AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0999040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999040 MtrunA17_Chr6g0485111 95.804 143 3 1 153 292 260 402 1.75e-94 285
Msa0999040 MtrunA17_Chr6g0485111 98.925 93 1 0 1 93 1 93 1.56e-59 194
Msa0999040 MtrunA17_Chr8g0390691 78.322 143 27 2 153 292 256 397 2.18e-75 235
Msa0999040 MtrunA17_Chr8g0390691 61.290 93 32 2 1 93 1 89 2.18e-20 90.1
Msa0999040 MtrunA17_Chr1g0169271 54.478 134 57 2 153 283 274 406 1.02e-44 157
Msa0999040 MtrunA17_Chr2g0287641 30.464 151 85 2 157 288 258 407 7.21e-16 77.4
Msa0999040 MtrunA17_Chr7g0237091 44.186 86 46 1 205 288 324 409 1.16e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999040 AT3G24460.2 67.123 146 42 2 153 292 262 407 1.07e-65 211
Msa0999040 AT3G24460.2 56.667 90 35 2 6 93 8 95 9.01e-22 94.7
Msa0999040 AT3G24460.1 67.123 146 42 2 153 292 262 407 1.07e-65 211
Msa0999040 AT3G24460.1 56.667 90 35 2 6 93 8 95 9.01e-22 94.7
Msa0999040 AT4G13345.1 70.000 140 38 2 153 289 255 393 7.61e-65 209
Msa0999040 AT4G13345.1 58.427 89 35 1 5 93 2 88 1.34e-18 85.5
Msa0999040 AT4G13345.2 68.571 140 40 2 153 289 255 393 6.04e-64 206
Msa0999040 AT4G13345.2 58.427 89 35 1 5 93 2 88 1.45e-18 85.5
Msa0999040 AT4G13345.6 68.571 140 40 2 153 289 255 393 6.04e-64 206
Msa0999040 AT4G13345.6 58.427 89 35 1 5 93 2 88 1.45e-18 85.5
Msa0999040 AT4G13345.4 70.400 125 33 2 153 274 255 378 4.26e-56 186
Msa0999040 AT4G13345.4 58.427 89 35 1 5 93 2 88 1.32e-18 85.5
Msa0999040 AT2G33205.1 61.194 134 50 2 157 290 280 411 3.46e-49 169
Msa0999040 AT2G33205.7 59.259 135 53 2 157 290 170 303 8.33e-49 165
Msa0999040 AT2G33205.2 59.259 135 53 2 157 290 185 318 8.66e-49 165
Msa0999040 AT2G33205.8 59.259 135 53 2 157 290 280 413 8.80e-48 165
Msa0999040 AT2G33205.5 59.259 135 53 2 157 290 280 413 8.80e-48 165
Msa0999040 AT2G33205.9 58.824 119 47 2 157 274 280 397 1.23e-41 148
Msa0999040 AT4G13345.5 65.347 101 31 2 153 250 255 354 6.55e-39 140
Msa0999040 AT4G13345.5 64.935 77 25 1 17 93 14 88 1.23e-18 85.1
Msa0999040 AT2G33205.6 55.789 95 40 2 157 250 280 373 9.96e-27 107
Msa0999040 AT4G13345.3 64.935 77 25 1 17 93 14 88 7.58e-19 85.1
Msa0999040 AT4G13345.7 64.935 77 25 1 17 93 14 88 7.58e-19 85.1
Msa0999040 AT3G06170.1 46.341 82 43 1 207 288 327 407 1.45e-15 76.6
Msa0999040 AT1G16180.2 29.870 154 84 3 156 288 261 411 2.05e-14 73.6
Msa0999040 AT1G16180.1 29.870 154 84 3 156 288 261 411 2.05e-14 73.6

Find 78 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAGATTCTAAATGCTTTC+AGG 0.153702 6_4:+80707674 Msa0999040:CDS
TTACATAGTACGAGCATAAT+TGG 0.217007 6_4:-80708874 None:intergenic
ACTATCTGATAGATCAAAAT+TGG 0.241729 6_4:-80708906 None:intergenic
TGTTGGCAGAGCTTTGTTAT+TGG 0.269454 6_4:+80707615 Msa0999040:intron
CTGATGCATTGATCTCCTTC+TGG 0.269494 6_4:-80706871 None:intergenic
AGCAATTTAGTCTATGATAT+TGG 0.274697 6_4:+80701209 Msa0999040:five_prime_UTR
TTTCTCTTGTTTCTCTCAAT+TGG 0.293298 6_4:+80701148 Msa0999040:five_prime_UTR
GAGATACACTTGTCATGATT+TGG 0.294464 6_4:-80705978 None:intergenic
AGGATATATGAACATGTAAA+TGG 0.325827 6_4:-80709046 None:intergenic
CAAAATTGGAAAAGACTGTT+TGG 0.329071 6_4:+80703949 Msa0999040:CDS
CCTTGAAAGGGATAACAATA+TGG 0.333198 6_4:+80700923 None:intergenic
CAAATACCATCACATGGATT+TGG 0.338082 6_4:-80705840 None:intergenic
GATGATGTTCCATATGGATA+TGG 0.339974 6_4:+80707814 Msa0999040:CDS
CCTTTAGTCCACAACCTTGT+TGG 0.356113 6_4:-80703597 None:intergenic
TATTTCTGTGTACCATCCTT+TGG 0.358026 6_4:-80709019 None:intergenic
TTGATGGCAAGATATGTCTA+TGG 0.370296 6_4:+80703661 Msa0999040:CDS
TACTTTGCAATGCTATTGAT+TGG 0.370812 6_4:+80707871 Msa0999040:CDS
ATGAAGCATATAAGCTTATA+CGG 0.380266 6_4:+80700966 Msa0999040:five_prime_UTR
AAATGCATCAAATCCTTTGA+TGG 0.383037 6_4:+80703645 Msa0999040:CDS
TTAATGTTGTTGCTTTCTCT+TGG 0.384289 6_4:-80703568 None:intergenic
TGGGTTCTTGTAGAAGTCTA+TGG 0.393716 6_4:+80709189 Msa0999040:three_prime_UTR
ATGTGGGCTGGACCAGTGCT+TGG 0.396466 6_4:+80708300 Msa0999040:CDS
ATTTATCAGTTCAATGCATT+GGG 0.400158 6_4:+80709170 Msa0999040:three_prime_UTR
TGTCTTGCCTTCCATACAAT+TGG 0.400690 6_4:-80708820 None:intergenic
AATTTATCAGTTCAATGCAT+TGG 0.413494 6_4:+80709169 Msa0999040:three_prime_UTR
GTGGACTAAAGGATTCTTCA+TGG 0.420163 6_4:+80703608 Msa0999040:CDS
CATGTGATGGTATTTGCAAC+AGG 0.432557 6_4:+80705847 Msa0999040:CDS
AAAATTGGAAAAGACTGTTT+GGG 0.433583 6_4:+80703950 Msa0999040:CDS
GGAACATCATCTTCTTCTGC+TGG 0.439187 6_4:-80707802 None:intergenic
TGAATAGTGTGTAACATTAG+TGG 0.445733 6_4:+80703530 Msa0999040:five_prime_UTR
TTTACATGTTCATATATCCT+TGG 0.449738 6_4:+80709049 Msa0999040:three_prime_UTR
CTGCAGATGGTCACTTGATG+TGG 0.452717 6_4:+80708283 Msa0999040:intron
TAGCTGCTAATATGTTGGCA+TGG 0.464913 6_4:+80703695 Msa0999040:CDS
GAAGAAGATGATGTTCCATA+TGG 0.466677 6_4:+80707808 Msa0999040:CDS
TGCTGATAGCTCCAATTGTA+TGG 0.471218 6_4:+80708809 Msa0999040:CDS
GTAATTTCAACAATAAGAAT+AGG 0.472061 6_4:-80709227 None:intergenic
CCAACAAGGTTGTGGACTAA+AGG 0.475753 6_4:+80703597 Msa0999040:CDS
GATCAATGCATCAGAACATC+AGG 0.477126 6_4:+80706880 Msa0999040:CDS
TTGCAATGCTATTGATTGGA+TGG 0.487844 6_4:+80707875 Msa0999040:CDS
AGAATAGAAGATCTTCTTAG+TGG 0.490986 6_4:+80703462 Msa0999040:five_prime_UTR
CTATTCAAGTATATGATCAA+TGG 0.495256 6_4:-80703514 None:intergenic
ATTATGCTCGTACTATGTAA+TGG 0.495790 6_4:+80708877 Msa0999040:three_prime_UTR
TACATAGTACGAGCATAATT+GGG 0.496208 6_4:-80708873 None:intergenic
GATGGTCACTTGATGTGGGC+TGG 0.502453 6_4:+80708288 Msa0999040:intron
TGTGGGCTGGACCAGTGCTT+GGG 0.503046 6_4:+80708301 Msa0999040:CDS
TACTATTCTGACCCAAGCAC+TGG 0.503124 6_4:-80708312 None:intergenic
CATTAATTTGCAGCTAAGGA+AGG 0.506153 6_4:+80707771 Msa0999040:intron
CATTTGTGCTAGAATCCAAT+TGG 0.512599 6_4:-80708946 None:intergenic
TCTGTGTACCATCCTTTGGA+TGG 0.517292 6_4:-80709015 None:intergenic
TGCAGATGGTCACTTGATGT+GGG 0.517995 6_4:+80708284 Msa0999040:intron
CAGAATAGTAAATGAATGGT+TGG 0.523254 6_4:+80708325 Msa0999040:CDS
AGTGAAGAAATTAAAAGAGA+AGG 0.524149 6_4:-80701040 None:intergenic
TTGAGGAGGCATGATGGTAT+TGG 0.529147 6_4:-80705922 None:intergenic
TAGTGCATTGACTGAACTCA+AGG 0.537938 6_4:+80703744 Msa0999040:CDS
AATAGTAACCAACAAGGTTG+TGG 0.539024 6_4:+80703589 Msa0999040:CDS
AGCTGCTAATATGTTGGCAT+GGG 0.541683 6_4:+80703696 Msa0999040:CDS
ATTAATTTGCAGCTAAGGAA+GGG 0.543167 6_4:+80707772 Msa0999040:intron
GGGTCAGAATAGTAAATGAA+TGG 0.552152 6_4:+80708321 Msa0999040:CDS
AGAAATTAAAAGAGAAGGAG+TGG 0.558708 6_4:-80701035 None:intergenic
TAGACATATCTTGCCATCAA+AGG 0.559648 6_4:-80703658 None:intergenic
GATAGCTCCAATTGTATGGA+AGG 0.571406 6_4:+80708813 Msa0999040:CDS
CTCTCATTCCATCCAAAGGA+TGG 0.589491 6_4:+80709007 Msa0999040:three_prime_UTR
CATCCTTTGGATGGAATGAG+AGG 0.592659 6_4:-80709006 None:intergenic
AATATGTTGAGGAGGCATGA+TGG 0.594347 6_4:-80705928 None:intergenic
CTGTTGCAAATACCATCACA+TGG 0.597757 6_4:-80705846 None:intergenic
AGAAGATCTTCTTAGTGGAG+TGG 0.604451 6_4:+80703467 Msa0999040:five_prime_UTR
AATTAAAAGAGAAGGAGTGG+TGG 0.612518 6_4:-80701032 None:intergenic
ACTCCTCTCATTCCATCCAA+AGG 0.616042 6_4:+80709003 Msa0999040:three_prime_UTR
ATGATTGTAAGTAACGTCCA+AGG 0.630967 6_4:-80709066 None:intergenic
GTGCAGCCAAATCCATGTGA+TGG 0.636534 6_4:+80705834 Msa0999040:intron
TGCAAAGTACATAGCTCCTG+TGG 0.637719 6_4:-80707857 None:intergenic
GCACTGTAACCAAAACAGAC+TGG 0.637874 6_4:+80706902 Msa0999040:CDS
AGTGCATTGACTGAACTCAA+GGG 0.641155 6_4:+80703745 Msa0999040:CDS
TGTGCATGCAGTGAACCAGA+AGG 0.646240 6_4:+80706856 Msa0999040:CDS
AAAGGGATAACAATATGGAG+AGG 0.664934 6_4:+80700928 None:intergenic
AAAGACTGTTTGGGAGCACA+TGG 0.665233 6_4:+80703959 Msa0999040:CDS
TATTGGATTAACATATACAA+AGG 0.674358 6_4:+80701226 Msa0999040:five_prime_UTR
AACATTAATAGTAACCAACA+AGG 0.715322 6_4:+80703583 Msa0999040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAACAAAACAAAATT+TGG + chr6_4:80701725-80701744 Msa0999040:intron 10.0%
!!! TTTTTCAATAAAAAATGAAA+AGG - chr6_4:80702156-80702175 None:intergenic 10.0%
!!! CTTCTTTTTAAATTAAATTA+TGG + chr6_4:80702449-80702468 Msa0999040:intron 10.0%
!!! TCTCTTTAAAAAATATTTAA+TGG - chr6_4:80702504-80702523 None:intergenic 10.0%
!! ATTGTAAAAAAAAGATATTT+AGG - chr6_4:80702615-80702634 None:intergenic 10.0%
!!! TTATTTATTTATTTTGTGAA+AGG + chr6_4:80703308-80703327 Msa0999040:intron 10.0%
!!! ATTGAAATTTTATTTGATAA+AGG - chr6_4:80704017-80704036 None:intergenic 10.0%
!! ATCAAATAAAATTTCAATTA+TGG + chr6_4:80704019-80704038 Msa0999040:intron 10.0%
!! TCAAATAAAATTTCAATTAT+GGG + chr6_4:80704020-80704039 Msa0999040:intron 10.0%
!!! CTCTATTATTTATTTAAAAT+AGG + chr6_4:80704623-80704642 Msa0999040:intron 10.0%
!!! TGACATAATTATTATTTTTT+TGG + chr6_4:80704688-80704707 Msa0999040:intron 10.0%
!! AAATTTAAAAATGCAAAAAA+AGG - chr6_4:80706216-80706235 None:intergenic 10.0%
!! ATATTCAATAGAAATAAAAA+GGG - chr6_4:80706819-80706838 None:intergenic 10.0%
!! TATATTCAATAGAAATAAAA+AGG - chr6_4:80706820-80706839 None:intergenic 10.0%
!!! GTATGAATTTTTTAATTTAT+TGG - chr6_4:80707251-80707270 None:intergenic 10.0%
!! ATAAAATATGTGTTTATGAA+AGG - chr6_4:80701296-80701315 None:intergenic 15.0%
!!! TTTTTATGTCATTATATCTT+TGG + chr6_4:80701577-80701596 Msa0999040:intron 15.0%
!!! TTTTATCAATCTTTTATTGA+TGG + chr6_4:80702057-80702076 Msa0999040:intron 15.0%
!!! CTTTTTTAATTTTCATTTGT+TGG - chr6_4:80702256-80702275 None:intergenic 15.0%
!!! TATTTTTTATGATGATGTTT+TGG + chr6_4:80704291-80704310 Msa0999040:intron 15.0%
!! AAAAATAATAATTATGTCAG+AGG - chr6_4:80704687-80704706 None:intergenic 15.0%
!!! TAATTATTATTTTTTTGGAC+AGG + chr6_4:80704693-80704712 Msa0999040:intron 15.0%
!!! AATTATTATTTTTTTGGACA+GGG + chr6_4:80704694-80704713 Msa0999040:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr6_4:80705238-80705257 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr6_4:80705237-80705256 None:intergenic 15.0%
!!! AATTTTGGAATAATTTTTTG+CGG - chr6_4:80704982-80705001 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - chr6_4:80705017-80705036 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr6_4:80705147-80705166 Msa0999040:intron 15.0%
!! TTGTATGATTAAATCATATT+GGG - chr6_4:80705312-80705331 None:intergenic 15.0%
!! ATTGTATGATTAAATCATAT+TGG - chr6_4:80705313-80705332 None:intergenic 15.0%
!! TAATAGTATGTTTATAAGAA+GGG - chr6_4:80705544-80705563 None:intergenic 15.0%
!!! CTTAAATAAAACATACTTTT+GGG - chr6_4:80706008-80706027 None:intergenic 15.0%
!!! TCTTAAATAAAACATACTTT+TGG - chr6_4:80706009-80706028 None:intergenic 15.0%
!!! ATTTTTATCGATTTATGTTA+GGG + chr6_4:80706359-80706378 Msa0999040:intron 15.0%
!! ACTTTCAAAAATCAAATTTA+AGG - chr6_4:80706502-80706521 None:intergenic 15.0%
!!! TTTTCATATTAAAAATGTCT+CGG + chr6_4:80706634-80706653 Msa0999040:intron 15.0%
!!! TTATGTTTGTTTATGTATTT+TGG + chr6_4:80707005-80707024 Msa0999040:intron 15.0%
!!! AGTTTTTTTTTTCCTTTTTT+CGG + chr6_4:80708366-80708385 Msa0999040:intron 15.0%
!!! TTCATTTTTTAAACTACTAT+TGG + chr6_4:80708681-80708700 Msa0999040:intron 15.0%
!! TATTGGATTAACATATACAA+AGG + chr6_4:80701226-80701245 Msa0999040:five_prime_UTR 20.0%
!! TAAACATATGAATAAACATG+AGG - chr6_4:80701390-80701409 None:intergenic 20.0%
!! AAAATGAGAGAAAATGTTTA+AGG - chr6_4:80701422-80701441 None:intergenic 20.0%
!!! TATGTCATTTTGTTTTTGAA+TGG + chr6_4:80701550-80701569 Msa0999040:intron 20.0%
!! AGATATAATGACATAAAAAC+AGG - chr6_4:80701576-80701595 None:intergenic 20.0%
!! CAAACTAATAATTCAAAGAA+TGG - chr6_4:80701653-80701672 None:intergenic 20.0%
!!! TTACTTTACTTTATTTTCCA+GGG - chr6_4:80702127-80702146 None:intergenic 20.0%
!!! ATTACTTTACTTTATTTTCC+AGG - chr6_4:80702128-80702147 None:intergenic 20.0%
!!! TTTTAATTTTCATTTGTTGG+AGG - chr6_4:80702253-80702272 None:intergenic 20.0%
!!! GTTTTTTCTTTCTTATTTTG+AGG + chr6_4:80702348-80702367 Msa0999040:intron 20.0%
!!! TTTAAAGACAAATTTTGTTG+AGG + chr6_4:80702581-80702600 Msa0999040:intron 20.0%
!!! GTTTTAGAAATTTTTTTGAG+AGG + chr6_4:80702723-80702742 Msa0999040:intron 20.0%
!!! TGTTCTATGGAATTTTATTT+TGG + chr6_4:80702916-80702935 Msa0999040:intron 20.0%
!!! GTTCTATGGAATTTTATTTT+GGG + chr6_4:80702917-80702936 Msa0999040:intron 20.0%
!!! TTCTATGGAATTTTATTTTG+GGG + chr6_4:80702918-80702937 Msa0999040:intron 20.0%
!! AAGAAGAAAAAATCTATGAT+GGG + chr6_4:80703087-80703106 Msa0999040:intron 20.0%
!! TTCAGTTGAATTTCTAAATT+AGG + chr6_4:80703230-80703249 Msa0999040:intron 20.0%
!! TCAGTTGAATTTCTAAATTA+GGG + chr6_4:80703231-80703250 Msa0999040:intron 20.0%
!! ATAAATAAACAACTACTAGA+TGG - chr6_4:80703296-80703315 None:intergenic 20.0%
!!! TAACGAATTTTCCATAAAAT+TGG + chr6_4:80703398-80703417 Msa0999040:intron 20.0%
!! AATTTATCAATTGACTATAG+AGG - chr6_4:80703840-80703859 None:intergenic 20.0%
!! TCTAACAAATATTGAATTAC+AGG + chr6_4:80703914-80703933 Msa0999040:intron 20.0%
!!! CATATATATAGTCTAGTTTA+TGG + chr6_4:80704043-80704062 Msa0999040:intron 20.0%
!!! ATATGATATAGTCTAGTTTA+TGG + chr6_4:80704077-80704096 Msa0999040:intron 20.0%
!! AAATAGCTAATCAAGAATTA+AGG - chr6_4:80704276-80704295 None:intergenic 20.0%
!! CAAACATAGAGATTAATAAT+TGG - chr6_4:80704472-80704491 None:intergenic 20.0%
!!! TTCAATTGCTTTAAAATTGT+CGG - chr6_4:80704549-80704568 None:intergenic 20.0%
!!! ATTATTATTTTTTTGGACAG+GGG + chr6_4:80704695-80704714 Msa0999040:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - chr6_4:80704887-80704906 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - chr6_4:80704888-80704907 None:intergenic 20.0%
!!! AATTACTGTCTATATTTTTC+AGG + chr6_4:80705361-80705380 Msa0999040:intron 20.0%
!!! ATTACTGTCTATATTTTTCA+GGG + chr6_4:80705362-80705381 Msa0999040:intron 20.0%
!! CTAATAGTATGTTTATAAGA+AGG - chr6_4:80705545-80705564 None:intergenic 20.0%
!!! AACTTTTTTTTTGTGTCAAT+AGG + chr6_4:80706108-80706127 Msa0999040:intron 20.0%
!!! GATTTTTATCGATTTATGTT+AGG + chr6_4:80706358-80706377 Msa0999040:intron 20.0%
!!! TTTTAGTAGAATTGACTTTA+GGG + chr6_4:80706412-80706431 Msa0999040:intron 20.0%
!!! TTTGACTTTCAAATTTAGAA+TGG - chr6_4:80706445-80706464 None:intergenic 20.0%
!! TTTCATATTAAAAATGTCTC+GGG + chr6_4:80706635-80706654 Msa0999040:intron 20.0%
!! AATATAAAACACAAAATACC+TGG + chr6_4:80706732-80706751 Msa0999040:intron 20.0%
!!! ACATATTTTTCTAACTAGTT+TGG + chr6_4:80707045-80707064 Msa0999040:intron 20.0%
!! TCATTGGAAACATATTTATT+GGG - chr6_4:80708047-80708066 None:intergenic 20.0%
!! TTCATTGGAAACATATTTAT+TGG - chr6_4:80708048-80708067 None:intergenic 20.0%
!!! AAGAACAGCTATAAATTTTT+TGG + chr6_4:80708250-80708269 Msa0999040:intron 20.0%
!!! TTCTTATCATTTTTACAGTA+TGG + chr6_4:80708785-80708804 Msa0999040:intron 20.0%
!! GTAATTTCAACAATAAGAAT+AGG - chr6_4:80709230-80709249 None:intergenic 20.0%
! ATGAAGCATATAAGCTTATA+CGG + chr6_4:80700966-80700985 Msa0999040:five_prime_UTR 25.0%
! AGTGAAGAAATTAAAAGAGA+AGG - chr6_4:80701043-80701062 None:intergenic 25.0%
! AGCAATTTAGTCTATGATAT+TGG + chr6_4:80701209-80701228 Msa0999040:five_prime_UTR 25.0%
! ATTCATTCTCATAAGAAACA+TGG - chr6_4:80701351-80701370 None:intergenic 25.0%
! TTCAAAGAATGGTGAATATA+TGG - chr6_4:80701642-80701661 None:intergenic 25.0%
! ACATATATGAACATGTTTGA+TGG + chr6_4:80701697-80701716 Msa0999040:intron 25.0%
! CATATATGAACATGTTTGAT+GGG + chr6_4:80701698-80701717 Msa0999040:intron 25.0%
!!! CTATGTTTACTTTTGTTGAA+GGG - chr6_4:80701915-80701934 None:intergenic 25.0%
!!! ACTCTACTTTTGTCTAAAAA+TGG - chr6_4:80702324-80702343 None:intergenic 25.0%
! AAGAAAAAATTGATCTGGTT+TGG - chr6_4:80702802-80702821 None:intergenic 25.0%
!!! ACCAGATCAATTTTTTCTTT+AGG + chr6_4:80702803-80702822 Msa0999040:intron 25.0%
! TCCTAAAGAAAAAATTGATC+TGG - chr6_4:80702807-80702826 None:intergenic 25.0%
! ATTCTAAATACCAACCTTTA+AGG - chr6_4:80703021-80703040 None:intergenic 25.0%
!!! AAGGTTGGTATTTAGAATTT+TGG + chr6_4:80703023-80703042 Msa0999040:intron 25.0%
!!! TTTTTTCTTCTTCTCTCTTT+TGG - chr6_4:80703079-80703098 None:intergenic 25.0%
! GAAGAAGAAAAAATCTATGA+TGG + chr6_4:80703086-80703105 Msa0999040:intron 25.0%
!! GGGTTTCTTTTATATGAAAA+CGG + chr6_4:80703251-80703270 Msa0999040:intron 25.0%
!! TTTCTTTTATATGAAAACGG+AGG + chr6_4:80703254-80703273 Msa0999040:intron 25.0%
!! TTCTTTTATATGAAAACGGA+GGG + chr6_4:80703255-80703274 Msa0999040:intron 25.0%
! TGTAGTACAATTTACAATAC+AGG + chr6_4:80703433-80703452 Msa0999040:intron 25.0%
! GTAGTACAATTTACAATACA+GGG + chr6_4:80703434-80703453 Msa0999040:intron 25.0%
! CTATTCAAGTATATGATCAA+TGG - chr6_4:80703517-80703536 None:intergenic 25.0%
! AACATTAATAGTAACCAACA+AGG + chr6_4:80703583-80703602 Msa0999040:CDS 25.0%
! TTTAGTTAGTGTGCTTAATT+TGG + chr6_4:80703802-80703821 Msa0999040:intron 25.0%
! ATGACAAGAATATACTATCA+TGG - chr6_4:80703879-80703898 None:intergenic 25.0%
! AAAATTGGAAAAGACTGTTT+GGG + chr6_4:80703950-80703969 Msa0999040:CDS 25.0%
! TATAATGCTTATTATGCACA+AGG - chr6_4:80704121-80704140 None:intergenic 25.0%
! ACAATGCATTATTATATGCA+GGG + chr6_4:80704167-80704186 Msa0999040:intron 25.0%
! GTAGTCTAATGACTATAAAT+GGG - chr6_4:80704216-80704235 None:intergenic 25.0%
! AGTAGTCTAATGACTATAAA+TGG - chr6_4:80704217-80704236 None:intergenic 25.0%
!!! GATTTCTTGTTCAGTTTTAA+AGG + chr6_4:80704595-80704614 Msa0999040:intron 25.0%
! ATTCCCATACAAATATGATT+GGG + chr6_4:80704751-80704770 Msa0999040:intron 25.0%
! TAACCCAATCATATTTGTAT+GGG - chr6_4:80704757-80704776 None:intergenic 25.0%
! TTAACCCAATCATATTTGTA+TGG - chr6_4:80704758-80704777 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG - chr6_4:80704854-80704873 None:intergenic 25.0%
!! TGGATGTAGAAATCAAATTT+TGG - chr6_4:80704997-80705016 None:intergenic 25.0%
!!! TTACAATGTCGCTATTTTAT+AGG + chr6_4:80705268-80705287 Msa0999040:intron 25.0%
!!! TACAATGTCGCTATTTTATA+GGG + chr6_4:80705269-80705288 Msa0999040:intron 25.0%
! TTATGCTTACTAGTTGAATT+AGG - chr6_4:80705395-80705414 None:intergenic 25.0%
!! CTTGCATACTAGTTTATTAA+AGG - chr6_4:80705488-80705507 None:intergenic 25.0%
!! AGGTTCATATTTTATCTGTT+TGG + chr6_4:80705867-80705886 Msa0999040:CDS 25.0%
!! TCATATTTTATCTGTTTGGT+TGG + chr6_4:80705871-80705890 Msa0999040:CDS 25.0%
!! CATATTTTATCTGTTTGGTT+GGG + chr6_4:80705872-80705891 Msa0999040:CDS 25.0%
!!! GGATAATTTTGATGTACATT+TGG + chr6_4:80705893-80705912 Msa0999040:CDS 25.0%
! AAGTGATGAAAAATATGTTG+AGG - chr6_4:80705942-80705961 None:intergenic 25.0%
!! TCAACATATTTTTCATCACT+TGG + chr6_4:80705941-80705960 Msa0999040:CDS 25.0%
! TCACATGAAAATCATATGAT+GGG - chr6_4:80706061-80706080 None:intergenic 25.0%
! TTCACATGAAAATCATATGA+TGG - chr6_4:80706062-80706081 None:intergenic 25.0%
! ATGAAAATTTCCCTAGAAAA+AGG - chr6_4:80706085-80706104 None:intergenic 25.0%
!! TTTTTGTGTCAATAGGTAAA+TGG + chr6_4:80706115-80706134 Msa0999040:intron 25.0%
! CATCACAAGTTAGAAATATT+AGG + chr6_4:80706389-80706408 Msa0999040:intron 25.0%
!!! GTTTTAGTAGAATTGACTTT+AGG + chr6_4:80706411-80706430 Msa0999040:intron 25.0%
! ATTATTATGATGTCACAAGA+TGG - chr6_4:80707117-80707136 None:intergenic 25.0%
! AAATTCATACAAACCAATTG+TGG + chr6_4:80707261-80707280 Msa0999040:intron 25.0%
! TCATTTACTATGTGATAAGA+TGG + chr6_4:80707415-80707434 Msa0999040:intron 25.0%
! AATGTACAATGACAACAAAA+GGG - chr6_4:80707506-80707525 None:intergenic 25.0%
!!! ATATCATTAATTTGCAGCTA+AGG + chr6_4:80707767-80707786 Msa0999040:intron 25.0%
! TCAAAGAAAAGAAAAACAAG+TGG + chr6_4:80707981-80708000 Msa0999040:intron 25.0%
! CAAAGAAAAGAAAAACAAGT+GGG + chr6_4:80707982-80708001 Msa0999040:intron 25.0%
! TTTATAGTAGCATGTGTATT+TGG + chr6_4:80708171-80708190 Msa0999040:intron 25.0%
! TAATCTATTTAGCGTATGTT+AGG + chr6_4:80708432-80708451 Msa0999040:intron 25.0%
! TAGAACAATAGATCTTATGA+AGG - chr6_4:80708746-80708765 None:intergenic 25.0%
! ACTATCTGATAGATCAAAAT+TGG - chr6_4:80708909-80708928 None:intergenic 25.0%
!!! TAATTTTAGTCAGAACCAAT+TGG + chr6_4:80708931-80708950 Msa0999040:three_prime_UTR 25.0%
! AGGATATATGAACATGTAAA+TGG - chr6_4:80709049-80709068 None:intergenic 25.0%
! TTTACATGTTCATATATCCT+TGG + chr6_4:80709049-80709068 Msa0999040:three_prime_UTR 25.0%
! AATTTATCAGTTCAATGCAT+TGG + chr6_4:80709169-80709188 Msa0999040:three_prime_UTR 25.0%
! ATTTATCAGTTCAATGCATT+GGG + chr6_4:80709170-80709189 Msa0999040:three_prime_UTR 25.0%
AGAAATTAAAAGAGAAGGAG+TGG - chr6_4:80701038-80701057 None:intergenic 30.0%
! TTTCTCTTGTTTCTCTCAAT+TGG + chr6_4:80701148-80701167 Msa0999040:five_prime_UTR 30.0%
GAGAGAAAAAGAGAGATTAA+GGG + chr6_4:80701170-80701189 Msa0999040:five_prime_UTR 30.0%
! ACTTTTGTTGAAGGGTAAAT+AGG - chr6_4:80701907-80701926 None:intergenic 30.0%
!! CCTATGTTTACTTTTGTTGA+AGG - chr6_4:80701916-80701935 None:intergenic 30.0%
CCTTCAACAAAAGTAAACAT+AGG + chr6_4:80701913-80701932 Msa0999040:intron 30.0%
AAAAACTCTTTAGCCTACAA+AGG + chr6_4:80702173-80702192 Msa0999040:intron 30.0%
TTTACCTTCTACAAGAAGAT+TGG - chr6_4:80702862-80702881 None:intergenic 30.0%
AAATTCCATAGAACATTCCT+TGG - chr6_4:80702911-80702930 None:intergenic 30.0%
!!! TATGGAATTTTATTTTGGGG+TGG + chr6_4:80702921-80702940 Msa0999040:intron 30.0%
!!! ATGGAATTTTATTTTGGGGT+GGG + chr6_4:80702922-80702941 Msa0999040:intron 30.0%
CATTAAGATTCCCTTCAATT+TGG - chr6_4:80702984-80703003 None:intergenic 30.0%
CTTCTAAATGATTCATGTGT+AGG - chr6_4:80703156-80703175 None:intergenic 30.0%
AATCAGAACTCTAACCTTAA+CGG + chr6_4:80703176-80703195 Msa0999040:intron 30.0%
! ATAAAAACTTGTTCCCGTTA+AGG - chr6_4:80703193-80703212 None:intergenic 30.0%
TGTGAAAGGAAAAAAGCTAA+TGG + chr6_4:80703322-80703341 Msa0999040:intron 30.0%
CTTCAACTATAAGCTTCAAT+TGG - chr6_4:80703377-80703396 None:intergenic 30.0%
! GAAAAGACTCACCAATTTTA+TGG - chr6_4:80703412-80703431 None:intergenic 30.0%
AGAATAGAAGATCTTCTTAG+TGG + chr6_4:80703462-80703481 Msa0999040:five_prime_UTR 30.0%
TGAATAGTGTGTAACATTAG+TGG + chr6_4:80703530-80703549 Msa0999040:five_prime_UTR 30.0%
ACATTAGTGGAAGAAAAAGA+TGG + chr6_4:80703543-80703562 Msa0999040:exon 30.0%
!! TTAATGTTGTTGCTTTCTCT+TGG - chr6_4:80703571-80703590 None:intergenic 30.0%
AAATGCATCAAATCCTTTGA+TGG + chr6_4:80703645-80703664 Msa0999040:CDS 30.0%
!!! TTTTCTAGCTGCTAATATGT+TGG + chr6_4:80703690-80703709 Msa0999040:CDS 30.0%
CAATTGACTATAGAGGATTT+AGG - chr6_4:80703833-80703852 None:intergenic 30.0%
!!! GGTTTTAAAGCATGCAAAAT+TGG + chr6_4:80703935-80703954 Msa0999040:intron 30.0%
CAAAATTGGAAAAGACTGTT+TGG + chr6_4:80703949-80703968 Msa0999040:CDS 30.0%
GACAATGCATTATTATATGC+AGG + chr6_4:80704166-80704185 Msa0999040:intron 30.0%
AGAGATCAATCAATTCAGAA+GGG - chr6_4:80704427-80704446 None:intergenic 30.0%
TAGAGATCAATCAATTCAGA+AGG - chr6_4:80704428-80704447 None:intergenic 30.0%
TCTGAATTGATTGATCTCTA+TGG + chr6_4:80704428-80704447 Msa0999040:intron 30.0%
ATCAAGCCAAATGATTCAAT+CGG + chr6_4:80704511-80704530 Msa0999040:intron 30.0%
ATTCAACCGATTGAATCATT+TGG - chr6_4:80704520-80704539 None:intergenic 30.0%
TCAGAGGAATGACAAATAAT+AGG - chr6_4:80704671-80704690 None:intergenic 30.0%
CATTCCCATACAAATATGAT+TGG + chr6_4:80704750-80704769 Msa0999040:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr6_4:80704794-80704813 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr6_4:80704795-80704814 None:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG - chr6_4:80704855-80704874 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - chr6_4:80705114-80705133 None:intergenic 30.0%
!!! TAACCAAACTTTGTTTTAGC+AGG + chr6_4:80705175-80705194 Msa0999040:intron 30.0%
!!! AACCAAACTTTGTTTTAGCA+GGG + chr6_4:80705176-80705195 Msa0999040:intron 30.0%
CAGAAAAATATGCAGAAAGA+TGG + chr6_4:80705451-80705470 Msa0999040:intron 30.0%
! ACGATATGATGTGTTTTCAT+TGG - chr6_4:80705688-80705707 None:intergenic 30.0%
TGATGAAAAATATGTTGAGG+AGG - chr6_4:80705939-80705958 None:intergenic 30.0%
! AAATCATATGATGGGAGAAA+AGG - chr6_4:80706053-80706072 None:intergenic 30.0%
! TTTCATGTGAACCTTTTTCT+AGG + chr6_4:80706071-80706090 Msa0999040:intron 30.0%
! TTCATGTGAACCTTTTTCTA+GGG + chr6_4:80706072-80706091 Msa0999040:intron 30.0%
!! ATTTTAAGTCCAGGATTGAT+GGG + chr6_4:80706142-80706161 Msa0999040:intron 30.0%
TATATGTTGTCTTCCTTTGT+TGG + chr6_4:80706167-80706186 Msa0999040:intron 30.0%
TTTAGCATGTATTTAGTGTG+CGG + chr6_4:80706264-80706283 Msa0999040:intron 30.0%
!! GATTTTTGAAAGTACAATCG+TGG + chr6_4:80706509-80706528 Msa0999040:intron 30.0%
ACATAAGCTTAAAGTGTGTT+TGG + chr6_4:80706538-80706557 Msa0999040:intron 30.0%
! TTAAAGTGTGTTTGGAACAA+CGG + chr6_4:80706546-80706565 Msa0999040:intron 30.0%
AAAGATTCTAAGCATGTGTT+TGG - chr6_4:80706689-80706708 None:intergenic 30.0%
! CTTAGAATCTTTTCTCCAAA+AGG + chr6_4:80706697-80706716 Msa0999040:intron 30.0%
! TGTGTTTTATATTGCATCCA+TGG - chr6_4:80706725-80706744 None:intergenic 30.0%
ATATGTTCTCAAGTAACAAG+AGG - chr6_4:80707031-80707050 None:intergenic 30.0%
ACAAAACTGTGAATCAACTA+TGG + chr6_4:80707308-80707327 Msa0999040:intron 30.0%
TTATGAATCAGCTGTCTTAT+GGG - chr6_4:80707343-80707362 None:intergenic 30.0%
ATTATGAATCAGCTGTCTTA+TGG - chr6_4:80707344-80707363 None:intergenic 30.0%
TTAAGCAATGTTGTCTAAAC+TGG - chr6_4:80707394-80707413 None:intergenic 30.0%
GAATGTACAATGACAACAAA+AGG - chr6_4:80707507-80707526 None:intergenic 30.0%
AACATTACTGTCTTCAATGT+TGG + chr6_4:80707574-80707593 Msa0999040:intron 30.0%
! GTTATTGCAACATTTTCAAC+AGG + chr6_4:80707651-80707670 Msa0999040:CDS 30.0%
CATAGATTCTAAATGCTTTC+AGG + chr6_4:80707674-80707693 Msa0999040:CDS 30.0%
!! ATTAATTTGCAGCTAAGGAA+GGG + chr6_4:80707772-80707791 Msa0999040:intron 30.0%
TGGAAAAAACCATATCCATA+TGG - chr6_4:80707826-80707845 None:intergenic 30.0%
TACTTTGCAATGCTATTGAT+TGG + chr6_4:80707871-80707890 Msa0999040:CDS 30.0%
CATCATTCAATGAGAAAGTA+TGG + chr6_4:80707904-80707923 Msa0999040:intron 30.0%
TTCCATCTTGTTCATGTTAT+GGG + chr6_4:80707927-80707946 Msa0999040:intron 30.0%
ATATGTTTCCAATGAAGCTT+AGG + chr6_4:80708052-80708071 Msa0999040:intron 30.0%
CAGAATAGTAAATGAATGGT+TGG + chr6_4:80708325-80708344 Msa0999040:CDS 30.0%
ATCATATTGCTTCCGAAAAA+AGG - chr6_4:80708381-80708400 None:intergenic 30.0%
TAGCTTATAGAAAATCATGG+TGG - chr6_4:80708490-80708509 None:intergenic 30.0%
GTGTAGCTTATAGAAAATCA+TGG - chr6_4:80708493-80708512 None:intergenic 30.0%
TTGTTCTAATGCACATCTAA+TGG + chr6_4:80708758-80708777 Msa0999040:intron 30.0%
TACATAGTACGAGCATAATT+GGG - chr6_4:80708876-80708895 None:intergenic 30.0%
TTACATAGTACGAGCATAAT+TGG - chr6_4:80708877-80708896 None:intergenic 30.0%
ATTATGCTCGTACTATGTAA+TGG + chr6_4:80708877-80708896 Msa0999040:three_prime_UTR 30.0%
GATACATGTTCATATATCCT+TGG + chr6_4:80709091-80709110 Msa0999040:intron 30.0%
CGTTACTTACAATCATTAGA+TGG + chr6_4:80709073-80709092 Msa0999040:intron 30.0%
AATTAAAAGAGAAGGAGTGG+TGG - chr6_4:80701035-80701054 None:intergenic 35.0%
GGAGAGAAAAAGAGAGATTA+AGG + chr6_4:80701169-80701188 Msa0999040:five_prime_UTR 35.0%
TTGTTTCCTTTGTAGCTTTC+GGG - chr6_4:80702204-80702223 None:intergenic 35.0%
CTTGTTTCCTTTGTAGCTTT+CGG - chr6_4:80702205-80702224 None:intergenic 35.0%
TTACTCTATATAGTTGTGCG+TGG + chr6_4:80702546-80702565 Msa0999040:intron 35.0%
CATACCAATCTTCTTGTAGA+AGG + chr6_4:80702855-80702874 Msa0999040:intron 35.0%
!!! AATTTTATTTTGGGGTGGGA+GGG + chr6_4:80702926-80702945 Msa0999040:intron 35.0%
ACTACTACCATCCAAATTGA+AGG + chr6_4:80702970-80702989 Msa0999040:intron 35.0%
CTACTACCATCCAAATTGAA+GGG + chr6_4:80702971-80702990 Msa0999040:intron 35.0%
AAGATTCCCTTCAATTTGGA+TGG - chr6_4:80702980-80702999 None:intergenic 35.0%
TGAAGGGAATCTTAATGACA+TGG + chr6_4:80702987-80703006 Msa0999040:intron 35.0%
ATCAGAACTCTAACCTTAAC+GGG + chr6_4:80703177-80703196 Msa0999040:intron 35.0%
AATAGTAACCAACAAGGTTG+TGG + chr6_4:80703589-80703608 Msa0999040:CDS 35.0%
TAGACATATCTTGCCATCAA+AGG - chr6_4:80703661-80703680 None:intergenic 35.0%
! TTGATGGCAAGATATGTCTA+TGG + chr6_4:80703661-80703680 Msa0999040:CDS 35.0%
TGACTATAGAGGATTTAGGT+TGG - chr6_4:80703829-80703848 None:intergenic 35.0%
GCATTATTATATGCAGGGAT+CGG + chr6_4:80704172-80704191 Msa0999040:intron 35.0%
CATTATTATATGCAGGGATC+GGG + chr6_4:80704173-80704192 Msa0999040:intron 35.0%
ATTATTATATGCAGGGATCG+GGG + chr6_4:80704174-80704193 Msa0999040:intron 35.0%
!!! TGATGTTTTGGTCAACTACA+AGG + chr6_4:80704303-80704322 Msa0999040:intron 35.0%
TGAATGAACCAAGAGATACA+TGG + chr6_4:80704336-80704355 Msa0999040:intron 35.0%
GCAATTGAACTATGACTTGA+AGG + chr6_4:80704560-80704579 Msa0999040:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr6_4:80704810-80704829 None:intergenic 35.0%
TGCTTACTAGTTGAATTAGG+AGG - chr6_4:80705392-80705411 None:intergenic 35.0%
GCATAATCAGCTTCATTACA+TGG + chr6_4:80705409-80705428 Msa0999040:intron 35.0%
! GATGTGTTTTCATTGGATGT+CGG - chr6_4:80705681-80705700 None:intergenic 35.0%
CAAATACCATCACATGGATT+TGG - chr6_4:80705843-80705862 None:intergenic 35.0%
GAGATACACTTGTCATGATT+TGG - chr6_4:80705981-80706000 None:intergenic 35.0%
TTGTGTCAATAGGTAAATGG+TGG + chr6_4:80706118-80706137 Msa0999040:intron 35.0%
!! CATTTTAAGTCCAGGATTGA+TGG + chr6_4:80706141-80706160 Msa0999040:intron 35.0%
!! TTTTAAGTCCAGGATTGATG+GGG + chr6_4:80706143-80706162 Msa0999040:intron 35.0%
!! AGTAGAATTGACTTTAGGGT+TGG + chr6_4:80706416-80706435 Msa0999040:intron 35.0%
CAAAAATTTGATTGCGAACG+TGG + chr6_4:80706661-80706680 Msa0999040:intron 35.0%
ATTATGATGTCACAAGATGG+TGG - chr6_4:80707114-80707133 None:intergenic 35.0%
AACTTAACCAGAGAAGAAAC+CGG + chr6_4:80707164-80707183 Msa0999040:intron 35.0%
CATGGTTCAATTCGTCTAAT+CGG + chr6_4:80707201-80707220 Msa0999040:intron 35.0%
TTCGTCTAATCGGTTAAACT+AGG + chr6_4:80707211-80707230 Msa0999040:intron 35.0%
TCGTCTAATCGGTTAAACTA+GGG + chr6_4:80707212-80707231 Msa0999040:intron 35.0%
AAACCAATTGTGGTTCAACT+CGG + chr6_4:80707271-80707290 Msa0999040:intron 35.0%
TGACAACAAAAGGGAAAACA+TGG - chr6_4:80707497-80707516 None:intergenic 35.0%
TGACATGTGACAATAACTGT+TGG + chr6_4:80707598-80707617 Msa0999040:intron 35.0%
!! CATTAATTTGCAGCTAAGGA+AGG + chr6_4:80707771-80707790 Msa0999040:intron 35.0%
GAAGAAGATGATGTTCCATA+TGG + chr6_4:80707808-80707827 Msa0999040:CDS 35.0%
GATGATGTTCCATATGGATA+TGG + chr6_4:80707814-80707833 Msa0999040:CDS 35.0%
!!! TTCCATTTTGTTTTTGCCAC+AGG + chr6_4:80707841-80707860 Msa0999040:CDS 35.0%
! TTGCAATGCTATTGATTGGA+TGG + chr6_4:80707875-80707894 Msa0999040:CDS 35.0%
GTTCCATCTTGTTCATGTTA+TGG + chr6_4:80707926-80707945 Msa0999040:intron 35.0%
AGAATACACCTAAGCTTCAT+TGG - chr6_4:80708063-80708082 None:intergenic 35.0%
TGAAGCTTAGGTGTATTCTT+TGG + chr6_4:80708064-80708083 Msa0999040:intron 35.0%
GGGTCAGAATAGTAAATGAA+TGG + chr6_4:80708321-80708340 Msa0999040:CDS 35.0%
TTAGCGTATGTTAGGTATCA+CGG + chr6_4:80708440-80708459 Msa0999040:intron 35.0%
TTGTAGCTTCTACGAAATCA+CGG + chr6_4:80708514-80708533 Msa0999040:intron 35.0%
ATTTGATGTCCACTACATGT+CGG + chr6_4:80708615-80708634 Msa0999040:intron 35.0%
CATTTGTGCTAGAATCCAAT+TGG - chr6_4:80708949-80708968 None:intergenic 35.0%
! TATTTCTGTGTACCATCCTT+TGG - chr6_4:80709022-80709041 None:intergenic 35.0%
ATGATTGTAAGTAACGTCCA+AGG - chr6_4:80709069-80709088 None:intergenic 35.0%
ATGATTGTAAGTAACGTCCA+AGG - chr6_4:80709069-80709088 None:intergenic 35.0%
TCGAGTTTAGTGAAAATCCC+TGG + chr6_4:80702107-80702126 Msa0999040:intron 40.0%
! CTTTCGGGATTTTCCTTTGT+AGG - chr6_4:80702189-80702208 None:intergenic 40.0%
GAAAATCCCGAAAGCTACAA+AGG + chr6_4:80702195-80702214 Msa0999040:intron 40.0%
GTAGAAGGTAAATCAACCAC+AGG + chr6_4:80702870-80702889 Msa0999040:intron 40.0%
GTACGATAAAGTCTTACCTG+TGG - chr6_4:80702889-80702908 None:intergenic 40.0%
GGTAAGACTTTATCGTACCA+AGG + chr6_4:80702891-80702910 Msa0999040:intron 40.0%
TCGTACCAAGGAATGTTCTA+TGG + chr6_4:80702903-80702922 Msa0999040:intron 40.0%
!!! GAATTTTATTTTGGGGTGGG+AGG + chr6_4:80702925-80702944 Msa0999040:intron 40.0%
GGGAATCTTAATGACATGGT+AGG + chr6_4:80702991-80703010 Msa0999040:intron 40.0%
ACATGGTAGGCATACCTTAA+AGG + chr6_4:80703004-80703023 Msa0999040:intron 40.0%
AGAAGATCTTCTTAGTGGAG+TGG + chr6_4:80703467-80703486 Msa0999040:five_prime_UTR 40.0%
! GTGGACTAAAGGATTCTTCA+TGG + chr6_4:80703608-80703627 Msa0999040:CDS 40.0%
TAGCTGCTAATATGTTGGCA+TGG + chr6_4:80703695-80703714 Msa0999040:CDS 40.0%
AGCTGCTAATATGTTGGCAT+GGG + chr6_4:80703696-80703715 Msa0999040:CDS 40.0%
!! TAGTGCATTGACTGAACTCA+AGG + chr6_4:80703744-80703763 Msa0999040:CDS 40.0%
!! AGTGCATTGACTGAACTCAA+GGG + chr6_4:80703745-80703764 Msa0999040:CDS 40.0%
!!! TGGTGTTTTGAGAGTTAGCA+TGG + chr6_4:80703979-80703998 Msa0999040:CDS 40.0%
!!! GGTGTTTTGAGAGTTAGCAT+GGG + chr6_4:80703980-80703999 Msa0999040:CDS 40.0%
GGGCAACAAAGATTGTTCTA+TGG + chr6_4:80704372-80704391 Msa0999040:intron 40.0%
CTATGACTTGAAGGTTTCGT+TGG + chr6_4:80704569-80704588 Msa0999040:intron 40.0%
!!! AAGTTGCACATTTTGGAGCA+GGG + chr6_4:80704718-80704737 Msa0999040:intron 40.0%
GTCCCTGCTAAAACAAAGTT+TGG - chr6_4:80705181-80705200 None:intergenic 40.0%
CTGTTGCAAATACCATCACA+TGG - chr6_4:80705849-80705868 None:intergenic 40.0%
CATGTGATGGTATTTGCAAC+AGG + chr6_4:80705847-80705866 Msa0999040:CDS 40.0%
!! AATGGTGGCATTTTAAGTCC+AGG + chr6_4:80706133-80706152 Msa0999040:intron 40.0%
TTCTGATTGCACACCAACAA+AGG - chr6_4:80706183-80706202 None:intergenic 40.0%
TTTGTTGGTGTGCAATCAGA+AGG + chr6_4:80706182-80706201 Msa0999040:intron 40.0%
! CTTTTCTCCAAAAGGAACCA+TGG + chr6_4:80706705-80706724 Msa0999040:intron 40.0%
! ATTGCATCCATGGTTCCTTT+TGG - chr6_4:80706715-80706734 None:intergenic 40.0%
ATAAGACATGATTGCATGCC+AGG - chr6_4:80706753-80706772 None:intergenic 40.0%
GATCAATGCATCAGAACATC+AGG + chr6_4:80706880-80706899 Msa0999040:CDS 40.0%
! GATGTTTTGCCAGTCTGTTT+TGG - chr6_4:80706914-80706933 None:intergenic 40.0%
ATTCAACCAGTTGAATCGAC+CGG + chr6_4:80707362-80707381 Msa0999040:intron 40.0%
!! TGTTGGCAGAGCTTTGTTAT+TGG + chr6_4:80707615-80707634 Msa0999040:intron 40.0%
CTCCTGTGGCAAAAACAAAA+TGG - chr6_4:80707846-80707865 None:intergenic 40.0%
TGCCCATAACATGAACAAGA+TGG - chr6_4:80707932-80707951 None:intergenic 40.0%
CATGTTATGGGCATCATACT+TGG + chr6_4:80707939-80707958 Msa0999040:intron 40.0%
TGGAAACATTGTTCTGCAGA+TGG + chr6_4:80708270-80708289 Msa0999040:intron 40.0%
GATACCAAAGACACACTTAG+TGG + chr6_4:80708570-80708589 Msa0999040:intron 40.0%
TGCTGATAGCTCCAATTGTA+TGG + chr6_4:80708809-80708828 Msa0999040:CDS 40.0%
GATAGCTCCAATTGTATGGA+AGG + chr6_4:80708813-80708832 Msa0999040:CDS 40.0%
TGTCTTGCCTTCCATACAAT+TGG - chr6_4:80708823-80708842 None:intergenic 40.0%
TGGGTTCTTGTAGAAGTCTA+TGG + chr6_4:80709189-80709208 Msa0999040:three_prime_UTR 40.0%
GGTAGGCATACCTTAAAGGT+TGG + chr6_4:80703008-80703027 Msa0999040:intron 45.0%
CCTTTAGTCCACAACCTTGT+TGG - chr6_4:80703600-80703619 None:intergenic 45.0%
! CCAACAAGGTTGTGGACTAA+AGG + chr6_4:80703597-80703616 Msa0999040:CDS 45.0%
! AAAGACTGTTTGGGAGCACA+TGG + chr6_4:80703959-80703978 Msa0999040:CDS 45.0%
TTGTCCCTGTGTTATGCTCA+CGG - chr6_4:80704151-80704170 None:intergenic 45.0%
GACTATAAATGGGATGTCCG+AGG - chr6_4:80704206-80704225 None:intergenic 45.0%
CCAGAATGCCATGTATCTCT+TGG - chr6_4:80704347-80704366 None:intergenic 45.0%
CCAAGAGATACATGGCATTC+TGG + chr6_4:80704344-80704363 Msa0999040:intron 45.0%
GAGATACATGGCATTCTGGA+TGG + chr6_4:80704348-80704367 Msa0999040:intron 45.0%
ATACATGGCATTCTGGATGG+TGG + chr6_4:80704351-80704370 Msa0999040:intron 45.0%
TACATGGCATTCTGGATGGT+GGG + chr6_4:80704352-80704371 Msa0999040:intron 45.0%
! ACAGGGGAAGTTGCACATTT+TGG + chr6_4:80704711-80704730 Msa0999040:intron 45.0%
!!! GAAGTTGCACATTTTGGAGC+AGG + chr6_4:80704717-80704736 Msa0999040:intron 45.0%
ACATATAGCCCCATCAATCC+TGG - chr6_4:80706154-80706173 None:intergenic 45.0%
! CTGATGCATTGATCTCCTTC+TGG - chr6_4:80706874-80706893 None:intergenic 45.0%
GCACTGTAACCAAAACAGAC+TGG + chr6_4:80706902-80706921 Msa0999040:CDS 45.0%
! GAACCGAGTTGAACCACAAT+TGG - chr6_4:80707277-80707296 None:intergenic 45.0%
GAATCAGCTGTCTTATGGGT+TGG - chr6_4:80707339-80707358 None:intergenic 45.0%
TTGTCTAAACTGGACCGAAC+CGG - chr6_4:80707384-80707403 None:intergenic 45.0%
GGAACATCATCTTCTTCTGC+TGG - chr6_4:80707805-80707824 None:intergenic 45.0%
TGCAAAGTACATAGCTCCTG+TGG - chr6_4:80707860-80707879 None:intergenic 45.0%
TGCAGATGGTCACTTGATGT+GGG + chr6_4:80708284-80708303 Msa0999040:intron 45.0%
TACTATTCTGACCCAAGCAC+TGG - chr6_4:80708315-80708334 None:intergenic 45.0%
CGTATGTTAGGTATCACGGT+GGG + chr6_4:80708444-80708463 Msa0999040:intron 45.0%
GTGTGTCTTTGGTATCACAG+TGG - chr6_4:80708566-80708585 None:intergenic 45.0%
GTTGCCACTAAGTGTGTCTT+TGG - chr6_4:80708577-80708596 None:intergenic 45.0%
TGTGAGACGACACTAACACA+TGG + chr6_4:80708638-80708657 Msa0999040:intron 45.0%
ACTCCTCTCATTCCATCCAA+AGG + chr6_4:80709003-80709022 Msa0999040:three_prime_UTR 45.0%
CATCCTTTGGATGGAATGAG+AGG - chr6_4:80709009-80709028 None:intergenic 45.0%
CTCTCATTCCATCCAAAGGA+TGG + chr6_4:80709007-80709026 Msa0999040:three_prime_UTR 45.0%
TCTGTGTACCATCCTTTGGA+TGG - chr6_4:80709018-80709037 None:intergenic 45.0%
!!! TCTATTATTTATTTAAAATA+GGG + chr6_4:80704624-80704643 Msa0999040:intron 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG + chr6_4:80705208-80705227 Msa0999040:intron 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG + chr6_4:80705209-80705228 Msa0999040:intron 5.0%
!!! TTATAATTTTATGAATTTAA+TGG + chr6_4:80705627-80705646 Msa0999040:intron 5.0%
!!! TTTATTTTGGGGTGGGAGGG+TGG + chr6_4:80702929-80702948 Msa0999040:intron 50.0%
!!! TTATTTTGGGGTGGGAGGGT+GGG + chr6_4:80702930-80702949 Msa0999040:intron 50.0%
ACATCCCGTGAGCATAACAC+AGG + chr6_4:80704143-80704162 Msa0999040:intron 50.0%
CATCCCGTGAGCATAACACA+GGG + chr6_4:80704144-80704163 Msa0999040:intron 50.0%
TGTCCCTGTGTTATGCTCAC+GGG - chr6_4:80704150-80704169 None:intergenic 50.0%
GTGCAGCCAAATCCATGTGA+TGG + chr6_4:80705834-80705853 Msa0999040:intron 50.0%
TGTGCATGCAGTGAACCAGA+AGG + chr6_4:80706856-80706875 Msa0999040:CDS 50.0%
!! AGTCTCACCGGTTTCTTCTC+TGG - chr6_4:80707174-80707193 None:intergenic 50.0%
CCATGACTCAGAAGTCTCAC+CGG - chr6_4:80707186-80707205 None:intergenic 50.0%
ACCAGTTGAATCGACCGGTT+CGG + chr6_4:80707367-80707386 Msa0999040:intron 50.0%
CTGCAGATGGTCACTTGATG+TGG + chr6_4:80708283-80708302 Msa0999040:intron 50.0%
GCGTATGTTAGGTATCACGG+TGG + chr6_4:80708443-80708462 Msa0999040:intron 50.0%
!!! TATTTTGGGGTGGGAGGGTG+GGG + chr6_4:80702931-80702950 Msa0999040:intron 55.0%
CCGGTGAGACTTCTGAGTCA+TGG + chr6_4:80707183-80707202 Msa0999040:intron 55.0%
! ACCGAACCGGTCGATTCAAC+TGG - chr6_4:80707371-80707390 None:intergenic 55.0%
GATGGTCACTTGATGTGGGC+TGG + chr6_4:80708288-80708307 Msa0999040:intron 55.0%
CGTCTCACACCGACATGTAG+TGG - chr6_4:80708627-80708646 None:intergenic 55.0%
!!! ATTTTGGGGTGGGAGGGTGG+GGG + chr6_4:80702932-80702951 Msa0999040:intron 60.0%
AGGGATCGGGGTTCGAACCT+CGG + chr6_4:80704186-80704205 Msa0999040:intron 60.0%
!! ATGTGGGCTGGACCAGTGCT+TGG + chr6_4:80708300-80708319 Msa0999040:CDS 60.0%
!! TGTGGGCTGGACCAGTGCTT+GGG + chr6_4:80708301-80708320 Msa0999040:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 80700936 80709259 80700936 ID=Msa0999040;Name=Msa0999040
chr6_4 mRNA 80700936 80709259 80700936 ID=Msa0999040-mRNA-1;Parent=Msa0999040;Name=Msa0999040-mRNA-1;_AED=0.16;_eAED=0.16;_QI=419|0.77|0.9|1|0.55|0.5|10|359|292
chr6_4 exon 80700936 80701247 80700936 ID=Msa0999040-mRNA-1:exon:15339;Parent=Msa0999040-mRNA-1
chr6_4 exon 80703455 80703766 80703455 ID=Msa0999040-mRNA-1:exon:15340;Parent=Msa0999040-mRNA-1
chr6_4 exon 80703936 80704009 80703936 ID=Msa0999040-mRNA-1:exon:15341;Parent=Msa0999040-mRNA-1
chr6_4 exon 80705840 80706011 80705840 ID=Msa0999040-mRNA-1:exon:15342;Parent=Msa0999040-mRNA-1
chr6_4 exon 80706848 80706936 80706848 ID=Msa0999040-mRNA-1:exon:15343;Parent=Msa0999040-mRNA-1
chr6_4 exon 80707624 80707695 80707624 ID=Msa0999040-mRNA-1:exon:15344;Parent=Msa0999040-mRNA-1
chr6_4 exon 80707784 80707920 80707784 ID=Msa0999040-mRNA-1:exon:15345;Parent=Msa0999040-mRNA-1
chr6_4 exon 80708289 80708362 80708289 ID=Msa0999040-mRNA-1:exon:15346;Parent=Msa0999040-mRNA-1
chr6_4 exon 80708803 80709091 80708803 ID=Msa0999040-mRNA-1:exon:15347;Parent=Msa0999040-mRNA-1
chr6_4 exon 80709134 80709259 80709134 ID=Msa0999040-mRNA-1:exon:15348;Parent=Msa0999040-mRNA-1
chr6_4 five_prime_UTR 80700936 80701247 80700936 ID=Msa0999040-mRNA-1:five_prime_utr;Parent=Msa0999040-mRNA-1
chr6_4 five_prime_UTR 80703455 80703561 80703455 ID=Msa0999040-mRNA-1:five_prime_utr;Parent=Msa0999040-mRNA-1
chr6_4 CDS 80703562 80703766 80703562 ID=Msa0999040-mRNA-1:cds;Parent=Msa0999040-mRNA-1
chr6_4 CDS 80703936 80704009 80703936 ID=Msa0999040-mRNA-1:cds;Parent=Msa0999040-mRNA-1
chr6_4 CDS 80705840 80706011 80705840 ID=Msa0999040-mRNA-1:cds;Parent=Msa0999040-mRNA-1
chr6_4 CDS 80706848 80706936 80706848 ID=Msa0999040-mRNA-1:cds;Parent=Msa0999040-mRNA-1
chr6_4 CDS 80707624 80707695 80707624 ID=Msa0999040-mRNA-1:cds;Parent=Msa0999040-mRNA-1
chr6_4 CDS 80707784 80707920 80707784 ID=Msa0999040-mRNA-1:cds;Parent=Msa0999040-mRNA-1
chr6_4 CDS 80708289 80708362 80708289 ID=Msa0999040-mRNA-1:cds;Parent=Msa0999040-mRNA-1
chr6_4 CDS 80708803 80708858 80708803 ID=Msa0999040-mRNA-1:cds;Parent=Msa0999040-mRNA-1
chr6_4 three_prime_UTR 80708859 80709091 80708859 ID=Msa0999040-mRNA-1:three_prime_utr;Parent=Msa0999040-mRNA-1
chr6_4 three_prime_UTR 80709134 80709259 80709134 ID=Msa0999040-mRNA-1:three_prime_utr;Parent=Msa0999040-mRNA-1
Gene Sequence

>Msa0999040

ATGGAACCAAGAGAAAGCAACAACATTAATAGTAACCAACAAGGTTGTGGACTAAAGGATTCTTCATGGTGTTGTCAATTCAAAAATGCATCAAATCCTTTGATGGCAAGATATGTCTATGGCTTGATTTTTCTAGCTGCTAATATGTTGGCATGGGCTACACGTGATGAACTTTCTAGTATTAGTGCATTGACTGAACTCAAGGGTTTTAAAGCATGCAAAATTGGAAAAGACTGTTTGGGAGCACATGGTGTTTTGAGAGTTAGCATGGGTTGCTTTCCAAATCCATGTGATGGTATTTGCAACAGGTTCATATTTTATCTGTTTGGTTGGGATAATTTTGATGTACATTTGGTATGCACCAATACCATCATGCCTCCTCAACATATTTTTCATCACTTGGACTTTAGTACTTCTCCAAATCATGACAAGTGTATCTCTTCACCCAAAAAACATATTTGTGCATGCAGTGAACCAGAAGGAGATCAATGCATCAGAACATCAGGCACTGTAACCAAAACAGACTGGCAAAACATCATTAGCTTTGTTATTGGAATACTAGCAATAGTTATTGCAACATTTTCAACAGGCATAGATTCTAAATGCTTTCAGCTAAGGAAGGGTGATAAACCAGCAGAAGAAGATGATGTTCCATATGGATATGGTTTTTTCCATTTTGTTTTTGCCACAGGAGCTATGTACTTTGCAATGCTATTGATTGGATGGAATACTCATCATTCAATGAGAAAATGGTCACTTGATGTGGGCTGGACCAGTGCTTGGGTCAGAATAGTAAATGAATGGTTGGCAGTCTGTGTATACTTATGGATGCTGATAGCTCCAATTGTATGGAAGGCAAGACAGACTGAATCTACATGA

Protein sequence

>Msa0999040

MEPRESNNINSNQQGCGLKDSSWCCQFKNASNPLMARYVYGLIFLAANMLAWATRDELSSISALTELKGFKACKIGKDCLGAHGVLRVSMGCFPNPCDGICNRFIFYLFGWDNFDVHLVCTNTIMPPQHIFHHLDFSTSPNHDKCISSPKKHICACSEPEGDQCIRTSGTVTKTDWQNIISFVIGILAIVIATFSTGIDSKCFQLRKGDKPAEEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHSMRKWSLDVGWTSAWVRIVNEWLAVCVYLWMLIAPIVWKARQTEST*