAATGACATAAAAAC+AGG - chr6_2:72165547-72165566 None:intergenic 20.0%
!!! GTTTTTATGTCATTAATCTT+TGG + chr6_2:72165547-72165566 Msa0927670:intron 20.0%
!! CAAACTAATAATTCAAAGAA+TGG - chr6_2:72165623-72165642 None:intergenic 20.0%
!!! TTACTTTACTTTATTTTCCA+GGG - chr6_2:72166097-72166116 None:intergenic 20.0%
!!! ATTACTTTACTTTATTTTCC+AGG - chr6_2:72166098-72166117 None:intergenic 20.0%
!!! TTTTAATTTTCAATTGTTGG+AGG - chr6_2:72166224-72166243 None:intergenic 20.0%
!!! GTTTTTTCTTTCTTATTTTG+AGG + chr6_2:72166319-72166338 Msa0927670:intron 20.0%
!!! TTTAAAGACAAATTTTGTTG+AGG + chr6_2:72166552-72166571 Msa0927670:intron 20.0%
!!! GTTTTAGAAATTTTTTTGAG+AGG + chr6_2:72166694-72166713 Msa0927670:intron 20.0%
!!! TGTTCTATGGAATTTTATTT+TGG + chr6_2:72166887-72166906 Msa0927670:intron 20.0%
!!! GTTCTATGGAATTTTATTTT+GGG + chr6_2:72166888-72166907 Msa0927670:intron 20.0%
!!! TTCTATGGAATTTTATTTTG+GGG + chr6_2:72166889-72166908 Msa0927670:intron 20.0%
!! AAGAAGAAAAAATCTATGAT+GGG + chr6_2:72167058-72167077 Msa0927670:intron 20.0%
!! TTCAGTTGAATTTCTAAATT+AGG + chr6_2:72167200-72167219 Msa0927670:intron 20.0%
!! TCAGTTGAATTTCTAAATTA+GGG + chr6_2:72167201-72167220 Msa0927670:intron 20.0%
!!! TAACGAATTTTCCATAAAAT+TGG + chr6_2:72167368-72167387 Msa0927670:intron 20.0%
!! AATTTATCAATTGACTATAG+AGG - chr6_2:72167810-72167829 None:intergenic 20.0%
!! TCTAACAAATATTGAATTAC+AGG + chr6_2:72167884-72167903 Msa0927670:intron 20.0%
!!! CATATATATAGTCTAGTTTA+TGG + chr6_2:72168013-72168032 Msa0927670:intron 20.0%
!!! ATATGATATAGTCTAGTTTA+TGG + chr6_2:72168047-72168066 Msa0927670:intron 20.0%
!! ACAATGCATTATTATATACA+GGG + chr6_2:72168139-72168158 Msa0927670:intron 20.0%
!! AAATAGCTAATCAAGAATTA+AGG - chr6_2:72168247-72168266 None:intergenic 20.0%
!! CAAACATAGAGATTAATAAT+TGG - chr6_2:72168443-72168462 None:intergenic 20.0%
!!! TTCAATTGCTTTAAAATTGT+CGG - chr6_2:72168520-72168539 None:intergenic 20.0%
!! AAAAAAAGTAATTATGTCAG+AGG - chr6_2:72168658-72168677 None:intergenic 20.0%
!!! CTGACATAATTACTTTTTTT+TGG + chr6_2:72168658-72168677 Msa0927670:intron 20.0%
!!! ATTTTTATCGATTTGTGTTA+GGG + chr6_2:72169778-72169797 Msa0927670:intron 20.0%
!!! TTTTAGTAGAATTGACTTTA+GGG + chr6_2:72169831-72169850 Msa0927670:intron 20.0%
!! ACTTTCGAAAATCAAATTTA+AGG - chr6_2:72169920-72169939 None:intergenic 20.0%
!! TTTCATATTAAAAATGTCTC+GGG + chr6_2:72170052-72170071 Msa0927670:intron 20.0%
!!! ACATATTTTTCTAACTAGTT+TGG + chr6_2:72170461-72170480 Msa0927670:intron 20.0%
!! TCATTGGAAACATATTTATT+GGG - chr6_2:72171471-72171490 None:intergenic 20.0%
!! TTCATTGGAAACATATTTAT+TGG - chr6_2:72171472-72171491 None:intergenic 20.0%
!!! AAGAACAGCTATAAATTTTT+TGG + chr6_2:72171674-72171693 Msa0927670:intron 20.0%
!!! CAATGTTCATAGATTTTTTT+TGG + chr6_2:72172136-72172155 Msa0927670:intron 20.0%
!!! AGGTTTTCACTAAAAAAAAA+TGG - chr6_2:72172430-72172449 None:intergenic 20.0%
!!! TTCTTATCATTTTTACAGTA+TGG + chr6_2:72172489-72172508 Msa0927670:intron 20.0%
!! CTAATTTCAACAATAAGAAT+AGG - chr6_2:72172892-72172911 None:intergenic 20.0%
! ATGAAGCATATAAGCTTATA+CGG + chr6_2:72164937-72164956 Msa0927670:five_prime_UTR 25.0%
! AGTGAAGAAATTAAAAGAGA+AGG - chr6_2:72165014-72165033 None:intergenic 25.0%
! AGCAATTTAGTCTATGATAT+TGG + chr6_2:72165180-72165199 Msa0927670:five_prime_UTR 25.0%
! ATTCATTCTCATAAGAAACA+TGG - chr6_2:72165322-72165341 None:intergenic 25.0%
! TTCAAAGAATGGTGAATATA+TGG - chr6_2:72165612-72165631 None:intergenic 25.0%
! ACATATATGAACATGTTTGA+TGG + chr6_2:72165667-72165686 Msa0927670:intron 25.0%
! CATATATGAACATGTTTGAT+GGG + chr6_2:72165668-72165687 Msa0927670:intron 25.0%
!!! CTATGTTTACTTTTGTTGAA+GGG - chr6_2:72165884-72165903 None:intergenic 25.0%
!!! ACTCTACTTTTGTCTAAAAA+TGG - chr6_2:72166295-72166314 None:intergenic 25.0%
! AAGAAAAAATTGATCTGGTT+TGG - chr6_2:72166773-72166792 None:intergenic 25.0%
!!! ACCAGATCAATTTTTTCTTT+AGG + chr6_2:72166774-72166793 Msa0927670:intron 25.0%
! TCCTAAAGAAAAAATTGATC+TGG - chr6_2:72166778-72166797 None:intergenic 25.0%
! ATTCTAAATACCAACCTTTA+AGG - chr6_2:72166992-72167011 None:intergenic 25.0%
!!! AAGGTTGGTATTTAGAATTT+TGG + chr6_2:72166994-72167013 Msa0927670:intron 25.0%
!!! TTTTTTCTTCTTCTCTCTTT+TGG - chr6_2:72167050-72167069 None:intergenic 25.0%
! GAAGAAGAAAAAATCTATGA+TGG + chr6_2:72167057-72167076 Msa0927670:intron 25.0%
! ATAAATAAACAACTGCTAGA+TGG - chr6_2:72167266-72167285 None:intergenic 25.0%
! TGTAGTACAATTTACAATAC+AGG + chr6_2:72167403-72167422 Msa0927670:intron 25.0%
! GTAGTACAATTTACAATACA+GGG + chr6_2:72167404-72167423 Msa0927670:intron 25.0%
! CTATTCAAGTATATGATCAA+TGG - chr6_2:72167487-72167506 None:intergenic 25.0%
! AACATTAATAGTAACCAACA+AGG + chr6_2:72167553-72167572 Msa0927670:CDS 25.0%
! TTTAGTTAGTGTGCTTAATT+TGG + chr6_2:72167772-72167791 Msa0927670:intron 25.0%
! ATGACAAGAATATACTATCA+TGG - chr6_2:72167849-72167868 None:intergenic 25.0%
! TATAATGCTTATTATGCACA+AGG - chr6_2:72168093-72168112 None:intergenic 25.0%
! GACAATGCATTATTATATAC+AGG + chr6_2:72168138-72168157 Msa0927670:intron 25.0%
!!! ATAATTACTTTTTTTTGGGC+AGG + chr6_2:72168663-72168682 Msa0927670:intron 25.0%
!!! TAATTACTTTTTTTTGGGCA+GGG + chr6_2:72168664-72168683 Msa0927670:intron 25.0%
! TTATGCTTACTAGTTGAATT+AGG - chr6_2:72168813-72168832 None:intergenic 25.0%
!! AGGTTCATATTTTATCTGTT+TGG + chr6_2:72169284-72169303 Msa0927670:CDS 25.0%
!! TCATATTTTATCTGTTTGGT+TGG + chr6_2:72169288-72169307 Msa0927670:CDS 25.0%
!! CATATTTTATCTGTTTGGTT+GGG + chr6_2:72169289-72169308 Msa0927670:CDS 25.0%
!!! GGATAATTTTGATGTACATT+TGG + chr6_2:72169310-72169329 Msa0927670:CDS 25.0%
! AAGTGATGAAAAATATGTTG+AGG - chr6_2:72169359-72169378 None:intergenic 25.0%
!! TCAACATATTTTTCATCACT+TGG + chr6_2:72169358-72169377 Msa0927670:CDS 25.0%
! TCACATGAAAATCATATGAT+GGG - chr6_2:72169480-72169499 None:intergenic 25.0%
! TTCACATGAAAATCATATGA+TGG - chr6_2:72169481-72169500 None:intergenic 25.0%
!! GAAATTTTCCCTAGAAAAAA+AGG - chr6_2:72169504-72169523 None:intergenic 25.0%
!! TTTTTGTGTCAATAGGTAAA+TGG + chr6_2:72169533-72169552 Msa0927670:intron 25.0%
!!! GATTTTTATCGATTTGTGTT+AGG + chr6_2:72169777-72169796 Msa0927670:intron 25.0%
! CATCACAAGTTAGAAATATT+AGG + chr6_2:72169808-72169827 Msa0927670:intron 25.0%
!!! GTTTTAGTAGAATTGACTTT+AGG + chr6_2:72169830-72169849 Msa0927670:intron 25.0%
! ATTATTATGATGTCACAAGA+TGG - chr6_2:72170533-72170552 None:intergenic 25.0%
! AAATTCATACAAACCAATTG+TGG + chr6_2:72170677-72170696 Msa0927670:intron 25.0%
! TCATTTACTATGTGATAAGA+TGG + chr6_2:72170832-72170851 Msa0927670:intron 25.0%
! CAAAAGACAAAAAGAAAACA+TGG - chr6_2:72170914-72170933 None:intergenic 25.0%
!!! ATATCATTAATTTGCAGCTA+AGG + chr6_2:72171191-72171210 Msa0927670:intron 25.0%
! AACTTAAAAAACCAAGTATG+AGG - chr6_2:72171377-72171396 None:intergenic 25.0%
! TCAAAGAAAAGAAAAACAAG+TGG + chr6_2:72171405-72171424 Msa0927670:intron 25.0%
! CAAAGAAAAGAAAAACAAGT+GGG + chr6_2:72171406-72171425 Msa0927670:intron 25.0%
! TTTATAGTAGCATGTGTATT+TGG + chr6_2:72171595-72171614 Msa0927670:intron 25.0%
! TAACCTATTTAGCATATGTT+AGG + chr6_2:72171855-72171874 Msa0927670:intron 25.0%
! ATACCTAACATATGCTAAAT+AGG - chr6_2:72171861-72171880 None:intergenic 25.0%
!! ATAGATCCTTTAAGTTTCTA+AGG - chr6_2:72172364-72172383 None:intergenic 25.0%
! TAGAACAATAGATCTTATGA+AGG - chr6_2:72172450-72172469 None:intergenic 25.0%
! ACTATCTGATAGATCAAAAT+TGG - chr6_2:72172613-72172632 None:intergenic 25.0%
!!! TAATTTTAGTCAGAACCAAT+TGG + chr6_2:72172635-72172654 Msa0927670:three_prime_UTR 25.0%
! AGGATATATGAACATGTAAA+TGG - chr6_2:72172753-72172772 None:intergenic 25.0%
! TTTACATGTTCATATATCCT+TGG + chr6_2:72172753-72172772 Msa0927670:three_prime_UTR 25.0%
! AATTTATCAGTTCAATGCAT+TGG + chr6_2:72172831-72172850 Msa0927670:three_prime_UTR 25.0%
! ATTTATCAGTTCAATGCATT+GGG + chr6_2:72172832-72172851 Msa0927670:three_prime_UTR 25.0%
AGAAATTAAAAGAGAAGGAG+TGG - chr6_2:72165009-72165028 None:intergenic 30.0%
! TTTCTCTTGTTTCTCTCAAT+TGG + chr6_2:72165119-72165138 Msa0927670:five_prime_UTR 30.0%
GAGAGAAAAAGAGAGATTAA+GGG + chr6_2:72165141-72165160 Msa0927670:five_prime_UTR 30.0%
! ACTTTTGTTGAAGGGTAAAT+AGG - chr6_2:72165876-72165895 None:intergenic 30.0%
!! CCTATGTTTACTTTTGTTGA+AGG - chr6_2:72165885-72165904 None:intergenic 30.0%
CCTTCAACAAAAGTAAACAT+AGG + chr6_2:72165882-72165901 Msa0927670:intron 30.0%
AAAACTCTTTAGCACTACAA+AGG + chr6_2:72166144-72166163 Msa0927670:intron 30.0%
TTTACCTTCTACAAGAAGAT+TGG - chr6_2:72166833-72166852 None:intergenic 30.0%
AAATTCCATAGAACATTCCT+TGG - chr6_2:72166882-72166901 None:intergenic 30.0%
!!! TATGGAATTTTATTTTGGGG+TGG + chr6_2:72166892-72166911 Msa0927670:intron 30.0%
!!! ATGGAATTTTATTTTGGGGT+GGG + chr6_2:72166893-72166912 Msa0927670:intron 30.0%
CATTAAGATTCCCTTCAATT+TGG - chr6_2:72166955-72166974 None:intergenic 30.0%
CTTCTAAATGATTCATGTGT+AGG - chr6_2:72167127-72167146 None:intergenic 30.0%
AATCAGAACTCTAACCTTAA+CGG + chr6_2:72167147-72167166 Msa0927670:intron 30.0%
! ATAAAAACTTGTTCCCGTTA+AGG - chr6_2:72167164-72167183 None:intergenic 30.0%
! GGGTTTCTTTTATCTGAAAA+CGG + chr6_2:72167221-72167240 Msa0927670:intron 30.0%
! TTTCTTTTATCTGAAAACGG+AGG + chr6_2:72167224-72167243 Msa0927670:intron 30.0%
! TTCTTTTATCTGAAAACGGA+GGG + chr6_2:72167225-72167244 Msa0927670:intron 30.0%
CTTCAACTATAAGCTTCAAT+TGG - chr6_2:72167347-72167366 None:intergenic 30.0%
! GAAAAGACTCACCAATTTTA+TGG - chr6_2:72167382-72167401 None:intergenic 30.0%
AGAATAGAAGATCTTCTTAG+TGG + chr6_2:72167432-72167451 Msa0927670:five_prime_UTR 30.0%
TGAATAGTGTGTAACATTAG+TGG + chr6_2:72167500-72167519 Msa0927670:five_prime_UTR 30.0%
ACATTAGTGGAAGAAAAAGA+TGG + chr6_2:72167513-72167532 Msa0927670:exon 30.0%
!! TTAATGTTGTTGCTTTCTCT+TGG - chr6_2:72167541-72167560 None:intergenic 30.0%
AAATGCATCAAATCCTTTGA+TGG + chr6_2:72167615-72167634 Msa0927670:CDS 30.0%
!!! TTTTCTAGCTGCTAATATGT+TGG + chr6_2:72167660-72167679 Msa0927670:CDS 30.0%
CAATTGACTATAGAGGATTT+AGG - chr6_2:72167803-72167822 None:intergenic 30.0%
AAAGTTGGAAAAGACTGTTT+GGG + chr6_2:72167920-72167939 Msa0927670:CDS 30.0%
GCATTATTATATACAGGGAT+CGG + chr6_2:72168144-72168163 Msa0927670:intron 30.0%
CATTATTATATACAGGGATC+GGG + chr6_2:72168145-72168164 Msa0927670:intron 30.0%
ATTATTATATACAGGGATCG+GGG + chr6_2:72168146-72168165 Msa0927670:intron 30.0%
GTAGTCTAGTGACTATAAAT+GGG - chr6_2:72168188-72168207 None:intergenic 30.0%
AGTAGTCTAGTGACTATAAA+TGG - chr6_2:72168189-72168208 None:intergenic 30.0%
AGAGATCAATCAATTCAGAA+GGG - chr6_2:72168398-72168417 None:intergenic 30.0%
TAGAGATCAATCAATTCAGA+AGG - chr6_2:72168399-72168418 None:intergenic 30.0%
TCTGAATTGATTGATCTCTA+TGG + chr6_2:72168399-72168418 Msa0927670:CDS 30.0%
ATCAAGCCAAATGATTCAAT+CGG + chr6_2:72168482-72168501 Msa0927670:intron 30.0%
!!! AATTACTTTTTTTTGGGCAG+GGG + chr6_2:72168665-72168684 Msa0927670:intron 30.0%
CAGAAAAATATGCAGAAAGA+TGG + chr6_2:72168869-72168888 Msa0927670:CDS 30.0%
AAATATGCAGAAAGATGGTA+TGG + chr6_2:72168874-72168893 Msa0927670:intron 30.0%
! ACGATATGATGTGTTTTCAT+TGG - chr6_2:72169105-72169124 None:intergenic 30.0%
TGATGAAAAATATGTTGAGG+AGG - chr6_2:72169356-72169375 None:intergenic 30.0%
! AAATCATATGATGGGAGAAA+AGG - chr6_2:72169472-72169491 None:intergenic 30.0%
!!! TCATGTGAACCTTTTTTTCT+AGG + chr6_2:72169492-72169511 Msa0927670:intron 30.0%
!!! CATGTGAACCTTTTTTTCTA+GGG + chr6_2:72169493-72169512 Msa0927670:intron 30.0%
!!! GTGAACTTTTTTGTGTCAAT+AGG + chr6_2:72169526-72169545 Msa0927670:intron 30.0%
!! ATTTTAAGTCCAGGATTGAT+GGG + chr6_2:72169560-72169579 Msa0927670:CDS 30.0%
TATATGTTGTCTTCCTTTGT+TGG + chr6_2:72169585-72169604 Msa0927670:CDS 30.0%
TTTAGCATGTATTTAGTGTG+CGG + chr6_2:72169682-72169701 Msa0927670:intron 30.0%
AAAGATTCTAAGCATGTGTT+TGG - chr6_2:72170106-72170125 None:intergenic 30.0%
! CTTAGAATCTTTTCTCCAAA+AGG + chr6_2:72170114-72170133 Msa0927670:intron 30.0%
! TGTGTTTTATATTGCATCCA+TGG - chr6_2:72170142-72170161 None:intergenic 30.0%
ATATGTTCTCAAGTAACAAG+AGG - chr6_2:72170447-72170466 None:intergenic 30.0%
TTAAGCAATGTTGTCAAAAC+TGG - chr6_2:72170811-72170830 None:intergenic 30.0%
! GTTATTGCAACATTTTCAAC+AGG + chr6_2:72171075-72171094 Msa0927670:CDS 30.0%
!! ATTAATTTGCAGCTAAGGAA+GGG + chr6_2:72171196-72171215 Msa0927670:intron 30.0%
TGGAAAAAACCATATCCATA+TGG - chr6_2:72171250-72171269 None:intergenic 30.0%
TACTTTGCAATGCTATTGAT+TGG + chr6_2:72171295-72171314 Msa0927670:CDS 30.0%
CATCATTCAATGAGAAAGTA+TGG + chr6_2:72171328-72171347 Msa0927670:intron 30.0%
TTCCATCTTGTTCATGTTAT+GGG + chr6_2:72171351-72171370 Msa0927670:intron 30.0%
ATATGTTTCCAATGAAGCTT+AGG + chr6_2:72171476-72171495 Msa0927670:intron 30.0%
CAGAATAGTAAATGAATGGT+TGG + chr6_2:72171749-72171768 Msa0927670:CDS 30.0%
ATCATATTGCTTCCGAAAAA+AGG - chr6_2:72171805-72171824 None:intergenic 30.0%
TTAGCATATGTTAGGTATCA+CGG + chr6_2:72171863-72171882 Msa0927670:intron 30.0%
TAGCTTATAGAAAATCATGG+TGG - chr6_2:72171913-72171932 None:intergenic 30.0%
GTGTAGCTTATAGAAAATCA+TGG - chr6_2:72171916-72171935 None:intergenic 30.0%
GAAACAAACGTGAAACTTAA+AGG - chr6_2:72172386-72172405 None:intergenic 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG + chr6_2:72172202-72172221 Msa0927670:intron 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG + chr6_2:72172202-72172221 Msa0927670:intron 30.0%
CTGAAACCTTAGAAACTTAA+AGG - chr6_2:72172326-72172345 None:intergenic 30.0%
!! AAGTTTCTAAGGTTTCAGAT+AGG + chr6_2:72172242-72172261 Msa0927670:intron 30.0%
GAAACAAACTCGAAACTTAA+AGG + chr6_2:72172297-72172316 Msa0927670:intron 30.0%
!! AAGTTTCTAAGGTTTCAGAT+AGG - chr6_2:72172242-72172261 None:intergenic 30.0%
CTGAAACCTTAGAAACTTAA+AGG + chr6_2:72172326-72172345 Msa0927670:intron 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG - chr6_2:72172202-72172221 None:intergenic 30.0%
GAAACAAACGTGAAACTTAA+AGG + chr6_2:72172386-72172405 Msa0927670:intron 30.0%
TTGTTCTAATGCACATCTAA+TGG + chr6_2:72172462-72172481 Msa0927670:intron 30.0%
ATTATGCTCGTACTATGTAA+TGG + chr6_2:72172581-72172600 Msa0927670:three_prime_UTR 30.0%
CGTTACTTACAATCATTAGA+TGG + chr6_2:72172777-72172796 Msa0927670:three_prime_UTR 30.0%
AATTAAAAGAGAAGGAGTGG+TGG - chr6_2:72165006-72165025 None:intergenic 35.0%
GGAGAGAAAAAGAGAGATTA+AGG + chr6_2:72165140-72165159 Msa0927670:five_prime_UTR 35.0%
TTGTTTCCTTTGTAGCTTTC+GGG - chr6_2:72166175-72166194 None:intergenic 35.0%
CTTGTTTCCTTTGTAGCTTT+CGG - chr6_2:72166176-72166195 None:intergenic 35.0%
TTACTCTATATAGTTGTGCG+TGG + chr6_2:72166517-72166536 Msa0927670:intron 35.0%
CATACCAATCTTCTTGTAGA+AGG + chr6_2:72166826-72166845 Msa0927670:intron 35.0%
!!! AATTTTATTTTGGGGTGGGA+GGG + chr6_2:72166897-72166916 Msa0927670:intron 35.0%
ACTACTACCATCCAAATTGA+AGG + chr6_2:72166941-72166960 Msa0927670:intron 35.0%
CTACTACCATCCAAATTGAA+GGG + chr6_2:72166942-72166961 Msa0927670:intron 35.0%
AAGATTCCCTTCAATTTGGA+TGG - chr6_2:72166951-72166970 None:intergenic 35.0%
TGAAGGGAATCTTAATGACA+TGG + chr6_2:72166958-72166977 Msa0927670:intron 35.0%
ATCAGAACTCTAACCTTAAC+GGG + chr6_2:72167148-72167167 Msa0927670:intron 35.0%
TGGGAAAGGAAAAAAGCTAA+TGG + chr6_2:72167292-72167311 Msa0927670:intron 35.0%
AATAGTAACCAACAAGGTTG+TGG + chr6_2:72167559-72167578 Msa0927670:CDS 35.0%
TAGACATATCTTGCCATCAA+AGG - chr6_2:72167631-72167650 None:intergenic 35.0%
! TTGATGGCAAGATATGTCTA+TGG + chr6_2:72167631-72167650 Msa0927670:CDS 35.0%
TGACTATAGAGGATTTAGGT+TGG - chr6_2:72167799-72167818 None:intergenic 35.0%
!!! GGTTTTAAAGCATGCAAAGT+TGG + chr6_2:72167905-72167924 Msa0927670:intron 35.0%
CAAAGTTGGAAAAGACTGTT+TGG + chr6_2:72167919-72167938 Msa0927670:CDS 35.0%
!!! TGATGTTTTGGTCAACTACA+AGG + chr6_2:72168274-72168293 Msa0927670:intron 35.0%
TGAATGAACCAAGAGATACA+TGG + chr6_2:72168307-72168326 Msa0927670:intron 35.0%
GTTCAACCGATTGAATCATT+TGG - chr6_2:72168491-72168510 None:intergenic 35.0%
!! GCTTTAAAATTGTCGGTTCA+CGG - chr6_2:72168513-72168532 None:intergenic 35.0%
GCAATTGAACTATGACTTGA+AGG + chr6_2:72168531-72168550 Msa0927670:intron 35.0%
TGCTTACTAGTTGAATTAGG+AGG - chr6_2:72168810-72168829 None:intergenic 35.0%
GCATAATCAGCTTCATTACT+TGG + chr6_2:72168827-72168846 Msa0927670:CDS 35.0%
! GATGTGTTTTCATTGGATGT+CGG - chr6_2:72169098-72169117 None:intergenic 35.0%
CAAATACCATCACATGGATT+TGG - chr6_2:72169260-72169279 None:intergenic 35.0%
GAGATACACTTGTCATGATT+TGG - chr6_2:72169398-72169417 None:intergenic 35.0%
TTGTGTCAATAGGTAAATGG+TGG + chr6_2:72169536-72169555 Msa0927670:intron 35.0%
!! CATTTTAAGTCCAGGATTGA+TGG + chr6_2:72169559-72169578 Msa0927670:CDS 35.0%
!! TTTTAAGTCCAGGATTGATG+GGG + chr6_2:72169561-72169580 Msa0927670:CDS 35.0%
TAGTGTGCGGTGATAAAAAT+TGG + chr6_2:72169695-72169714 Msa0927670:intron 35.0%
!! AGTAGAATTGACTTTAGGGT+TGG + chr6_2:72169835-72169854 Msa0927670:intron 35.0%
!! GATTTTCGAAAGTACAATCG+CGG + chr6_2:72169927-72169946 Msa0927670:intron 35.0%
CAAAAATTTGATTGCGAACG+TGG + chr6_2:72170078-72170097 Msa0927670:intron 35.0%
TATAAGACATGATTGCATGC+AGG - chr6_2:72170170-72170189 None:intergenic 35.0%
ATTATGATGTCACAAGATGG+TGG - chr6_2:72170530-72170549 None:intergenic 35.0%
AACTTAACCAGAGAAGAAAC+CGG + chr6_2:72170580-72170599 Msa0927670:intron 35.0%
CATGGTTCAATTCGTCTAAT+CGG + chr6_2:72170617-72170636 Msa0927670:intron 35.0%
TTCGTCTAATCGGTTAAACT+AGG + chr6_2:72170627-72170646 Msa0927670:intron 35.0%
TCGTCTAATCGGTTAAACTA+GGG + chr6_2:72170628-72170647 Msa0927670:intron 35.0%
AAACCAATTGTGGTTCAACT+TGG + chr6_2:72170687-72170706 Msa0927670:intron 35.0%
ACAAAACTGTGAATCAACTG+TGG + chr6_2:72170724-72170743 Msa0927670:intron 35.0%
!! AATCAACTAGTCTTCTAGGT+TGG - chr6_2:72170755-72170774 None:intergenic 35.0%
!! TAGGAATCAACTAGTCTTCT+AGG - chr6_2:72170759-72170778 None:intergenic 35.0%
TCGATTCAACTGGTTGAATT+AGG - chr6_2:72170778-72170797 None:intergenic 35.0%
AACACTACTGTCTTCAATGT+TGG + chr6_2:72170998-72171017 Msa0927670:intron 35.0%
TGACATGTGACAATAACTGT+TGG + chr6_2:72171022-72171041 Msa0927670:intron 35.0%
CATAGATTCCAAATGCTTTC+AGG + chr6_2:72171098-72171117 Msa0927670:CDS 35.0%
!! GAAACAAACCTGAAAGCATT+TGG - chr6_2:72171109-72171128 None:intergenic 35.0%
!! CATTAATTTGCAGCTAAGGA+AGG + chr6_2:72171195-72171214 Msa0927670:intron 35.0%
GAAGAAGATGATGTTCCATA+TGG + chr6_2:72171232-72171251 Msa0927670:CDS 35.0%
GATGATGTTCCATATGGATA+TGG + chr6_2:72171238-72171257 Msa0927670:CDS 35.0%
!!! TTCCATTTTGTTTTTGCCAC+AGG + chr6_2:72171265-72171284 Msa0927670:CDS 35.0%
! TTGCAATGCTATTGATTGGA+TGG + chr6_2:72171299-72171318 Msa0927670:CDS 35.0%
GTTCCATCTTGTTCATGTTA+TGG + chr6_2:72171350-72171369 Msa0927670:intron 35.0%
GGGTCAGAATAGTAAATGAA+TGG + chr6_2:72171745-72171764 Msa0927670:CDS 35.0%
TTGTAGCTTCTACGAAATCA+CGG + chr6_2:72171937-72171956 Msa0927670:intron 35.0%
ATTTGATGTCCACTACATGT+CGG + chr6_2:72172038-72172057 Msa0927670:intron 35.0%
GTTTCACGTTTGTTTCAGAT+AGG + chr6_2:72172184-72172203 Msa0927670:intron 35.0%
CTGACACCTTAGAAACTTAA+AGG - chr6_2:72172355-72172374 None:intergenic 35.0%
!! AAGTTTCTAAGGTGTCAGAT+AGG + chr6_2:72172213-72172232 Msa0927670:intron 35.0%
!! GTTTCGAGTTTGTTTCAGAT+AGG - chr6_2:72172293-72172312 None:intergenic 35.0%
!! AAGTTTCTAAGGTGTCAGAT+AGG - chr6_2:72172213-72172232 None:intergenic 35.0%
CTGACACCTTAGAAACTTAA+AGG + chr6_2:72172355-72172374 Msa0927670:intron 35.0%
TACATAGTACGAGCATAATG+AGG - chr6_2:72172580-72172599 None:intergenic 35.0%
CATTTGTGCTAGAATCCAAT+TGG - chr6_2:72172653-72172672 None:intergenic 35.0%
! TATTTCTGTGTACCATCCTT+TGG - chr6_2:72172726-72172745 None:intergenic 35.0%
ATGATTGTAAGTAACGTCCA+AGG - chr6_2:72172773-72172792 None:intergenic 35.0%
TCGAGTTTAGTGAAAATCCC+TGG + chr6_2:72166077-72166096 Msa0927670:intron 40.0%
GAAAATCCCGAAAGCTACAA+AGG + chr6_2:72166166-72166185 Msa0927670:intron 40.0%
GTAGAAGGTAAATCAACCAC+AGG + chr6_2:72166841-72166860 Msa0927670:intron 40.0%
GTACGATAAAGTCTTACCTG+TGG - chr6_2:72166860-72166879 None:intergenic 40.0%
GGTAAGACTTTATCGTACCA+AGG + chr6_2:72166862-72166881 Msa0927670:intron 40.0%
TCGTACCAAGGAATGTTCTA+TGG + chr6_2:72166874-72166893 Msa0927670:intron 40.0%
!!! GAATTTTATTTTGGGGTGGG+AGG + chr6_2:72166896-72166915 Msa0927670:intron 40.0%
GGGAATCTTAATGACATGGT+AGG + chr6_2:72166962-72166981 Msa0927670:intron 40.0%
ACATGGTAGGCATACCTTAA+AGG + chr6_2:72166975-72166994 Msa0927670:intron 40.0%
AGAAGATCTTCTTAGTGGAG+TGG + chr6_2:72167437-72167456 Msa0927670:five_prime_UTR 40.0%
! GTGGACTAAAGGATTCTTCA+TGG + chr6_2:72167578-72167597 Msa0927670:CDS 40.0%
TAGCTGCTAATATGTTGGCA+TGG + chr6_2:72167665-72167684 Msa0927670:CDS 40.0%
AGCTGCTAATATGTTGGCAT+GGG + chr6_2:72167666-72167685 Msa0927670:CDS 40.0%
!! TAGTGCATTGACTGAACTCA+AGG + chr6_2:72167714-72167733 Msa0927670:CDS 40.0%
!! AGTGCATTGACTGAACTCAA+GGG + chr6_2:72167715-72167734 Msa0927670:CDS 40.0%
!!! TGGTGTTTTGAGAGTTAGCA+TGG + chr6_2:72167949-72167968 Msa0927670:CDS 40.0%
!!! GGTGTTTTGAGAGTTAGCAT+GGG + chr6_2:72167950-72167969 Msa0927670:CDS 40.0%
GGGCAACAAAGATTGTTCTA+TGG + chr6_2:72168343-72168362 Msa0927670:intron 40.0%
! CTATGACTTGAAGGTCTTGT+TGG + chr6_2:72168540-72168559 Msa0927670:intron 40.0%
!!! AAGTTGCACATTTTGGAGCA+GGG + chr6_2:72168688-72168707 Msa0927670:CDS 40.0%
CTGTTGCAAATACCATCACA+TGG - chr6_2:72169266-72169285 None:intergenic 40.0%
CATGTGATGGTATTTGCAAC+AGG + chr6_2:72169264-72169283 Msa0927670:CDS 40.0%
! AATATGTTGAGGAGGCATGA+TGG - chr6_2:72169348-72169367 None:intergenic 40.0%
!! AATGGTGGCATTTTAAGTCC+AGG + chr6_2:72169551-72169570 Msa0927670:CDS 40.0%
TTCTGATTGCACACCAACAA+AGG - chr6_2:72169601-72169620 None:intergenic 40.0%
TTTGTTGGTGTGCAATCAGA+AGG + chr6_2:72169600-72169619 Msa0927670:intron 40.0%
! CTTTTCTCCAAAAGGAACCA+TGG + chr6_2:72170122-72170141 Msa0927670:intron 40.0%
! ATTGCATCCATGGTTCCTTT+TGG - chr6_2:72170132-72170151 None:intergenic 40.0%
GATCAATGCATCAGAACATC+AGG + chr6_2:72170296-72170315 Msa0927670:CDS 40.0%
! GATGTTTTGCCAGTCTGTTT+TGG - chr6_2:72170330-72170349 None:intergenic 40.0%
CGATTAGACGAATTGAACCA+TGG - chr6_2:72170619-72170638 None:intergenic 40.0%
! GAACCAAGTTGAACCACAAT+TGG - chr6_2:72170693-72170712 None:intergenic 40.0%
ATTCAACCAGTTGAATCGAC+CGG + chr6_2:72170779-72170798 Msa0927670:intron 40.0%
!! TGTTGGCAGAGCTTTGTTAT+TGG + chr6_2:72171039-72171058 Msa0927670:intron 40.0%
CTCCTGTGGCAAAAACAAAA+TGG - chr6_2:72171270-72171289 None:intergenic 40.0%
AGAATGCACCTAAGCTTCAT+TGG - chr6_2:72171487-72171506 None:intergenic 40.0%
TGAAGCTTAGGTGCATTCTT+TGG + chr6_2:72171488-72171507 Msa0927670:intron 40.0%
TGGAAACATTGTTCTGCAGA+TGG + chr6_2:72171694-72171713 Msa0927670:intron 40.0%
CATATGTTAGGTATCACGGT+GGG + chr6_2:72171867-72171886 Msa0927670:intron 40.0%
GATACCAAAGACACACTTAG+TGG + chr6_2:72171993-72172012 Msa0927670:intron 40.0%
!! TTTTTGGCCAAATACCTCCA+TGG + chr6_2:72172152-72172171 Msa0927670:intron 40.0%
! TTTTGGCCAAATACCTCCAT+GGG + chr6_2:72172153-72172172 Msa0927670:intron 40.0%
GGTTTCAGATAGGTCCTTAA+CGG + chr6_2:72172252-72172271 Msa0927670:intron 40.0%
TGCTGATAGCTCCAATTGTA+TGG + chr6_2:72172513-72172532 Msa0927670:CDS 40.0%
GATAGCTCCAATTGTATGGA+AGG + chr6_2:72172517-72172536 Msa0927670:CDS 40.0%
TGTCTTGCCTTCCATACAAT+TGG - chr6_2:72172527-72172546 None:intergenic 40.0%
TGGGTTCTTGTAGAAGTCTA+TGG + chr6_2:72172851-72172870 Msa0927670:three_prime_UTR 40.0%
GGTAGGCATACCTTAAAGGT+TGG + chr6_2:72166979-72166998 Msa0927670:intron 45.0%
CCTTTAGTCCACAACCTTGT+TGG - chr6_2:72167570-72167589 None:intergenic 45.0%
! CCAACAAGGTTGTGGACTAA+AGG + chr6_2:72167567-72167586 Msa0927670:CDS 45.0%
! AAAGACTGTTTGGGAGCACA+TGG + chr6_2:72167929-72167948 Msa0927670:CDS 45.0%
TTGTCCCTGTGTTATGCTCA+CGG - chr6_2:72168123-72168142 None:intergenic 45.0%
CCAGAATGCCATGTATCTCT+TGG - chr6_2:72168318-72168337 None:intergenic 45.0%
CCAAGAGATACATGGCATTC+TGG + chr6_2:72168315-72168334 Msa0927670:intron 45.0%
GAGATACATGGCATTCTGGA+TGG + chr6_2:72168319-72168338 Msa0927670:intron 45.0%
ATACATGGCATTCTGGATGG+TGG + chr6_2:72168322-72168341 Msa0927670:intron 45.0%
TACATGGCATTCTGGATGGT+GGG + chr6_2:72168323-72168342 Msa0927670:intron 45.0%
!!! GGTCTTGTTGGTTCGTTTTC+TGG + chr6_2:72168552-72168571 Msa0927670:intron 45.0%
!!! GAAGTTGCACATTTTGGAGC+AGG + chr6_2:72168687-72168706 Msa0927670:CDS 45.0%
! TTGAGGAGGCATGATGGTAT+TGG - chr6_2:72169342-72169361 None:intergenic 45.0%
ACATATAGCCCCATCAATCC+TGG - chr6_2:72169572-72169591 None:intergenic 45.0%
! CTGATGCATTGATCTCCTTC+TGG - chr6_2:72170290-72170309 None:intergenic 45.0%
GCACTGTAACCAAAACAGAC+TGG + chr6_2:72170318-72170337 Msa0927670:CDS 45.0%
TTGTCAAAACTGGACCGAAC+CGG - chr6_2:72170801-72170820 None:intergenic 45.0%
GGAACATCATCTTCTTCTGC+TGG - chr6_2:72171229-72171248 None:intergenic 45.0%
TGCAAAGTACATAGCTCCTG+TGG - chr6_2:72171284-72171303 None:intergenic 45.0%
GGCCCATAACATGAACAAGA+TGG - chr6_2:72171356-72171375 None:intergenic 45.0%
CATGTTATGGGCCTCATACT+TGG + chr6_2:72171363-72171382 Msa0927670:intron 45.0%
TGCAGATGGTCACTTGATGT+GGG + chr6_2:72171708-72171727 Msa0927670:intron 45.0%
TACTATTCTGACCCAAGCAC+TGG - chr6_2:72171739-72171758 None:intergenic 45.0%
GCATATGTTAGGTATCACGG+TGG + chr6_2:72171866-72171885 Msa0927670:intron 45.0%
GTGTGTCTTTGGTATCACAG+TGG - chr6_2:72171989-72172008 None:intergenic 45.0%
GTTGCCACTAAGTGTGTCTT+TGG - chr6_2:72172000-72172019 None:intergenic 45.0%
!! AAAGGACCCATGGAGGTATT+TGG - chr6_2:72172162-72172181 None:intergenic 45.0%
GAAACTTAAAGGACCCATGG+AGG - chr6_2:72172169-72172188 None:intergenic 45.0%
CGTGAAACTTAAAGGACCCA+TGG - chr6_2:72172394-72172413 None:intergenic 45.0%
TTCAGATAGGTCCTTAACGG+AGG + chr6_2:72172255-72172274 Msa0927670:intron 45.0%
CCTTCTATCAACCTCCGTTA+AGG - chr6_2:72172269-72172288 None:intergenic 45.0%
!! CCTTAACGGAGGTTGATAGA+AGG + chr6_2:72172266-72172285 Msa0927670:intron 45.0%
ACGTGAAACTTAAAGGACCC+AGG + chr6_2:72172393-72172412 Msa0927670:intron 45.0%
CGTGAAACTTAAAGGACCCA+GGG + chr6_2:72172394-72172413 Msa0927670:intron 45.0%
AAATGGCCAAATACCTCCCT+GGG - chr6_2:72172413-72172432 None:intergenic 45.0%
AAAATGGCCAAATACCTCCC+TGG - chr6_2:72172414-72172433 None:intergenic 45.0%
ACTCCTCTCATTCCATCCAA+AGG + chr6_2:72172707-72172726 Msa0927670:three_prime_UTR 45.0%
CATCCTTTGGATGGAATGAG+AGG - chr6_2:72172713-72172732 None:intergenic 45.0%
CTCTCATTCCATCCAAAGGA+TGG + chr6_2:72172711-72172730 Msa0927670:three_prime_UTR 45.0%
TCTGTGTACCATCCTTTGGA+TGG - chr6_2:72172722-72172741 None:intergenic 45.0%
!!! TCTATTATATATTTAAAATA+GGG + chr6_2:72168595-72168614 Msa0927670:intron 5.0%
!!! TTTATTTTGGGGTGGGAGGG+TGG + chr6_2:72166900-72166919 Msa0927670:intron 50.0%
!!! TTATTTTGGGGTGGGAGGGT+GGG + chr6_2:72166901-72166920 Msa0927670:intron 50.0%
ACATCCCGTGAGCATAACAC+AGG + chr6_2:72168115-72168134 Msa0927670:intron 50.0%
CATCCCGTGAGCATAACACA+GGG + chr6_2:72168116-72168135 Msa0927670:intron 50.0%
TGTCCCTGTGTTATGCTCAC+GGG - chr6_2:72168122-72168141 None:intergenic 50.0%
! GCAGGGGAAGTTGCACATTT+TGG + chr6_2:72168681-72168700 Msa0927670:intron 50.0%
GTGCAGCCAAATCCATGTGA+TGG + chr6_2:72169251-72169270 Msa0927670:intron 50.0%
TGTGCATGCAGTGAACCAGA+AGG + chr6_2:72170272-72170291 Msa0927670:intron 50.0%
!! AGTCTCACCGGTTTCTTCTC+TGG - chr6_2:72170590-72170609 None:intergenic 50.0%
ACCAGTTGAATCGACCGGTT+CGG + chr6_2:72170784-72170803 Msa0927670:intron 50.0%
CTGCAGATGGTCACTTGATG+TGG + chr6_2:72171707-72171726 Msa0927670:intron 50.0%
GAAACTTAAAGGACCCAGGG+AGG + chr6_2:72172397-72172416 Msa0927670:intron 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG + chr6_2:72172404-72172423 Msa0927670:intron 50.0%
!!! TATTTTGGGGTGGGAGGGTG+GGG + chr6_2:72166902-72166921 Msa0927670:intron 55.0%
AGGGATCGGGGTTCGAACTT+CGG + chr6_2:72168158-72168177 Msa0927670:intron 55.0%
CCATGGCTCAGAAGTCTCAC+CGG - chr6_2:72170602-72170621 None:intergenic 55.0%
! ACCGAACCGGTCGATTCAAC+TGG - chr6_2:72170788-72170807 None:intergenic 55.0%
GATGGTCACTTGATGTGGGC+TGG + chr6_2:72171712-72171731 Msa0927670:intron 55.0%
CGTCTCACACCGACATGTAG+TGG - chr6_2:72172050-72172069 None:intergenic 55.0%
!!! ATTTTGGGGTGGGAGGGTGG+GGG + chr6_2:72166903-72166922 Msa0927670:intron 60.0%
CCGGTGAGACTTCTGAGCCA+TGG + chr6_2:72170599-72170618 Msa0927670:intron 60.0%
!! ATGTGGGCTGGACCAGTGCT+TGG + chr6_2:72171724-72171743 Msa0927670:CDS 60.0%
!! TGTGGGCTGGACCAGTGCTT+GGG + chr6_2:72171725-72171744 Msa0927670:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 72164906 72172921 72164906 ID=Msa0927670;Name=Msa0927670
chr6_2 mRNA 72164906 72172921 72164906 ID=Msa0927670-mRNA-1;Parent=Msa0927670;Name=Msa0927670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=420|0.83|0.84|1|0.41|0.53|13|359|366
chr6_2 exon 72164906 72165218 72164906 ID=Msa0927670-mRNA-1:exon:12172;Parent=Msa0927670-mRNA-1
chr6_2 exon 72167425 72167736 72167425 ID=Msa0927670-mRNA-1:exon:12173;Parent=Msa0927670-mRNA-1
chr6_2 exon 72167906 72167979 72167906 ID=Msa0927670-mRNA-1:exon:12174;Parent=Msa0927670-mRNA-1
chr6_2 exon 72168354 72168420 72168354 ID=Msa0927670-mRNA-1:exon:12175;Parent=Msa0927670-mRNA-1
chr6_2 exon 72168685 72168709 72168685 ID=Msa0927670-mRNA-1:exon:12176;Parent=Msa0927670-mRNA-1
chr6_2 exon 72168801 72168890 72168801 ID=Msa0927670-mRNA-1:exon:12177;Parent=Msa0927670-mRNA-1
chr6_2 exon 72169257 72169428 72169257 ID=Msa0927670-mRNA-1:exon:12178;Parent=Msa0927670-mRNA-1
chr6_2 exon 72169548 72169606 72169548 ID=Msa0927670-mRNA-1:exon:12179;Parent=Msa0927670-mRNA-1
chr6_2 exon 72170283 72170352 72170283 ID=Msa0927670-mRNA-1:exon:12180;Parent=Msa0927670-mRNA-1
chr6_2 exon 72171048 72171119 72171048 ID=Msa0927670-mRNA-1:exon:12181;Parent=Msa0927670-mRNA-1
chr6_2 exon 72171208 72171344 72171208 ID=Msa0927670-mRNA-1:exon:12182;Parent=Msa0927670-mRNA-1
chr6_2 exon 72171713 72171786 72171713 ID=Msa0927670-mRNA-1:exon:12183;Parent=Msa0927670-mRNA-1
chr6_2 exon 72172507 72172921 72172507 ID=Msa0927670-mRNA-1:exon:12184;Parent=Msa0927670-mRNA-1
chr6_2 five_prime_UTR 72164906 72165218 72164906 ID=Msa0927670-mRNA-1:five_prime_utr;Parent=Msa0927670-mRNA-1
chr6_2 five_prime_UTR 72167425 72167531 72167425 ID=Msa0927670-mRNA-1:five_prime_utr;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72167532 72167736 72167532 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72167906 72167979 72167906 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72168354 72168420 72168354 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72168685 72168709 72168685 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72168801 72168890 72168801 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72169257 72169428 72169257 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72169548 72169606 72169548 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72170283 72170352 72170283 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72171048 72171119 72171048 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72171208 72171344 72171208 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72171713 72171786 72171713 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 CDS 72172507 72172562 72172507 ID=Msa0927670-mRNA-1:cds;Parent=Msa0927670-mRNA-1
chr6_2 three_prime_UTR 72172563 72172921 72172563 ID=Msa0927670-mRNA-1:three_prime_utr;Parent=Msa0927670-mRNA-1
Gene Sequence

>Msa0927670

ATGGAACCAAGAGAAAGCAACAACATTAATAGTAACCAACAAGGTTGTGGACTAAAGGATTCTTCATGGTGTTGTCAATTCAAAAATGCATCAAATCCTTTGATGGCAAGATATGTCTATGGCTTGATTTTTCTAGCTGCTAATATGTTGGCATGGGCTACACGTGATGAACTTTCTAGTATTAGTGCATTGACTGAACTCAAGGGTTTTAAAGCATGCAAAGTTGGAAAAGACTGTTTGGGAGCACATGGTGTTTTGAGAGTTAGCATGGGTTGCTTTATTGTTCTATGGATTATATTGACAATCTTTACATTTTTACTCCCTTCTGAATTGATTGATCTCTATGGGGAAGTTGCACATTTTGGAGCAGGGGTTTTCCTCCTAATTCAACTAGTAAGCATAATCAGCTTCATTACTTGGCTAAATGATTGTTTTGCATCAGAAAAATATGCAGAAAGATGCCAAATCCATGTGATGGTATTTGCAACAGGTTCATATTTTATCTGTTTGGTTGGGATAATTTTGATGTACATTTGGTATGCACCAATACCATCATGCCTCCTCAACATATTTTTCATCACTTGGACTTTAGTACTTCTCCAAATCATGACAAGTGTATCTCTTCACCCAAAAGTAAATGGTGGCATTTTAAGTCCAGGATTGATGGGGCTATATGTTGTCTTCCTTTGTTGTGAACCAGAAGGAGATCAATGCATCAGAACATCAGGCACTGTAACCAAAACAGACTGGCAAAACATCATTAGCTTTGTTATTGGAATACTAGCAATAGTTATTGCAACATTTTCAACAGGCATAGATTCCAAATGCTTTCAGCTAAGGAAGGGTGATAAACCAGCAGAAGAAGATGATGTTCCATATGGATATGGTTTTTTCCATTTTGTTTTTGCCACAGGAGCTATGTACTTTGCAATGCTATTGATTGGATGGAATACTCATCATTCAATGAGAAAATGGTCACTTGATGTGGGCTGGACCAGTGCTTGGGTCAGAATAGTAAATGAATGGTTGGCAGTCTGTGTATACTTATGGATGCTGATAGCTCCAATTGTATGGAAGGCAAGACAGACTGAATCTACATGA

Protein sequence

>Msa0927670

MEPRESNNINSNQQGCGLKDSSWCCQFKNASNPLMARYVYGLIFLAANMLAWATRDELSSISALTELKGFKACKVGKDCLGAHGVLRVSMGCFIVLWIILTIFTFLLPSELIDLYGEVAHFGAGVFLLIQLVSIISFITWLNDCFASEKYAERCQIHVMVFATGSYFICLVGIILMYIWYAPIPSCLLNIFFITWTLVLLQIMTSVSLHPKVNGGILSPGLMGLYVVFLCCEPEGDQCIRTSGTVTKTDWQNIISFVIGILAIVIATFSTGIDSKCFQLRKGDKPAEEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHSMRKWSLDVGWTSAWVRIVNEWLAVCVYLWMLIAPIVWKARQTEST*