AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1364530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364530 MtrunA17_Chr8g0383351 95.745 235 9 1 1 235 1 234 2.83e-159 440
Msa1364530 MtrunA17_Chr3g0129361 59.514 247 57 11 2 235 4 220 1.15e-76 230
Msa1364530 MtrunA17_Chr8g0335811 58.696 138 46 3 85 222 89 215 3.34e-46 153
Msa1364530 MtrunA17_Chr5g0418781 67.073 82 26 1 136 217 100 180 1.41e-32 119
Msa1364530 MtrunA17_Chr1g0194481 66.234 77 25 1 141 217 139 214 5.27e-30 114
Msa1364530 MtrunA17_Chr7g0218081 46.923 130 60 4 104 232 356 477 4.82e-29 114
Msa1364530 MtrunA17_Chr7g0218081 59.649 57 22 1 161 217 228 283 1.97e-16 77.8
Msa1364530 MtrunA17_Chr4g0051881 69.444 72 21 1 146 217 164 234 6.22e-29 111
Msa1364530 MtrunA17_Chr2g0294231 67.568 74 23 1 144 217 187 259 7.28e-29 111
Msa1364530 MtrunA17_Chr5g0445311 54.444 90 36 2 141 230 345 429 9.09e-29 113
Msa1364530 MtrunA17_Chr5g0445311 53.125 64 26 2 161 221 200 262 3.96e-14 71.2
Msa1364530 MtrunA17_Chr7g0270191 56.566 99 39 3 119 217 107 201 9.23e-29 110
Msa1364530 MtrunA17_Chr3g0101131 62.338 77 28 1 141 217 396 471 9.91e-29 113
Msa1364530 MtrunA17_Chr3g0101131 56.140 57 24 1 161 217 243 298 7.03e-15 73.6
Msa1364530 MtrunA17_Chr3g0106491 62.025 79 29 1 139 217 344 421 1.00e-28 112
Msa1364530 MtrunA17_Chr3g0106491 31.579 152 90 4 69 217 113 253 9.25e-15 72.8
Msa1364530 MtrunA17_Chr7g0248721 56.180 89 34 3 132 217 110 196 2.52e-28 107
Msa1364530 MtrunA17_Chr5g0432161 63.636 77 27 1 141 217 402 477 3.55e-28 111
Msa1364530 MtrunA17_Chr5g0432161 56.140 57 24 1 161 217 244 299 1.18e-14 72.8
Msa1364530 MtrunA17_Chr4g0068541 66.216 74 24 1 144 217 192 264 1.12e-27 109
Msa1364530 MtrunA17_Chr5g0443131 65.278 72 24 1 146 217 143 213 2.42e-27 106
Msa1364530 MtrunA17_Chr4g0042831 41.538 130 63 2 113 233 221 346 3.31e-27 107
Msa1364530 MtrunA17_Chr4g0042831 54.386 57 26 0 161 217 145 201 2.01e-15 74.7
Msa1364530 MtrunA17_Chr5g0418191 54.444 90 36 2 141 230 301 385 6.97e-27 107
Msa1364530 MtrunA17_Chr5g0418191 45.745 94 44 4 143 232 134 224 1.85e-15 74.7
Msa1364530 MtrunA17_Chr3g0079691 54.444 90 36 2 141 230 476 560 1.00e-26 107
Msa1364530 MtrunA17_Chr3g0079691 56.140 57 24 1 161 217 280 335 3.49e-15 74.3
Msa1364530 MtrunA17_Chr7g0224801 62.857 70 25 1 148 217 81 149 1.21e-26 101
Msa1364530 MtrunA17_Chr8g0386241 40.000 115 63 2 125 234 63 176 1.85e-26 100
Msa1364530 MtrunA17_Chr1g0150801 55.814 86 37 1 132 217 74 158 2.21e-26 100
Msa1364530 MtrunA17_Chr4g0004911 57.500 80 33 1 138 217 314 392 3.66e-26 105
Msa1364530 MtrunA17_Chr4g0004911 52.632 57 27 0 161 217 184 240 3.37e-15 74.3
Msa1364530 MtrunA17_Chr7g0249311 52.381 84 39 1 134 217 366 448 2.01e-25 103
Msa1364530 MtrunA17_Chr7g0249311 55.172 58 25 1 161 218 179 235 5.46e-16 76.6
Msa1364530 MtrunA17_Chr7g0249301 54.762 84 37 1 134 217 266 348 5.53e-25 101
Msa1364530 MtrunA17_Chr7g0249301 53.226 62 28 1 160 221 61 121 2.81e-15 73.9
Msa1364530 MtrunA17_Chr7g0243891 57.143 77 32 1 141 217 355 430 1.02e-24 102
Msa1364530 MtrunA17_Chr7g0243891 54.386 57 25 1 161 217 216 271 2.27e-14 72.0
Msa1364530 MtrunA17_Chr3g0129321 58.442 77 30 2 146 221 104 179 7.64e-24 94.7
Msa1364530 MtrunA17_Chr1g0188941 46.739 92 48 1 126 217 17 107 8.13e-24 92.0
Msa1364530 MtrunA17_Chr7g0263531 57.534 73 30 1 145 217 346 417 3.79e-23 96.7
Msa1364530 MtrunA17_Chr7g0263531 57.143 56 23 1 162 217 190 244 1.07e-14 72.8
Msa1364530 MtrunA17_Chr1g0189391 43.519 108 46 2 140 232 62 169 1.35e-22 94.0
Msa1364530 MtrunA17_Chr7g0238921 42.424 99 57 0 119 217 82 180 1.87e-21 90.9
Msa1364530 MtrunA17_Chr8g0383251 53.521 71 32 1 147 217 95 164 3.85e-20 84.3
Msa1364530 MtrunA17_Chr5g0447701 50.667 75 36 1 145 219 237 310 2.68e-19 85.5
Msa1364530 MtrunA17_Chr2g0333851 47.436 78 39 2 142 217 149 226 4.74e-19 84.3
Msa1364530 MtrunA17_Chr1g0147881 38.095 126 66 4 99 218 201 320 5.60e-19 84.3
Msa1364530 MtrunA17_Chr6g0485431 47.945 73 36 2 146 217 140 211 5.84e-19 84.3
Msa1364530 MtrunA17_Chr4g0074001 48.052 77 39 1 141 217 340 415 1.99e-18 83.6
Msa1364530 MtrunA17_Chr3g0139021 46.429 84 40 3 135 217 292 371 2.23e-18 83.2
Msa1364530 MtrunA17_Chr4g0053281 43.678 87 44 2 133 218 242 324 2.73e-18 82.4
Msa1364530 MtrunA17_Chr2g0322391 43.902 82 44 2 138 218 327 407 2.79e-18 83.2
Msa1364530 MtrunA17_Chr5g0401821 43.820 89 45 2 133 220 175 259 3.68e-18 80.9
Msa1364530 MtrunA17_Chr4g0060271 46.753 77 39 2 143 218 238 313 1.84e-17 80.9
Msa1364530 MtrunA17_Chr7g0228941 50.000 66 32 1 158 222 49 114 5.65e-17 74.7
Msa1364530 MtrunA17_Chr4g0075201 47.368 76 38 2 143 217 250 324 6.03e-17 79.3
Msa1364530 MtrunA17_Chr7g0270831 51.562 64 30 1 155 217 210 273 8.37e-17 78.6
Msa1364530 MtrunA17_Chr2g0288871 46.053 76 39 2 143 217 288 362 1.29e-16 78.6
Msa1364530 MtrunA17_Chr3g0099641 44.156 77 41 2 143 218 234 309 1.75e-16 77.8
Msa1364530 MtrunA17_Chr4g0071521 39.080 87 48 2 133 218 221 303 2.20e-16 76.6
Msa1364530 MtrunA17_Chr1g0150281 52.632 57 26 1 162 217 141 197 3.04e-16 75.9
Msa1364530 MtrunA17_Chr7g0216891 52.381 63 29 1 156 217 214 276 5.10e-16 76.6
Msa1364530 MtrunA17_Chr3g0136961 50.000 60 29 1 160 218 137 196 7.89e-16 75.1
Msa1364530 MtrunA17_Chr1g0184691 38.824 85 47 2 135 218 271 351 1.67e-15 74.7
Msa1364530 MtrunA17_Chr4g0025061 45.349 86 44 3 147 230 347 431 1.82e-15 75.1
Msa1364530 MtrunA17_Chr8g0387981 47.945 73 34 2 161 229 132 204 2.97e-15 73.9
Msa1364530 MtrunA17_Chr3g0126391 53.333 60 25 1 160 216 132 191 3.42e-15 73.6
Msa1364530 MtrunA17_Chr2g0302391 36.752 117 69 4 102 217 156 268 6.44e-15 73.2
Msa1364530 MtrunA17_Chr1g0150271 43.077 65 36 1 159 222 99 163 7.27e-15 71.6
Msa1364530 MtrunA17_Chr4g0001361 48.333 60 30 1 159 217 160 219 8.13e-15 72.4
Msa1364530 MtrunA17_Chr4g0051181 51.667 60 28 1 159 217 241 300 1.51e-14 72.4
Msa1364530 MtrunA17_Chr8g0348311 37.374 99 52 3 123 217 120 212 1.83e-14 71.6
Msa1364530 MtrunA17_Chr2g0293481 33.333 126 78 3 97 217 200 324 3.04e-14 71.2
Msa1364530 MtrunA17_Chr7g0244981 50.847 59 26 1 161 216 122 180 3.17e-14 70.5
Msa1364530 MtrunA17_Chr2g0315381 50.820 61 27 1 159 216 142 202 5.83e-14 69.7
Msa1364530 MtrunA17_Chr5g0432071 44.737 76 38 3 161 235 104 176 6.61e-14 68.2
Msa1364530 MtrunA17_Chr2g0315361 46.667 60 29 1 159 215 146 205 2.39e-13 68.2
Msa1364530 MtrunA17_Chr7g0244971 40.476 84 40 3 143 216 98 181 2.58e-13 67.8
Msa1364530 MtrunA17_Chr7g0275531 47.143 70 32 2 160 224 117 186 3.70e-13 67.8
Msa1364530 MtrunA17_Chr8g0379461 48.276 58 29 1 162 218 77 134 4.81e-13 66.6
Msa1364530 MtrunA17_Chr5g0447711 42.667 75 42 1 145 219 215 288 5.22e-13 67.0
Msa1364530 MtrunA17_Chr4g0025051 45.946 74 38 2 159 230 333 406 7.41e-13 67.4
Msa1364530 MtrunA17_Chr8g0387501 47.692 65 32 2 155 217 122 186 9.36e-13 66.2
Msa1364530 MtrunA17_Chr2g0284321 46.552 58 30 1 162 218 36 93 1.04e-12 65.1
Msa1364530 MtrunA17_Chr2g0289181 46.552 58 30 1 162 218 15 72 1.37e-12 65.1
Msa1364530 MtrunA17_Chr8g0334541 45.763 59 29 1 161 216 103 161 1.43e-12 65.5
Msa1364530 MtrunA17_Chr8g0347251 35.714 126 72 3 107 229 88 207 1.71e-12 65.9
Msa1364530 MtrunA17_Chr7g0248691 36.842 95 53 2 124 217 123 211 2.34e-12 65.5
Msa1364530 MtrunA17_Chr8g0350621 44.828 58 29 1 161 215 111 168 2.46e-12 64.7
Msa1364530 MtrunA17_Chr7g0270051 49.123 57 28 1 162 217 54 110 6.85e-12 63.5
Msa1364530 MtrunA17_Chr2g0315371 43.333 60 31 1 159 215 139 198 1.38e-11 62.8
Msa1364530 MtrunA17_Chr2g0319961 46.552 58 30 1 162 218 81 138 1.95e-11 62.0
Msa1364530 MtrunA17_Chr3g0128671 42.424 66 30 2 162 219 128 193 4.19e-11 61.6
Msa1364530 MtrunA17_Chr1g0202461 44.828 58 31 1 162 218 262 319 7.63e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364530 AT4G39410.1 72.000 125 23 3 122 235 181 304 8.22e-59 188
Msa1364530 AT2G44745.1 65.600 125 39 3 101 222 83 206 1.13e-47 157
Msa1364530 AT1G69310.4 65.060 83 28 1 135 217 122 203 2.40e-33 122
Msa1364530 AT1G69310.2 65.060 83 28 1 135 217 122 203 2.40e-33 122
Msa1364530 AT1G69310.1 65.060 83 28 1 135 217 122 203 2.40e-33 122
Msa1364530 AT1G64000.1 63.415 82 29 1 136 217 90 170 2.21e-30 112
Msa1364530 AT5G41570.1 61.176 85 32 1 133 217 71 154 2.37e-30 111
Msa1364530 AT2G46130.1 59.091 88 34 2 141 228 11 96 1.41e-29 107
Msa1364530 AT4G18170.1 65.854 82 26 2 141 221 153 233 1.88e-29 112
Msa1364530 AT5G49520.1 67.568 74 23 1 144 217 205 277 3.08e-29 113
Msa1364530 AT4G26640.5 55.435 92 33 2 133 217 171 261 5.56e-29 112
Msa1364530 AT4G26640.5 53.125 64 29 1 154 217 28 90 3.74e-14 71.2
Msa1364530 AT4G26640.6 55.435 92 33 2 133 217 171 261 5.56e-29 112
Msa1364530 AT4G26640.6 53.125 64 29 1 154 217 28 90 3.74e-14 71.2
Msa1364530 AT4G26640.4 55.435 92 33 2 133 217 171 261 5.56e-29 112
Msa1364530 AT4G26640.4 53.125 64 29 1 154 217 28 90 3.74e-14 71.2
Msa1364530 AT4G26640.3 55.435 92 33 2 133 217 171 261 5.56e-29 112
Msa1364530 AT4G26640.3 53.125 64 29 1 154 217 28 90 3.74e-14 71.2
Msa1364530 AT4G26640.7 49.541 109 43 3 133 234 307 410 6.18e-29 114
Msa1364530 AT4G26640.7 53.125 64 29 1 154 217 164 226 1.74e-14 72.4
Msa1364530 AT4G26640.1 49.541 109 43 3 133 234 275 378 7.81e-29 113
Msa1364530 AT4G26640.1 53.125 64 29 1 154 217 132 194 2.17e-14 72.4
Msa1364530 AT4G26640.2 49.541 109 43 3 133 234 347 450 8.69e-29 114
Msa1364530 AT4G26640.2 53.125 64 29 1 154 217 204 266 1.82e-14 72.4
Msa1364530 AT5G07100.1 50.000 110 44 2 108 217 192 290 2.93e-28 109
Msa1364530 AT5G07100.1 52.632 57 27 0 161 217 117 173 4.27e-14 70.5
Msa1364530 AT5G07100.2 50.000 110 44 2 108 217 99 197 4.33e-28 106
Msa1364530 AT5G07100.2 52.632 57 27 0 161 217 24 80 8.22e-14 68.6
Msa1364530 AT5G07100.4 50.000 110 44 2 108 217 99 197 4.33e-28 106
Msa1364530 AT5G07100.4 52.632 57 27 0 161 217 24 80 8.22e-14 68.6
Msa1364530 AT5G07100.5 50.000 110 44 2 108 217 99 197 4.33e-28 106
Msa1364530 AT5G07100.5 52.632 57 27 0 161 217 24 80 8.22e-14 68.6
Msa1364530 AT5G07100.3 50.000 110 44 2 108 217 99 197 4.33e-28 106
Msa1364530 AT5G07100.3 52.632 57 27 0 161 217 24 80 8.22e-14 68.6
Msa1364530 AT5G26170.1 64.000 75 26 1 147 221 100 173 5.05e-28 105
Msa1364530 AT1G69310.3 60.241 83 28 2 135 217 122 199 1.03e-27 107
Msa1364530 AT2G03340.1 43.307 127 67 2 104 230 359 480 1.38e-27 110
Msa1364530 AT2G03340.1 56.140 57 24 1 161 217 250 305 5.91e-14 70.9
Msa1364530 AT2G47260.1 60.465 86 32 2 132 217 147 230 1.91e-27 107
Msa1364530 AT1G29860.1 64.865 74 25 1 144 217 120 192 2.00e-27 106
Msa1364530 AT2G38470.1 63.636 77 27 1 141 217 343 418 2.68e-27 109
Msa1364530 AT2G38470.1 54.386 57 25 1 161 217 184 239 1.20e-13 70.1
Msa1364530 AT1G13960.1 61.039 77 29 1 141 217 390 465 3.79e-27 108
Msa1364530 AT1G13960.1 50.000 72 33 2 161 232 229 297 2.34e-15 75.1
Msa1364530 AT1G13960.2 61.039 77 29 1 141 217 237 312 5.70e-27 106
Msa1364530 AT1G13960.2 55.932 59 25 1 161 219 76 133 9.41e-15 72.8
Msa1364530 AT2G30250.1 63.636 77 27 1 141 217 309 384 6.13e-27 107
Msa1364530 AT2G30250.1 50.877 57 27 1 161 217 166 221 2.46e-11 63.2
Msa1364530 AT5G56270.1 61.039 77 29 1 141 217 468 543 1.01e-26 108
Msa1364530 AT5G56270.1 56.140 57 24 1 161 217 273 328 1.53e-15 75.9
Msa1364530 AT5G46350.1 65.278 72 24 1 146 217 169 239 1.54e-26 105
Msa1364530 AT3G01080.2 55.056 89 35 2 133 217 313 400 2.37e-26 106
Msa1364530 AT3G01080.2 56.140 57 24 1 161 217 205 260 2.34e-15 75.1
Msa1364530 AT3G01080.1 55.056 89 35 2 133 217 275 362 3.80e-26 105
Msa1364530 AT3G01080.1 56.140 57 24 1 161 217 167 222 4.29e-15 74.3
Msa1364530 AT5G13080.1 63.380 71 25 1 147 217 54 123 4.14e-26 99.4
Msa1364530 AT3G01970.1 54.444 90 37 2 147 233 52 140 5.07e-26 99.4
Msa1364530 AT4G26440.1 57.143 77 32 1 141 217 353 428 1.43e-24 102
Msa1364530 AT4G26440.1 56.897 58 24 1 161 218 178 234 6.47e-17 79.7
Msa1364530 AT2G46130.2 54.545 88 34 3 141 228 11 92 4.81e-24 92.8
Msa1364530 AT2G37260.3 62.500 64 24 0 154 217 262 325 7.63e-24 98.2
Msa1364530 AT2G37260.3 49.315 73 36 1 146 218 70 141 4.27e-14 70.9
Msa1364530 AT2G37260.2 62.500 64 24 0 154 217 260 323 7.90e-24 98.2
Msa1364530 AT2G37260.2 49.315 73 36 1 146 218 68 139 4.44e-14 70.9
Msa1364530 AT5G64810.1 39.844 128 70 2 90 217 46 166 9.20e-24 94.7
Msa1364530 AT2G37260.1 62.500 64 24 0 154 217 342 405 1.43e-23 98.2
Msa1364530 AT2G37260.1 49.315 73 36 1 146 218 150 221 4.86e-14 71.2
Msa1364530 AT3G62340.1 59.524 84 31 2 134 217 94 174 1.74e-23 95.9
Msa1364530 AT2G04880.2 32.727 220 106 9 5 217 155 339 1.43e-22 95.9
Msa1364530 AT2G04880.2 55.932 59 25 1 159 217 109 166 1.78e-14 72.4
Msa1364530 AT1G55600.1 45.882 85 46 0 133 217 279 363 1.30e-20 90.1
Msa1364530 AT2G04880.1 36.420 162 75 6 63 217 223 363 1.34e-20 90.1
Msa1364530 AT2G04880.1 55.932 59 25 1 159 217 109 166 1.91e-14 72.4
Msa1364530 AT2G21900.1 47.253 91 41 4 136 220 80 169 2.21e-19 83.2
Msa1364530 AT2G23320.1 47.126 87 41 2 133 218 216 298 8.94e-19 84.0
Msa1364530 AT4G31550.1 36.184 152 79 5 81 225 171 311 1.79e-18 83.2
Msa1364530 AT4G31550.2 35.526 152 79 5 81 225 171 310 1.83e-18 83.2
Msa1364530 AT5G43290.1 50.704 71 35 0 147 217 100 170 2.24e-18 82.0
Msa1364530 AT5G15130.2 48.052 77 38 2 143 218 168 243 4.08e-18 83.2
Msa1364530 AT5G15130.1 48.052 77 38 2 143 218 210 285 4.46e-18 83.2
Msa1364530 AT4G30935.1 54.839 62 28 0 156 217 326 387 7.81e-18 82.4
Msa1364530 AT2G25000.2 51.667 60 28 1 160 218 102 161 2.73e-17 78.2
Msa1364530 AT2G25000.4 51.667 60 28 1 160 218 102 161 2.73e-17 78.2
Msa1364530 AT4G31800.2 47.887 71 36 1 159 228 109 179 2.93e-17 78.6
Msa1364530 AT4G04450.2 35.772 123 66 2 96 217 145 255 2.99e-17 80.5
Msa1364530 AT2G25000.3 51.667 60 28 1 160 218 124 183 3.80e-17 78.2
Msa1364530 AT4G31800.1 51.667 60 28 1 159 217 174 233 5.42e-17 79.0
Msa1364530 AT2G25000.1 51.667 60 28 1 160 218 145 204 5.53e-17 78.2
Msa1364530 AT4G04450.1 35.772 123 66 2 96 217 239 349 8.39e-17 79.3
Msa1364530 AT2G30590.1 43.023 86 44 2 133 217 289 370 8.74e-17 79.0
Msa1364530 AT5G28650.1 41.379 87 46 2 133 218 238 320 9.22e-17 78.2
Msa1364530 AT1G80840.1 43.678 87 45 3 135 217 117 203 1.20e-16 77.8
Msa1364530 AT2G24570.1 41.509 106 52 3 113 217 204 300 2.82e-16 77.0
Msa1364530 AT1G62300.1 47.368 76 38 2 143 217 295 369 3.45e-16 77.4
Msa1364530 AT3G01080.3 56.140 57 24 1 161 217 205 260 5.53e-16 76.3
Msa1364530 AT4G22070.4 47.368 76 38 2 143 217 280 354 5.85e-16 77.0
Msa1364530 AT4G22070.3 47.368 76 38 2 143 217 280 354 5.85e-16 77.0
Msa1364530 AT4G22070.2 47.368 76 38 2 143 217 280 354 5.85e-16 77.0
Msa1364530 AT4G22070.1 47.368 76 38 2 143 217 280 354 5.85e-16 77.0
Msa1364530 AT3G04670.1 40.230 87 47 2 133 218 238 320 7.08e-16 75.9
Msa1364530 AT4G24240.1 40.230 87 47 2 133 218 257 339 1.02e-15 75.5
Msa1364530 AT4G01720.1 38.739 111 55 3 119 217 187 296 2.09e-15 75.1
Msa1364530 AT1G18860.1 51.667 60 28 1 159 217 237 296 6.40e-15 73.9
Msa1364530 AT4G01250.1 41.463 82 38 3 140 217 110 185 1.34e-14 72.0
Msa1364530 AT1G68150.1 39.216 102 53 3 121 217 195 292 1.74e-14 72.0
Msa1364530 AT1G66550.2 49.153 59 27 1 161 216 103 161 2.61e-14 70.5
Msa1364530 AT1G66550.1 49.153 59 27 1 161 216 108 166 3.63e-14 70.1
Msa1364530 AT1G66560.1 49.153 59 27 1 161 216 103 161 4.47e-14 69.7
Msa1364530 AT3G56400.1 34.737 95 53 2 143 228 96 190 5.28e-14 70.1
Msa1364530 AT2G34830.1 38.636 88 52 2 132 217 185 272 1.95e-13 69.3
Msa1364530 AT5G01900.1 35.366 82 50 1 138 216 87 168 2.07e-13 68.2
Msa1364530 AT2G34830.2 38.636 88 52 2 132 217 194 281 2.17e-13 69.3
Msa1364530 AT1G69810.2 44.156 77 40 3 143 217 128 203 3.27e-13 68.2
Msa1364530 AT1G29280.1 44.444 63 34 1 156 217 69 131 3.59e-13 67.4
Msa1364530 AT1G69810.1 44.156 77 40 3 143 217 186 261 3.94e-13 68.2
Msa1364530 AT1G30650.1 38.636 88 52 2 132 217 187 274 4.54e-13 68.2
Msa1364530 AT2G40740.1 29.787 188 112 7 37 215 54 230 4.79e-13 67.4
Msa1364530 AT2G40740.3 29.787 188 112 7 37 215 63 239 5.76e-13 67.4
Msa1364530 AT1G66600.1 47.458 59 28 1 160 215 102 160 1.46e-12 65.5
Msa1364530 AT4G12020.3 44.928 69 37 1 160 228 467 534 1.50e-12 67.0
Msa1364530 AT4G12020.10 44.928 69 37 1 160 228 467 534 1.53e-12 67.0
Msa1364530 AT5G52830.1 49.123 57 28 1 162 217 166 222 1.54e-12 66.2
Msa1364530 AT4G12020.6 44.928 69 37 1 160 228 467 534 1.61e-12 67.0
Msa1364530 AT4G12020.8 44.928 69 37 1 160 228 467 534 1.61e-12 67.0
Msa1364530 AT4G12020.4 44.928 69 37 1 160 228 467 534 1.62e-12 67.0
Msa1364530 AT4G12020.2 44.928 69 37 1 160 228 467 534 1.62e-12 67.0
Msa1364530 AT4G12020.5 44.928 69 37 1 160 228 400 467 1.64e-12 67.0
Msa1364530 AT4G12020.7 44.928 69 37 1 160 228 467 534 1.66e-12 67.0
Msa1364530 AT4G12020.1 44.928 69 37 1 160 228 467 534 1.77e-12 67.0
Msa1364530 AT4G12020.9 44.928 69 37 1 160 228 467 534 1.77e-12 67.0
Msa1364530 AT4G23550.1 44.262 61 33 1 158 217 137 197 2.07e-12 65.9
Msa1364530 AT4G12020.11 44.928 69 37 1 160 228 467 534 2.34e-12 66.6
Msa1364530 AT5G22570.1 46.552 58 28 1 162 216 111 168 1.19e-11 63.5
Msa1364530 AT1G80590.1 44.828 58 29 1 162 216 86 143 1.59e-11 62.4
Msa1364530 AT2G46400.1 36.471 85 51 1 134 215 77 161 2.20e-11 62.8
Msa1364530 AT2G40750.1 41.667 72 38 2 161 229 152 222 4.85e-11 62.0
Msa1364530 AT4G11070.2 44.286 70 36 1 161 227 109 178 5.42e-11 61.6
Msa1364530 AT4G11070.1 44.286 70 36 1 161 227 141 210 6.46e-11 61.6
Msa1364530 AT5G45050.4 47.368 57 29 1 162 217 1042 1098 8.36e-11 62.0
Msa1364530 AT5G45050.1 47.368 57 29 1 162 217 1181 1237 9.13e-11 62.0
Msa1364530 AT5G24110.1 38.554 83 39 2 159 229 111 193 9.62e-11 60.8

Find 74 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCTAACTTTCCCTTCTT+TGG 0.155148 tig0018152:+86792 Msa1364530:CDS
ATATATATATAGGGCAATAT+TGG 0.271320 tig0018152:+87307 Msa1364530:intron
GATCATCATGATAATCATTT+GGG 0.306049 tig0018152:+87383 Msa1364530:CDS
CTCAATCTGACAATTTCTTA+TGG 0.312969 tig0018152:+88631 Msa1364530:CDS
CTCCCTTTCTTCTTTATATG+AGG 0.313163 tig0018152:-86658 None:intergenic
AACCTAACTTTCCCTTCTTT+GGG 0.323054 tig0018152:+86793 Msa1364530:CDS
TTGAGGATTGGTTGTGAGTA+GGG 0.323819 tig0018152:-86899 None:intergenic
GAAGGGAAAGTTAGGTTTGT+TGG 0.351164 tig0018152:-86787 None:intergenic
CAAGGCAAAACTATAAAGTA+TGG 0.372064 tig0018152:-89003 None:intergenic
AGATCATCATGATAATCATT+TGG 0.374995 tig0018152:+87382 Msa1364530:CDS
TCGAGAGTCTTCAAGATCAT+TGG 0.379250 tig0018152:-88607 None:intergenic
GAATACCTCACTTCTAGCTT+TGG 0.383644 tig0018152:+86931 Msa1364530:CDS
TTTGAGGATTGGTTGTGAGT+AGG 0.394005 tig0018152:-86900 None:intergenic
GGTTACAAGTGGAGGAAGTA+TGG 0.398456 tig0018152:+87512 Msa1364530:CDS
AAGGGAAAGTTAGGTTTGTT+GGG 0.400880 tig0018152:-86786 None:intergenic
AATAATAGTGGTAAAAGAAA+TGG 0.401015 tig0018152:+87356 Msa1364530:CDS
TATGTGGTTATTACCATCCT+TGG 0.403815 tig0018152:-88558 None:intergenic
TATATATATAGGGCAATATT+GGG 0.416994 tig0018152:+87308 Msa1364530:intron
CATCATATGGTGTGCTTGGA+AGG 0.421273 tig0018152:-88824 None:intergenic
TCTACTAATATTAAAGGTCT+AGG 0.424898 tig0018152:+88714 Msa1364530:three_prime_UTR
AACCCAAAGAAGGGAAAGTT+AGG 0.429367 tig0018152:-86795 None:intergenic
CCAAACACAGAAAATTGAAT+AGG 0.430088 tig0018152:-89026 None:intergenic
GGATCAGATTCCCACACAAA+TGG 0.430482 tig0018152:+86750 Msa1364530:CDS
GATCAGATTCCCACACAAAT+GGG 0.432708 tig0018152:+86751 Msa1364530:CDS
CAGCCATCATATGGTGTGCT+TGG 0.459290 tig0018152:-88828 None:intergenic
ACTCCTCATATAAAGAAGAA+AGG 0.464551 tig0018152:+86655 Msa1364530:five_prime_UTR
AGTAATTGCATGAATAATAG+TGG 0.478312 tig0018152:+87344 Msa1364530:CDS
CAACAACTTATTTGAGGAGG+AGG 0.479257 tig0018152:+86729 Msa1364530:CDS
GATTGATTGCAACCCAAAGA+AGG 0.483315 tig0018152:-86805 None:intergenic
CGTTGACAACAACTTATTTG+AGG 0.483533 tig0018152:+86723 Msa1364530:CDS
CTCCTCATATAAAGAAGAAA+GGG 0.485795 tig0018152:+86656 Msa1364530:five_prime_UTR
CATGAAAATGAAGAAAATGA+AGG 0.488233 tig0018152:+87418 Msa1364530:CDS
TACCTCACTTCTAGCTTTGG+AGG 0.489395 tig0018152:+86934 Msa1364530:CDS
TCTAGAGCTAGCAAGAGGTT+AGG 0.492548 tig0018152:-86606 None:intergenic
AAAGTTAGGTTTGTTGGGAA+AGG 0.496923 tig0018152:-86781 None:intergenic
AGATGTAAGTGAAGAAGCTA+TGG 0.510048 tig0018152:-86845 None:intergenic
TACATGTCTTCCTTCATATG+TGG 0.519036 tig0018152:-88574 None:intergenic
ATGGTAATAACCACATATGA+AGG 0.520270 tig0018152:+88564 Msa1364530:CDS
CAATGGATCTATGCAAGGAT+AGG 0.526046 tig0018152:-86969 None:intergenic
AAGATCAAATAAGTACAGAA+TGG 0.531246 tig0018152:+88757 Msa1364530:three_prime_UTR
ATGAAAATGAAGAAAATGAA+GGG 0.532779 tig0018152:+87419 Msa1364530:CDS
CTTCCAAGCACACCATATGA+TGG 0.538420 tig0018152:+88825 Msa1364530:three_prime_UTR
TGAAGAAGCTATGGAACTGA+AGG 0.544848 tig0018152:-86836 None:intergenic
GTCTCACCATGGATTTACAA+TGG 0.548992 tig0018152:-86986 None:intergenic
CACAGAAAATTGAATAGGCA+AGG 0.549519 tig0018152:-89021 None:intergenic
TATGGTGTGCTTGGAAGGGA+TGG 0.557396 tig0018152:-88819 None:intergenic
CTTGGTGTTCTCTAGATGCA+TGG 0.560309 tig0018152:+88873 Msa1364530:three_prime_UTR
AGGAATGAACCCCATTTGTG+TGG 0.571470 tig0018152:-86761 None:intergenic
GAAAGAAAGTGAGAGAGCCT+AGG 0.575300 tig0018152:+87444 Msa1364530:CDS
GATCTATGCAAGGATAGGAA+TGG 0.576173 tig0018152:-86964 None:intergenic
ATTGATTGCAACCCAAAGAA+GGG 0.576930 tig0018152:-86804 None:intergenic
ATAGATCCATTGTAAATCCA+TGG 0.578759 tig0018152:+86980 Msa1364530:CDS
GAGTCTTCAAGATCATTGGA+TGG 0.596175 tig0018152:-88603 None:intergenic
GAGTACTGATGTGGATGTGT+TGG 0.603265 tig0018152:+87484 Msa1364530:CDS
TAAAGAACACACAACATCCC+AGG 0.608791 tig0018152:+87546 Msa1364530:CDS
TGACAACAACTTATTTGAGG+AGG 0.610316 tig0018152:+86726 Msa1364530:CDS
ATTTACAATGGATCTATGCA+AGG 0.612859 tig0018152:-86974 None:intergenic
GGAATGAACCCCATTTGTGT+GGG 0.612916 tig0018152:-86760 None:intergenic
AGCGCTTAGCTGAAGATCCA+AGG 0.615258 tig0018152:+88541 Msa1364530:CDS
ATCATCATGATAATCATTTG+GGG 0.627967 tig0018152:+87384 Msa1364530:CDS
GACAATTCTCTTGTGTGCAA+CGG 0.637189 tig0018152:-88500 None:intergenic
AGCTTTCTAGAGCTAGCAAG+AGG 0.638887 tig0018152:-86611 None:intergenic
TGGATGACGGTTACAAGTGG+AGG 0.645071 tig0018152:+87504 Msa1364530:CDS
ATCATATGGTGTGCTTGGAA+GGG 0.650374 tig0018152:-88823 None:intergenic
CTTAGCTGAAGATCCAAGGA+TGG 0.650835 tig0018152:+88545 Msa1364530:CDS
TCATCATGATAATCATTTGG+GGG 0.652014 tig0018152:+87385 Msa1364530:CDS
GATGTGGATGTGTTGGATGA+CGG 0.657235 tig0018152:+87491 Msa1364530:CDS
TGTTGGATGACGGTTACAAG+TGG 0.657327 tig0018152:+87501 Msa1364530:CDS
ATATATAGGGCAATATTGGG+AGG 0.658760 tig0018152:+87311 Msa1364530:intron
AATGTCTTGAAGCAAAACCT+AGG 0.659684 tig0018152:-87461 None:intergenic
ATCAGATTCCCACACAAATG+GGG 0.662202 tig0018152:+86752 Msa1364530:CDS
TTGTCGTGTAAAGAAACGTG+TGG 0.671845 tig0018152:+88518 Msa1364530:CDS
CAAGACATTGAGTACTGATG+TGG 0.685676 tig0018152:+87475 Msa1364530:CDS
TTCCTCCAAAGCTAGAAGTG+AGG 0.687037 tig0018152:-86936 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTCATATATATATATAT+AGG + tig0018152:87297-87316 Msa1364530:intron 10.0%
!! GTTTCATATATATATATATA+GGG + tig0018152:87298-87317 Msa1364530:intron 10.0%
!! TGTTTCATATATATATATAT+AGG + tig0018152:87297-87316 Msa1364530:intron 10.0%
!! GTTTCATATATATATATATA+GGG + tig0018152:87298-87317 Msa1364530:intron 10.0%
!! ATAAAAATGAAAATTAGAGA+CGG + tig0018152:87062-87081 Msa1364530:intron 15.0%
!! TATATCAACTAAAAATTCAA+GGG + tig0018152:87569-87588 Msa1364530:intron 15.0%
!! GATGAAAAAAATAATAATGA+AGG - tig0018152:88109-88128 None:intergenic 15.0%
!!! ATGTTTTCTACTAATATTAA+AGG + tig0018152:88708-88727 Msa1364530:three_prime_UTR 15.0%
!! ATAAAAATGAAAATTAGAGA+CGG + tig0018152:87062-87081 Msa1364530:intron 15.0%
!! TATATCAACTAAAAATTCAA+GGG + tig0018152:87569-87588 Msa1364530:intron 15.0%
!! GATGAAAAAAATAATAATGA+AGG - tig0018152:88109-88128 None:intergenic 15.0%
!!! ATGTTTTCTACTAATATTAA+AGG + tig0018152:88708-88727 Msa1364530:three_prime_UTR 15.0%
!! ACATCAAATTTGGTAAAATA+TGG - tig0018152:87107-87126 None:intergenic 20.0%
!! AAAATAAATTGAAGTAGCAA+CGG - tig0018152:87189-87208 None:intergenic 20.0%
!! ATATATATATAGGGCAATAT+TGG + tig0018152:87307-87326 Msa1364530:intron 20.0%
!! TATATATATAGGGCAATATT+GGG + tig0018152:87308-87327 Msa1364530:intron 20.0%
!! AATAATAGTGGTAAAAGAAA+TGG + tig0018152:87356-87375 Msa1364530:CDS 20.0%
!! ATGAAAATGAAGAAAATGAA+GGG + tig0018152:87419-87438 Msa1364530:CDS 20.0%
!!! AATTTTTAGTTGATATACCT+GGG - tig0018152:87566-87585 None:intergenic 20.0%
!! GTATATCAACTAAAAATTCA+AGG + tig0018152:87568-87587 Msa1364530:intron 20.0%
!! AATAATTGTCACATTTCATT+TGG + tig0018152:87637-87656 Msa1364530:intron 20.0%
!! AATAATAATGAAGGAAAGAA+GGG - tig0018152:88100-88119 None:intergenic 20.0%
!! AAATAATAATGAAGGAAAGA+AGG - tig0018152:88101-88120 None:intergenic 20.0%
!! ATATACTCTATAACATTTGA+GGG - tig0018152:88298-88317 None:intergenic 20.0%
!! TATATACTCTATAACATTTG+AGG - tig0018152:88299-88318 None:intergenic 20.0%
!!! ATTAATTCTTTGTGTTTTGA+AGG + tig0018152:88384-88403 Msa1364530:intron 20.0%
!!! GTTTTTAACGTACTTTATTT+TGG + tig0018152:88411-88430 Msa1364530:intron 20.0%
!! ATTATATGAGACAATTAACT+TGG - tig0018152:88452-88471 None:intergenic 20.0%
!! GTGAAATTGAAAAATGTATT+TGG + tig0018152:88781-88800 Msa1364530:three_prime_UTR 20.0%
!!! TTCAAGTTTTTATTTAGTCT+TGG + tig0018152:88855-88874 Msa1364530:three_prime_UTR 20.0%
!! ACATCAAATTTGGTAAAATA+TGG - tig0018152:87107-87126 None:intergenic 20.0%
!! AAAATAAATTGAAGTAGCAA+CGG - tig0018152:87189-87208 None:intergenic 20.0%
!! ATATATATATAGGGCAATAT+TGG + tig0018152:87307-87326 Msa1364530:intron 20.0%
!! TATATATATAGGGCAATATT+GGG + tig0018152:87308-87327 Msa1364530:intron 20.0%
!! AATAATAGTGGTAAAAGAAA+TGG + tig0018152:87356-87375 Msa1364530:CDS 20.0%
!! ATGAAAATGAAGAAAATGAA+GGG + tig0018152:87419-87438 Msa1364530:CDS 20.0%
!!! AATTTTTAGTTGATATACCT+GGG - tig0018152:87566-87585 None:intergenic 20.0%
!! GTATATCAACTAAAAATTCA+AGG + tig0018152:87568-87587 Msa1364530:intron 20.0%
!! AATAATTGTCACATTTCATT+TGG + tig0018152:87637-87656 Msa1364530:intron 20.0%
!! AATAATAATGAAGGAAAGAA+GGG - tig0018152:88100-88119 None:intergenic 20.0%
!! AAATAATAATGAAGGAAAGA+AGG - tig0018152:88101-88120 None:intergenic 20.0%
!! ATATACTCTATAACATTTGA+GGG - tig0018152:88298-88317 None:intergenic 20.0%
!! TATATACTCTATAACATTTG+AGG - tig0018152:88299-88318 None:intergenic 20.0%
!!! ATTAATTCTTTGTGTTTTGA+AGG + tig0018152:88384-88403 Msa1364530:intron 20.0%
!!! GTTTTTAACGTACTTTATTT+TGG + tig0018152:88411-88430 Msa1364530:intron 20.0%
!! ATTATATGAGACAATTAACT+TGG - tig0018152:88452-88471 None:intergenic 20.0%
!! GTGAAATTGAAAAATGTATT+TGG + tig0018152:88781-88800 Msa1364530:three_prime_UTR 20.0%
!!! TTCAAGTTTTTATTTAGTCT+TGG + tig0018152:88855-88874 Msa1364530:three_prime_UTR 20.0%
!!! TTCTTTTGATTTTTGAGGAT+TGG - tig0018152:86914-86933 None:intergenic 25.0%
!!! AGGTATTCTTTTGATTTTTG+AGG - tig0018152:86919-86938 None:intergenic 25.0%
! GAGACGGAAAAATTAATATT+TGG + tig0018152:87078-87097 Msa1364530:intron 25.0%
! AGTAATTGCATGAATAATAG+TGG + tig0018152:87344-87363 Msa1364530:CDS 25.0%
! AGATCATCATGATAATCATT+TGG + tig0018152:87382-87401 Msa1364530:CDS 25.0%
! GATCATCATGATAATCATTT+GGG + tig0018152:87383-87402 Msa1364530:CDS 25.0%
! ATCATCATGATAATCATTTG+GGG + tig0018152:87384-87403 Msa1364530:CDS 25.0%
!! CTTCATTTTCTTCATTTTCA+TGG - tig0018152:87420-87439 None:intergenic 25.0%
! CATGAAAATGAAGAAAATGA+AGG + tig0018152:87418-87437 Msa1364530:CDS 25.0%
!!! GAATTTTTAGTTGATATACC+TGG - tig0018152:87567-87586 None:intergenic 25.0%
! TACTGTAATATTTAGAGGTA+CGG - tig0018152:87734-87753 None:intergenic 25.0%
! ATGGATACTGTAATATTTAG+AGG - tig0018152:87739-87758 None:intergenic 25.0%
! ATTACAGTATCCATGAAAAA+TGG + tig0018152:87745-87764 Msa1364530:intron 25.0%
! ATGGTCAAATGTAGTTATTA+TGG + tig0018152:87764-87783 Msa1364530:intron 25.0%
! TGGTCAAATGTAGTTATTAT+GGG + tig0018152:87765-87784 Msa1364530:intron 25.0%
!!! ACTGATTAGCTTTAATTTAC+TGG + tig0018152:88132-88151 Msa1364530:intron 25.0%
!! ATATGCAAAAGAAACTTGTT+CGG + tig0018152:88225-88244 Msa1364530:intron 25.0%
! TCTACTAATATTAAAGGTCT+AGG + tig0018152:88714-88733 Msa1364530:three_prime_UTR 25.0%
! AAGATCAAATAAGTACAGAA+TGG + tig0018152:88757-88776 Msa1364530:three_prime_UTR 25.0%
!!! TTCTTTTGATTTTTGAGGAT+TGG - tig0018152:86914-86933 None:intergenic 25.0%
!!! AGGTATTCTTTTGATTTTTG+AGG - tig0018152:86919-86938 None:intergenic 25.0%
! GAGACGGAAAAATTAATATT+TGG + tig0018152:87078-87097 Msa1364530:intron 25.0%
! AGTAATTGCATGAATAATAG+TGG + tig0018152:87344-87363 Msa1364530:CDS 25.0%
! AGATCATCATGATAATCATT+TGG + tig0018152:87382-87401 Msa1364530:CDS 25.0%
! GATCATCATGATAATCATTT+GGG + tig0018152:87383-87402 Msa1364530:CDS 25.0%
! ATCATCATGATAATCATTTG+GGG + tig0018152:87384-87403 Msa1364530:CDS 25.0%
!! CTTCATTTTCTTCATTTTCA+TGG - tig0018152:87420-87439 None:intergenic 25.0%
! CATGAAAATGAAGAAAATGA+AGG + tig0018152:87418-87437 Msa1364530:CDS 25.0%
!!! GAATTTTTAGTTGATATACC+TGG - tig0018152:87567-87586 None:intergenic 25.0%
! TACTGTAATATTTAGAGGTA+CGG - tig0018152:87734-87753 None:intergenic 25.0%
! ATGGATACTGTAATATTTAG+AGG - tig0018152:87739-87758 None:intergenic 25.0%
! ATTACAGTATCCATGAAAAA+TGG + tig0018152:87745-87764 Msa1364530:intron 25.0%
! ATGGTCAAATGTAGTTATTA+TGG + tig0018152:87764-87783 Msa1364530:intron 25.0%
! TGGTCAAATGTAGTTATTAT+GGG + tig0018152:87765-87784 Msa1364530:intron 25.0%
!!! ACTGATTAGCTTTAATTTAC+TGG + tig0018152:88132-88151 Msa1364530:intron 25.0%
!! ATATGCAAAAGAAACTTGTT+CGG + tig0018152:88225-88244 Msa1364530:intron 25.0%
! TCTACTAATATTAAAGGTCT+AGG + tig0018152:88714-88733 Msa1364530:three_prime_UTR 25.0%
! AAGATCAAATAAGTACAGAA+TGG + tig0018152:88757-88776 Msa1364530:three_prime_UTR 25.0%
GAGTTTCTCAATGAAAAAGT+TGG - tig0018152:86639-86658 None:intergenic 30.0%
ACTCCTCATATAAAGAAGAA+AGG + tig0018152:86655-86674 Msa1364530:five_prime_UTR 30.0%
CTCCTCATATAAAGAAGAAA+GGG + tig0018152:86656-86675 Msa1364530:five_prime_UTR 30.0%
ATTTACAATGGATCTATGCA+AGG - tig0018152:86977-86996 None:intergenic 30.0%
ATAGATCCATTGTAAATCCA+TGG + tig0018152:86980-86999 Msa1364530:CDS 30.0%
CTAATGTAATCTCTAAGTGT+TGG - tig0018152:87132-87151 None:intergenic 30.0%
GCTATATATAGATTGTCTGA+CGG + tig0018152:87262-87281 Msa1364530:intron 30.0%
CTATATATAGATTGTCTGAC+GGG + tig0018152:87263-87282 Msa1364530:intron 30.0%
TCATCATGATAATCATTTGG+GGG + tig0018152:87385-87404 Msa1364530:CDS 30.0%
!! CTACATTTGACCATTTTTCA+TGG - tig0018152:87758-87777 None:intergenic 30.0%
GGTCAAATGTAGTTATTATG+GGG + tig0018152:87766-87785 Msa1364530:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG - tig0018152:88012-88031 None:intergenic 30.0%
!! TAGCTTTAATTTACTGGCTT+CGG + tig0018152:88138-88157 Msa1364530:intron 30.0%
AATAGCCATACATCACATAA+AGG - tig0018152:88363-88382 None:intergenic 30.0%
ATGGTAATAACCACATATGA+AGG + tig0018152:88564-88583 Msa1364530:CDS 30.0%
CTCAATCTGACAATTTCTTA+TGG + tig0018152:88631-88650 Msa1364530:CDS 30.0%
TTGAAAAATCAGCCATCATA+TGG - tig0018152:88840-88859 None:intergenic 30.0%
!! TTTTGATTGAAACACGATAC+TGG - tig0018152:88915-88934 None:intergenic 30.0%
CAAGGCAAAACTATAAAGTA+TGG - tig0018152:89006-89025 None:intergenic 30.0%
GAGTTTCTCAATGAAAAAGT+TGG - tig0018152:86639-86658 None:intergenic 30.0%
ACTCCTCATATAAAGAAGAA+AGG + tig0018152:86655-86674 Msa1364530:five_prime_UTR 30.0%
CTCCTCATATAAAGAAGAAA+GGG + tig0018152:86656-86675 Msa1364530:five_prime_UTR 30.0%
ATTTACAATGGATCTATGCA+AGG - tig0018152:86977-86996 None:intergenic 30.0%
ATAGATCCATTGTAAATCCA+TGG + tig0018152:86980-86999 Msa1364530:CDS 30.0%
CTAATGTAATCTCTAAGTGT+TGG - tig0018152:87132-87151 None:intergenic 30.0%
GCTATATATAGATTGTCTGA+CGG + tig0018152:87262-87281 Msa1364530:intron 30.0%
CTATATATAGATTGTCTGAC+GGG + tig0018152:87263-87282 Msa1364530:intron 30.0%
TCATCATGATAATCATTTGG+GGG + tig0018152:87385-87404 Msa1364530:CDS 30.0%
!! CTACATTTGACCATTTTTCA+TGG - tig0018152:87758-87777 None:intergenic 30.0%
GGTCAAATGTAGTTATTATG+GGG + tig0018152:87766-87785 Msa1364530:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG - tig0018152:88012-88031 None:intergenic 30.0%
!! TAGCTTTAATTTACTGGCTT+CGG + tig0018152:88138-88157 Msa1364530:intron 30.0%
AATAGCCATACATCACATAA+AGG - tig0018152:88363-88382 None:intergenic 30.0%
ATGGTAATAACCACATATGA+AGG + tig0018152:88564-88583 Msa1364530:CDS 30.0%
CTCAATCTGACAATTTCTTA+TGG + tig0018152:88631-88650 Msa1364530:CDS 30.0%
TTGAAAAATCAGCCATCATA+TGG - tig0018152:88840-88859 None:intergenic 30.0%
!! TTTTGATTGAAACACGATAC+TGG - tig0018152:88915-88934 None:intergenic 30.0%
CAAGGCAAAACTATAAAGTA+TGG - tig0018152:89006-89025 None:intergenic 30.0%
CTCCCTTTCTTCTTTATATG+AGG - tig0018152:86661-86680 None:intergenic 35.0%
CGTTGACAACAACTTATTTG+AGG + tig0018152:86723-86742 Msa1364530:CDS 35.0%
TGACAACAACTTATTTGAGG+AGG + tig0018152:86726-86745 Msa1364530:CDS 35.0%
!! AAAGTTAGGTTTGTTGGGAA+AGG - tig0018152:86784-86803 None:intergenic 35.0%
! AAGGGAAAGTTAGGTTTGTT+GGG - tig0018152:86789-86808 None:intergenic 35.0%
AAACCTAACTTTCCCTTCTT+TGG + tig0018152:86792-86811 Msa1364530:CDS 35.0%
AACCTAACTTTCCCTTCTTT+GGG + tig0018152:86793-86812 Msa1364530:CDS 35.0%
ATTGATTGCAACCCAAAGAA+GGG - tig0018152:86807-86826 None:intergenic 35.0%
AGATGTAAGTGAAGAAGCTA+TGG - tig0018152:86848-86867 None:intergenic 35.0%
!!! GAATTGTTTTTGTCTCACCA+TGG - tig0018152:87000-87019 None:intergenic 35.0%
! AGTGTTGGAGACATCAAATT+TGG - tig0018152:87117-87136 None:intergenic 35.0%
ATATATAGGGCAATATTGGG+AGG + tig0018152:87311-87330 Msa1364530:intron 35.0%
AATGTCTTGAAGCAAAACCT+AGG - tig0018152:87464-87483 None:intergenic 35.0%
CAAATGTAGTTATTATGGGG+TGG + tig0018152:87769-87788 Msa1364530:intron 35.0%
AGCATTGCTCATGTAAGTTT+GGG - tig0018152:87866-87885 None:intergenic 35.0%
TAGCATTGCTCATGTAAGTT+TGG - tig0018152:87867-87886 None:intergenic 35.0%
GGCAAATAGTGCATTGTAAT+TGG - tig0018152:87925-87944 None:intergenic 35.0%
GCACTATTTGCCACAATTTA+AGG + tig0018152:87933-87952 Msa1364530:intron 35.0%
CTATTTGCCACAATTTAAGG+AGG + tig0018152:87936-87955 Msa1364530:intron 35.0%
TGTGACTGAAAAATAGGAAG+TGG + tig0018152:87959-87978 Msa1364530:intron 35.0%
GAGAGAGAACATATGTAAGT+TGG - tig0018152:88066-88085 None:intergenic 35.0%
!! AGCTTTAATTTACTGGCTTC+GGG + tig0018152:88139-88158 Msa1364530:intron 35.0%
! GTTTCTTTTGCATATGCATG+TGG - tig0018152:88220-88239 None:intergenic 35.0%
TATGTGGTTATTACCATCCT+TGG - tig0018152:88561-88580 None:intergenic 35.0%
TACATGTCTTCCTTCATATG+TGG - tig0018152:88577-88596 None:intergenic 35.0%
CTCCCTTTCTTCTTTATATG+AGG - tig0018152:86661-86680 None:intergenic 35.0%
CGTTGACAACAACTTATTTG+AGG + tig0018152:86723-86742 Msa1364530:CDS 35.0%
TGACAACAACTTATTTGAGG+AGG + tig0018152:86726-86745 Msa1364530:CDS 35.0%
!! AAAGTTAGGTTTGTTGGGAA+AGG - tig0018152:86784-86803 None:intergenic 35.0%
! AAGGGAAAGTTAGGTTTGTT+GGG - tig0018152:86789-86808 None:intergenic 35.0%
AAACCTAACTTTCCCTTCTT+TGG + tig0018152:86792-86811 Msa1364530:CDS 35.0%
AACCTAACTTTCCCTTCTTT+GGG + tig0018152:86793-86812 Msa1364530:CDS 35.0%
ATTGATTGCAACCCAAAGAA+GGG - tig0018152:86807-86826 None:intergenic 35.0%
AGATGTAAGTGAAGAAGCTA+TGG - tig0018152:86848-86867 None:intergenic 35.0%
!!! GAATTGTTTTTGTCTCACCA+TGG - tig0018152:87000-87019 None:intergenic 35.0%
! AGTGTTGGAGACATCAAATT+TGG - tig0018152:87117-87136 None:intergenic 35.0%
ATATATAGGGCAATATTGGG+AGG + tig0018152:87311-87330 Msa1364530:intron 35.0%
AATGTCTTGAAGCAAAACCT+AGG - tig0018152:87464-87483 None:intergenic 35.0%
CAAATGTAGTTATTATGGGG+TGG + tig0018152:87769-87788 Msa1364530:intron 35.0%
AGCATTGCTCATGTAAGTTT+GGG - tig0018152:87866-87885 None:intergenic 35.0%
TAGCATTGCTCATGTAAGTT+TGG - tig0018152:87867-87886 None:intergenic 35.0%
GGCAAATAGTGCATTGTAAT+TGG - tig0018152:87925-87944 None:intergenic 35.0%
GCACTATTTGCCACAATTTA+AGG + tig0018152:87933-87952 Msa1364530:intron 35.0%
CTATTTGCCACAATTTAAGG+AGG + tig0018152:87936-87955 Msa1364530:intron 35.0%
TGTGACTGAAAAATAGGAAG+TGG + tig0018152:87959-87978 Msa1364530:intron 35.0%
GAGAGAGAACATATGTAAGT+TGG - tig0018152:88066-88085 None:intergenic 35.0%
!! AGCTTTAATTTACTGGCTTC+GGG + tig0018152:88139-88158 Msa1364530:intron 35.0%
! GTTTCTTTTGCATATGCATG+TGG - tig0018152:88220-88239 None:intergenic 35.0%
TATGTGGTTATTACCATCCT+TGG - tig0018152:88561-88580 None:intergenic 35.0%
TACATGTCTTCCTTCATATG+TGG - tig0018152:88577-88596 None:intergenic 35.0%
CAACAACTTATTTGAGGAGG+AGG + tig0018152:86729-86748 Msa1364530:CDS 40.0%
GATCAGATTCCCACACAAAT+GGG + tig0018152:86751-86770 Msa1364530:CDS 40.0%
ATCAGATTCCCACACAAATG+GGG + tig0018152:86752-86771 Msa1364530:CDS 40.0%
GAAGGGAAAGTTAGGTTTGT+TGG - tig0018152:86790-86809 None:intergenic 40.0%
AACCCAAAGAAGGGAAAGTT+AGG - tig0018152:86798-86817 None:intergenic 40.0%
GATTGATTGCAACCCAAAGA+AGG - tig0018152:86808-86827 None:intergenic 40.0%
TGAAGAAGCTATGGAACTGA+AGG - tig0018152:86839-86858 None:intergenic 40.0%
!! TTGAGGATTGGTTGTGAGTA+GGG - tig0018152:86902-86921 None:intergenic 40.0%
!! TTTGAGGATTGGTTGTGAGT+AGG - tig0018152:86903-86922 None:intergenic 40.0%
!! GAATACCTCACTTCTAGCTT+TGG + tig0018152:86931-86950 Msa1364530:CDS 40.0%
GATCTATGCAAGGATAGGAA+TGG - tig0018152:86967-86986 None:intergenic 40.0%
CAATGGATCTATGCAAGGAT+AGG - tig0018152:86972-86991 None:intergenic 40.0%
GTCTCACCATGGATTTACAA+TGG - tig0018152:86989-87008 None:intergenic 40.0%
!! CAAGACATTGAGTACTGATG+TGG + tig0018152:87475-87494 Msa1364530:CDS 40.0%
TAAAGAACACACAACATCCC+AGG + tig0018152:87546-87565 Msa1364530:CDS 40.0%
ATGTAGTTATTATGGGGTGG+AGG + tig0018152:87772-87791 Msa1364530:intron 40.0%
! GTTTGGGACACAATGAATCA+AGG - tig0018152:87850-87869 None:intergenic 40.0%
AGTCACACCTCCTTAAATTG+TGG - tig0018152:87946-87965 None:intergenic 40.0%
! AGGAGGTGTGACTGAAAAAT+AGG + tig0018152:87953-87972 Msa1364530:intron 40.0%
TAATGAAGGAAAGAAGGGTG+TGG - tig0018152:88095-88114 None:intergenic 40.0%
!! TTAATTTACTGGCTTCGGGA+AGG + tig0018152:88143-88162 Msa1364530:intron 40.0%
TTGCATATGCATGTGGTGAA+AGG - tig0018152:88213-88232 None:intergenic 40.0%
!! CACATGTGATCACTTTTCCT+AGG + tig0018152:88333-88352 Msa1364530:intron 40.0%
!! ATGTGATCACTTTTCCTAGG+TGG + tig0018152:88336-88355 Msa1364530:intron 40.0%
GTGGACCTTTATGTGATGTA+TGG + tig0018152:88355-88374 Msa1364530:intron 40.0%
GACAATTCTCTTGTGTGCAA+CGG - tig0018152:88503-88522 None:intergenic 40.0%
TTGTCGTGTAAAGAAACGTG+TGG + tig0018152:88518-88537 Msa1364530:CDS 40.0%
GAGTCTTCAAGATCATTGGA+TGG - tig0018152:88606-88625 None:intergenic 40.0%
TCGAGAGTCTTCAAGATCAT+TGG - tig0018152:88610-88629 None:intergenic 40.0%
ATCATATGGTGTGCTTGGAA+GGG - tig0018152:88826-88845 None:intergenic 40.0%
CAACAACTTATTTGAGGAGG+AGG + tig0018152:86729-86748 Msa1364530:CDS 40.0%
GATCAGATTCCCACACAAAT+GGG + tig0018152:86751-86770 Msa1364530:CDS 40.0%
ATCAGATTCCCACACAAATG+GGG + tig0018152:86752-86771 Msa1364530:CDS 40.0%
GAAGGGAAAGTTAGGTTTGT+TGG - tig0018152:86790-86809 None:intergenic 40.0%
AACCCAAAGAAGGGAAAGTT+AGG - tig0018152:86798-86817 None:intergenic 40.0%
GATTGATTGCAACCCAAAGA+AGG - tig0018152:86808-86827 None:intergenic 40.0%
TGAAGAAGCTATGGAACTGA+AGG - tig0018152:86839-86858 None:intergenic 40.0%
!! TTGAGGATTGGTTGTGAGTA+GGG - tig0018152:86902-86921 None:intergenic 40.0%
!! TTTGAGGATTGGTTGTGAGT+AGG - tig0018152:86903-86922 None:intergenic 40.0%
!! GAATACCTCACTTCTAGCTT+TGG + tig0018152:86931-86950 Msa1364530:CDS 40.0%
GATCTATGCAAGGATAGGAA+TGG - tig0018152:86967-86986 None:intergenic 40.0%
CAATGGATCTATGCAAGGAT+AGG - tig0018152:86972-86991 None:intergenic 40.0%
GTCTCACCATGGATTTACAA+TGG - tig0018152:86989-87008 None:intergenic 40.0%
!! CAAGACATTGAGTACTGATG+TGG + tig0018152:87475-87494 Msa1364530:CDS 40.0%
TAAAGAACACACAACATCCC+AGG + tig0018152:87546-87565 Msa1364530:CDS 40.0%
ATGTAGTTATTATGGGGTGG+AGG + tig0018152:87772-87791 Msa1364530:intron 40.0%
! GTTTGGGACACAATGAATCA+AGG - tig0018152:87850-87869 None:intergenic 40.0%
AGTCACACCTCCTTAAATTG+TGG - tig0018152:87946-87965 None:intergenic 40.0%
! AGGAGGTGTGACTGAAAAAT+AGG + tig0018152:87953-87972 Msa1364530:intron 40.0%
TAATGAAGGAAAGAAGGGTG+TGG - tig0018152:88095-88114 None:intergenic 40.0%
!! TTAATTTACTGGCTTCGGGA+AGG + tig0018152:88143-88162 Msa1364530:intron 40.0%
TTGCATATGCATGTGGTGAA+AGG - tig0018152:88213-88232 None:intergenic 40.0%
!! CACATGTGATCACTTTTCCT+AGG + tig0018152:88333-88352 Msa1364530:intron 40.0%
!! ATGTGATCACTTTTCCTAGG+TGG + tig0018152:88336-88355 Msa1364530:intron 40.0%
GTGGACCTTTATGTGATGTA+TGG + tig0018152:88355-88374 Msa1364530:intron 40.0%
GACAATTCTCTTGTGTGCAA+CGG - tig0018152:88503-88522 None:intergenic 40.0%
TTGTCGTGTAAAGAAACGTG+TGG + tig0018152:88518-88537 Msa1364530:CDS 40.0%
GAGTCTTCAAGATCATTGGA+TGG - tig0018152:88606-88625 None:intergenic 40.0%
TCGAGAGTCTTCAAGATCAT+TGG - tig0018152:88610-88629 None:intergenic 40.0%
ATCATATGGTGTGCTTGGAA+GGG - tig0018152:88826-88845 None:intergenic 40.0%
! TCTAGAGCTAGCAAGAGGTT+AGG - tig0018152:86609-86628 None:intergenic 45.0%
!! AGCTTTCTAGAGCTAGCAAG+AGG - tig0018152:86614-86633 None:intergenic 45.0%
GGATCAGATTCCCACACAAA+TGG + tig0018152:86750-86769 Msa1364530:CDS 45.0%
GGAATGAACCCCATTTGTGT+GGG - tig0018152:86763-86782 None:intergenic 45.0%
AGGAATGAACCCCATTTGTG+TGG - tig0018152:86764-86783 None:intergenic 45.0%
!! TACCTCACTTCTAGCTTTGG+AGG + tig0018152:86934-86953 Msa1364530:CDS 45.0%
TTCCTCCAAAGCTAGAAGTG+AGG - tig0018152:86939-86958 None:intergenic 45.0%
GAAAGAAAGTGAGAGAGCCT+AGG + tig0018152:87444-87463 Msa1364530:CDS 45.0%
!! GAGTACTGATGTGGATGTGT+TGG + tig0018152:87484-87503 Msa1364530:CDS 45.0%
GATGTGGATGTGTTGGATGA+CGG + tig0018152:87491-87510 Msa1364530:CDS 45.0%
! TGTTGGATGACGGTTACAAG+TGG + tig0018152:87501-87520 Msa1364530:CDS 45.0%
GGTTACAAGTGGAGGAAGTA+TGG + tig0018152:87512-87531 Msa1364530:CDS 45.0%
CATCACATAAAGGTCCACCT+AGG - tig0018152:88353-88372 None:intergenic 45.0%
CTTAGCTGAAGATCCAAGGA+TGG + tig0018152:88545-88564 Msa1364530:CDS 45.0%
CATCATATGGTGTGCTTGGA+AGG - tig0018152:88827-88846 None:intergenic 45.0%
CTTCCAAGCACACCATATGA+TGG + tig0018152:88825-88844 Msa1364530:three_prime_UTR 45.0%
!! CTTGGTGTTCTCTAGATGCA+TGG + tig0018152:88873-88892 Msa1364530:three_prime_UTR 45.0%
! TCTAGAGCTAGCAAGAGGTT+AGG - tig0018152:86609-86628 None:intergenic 45.0%
!! AGCTTTCTAGAGCTAGCAAG+AGG - tig0018152:86614-86633 None:intergenic 45.0%
GGATCAGATTCCCACACAAA+TGG + tig0018152:86750-86769 Msa1364530:CDS 45.0%
GGAATGAACCCCATTTGTGT+GGG - tig0018152:86763-86782 None:intergenic 45.0%
AGGAATGAACCCCATTTGTG+TGG - tig0018152:86764-86783 None:intergenic 45.0%
!! TACCTCACTTCTAGCTTTGG+AGG + tig0018152:86934-86953 Msa1364530:CDS 45.0%
TTCCTCCAAAGCTAGAAGTG+AGG - tig0018152:86939-86958 None:intergenic 45.0%
GAAAGAAAGTGAGAGAGCCT+AGG + tig0018152:87444-87463 Msa1364530:CDS 45.0%
!! GAGTACTGATGTGGATGTGT+TGG + tig0018152:87484-87503 Msa1364530:CDS 45.0%
GATGTGGATGTGTTGGATGA+CGG + tig0018152:87491-87510 Msa1364530:CDS 45.0%
! TGTTGGATGACGGTTACAAG+TGG + tig0018152:87501-87520 Msa1364530:CDS 45.0%
GGTTACAAGTGGAGGAAGTA+TGG + tig0018152:87512-87531 Msa1364530:CDS 45.0%
CATCACATAAAGGTCCACCT+AGG - tig0018152:88353-88372 None:intergenic 45.0%
CTTAGCTGAAGATCCAAGGA+TGG + tig0018152:88545-88564 Msa1364530:CDS 45.0%
CATCATATGGTGTGCTTGGA+AGG - tig0018152:88827-88846 None:intergenic 45.0%
CTTCCAAGCACACCATATGA+TGG + tig0018152:88825-88844 Msa1364530:three_prime_UTR 45.0%
!! CTTGGTGTTCTCTAGATGCA+TGG + tig0018152:88873-88892 Msa1364530:three_prime_UTR 45.0%
!!! TTTTTATTTTTAACTTTTTT+TGG - tig0018152:87049-87068 None:intergenic 5.0%
!!! TTTTTATTTTTAACTTTTTT+TGG - tig0018152:87049-87068 None:intergenic 5.0%
! TGGATGACGGTTACAAGTGG+AGG + tig0018152:87504-87523 Msa1364530:CDS 50.0%
! GGAAAGAAGGGTGTGGAGAT+TGG - tig0018152:88088-88107 None:intergenic 50.0%
AGCGCTTAGCTGAAGATCCA+AGG + tig0018152:88541-88560 Msa1364530:CDS 50.0%
TATGGTGTGCTTGGAAGGGA+TGG - tig0018152:88822-88841 None:intergenic 50.0%
CAGCCATCATATGGTGTGCT+TGG - tig0018152:88831-88850 None:intergenic 50.0%
! TGGATGACGGTTACAAGTGG+AGG + tig0018152:87504-87523 Msa1364530:CDS 50.0%
! GGAAAGAAGGGTGTGGAGAT+TGG - tig0018152:88088-88107 None:intergenic 50.0%
AGCGCTTAGCTGAAGATCCA+AGG + tig0018152:88541-88560 Msa1364530:CDS 50.0%
TATGGTGTGCTTGGAAGGGA+TGG - tig0018152:88822-88841 None:intergenic 50.0%
CAGCCATCATATGGTGTGCT+TGG - tig0018152:88831-88850 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
tig0018152 gene 86599 89034 86599 ID=Msa1364530;Name=Msa1364530
tig0018152 mRNA 86599 89034 86599 ID=Msa1364530-mRNA-1;Parent=Msa1364530;Name=Msa1364530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=110|1|1|1|1|1|3|378|235
tig0018152 exon 86599 87001 86599 ID=Msa1364530-mRNA-1:exon:14013;Parent=Msa1364530-mRNA-1
tig0018152 exon 87319 87567 87319 ID=Msa1364530-mRNA-1:exon:14014;Parent=Msa1364530-mRNA-1
tig0018152 exon 88491 89034 88491 ID=Msa1364530-mRNA-1:exon:14015;Parent=Msa1364530-mRNA-1
tig0018152 five_prime_UTR 86599 86708 86599 ID=Msa1364530-mRNA-1:five_prime_utr;Parent=Msa1364530-mRNA-1
tig0018152 CDS 86709 87001 86709 ID=Msa1364530-mRNA-1:cds;Parent=Msa1364530-mRNA-1
tig0018152 CDS 87319 87567 87319 ID=Msa1364530-mRNA-1:cds;Parent=Msa1364530-mRNA-1
tig0018152 CDS 88491 88656 88491 ID=Msa1364530-mRNA-1:cds;Parent=Msa1364530-mRNA-1
tig0018152 three_prime_UTR 88657 89034 88657 ID=Msa1364530-mRNA-1:three_prime_utr;Parent=Msa1364530-mRNA-1
Gene Sequence

>Msa1364530

ATGTCTCAAATTATCGTTGACAACAACTTATTTGAGGAGGAGGATCAGATTCCCACACAAATGGGGTTCATTCCTTTCCCAACAAACCTAACTTTCCCTTCTTTGGGTTGCAATCAATCTTTGAAAGCCTTCAGTTCCATAGCTTCTTCACTTACATCTGAATCAGATTCTACATCAAATCTAACACAAACCCTACTCACAACCAATCCTCAAAAATCAAAAGAATACCTCACTTCTAGCTTTGGAGGAAGTACTCCATTCCTATCCTTGCATAGATCCATTGTAAATCCATGGGCAATATTGGGAGGAGAAGTAATAAGTAATTGCATGAATAATAGTGGTAAAAGAAATGGAGTAGATCATCATGATAATCATTTGGGGGTTTCTGCTACCATGAAAATGAAGAAAATGAAGGGAAGAAAGAAAGTGAGAGAGCCTAGGTTTTGCTTCAAGACATTGAGTACTGATGTGGATGTGTTGGATGACGGTTACAAGTGGAGGAAGTATGGACAAAAAGTTGTAAAGAACACACAACATCCCAGAAGCTATTACCGTTGCACACAAGAGAATTGTCGTGTAAAGAAACGTGTGGAGCGCTTAGCTGAAGATCCAAGGATGGTAATAACCACATATGAAGGAAGACATGTACATTCTCCATCCAATGATCTTGAAGACTCTCGAACTCAATCTGACAATTTCTTATGGTAG
Protein sequence

>Msa1364530

MSQIIVDNNLFEEEDQIPTQMGFIPFPTNLTFPSLGCNQSLKAFSSIASSLTSESDSTSNLTQTLLTTNPQKSKEYLTSSFGGSTPFLSLHRSIVNPWAILGGEVISNCMNNSGKRNGVDHHDNHLGVSATMKMKKMKGRKKVREPRFCFKTLSTDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLEDSRTQSDNFLW*