AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568480 MtrunA17_Chr8g0383351 96.170 235 8 1 1 235 1 234 5.97e-160 442
Msa0568480 MtrunA17_Chr3g0129361 59.919 247 56 11 2 235 4 220 2.72e-77 232
Msa0568480 MtrunA17_Chr8g0335811 57.343 143 50 3 85 227 89 220 1.82e-46 154
Msa0568480 MtrunA17_Chr5g0418781 67.073 82 26 1 136 217 100 180 1.39e-32 119
Msa0568480 MtrunA17_Chr1g0194481 66.234 77 25 1 141 217 139 214 4.60e-30 114
Msa0568480 MtrunA17_Chr4g0051881 69.444 72 21 1 146 217 164 234 5.91e-29 111
Msa0568480 MtrunA17_Chr2g0294231 67.568 74 23 1 144 217 187 259 6.99e-29 112
Msa0568480 MtrunA17_Chr7g0270191 56.566 99 39 3 119 217 107 201 8.23e-29 110
Msa0568480 MtrunA17_Chr3g0101131 62.338 77 28 1 141 217 396 471 9.35e-29 113
Msa0568480 MtrunA17_Chr3g0101131 56.140 57 24 1 161 217 243 298 7.17e-15 73.2
Msa0568480 MtrunA17_Chr3g0106491 62.025 79 29 1 139 217 344 421 9.64e-29 112
Msa0568480 MtrunA17_Chr3g0106491 56.140 57 24 1 161 217 198 253 1.08e-14 72.8
Msa0568480 MtrunA17_Chr5g0445311 59.740 77 30 1 141 217 345 420 1.16e-28 113
Msa0568480 MtrunA17_Chr5g0445311 53.125 64 26 2 161 221 200 262 4.23e-14 70.9
Msa0568480 MtrunA17_Chr7g0218081 49.565 115 53 3 104 217 356 466 1.51e-28 112
Msa0568480 MtrunA17_Chr7g0218081 59.649 57 22 1 161 217 228 283 1.97e-16 77.8
Msa0568480 MtrunA17_Chr7g0248721 56.180 89 34 3 132 217 110 196 2.37e-28 107
Msa0568480 MtrunA17_Chr5g0432161 63.636 77 27 1 141 217 402 477 3.04e-28 112
Msa0568480 MtrunA17_Chr5g0432161 56.140 57 24 1 161 217 244 299 1.16e-14 72.8
Msa0568480 MtrunA17_Chr4g0068541 66.216 74 24 1 144 217 192 264 9.28e-28 109
Msa0568480 MtrunA17_Chr5g0443131 65.278 72 24 1 146 217 143 213 2.20e-27 106
Msa0568480 MtrunA17_Chr4g0042831 41.538 130 63 2 113 233 221 346 4.63e-27 107
Msa0568480 MtrunA17_Chr4g0042831 54.386 57 26 0 161 217 145 201 1.97e-15 74.7
Msa0568480 MtrunA17_Chr5g0418191 59.740 77 30 1 141 217 301 376 7.18e-27 107
Msa0568480 MtrunA17_Chr5g0418191 45.745 94 44 4 143 232 134 224 2.05e-15 74.7
Msa0568480 MtrunA17_Chr3g0079691 59.740 77 30 1 141 217 476 551 9.83e-27 107
Msa0568480 MtrunA17_Chr3g0079691 56.140 57 24 1 161 217 280 335 3.46e-15 74.3
Msa0568480 MtrunA17_Chr7g0224801 62.857 70 25 1 148 217 81 149 1.20e-26 101
Msa0568480 MtrunA17_Chr8g0386241 40.000 115 63 2 125 234 63 176 1.28e-26 101
Msa0568480 MtrunA17_Chr1g0150801 55.814 86 37 1 132 217 74 158 2.15e-26 100
Msa0568480 MtrunA17_Chr4g0004911 57.500 80 33 1 138 217 314 392 3.66e-26 105
Msa0568480 MtrunA17_Chr4g0004911 52.632 57 27 0 161 217 184 240 3.44e-15 74.3
Msa0568480 MtrunA17_Chr7g0249311 52.381 84 39 1 134 217 366 448 1.84e-25 104
Msa0568480 MtrunA17_Chr7g0249311 55.172 58 25 1 161 218 179 235 5.51e-16 76.6
Msa0568480 MtrunA17_Chr7g0249301 54.762 84 37 1 134 217 266 348 4.99e-25 101
Msa0568480 MtrunA17_Chr7g0249301 53.226 62 28 1 160 221 61 121 2.92e-15 73.9
Msa0568480 MtrunA17_Chr7g0243891 57.143 77 32 1 141 217 355 430 9.22e-25 102
Msa0568480 MtrunA17_Chr7g0243891 54.386 57 25 1 161 217 216 271 2.27e-14 72.0
Msa0568480 MtrunA17_Chr3g0129321 58.442 77 30 2 146 221 104 179 6.00e-24 95.1
Msa0568480 MtrunA17_Chr1g0188941 46.739 92 48 1 126 217 17 107 8.22e-24 92.0
Msa0568480 MtrunA17_Chr7g0263531 57.534 73 30 1 145 217 346 417 3.65e-23 97.1
Msa0568480 MtrunA17_Chr7g0263531 57.143 56 23 1 162 217 190 244 1.13e-14 72.4
Msa0568480 MtrunA17_Chr1g0189391 43.519 108 46 2 140 232 62 169 9.57e-23 94.4
Msa0568480 MtrunA17_Chr7g0238921 42.424 99 57 0 119 217 82 180 1.66e-21 90.9
Msa0568480 MtrunA17_Chr8g0383251 53.521 71 32 1 147 217 95 164 3.43e-20 84.7
Msa0568480 MtrunA17_Chr5g0447701 50.667 75 36 1 145 219 237 310 2.47e-19 85.9
Msa0568480 MtrunA17_Chr2g0333851 47.436 78 39 2 142 217 149 226 4.55e-19 84.3
Msa0568480 MtrunA17_Chr1g0147881 38.095 126 66 4 99 218 201 320 4.77e-19 84.3
Msa0568480 MtrunA17_Chr6g0485431 47.945 73 36 2 146 217 140 211 5.19e-19 84.7
Msa0568480 MtrunA17_Chr2g0322391 43.158 95 51 3 138 230 327 420 8.12e-19 84.7
Msa0568480 MtrunA17_Chr3g0139021 46.429 84 40 3 135 217 292 371 1.86e-18 83.2
Msa0568480 MtrunA17_Chr4g0074001 48.052 77 39 1 141 217 340 415 1.88e-18 83.6
Msa0568480 MtrunA17_Chr4g0053281 43.678 87 44 2 133 218 242 324 2.67e-18 82.4
Msa0568480 MtrunA17_Chr5g0401821 43.820 89 45 2 133 220 175 259 3.47e-18 81.3
Msa0568480 MtrunA17_Chr4g0060271 46.753 77 39 2 143 218 238 313 1.69e-17 80.9
Msa0568480 MtrunA17_Chr7g0228941 50.000 66 32 1 158 222 49 114 5.59e-17 74.7
Msa0568480 MtrunA17_Chr4g0075201 47.368 76 38 2 143 217 250 324 5.65e-17 79.3
Msa0568480 MtrunA17_Chr7g0270831 51.562 64 30 1 155 217 210 273 7.82e-17 79.0
Msa0568480 MtrunA17_Chr2g0288871 46.053 76 39 2 143 217 288 362 1.18e-16 78.6
Msa0568480 MtrunA17_Chr3g0099641 44.156 77 41 2 143 218 234 309 1.62e-16 78.2
Msa0568480 MtrunA17_Chr4g0071521 39.080 87 48 2 133 218 221 303 2.05e-16 77.0
Msa0568480 MtrunA17_Chr1g0150281 52.632 57 26 1 162 217 141 197 2.90e-16 75.9
Msa0568480 MtrunA17_Chr7g0216891 52.381 63 29 1 156 217 214 276 5.01e-16 76.6
Msa0568480 MtrunA17_Chr3g0136961 50.000 60 29 1 160 218 137 196 7.97e-16 75.1
Msa0568480 MtrunA17_Chr1g0184691 38.824 85 47 2 135 218 271 351 1.60e-15 74.7
Msa0568480 MtrunA17_Chr4g0025061 48.611 72 35 2 147 217 347 417 2.08e-15 75.1
Msa0568480 MtrunA17_Chr8g0387981 52.308 65 28 1 161 222 132 196 2.86e-15 73.9
Msa0568480 MtrunA17_Chr3g0126391 53.333 60 25 1 160 216 132 191 3.29e-15 73.6
Msa0568480 MtrunA17_Chr2g0302391 36.752 117 69 4 102 217 156 268 5.97e-15 73.2
Msa0568480 MtrunA17_Chr1g0150271 43.077 65 36 1 159 222 99 163 6.92e-15 71.6
Msa0568480 MtrunA17_Chr4g0001361 48.333 60 30 1 159 217 160 219 8.21e-15 72.4
Msa0568480 MtrunA17_Chr4g0051181 51.667 60 28 1 159 217 241 300 1.46e-14 72.4
Msa0568480 MtrunA17_Chr8g0348311 37.374 99 52 3 123 217 120 212 1.57e-14 71.6
Msa0568480 MtrunA17_Chr2g0293481 33.333 126 78 3 97 217 200 324 2.88e-14 71.6
Msa0568480 MtrunA17_Chr7g0244981 50.847 59 26 1 161 216 122 180 3.26e-14 70.1
Msa0568480 MtrunA17_Chr2g0315381 50.820 61 27 1 159 216 142 202 5.44e-14 70.1
Msa0568480 MtrunA17_Chr5g0432071 52.632 57 26 1 161 217 104 159 1.13e-13 67.8
Msa0568480 MtrunA17_Chr2g0315361 46.667 60 29 1 159 215 146 205 2.46e-13 68.2
Msa0568480 MtrunA17_Chr7g0244971 40.476 84 40 3 143 216 98 181 2.73e-13 67.8
Msa0568480 MtrunA17_Chr7g0275531 47.143 70 32 2 160 224 117 186 3.70e-13 67.8
Msa0568480 MtrunA17_Chr8g0379461 48.276 58 29 1 162 218 77 134 4.49e-13 66.6
Msa0568480 MtrunA17_Chr5g0447711 42.667 75 42 1 145 219 215 288 4.97e-13 67.0
Msa0568480 MtrunA17_Chr8g0387501 47.692 65 32 2 155 217 122 186 9.27e-13 66.2
Msa0568480 MtrunA17_Chr4g0025051 45.946 74 38 2 159 230 333 406 9.55e-13 67.0
Msa0568480 MtrunA17_Chr2g0284321 46.552 58 30 1 162 218 36 93 9.72e-13 65.1
Msa0568480 MtrunA17_Chr2g0289181 46.552 58 30 1 162 218 15 72 1.39e-12 65.1
Msa0568480 MtrunA17_Chr8g0334541 45.763 59 29 1 161 216 103 161 1.40e-12 65.5
Msa0568480 MtrunA17_Chr7g0248691 36.842 95 53 2 124 217 123 211 1.97e-12 65.5
Msa0568480 MtrunA17_Chr8g0350621 44.828 58 29 1 161 215 111 168 2.58e-12 64.7
Msa0568480 MtrunA17_Chr8g0347251 35.714 126 72 3 107 229 88 207 2.63e-12 65.5
Msa0568480 MtrunA17_Chr7g0270051 49.123 57 28 1 162 217 54 110 6.99e-12 63.5
Msa0568480 MtrunA17_Chr2g0315371 43.333 60 31 1 159 215 139 198 1.37e-11 63.2
Msa0568480 MtrunA17_Chr2g0319961 46.552 58 30 1 162 218 81 138 1.86e-11 62.4
Msa0568480 MtrunA17_Chr3g0128671 42.424 66 30 2 162 219 128 193 4.27e-11 61.6
Msa0568480 MtrunA17_Chr1g0202461 44.828 58 31 1 162 218 262 319 7.56e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568480 AT4G39410.1 72.000 125 23 3 122 235 181 304 5.69e-59 189
Msa0568480 AT2G44745.1 65.600 125 39 3 101 222 83 206 8.73e-48 157
Msa0568480 AT1G69310.4 65.060 83 28 1 135 217 122 203 2.30e-33 122
Msa0568480 AT1G69310.2 65.060 83 28 1 135 217 122 203 2.30e-33 122
Msa0568480 AT1G69310.1 65.060 83 28 1 135 217 122 203 2.30e-33 122
Msa0568480 AT1G64000.1 63.415 82 29 1 136 217 90 170 2.21e-30 112
Msa0568480 AT5G41570.1 61.176 85 32 1 133 217 71 154 2.22e-30 111
Msa0568480 AT2G46130.1 59.091 88 34 2 141 228 11 96 1.28e-29 107
Msa0568480 AT4G18170.1 65.854 82 26 2 141 221 153 233 1.92e-29 112
Msa0568480 AT5G49520.1 67.568 74 23 1 144 217 205 277 2.51e-29 113
Msa0568480 AT4G26640.5 55.435 92 33 2 133 217 171 261 4.53e-29 112
Msa0568480 AT4G26640.5 53.125 64 29 1 154 217 28 90 3.64e-14 71.2
Msa0568480 AT4G26640.6 55.435 92 33 2 133 217 171 261 4.53e-29 112
Msa0568480 AT4G26640.6 53.125 64 29 1 154 217 28 90 3.64e-14 71.2
Msa0568480 AT4G26640.4 55.435 92 33 2 133 217 171 261 4.53e-29 112
Msa0568480 AT4G26640.4 53.125 64 29 1 154 217 28 90 3.64e-14 71.2
Msa0568480 AT4G26640.3 55.435 92 33 2 133 217 171 261 4.53e-29 112
Msa0568480 AT4G26640.3 53.125 64 29 1 154 217 28 90 3.64e-14 71.2
Msa0568480 AT4G26640.7 55.435 92 33 2 133 217 307 397 6.18e-29 114
Msa0568480 AT4G26640.7 53.125 64 29 1 154 217 164 226 1.83e-14 72.4
Msa0568480 AT4G26640.1 55.435 92 33 2 133 217 275 365 7.58e-29 113
Msa0568480 AT4G26640.1 53.125 64 29 1 154 217 132 194 2.32e-14 72.0
Msa0568480 AT4G26640.2 55.435 92 33 2 133 217 347 437 7.65e-29 114
Msa0568480 AT4G26640.2 53.125 64 29 1 154 217 204 266 1.80e-14 72.4
Msa0568480 AT5G07100.1 50.000 110 44 2 108 217 192 290 2.76e-28 109
Msa0568480 AT5G07100.1 52.632 57 27 0 161 217 117 173 4.49e-14 70.5
Msa0568480 AT5G07100.2 50.000 110 44 2 108 217 99 197 3.77e-28 106
Msa0568480 AT5G07100.2 52.632 57 27 0 161 217 24 80 7.97e-14 68.6
Msa0568480 AT5G07100.4 50.000 110 44 2 108 217 99 197 3.77e-28 106
Msa0568480 AT5G07100.4 52.632 57 27 0 161 217 24 80 7.97e-14 68.6
Msa0568480 AT5G07100.5 50.000 110 44 2 108 217 99 197 3.77e-28 106
Msa0568480 AT5G07100.5 52.632 57 27 0 161 217 24 80 7.97e-14 68.6
Msa0568480 AT5G07100.3 50.000 110 44 2 108 217 99 197 3.77e-28 106
Msa0568480 AT5G07100.3 52.632 57 27 0 161 217 24 80 7.97e-14 68.6
Msa0568480 AT5G26170.1 64.000 75 26 1 147 221 100 173 4.54e-28 105
Msa0568480 AT1G69310.3 60.241 83 28 2 135 217 122 199 1.00e-27 107
Msa0568480 AT2G47260.1 60.465 86 32 2 132 217 147 230 1.69e-27 107
Msa0568480 AT1G29860.1 64.865 74 25 1 144 217 120 192 1.77e-27 106
Msa0568480 AT2G38470.1 63.636 77 27 1 141 217 343 418 2.36e-27 109
Msa0568480 AT2G38470.1 54.386 57 25 1 161 217 184 239 1.17e-13 70.1
Msa0568480 AT1G13960.1 61.039 77 29 1 141 217 390 465 3.61e-27 108
Msa0568480 AT1G13960.1 55.932 59 25 1 161 219 229 286 2.55e-15 75.1
Msa0568480 AT2G03340.1 44.737 114 62 1 104 217 359 471 3.63e-27 108
Msa0568480 AT2G03340.1 56.140 57 24 1 161 217 250 305 5.86e-14 70.9
Msa0568480 AT1G13960.2 61.039 77 29 1 141 217 237 312 5.42e-27 106
Msa0568480 AT1G13960.2 55.932 59 25 1 161 219 76 133 9.87e-15 72.8
Msa0568480 AT2G30250.1 63.636 77 27 1 141 217 309 384 5.59e-27 107
Msa0568480 AT2G30250.1 50.877 57 27 1 161 217 166 221 2.41e-11 63.2
Msa0568480 AT5G56270.1 61.039 77 29 1 141 217 468 543 8.46e-27 108
Msa0568480 AT5G56270.1 56.140 57 24 1 161 217 273 328 1.42e-15 75.9
Msa0568480 AT5G46350.1 65.278 72 24 1 146 217 169 239 1.53e-26 105
Msa0568480 AT3G01080.2 55.056 89 35 2 133 217 313 400 2.00e-26 106
Msa0568480 AT3G01080.2 56.140 57 24 1 161 217 205 260 2.30e-15 75.1
Msa0568480 AT3G01080.1 55.056 89 35 2 133 217 275 362 3.54e-26 105
Msa0568480 AT3G01080.1 56.140 57 24 1 161 217 167 222 4.50e-15 73.9
Msa0568480 AT5G13080.1 63.380 71 25 1 147 217 54 123 3.92e-26 99.4
Msa0568480 AT3G01970.1 54.444 90 37 2 147 233 52 140 4.91e-26 99.4
Msa0568480 AT4G26440.1 57.143 77 32 1 141 217 353 428 1.36e-24 102
Msa0568480 AT4G26440.1 56.897 58 24 1 161 218 178 234 6.29e-17 79.7
Msa0568480 AT2G46130.2 54.545 88 34 3 141 228 11 92 4.97e-24 92.8
Msa0568480 AT2G37260.2 62.500 64 24 0 154 217 260 323 6.72e-24 98.2
Msa0568480 AT2G37260.2 49.315 73 36 1 146 218 68 139 4.39e-14 70.9
Msa0568480 AT2G37260.3 62.500 64 24 0 154 217 262 325 6.75e-24 98.2
Msa0568480 AT2G37260.3 49.315 73 36 1 146 218 70 141 4.48e-14 70.9
Msa0568480 AT5G64810.1 39.844 128 70 2 90 217 46 166 8.72e-24 94.7
Msa0568480 AT2G37260.1 62.500 64 24 0 154 217 342 405 1.32e-23 98.6
Msa0568480 AT2G37260.1 49.315 73 36 1 146 218 150 221 5.20e-14 70.9
Msa0568480 AT3G62340.1 59.524 84 31 2 134 217 94 174 1.57e-23 95.9
Msa0568480 AT2G04880.2 32.727 220 106 9 5 217 155 339 1.25e-22 95.9
Msa0568480 AT2G04880.2 55.932 59 25 1 159 217 109 166 1.73e-14 72.4
Msa0568480 AT2G04880.1 36.420 162 75 6 63 217 223 363 1.19e-20 90.5
Msa0568480 AT2G04880.1 55.932 59 25 1 159 217 109 166 1.91e-14 72.4
Msa0568480 AT1G55600.1 45.882 85 46 0 133 217 279 363 1.23e-20 90.5
Msa0568480 AT2G21900.1 47.253 91 41 4 136 220 80 169 2.10e-19 83.2
Msa0568480 AT2G23320.1 47.126 87 41 2 133 218 216 298 7.54e-19 84.0
Msa0568480 AT4G31550.2 34.783 161 86 5 81 234 171 319 1.35e-18 83.6
Msa0568480 AT4G31550.1 35.404 161 86 5 81 234 171 320 1.37e-18 83.6
Msa0568480 AT5G43290.1 50.704 71 35 0 147 217 100 170 2.21e-18 82.0
Msa0568480 AT5G15130.2 48.052 77 38 2 143 218 168 243 3.67e-18 83.2
Msa0568480 AT5G15130.1 48.052 77 38 2 143 218 210 285 3.98e-18 83.2
Msa0568480 AT4G30935.1 54.839 62 28 0 156 217 326 387 7.45e-18 82.4
Msa0568480 AT2G25000.2 51.667 60 28 1 160 218 102 161 2.65e-17 78.2
Msa0568480 AT2G25000.4 51.667 60 28 1 160 218 102 161 2.65e-17 78.2
Msa0568480 AT4G31800.2 47.887 71 36 1 159 228 109 179 2.70e-17 78.6
Msa0568480 AT4G04450.2 35.772 123 66 2 96 217 145 255 2.91e-17 80.5
Msa0568480 AT2G25000.3 51.667 60 28 1 160 218 124 183 3.76e-17 78.2
Msa0568480 AT2G25000.1 51.667 60 28 1 160 218 145 204 5.53e-17 78.2
Msa0568480 AT4G31800.1 51.667 60 28 1 159 217 174 233 5.64e-17 78.6
Msa0568480 AT4G04450.1 35.772 123 66 2 96 217 239 349 7.56e-17 79.3
Msa0568480 AT2G30590.1 43.023 86 44 2 133 217 289 370 7.78e-17 79.0
Msa0568480 AT5G28650.1 41.379 87 46 2 133 218 238 320 8.77e-17 78.6
Msa0568480 AT1G80840.1 43.678 87 45 3 135 217 117 203 1.30e-16 77.8
Msa0568480 AT2G24570.1 41.509 106 52 3 113 217 204 300 2.66e-16 77.0
Msa0568480 AT1G62300.1 47.368 76 38 2 143 217 295 369 3.08e-16 77.8
Msa0568480 AT3G01080.3 56.140 57 24 1 161 217 205 260 5.70e-16 76.3
Msa0568480 AT4G22070.4 47.368 76 38 2 143 217 280 354 5.91e-16 77.0
Msa0568480 AT4G22070.3 47.368 76 38 2 143 217 280 354 5.91e-16 77.0
Msa0568480 AT4G22070.2 47.368 76 38 2 143 217 280 354 5.91e-16 77.0
Msa0568480 AT4G22070.1 47.368 76 38 2 143 217 280 354 5.91e-16 77.0
Msa0568480 AT3G04670.1 40.230 87 47 2 133 218 238 320 7.01e-16 75.9
Msa0568480 AT4G24240.1 40.230 87 47 2 133 218 257 339 9.69e-16 75.5
Msa0568480 AT4G01720.1 38.739 111 55 3 119 217 187 296 1.90e-15 75.5
Msa0568480 AT1G18860.1 51.667 60 28 1 159 217 237 296 6.46e-15 73.9
Msa0568480 AT4G01250.1 41.463 82 38 3 140 217 110 185 1.29e-14 72.0
Msa0568480 AT1G68150.1 39.216 102 53 3 121 217 195 292 1.64e-14 72.4
Msa0568480 AT1G66550.2 49.153 59 27 1 161 216 103 161 2.41e-14 70.5
Msa0568480 AT1G66550.1 49.153 59 27 1 161 216 108 166 3.36e-14 70.1
Msa0568480 AT1G66560.1 49.153 59 27 1 161 216 103 161 4.21e-14 70.1
Msa0568480 AT3G56400.1 37.349 83 43 2 143 216 96 178 5.88e-14 70.1
Msa0568480 AT2G34830.1 38.636 88 52 2 132 217 185 272 1.86e-13 69.3
Msa0568480 AT2G34830.2 38.636 88 52 2 132 217 194 281 1.91e-13 69.3
Msa0568480 AT5G01900.1 35.366 82 50 1 138 216 87 168 2.13e-13 68.2
Msa0568480 AT1G69810.2 44.156 77 40 3 143 217 128 203 3.30e-13 68.2
Msa0568480 AT1G29280.1 44.444 63 34 1 156 217 69 131 3.45e-13 67.4
Msa0568480 AT1G69810.1 44.156 77 40 3 143 217 186 261 3.79e-13 68.6
Msa0568480 AT1G30650.1 38.636 88 52 2 132 217 187 274 4.25e-13 68.2
Msa0568480 AT2G40740.1 29.787 188 112 7 37 215 54 230 4.52e-13 67.4
Msa0568480 AT2G40740.3 29.787 188 112 7 37 215 63 239 5.93e-13 67.4
Msa0568480 AT4G12020.5 44.928 69 37 1 160 228 400 467 1.28e-12 67.4
Msa0568480 AT4G12020.3 44.928 69 37 1 160 228 467 534 1.28e-12 67.4
Msa0568480 AT4G12020.10 44.928 69 37 1 160 228 467 534 1.29e-12 67.4
Msa0568480 AT4G12020.2 44.928 69 37 1 160 228 467 534 1.35e-12 67.4
Msa0568480 AT4G12020.1 44.928 69 37 1 160 228 467 534 1.37e-12 67.4
Msa0568480 AT4G12020.9 44.928 69 37 1 160 228 467 534 1.37e-12 67.4
Msa0568480 AT4G12020.4 44.928 69 37 1 160 228 467 534 1.38e-12 67.4
Msa0568480 AT4G12020.6 44.928 69 37 1 160 228 467 534 1.38e-12 67.4
Msa0568480 AT4G12020.8 44.928 69 37 1 160 228 467 534 1.38e-12 67.4
Msa0568480 AT4G12020.7 44.928 69 37 1 160 228 467 534 1.47e-12 67.4
Msa0568480 AT1G66600.1 47.458 59 28 1 160 215 102 160 1.47e-12 65.5
Msa0568480 AT5G52830.1 49.123 57 28 1 162 217 166 222 1.51e-12 66.6
Msa0568480 AT4G23550.1 44.262 61 33 1 158 217 137 197 2.05e-12 65.9
Msa0568480 AT4G12020.11 44.928 69 37 1 160 228 467 534 2.09e-12 66.6
Msa0568480 AT5G22570.1 46.552 58 28 1 162 216 111 168 1.18e-11 63.5
Msa0568480 AT1G80590.1 44.828 58 29 1 162 216 86 143 1.58e-11 62.4
Msa0568480 AT2G46400.1 36.471 85 51 1 134 215 77 161 2.33e-11 62.8
Msa0568480 AT5G24110.1 39.759 83 38 2 159 229 111 193 2.99e-11 62.4
Msa0568480 AT5G45050.4 47.368 57 29 1 162 217 1042 1098 8.12e-11 62.0
Msa0568480 AT2G40750.1 41.667 72 38 2 161 229 152 222 8.24e-11 61.2
Msa0568480 AT5G45050.1 47.368 57 29 1 162 217 1181 1237 9.04e-11 62.0
Msa0568480 AT5G45050.2 47.368 57 29 1 162 217 1153 1209 9.28e-11 62.0

Find 74 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCTAACTTTCCCTTCTT+TGG 0.155148 4_1:-70079415 Msa0568480:CDS
ATATATATATAGGGCAATAT+TGG 0.271320 4_1:-70078892 Msa0568480:intron
CTCAATCTGACAATTTCTTA+TGG 0.303911 4_1:-70077732 Msa0568480:CDS
GATCATCATGATAATCATTT+GGG 0.306049 4_1:-70078816 Msa0568480:CDS
AACCTAACTTTCCCTTCTTT+GGG 0.323054 4_1:-70079414 Msa0568480:CDS
TTGAGGATTGGTTGTGAGTA+GGG 0.323819 4_1:+70079308 None:intergenic
TTGAGAGTCTTCAAGATCAT+TGG 0.350233 4_1:+70077756 None:intergenic
GAAGGGAAAGTTAGGTTTGT+TGG 0.351164 4_1:+70079420 None:intergenic
GGTTACAAGTGGAGGAAGTA+TGG 0.371030 4_1:-70078687 Msa0568480:CDS
CAAGGCAAAACTATAAAGTA+TGG 0.372064 4_1:+70077359 None:intergenic
AGATCATCATGATAATCATT+TGG 0.374995 4_1:-70078817 Msa0568480:CDS
GAATACCTCACTTCTAGCTT+TGG 0.383644 4_1:-70079276 Msa0568480:CDS
CTTTCTTCTTTAATTATATG+AGG 0.385541 4_1:+70079553 None:intergenic
TTTGAGGATTGGTTGTGAGT+AGG 0.394005 4_1:+70079307 None:intergenic
AAGGGAAAGTTAGGTTTGTT+GGG 0.400880 4_1:+70079421 None:intergenic
AATAATAGTGGTAAAAGAAA+TGG 0.401015 4_1:-70078843 Msa0568480:CDS
TATGTGGTTATTACCATCCT+TGG 0.403815 4_1:+70077805 None:intergenic
CTCATATAATTAAAGAAGAA+AGG 0.411657 4_1:-70079552 Msa0568480:five_prime_UTR
TATATATATAGGGCAATATT+GGG 0.416994 4_1:-70078891 Msa0568480:intron
CATCATATGGTGTGCTTGGA+AGG 0.421273 4_1:+70077539 None:intergenic
TCTACTAATATTAAAGGTCT+AGG 0.424898 4_1:-70077649 Msa0568480:three_prime_UTR
AACCCAAAGAAGGGAAAGTT+AGG 0.429367 4_1:+70079412 None:intergenic
CCAAACACAGAAAATTGAAT+AGG 0.430088 4_1:+70077336 None:intergenic
GGATCAGATTCCCACACAAA+TGG 0.430482 4_1:-70079457 Msa0568480:CDS
GATCAGATTCCCACACAAAT+GGG 0.432708 4_1:-70079456 Msa0568480:CDS
CAGCCATCATATGGTGTGCT+TGG 0.459290 4_1:+70077535 None:intergenic
AGTAATTGCATGAATAATAG+TGG 0.478312 4_1:-70078855 Msa0568480:CDS
CAACAACTTATTTGAGGAGG+AGG 0.479257 4_1:-70079478 Msa0568480:CDS
GATTGATTGCAACCCAAAGA+AGG 0.483315 4_1:+70079402 None:intergenic
CGTTGACAACAACTTATTTG+AGG 0.483533 4_1:-70079484 Msa0568480:CDS
CATGAAAATGAAGAAAATGA+AGG 0.488233 4_1:-70078781 Msa0568480:CDS
TACCTCACTTCTAGCTTTGG+AGG 0.489395 4_1:-70079273 Msa0568480:CDS
TCTAGAGCTAGCAAGAGGTT+AGG 0.492548 4_1:+70079605 None:intergenic
AAAGTTAGGTTTGTTGGGAA+AGG 0.496923 4_1:+70079426 None:intergenic
TCATATAATTAAAGAAGAAA+GGG 0.504785 4_1:-70079551 Msa0568480:five_prime_UTR
AGATGTAAGTGAAGAAGCTA+TGG 0.510048 4_1:+70079362 None:intergenic
TACATGTCTTCCTTCATATG+TGG 0.519036 4_1:+70077789 None:intergenic
ATGGTAATAACCACATATGA+AGG 0.520270 4_1:-70077799 Msa0568480:CDS
CAATGGATCTATGCAAGGAT+AGG 0.526046 4_1:+70079238 None:intergenic
AAGATCAAATAAGTACAGAA+TGG 0.531246 4_1:-70077606 Msa0568480:three_prime_UTR
ATGAAAATGAAGAAAATGAA+GGG 0.532779 4_1:-70078780 Msa0568480:CDS
CTTCCAAGCACACCATATGA+TGG 0.538420 4_1:-70077538 Msa0568480:three_prime_UTR
TGAAGAAGCTATGGAACTGA+AGG 0.544848 4_1:+70079371 None:intergenic
GTCTCACCATGGATTTACAA+TGG 0.548992 4_1:+70079221 None:intergenic
CACAGAAAATTGAATAGGCA+AGG 0.549519 4_1:+70077341 None:intergenic
TATGGTGTGCTTGGAAGGGA+TGG 0.557396 4_1:+70077544 None:intergenic
GATGTGGATGTGTTGGATGA+TGG 0.559861 4_1:-70078708 Msa0568480:CDS
CTTGGTGTTCTCTAGATGCA+TGG 0.560309 4_1:-70077490 Msa0568480:three_prime_UTR
AGGAATGAACCCCATTTGTG+TGG 0.571470 4_1:+70079446 None:intergenic
GAAAGAAAGTGAGAGAGCCT+AGG 0.575300 4_1:-70078755 Msa0568480:CDS
GATCTATGCAAGGATAGGAA+TGG 0.576173 4_1:+70079243 None:intergenic
ATTGATTGCAACCCAAAGAA+GGG 0.576930 4_1:+70079403 None:intergenic
GAGTCTTCAAGATCATTGGA+TGG 0.577891 4_1:+70077760 None:intergenic
ATAGATCCATTGTAAATCCA+TGG 0.578759 4_1:-70079227 Msa0568480:intron
GAGTACTGATGTGGATGTGT+TGG 0.603265 4_1:-70078715 Msa0568480:CDS
TAAAGAACACACAACATCCC+AGG 0.608791 4_1:-70078653 Msa0568480:intron
TGACAACAACTTATTTGAGG+AGG 0.610316 4_1:-70079481 Msa0568480:CDS
ATTTACAATGGATCTATGCA+AGG 0.612859 4_1:+70079233 None:intergenic
GGAATGAACCCCATTTGTGT+GGG 0.612916 4_1:+70079447 None:intergenic
AGCGCTTAGCTGAAGATCCA+AGG 0.615258 4_1:-70077822 Msa0568480:CDS
ATCATCATGATAATCATTTG+GGG 0.627967 4_1:-70078815 Msa0568480:CDS
TGGATGATGGTTACAAGTGG+AGG 0.635586 4_1:-70078695 Msa0568480:CDS
GACAATTCTCTTGTGTGCAA+CGG 0.637189 4_1:+70077863 None:intergenic
AGCTTTCTAGAGCTAGCAAG+AGG 0.638887 4_1:+70079600 None:intergenic
ATCATATGGTGTGCTTGGAA+GGG 0.650374 4_1:+70077540 None:intergenic
CTTAGCTGAAGATCCAAGGA+TGG 0.650835 4_1:-70077818 Msa0568480:CDS
TCATCATGATAATCATTTGG+GGG 0.652014 4_1:-70078814 Msa0568480:CDS
ATATATAGGGCAATATTGGG+AGG 0.658760 4_1:-70078888 Msa0568480:intron
AATGTCTTGAAGCAAAACCT+AGG 0.659684 4_1:+70078738 None:intergenic
ATCAGATTCCCACACAAATG+GGG 0.662202 4_1:-70079455 Msa0568480:CDS
TGTTGGATGATGGTTACAAG+TGG 0.666245 4_1:-70078698 Msa0568480:CDS
TTGTCGTGTAAAGAAACGTG+TGG 0.671845 4_1:-70077845 Msa0568480:CDS
CAAGACATTGAGTACTGATG+TGG 0.685676 4_1:-70078724 Msa0568480:CDS
TTCCTCCAAAGCTAGAAGTG+AGG 0.687037 4_1:+70079271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTAAAATTAGAGA+CGG - chr4_1:70077817-70077836 Msa0568480:CDS 10.0%
!! TGTTTCATATATATATATAT+AGG - chr4_1:70078060-70078079 Msa0568480:intron 10.0%
!! GTTTCATATATATATATATA+GGG - chr4_1:70078061-70078080 Msa0568480:intron 10.0%
!! ATAAAAATTAAAATTAGAGA+CGG - chr4_1:70077817-70077836 Msa0568480:CDS 10.0%
!! TGTTTCATATATATATATAT+AGG - chr4_1:70078060-70078079 Msa0568480:intron 10.0%
!! GTTTCATATATATATATATA+GGG - chr4_1:70078061-70078080 Msa0568480:intron 10.0%
!! TCATATAATTAAAGAAGAAA+GGG - chr4_1:70077411-70077430 Msa0568480:three_prime_UTR 15.0%
!! TATATCAACTAAAAATTCAA+GGG - chr4_1:70078332-70078351 Msa0568480:intron 15.0%
!! GATGAAAAAAATAATAATGA+AGG + chr4_1:70078709-70078728 None:intergenic 15.0%
!!! ATGTTTTCTACTAATATTAA+AGG - chr4_1:70079307-70079326 Msa0568480:CDS 15.0%
!! TCATATAATTAAAGAAGAAA+GGG - chr4_1:70077411-70077430 Msa0568480:three_prime_UTR 15.0%
!! TATATCAACTAAAAATTCAA+GGG - chr4_1:70078332-70078351 Msa0568480:intron 15.0%
!! GATGAAAAAAATAATAATGA+AGG + chr4_1:70078709-70078728 None:intergenic 15.0%
!!! ATGTTTTCTACTAATATTAA+AGG - chr4_1:70079307-70079326 Msa0568480:CDS 15.0%
!! CTTTCTTCTTTAATTATATG+AGG + chr4_1:70077412-70077431 None:intergenic 20.0%
!! CTCATATAATTAAAGAAGAA+AGG - chr4_1:70077410-70077429 Msa0568480:three_prime_UTR 20.0%
!! ACATCAAATTTGGTAAAATA+TGG + chr4_1:70077862-70077881 None:intergenic 20.0%
!! AAAATAAATTGAAGTAGCAA+CGG + chr4_1:70077944-70077963 None:intergenic 20.0%
!! TATATATATAGATTGTCTGA+CGG - chr4_1:70078025-70078044 Msa0568480:intron 20.0%
!! ATATATATATAGGGCAATAT+TGG - chr4_1:70078070-70078089 Msa0568480:intron 20.0%
!! TATATATATAGGGCAATATT+GGG - chr4_1:70078071-70078090 Msa0568480:intron 20.0%
!! AATAATAGTGGTAAAAGAAA+TGG - chr4_1:70078119-70078138 Msa0568480:intron 20.0%
!! ATGAAAATGAAGAAAATGAA+GGG - chr4_1:70078182-70078201 Msa0568480:intron 20.0%
!!! AATTTTTAGTTGATATACCT+GGG + chr4_1:70078329-70078348 None:intergenic 20.0%
!! GTATATCAACTAAAAATTCA+AGG - chr4_1:70078331-70078350 Msa0568480:intron 20.0%
!! AATAATTGTCACATTTCATT+TGG - chr4_1:70078400-70078419 Msa0568480:intron 20.0%
!! AATAATAATGAAGGAAAGAA+GGG + chr4_1:70078700-70078719 None:intergenic 20.0%
!! AAATAATAATGAAGGAAAGA+AGG + chr4_1:70078701-70078720 None:intergenic 20.0%
!! ATATACTCTATAACATTTGA+GGG + chr4_1:70078905-70078924 None:intergenic 20.0%
!! TATATACTCTATAACATTTG+AGG + chr4_1:70078906-70078925 None:intergenic 20.0%
!!! ATTAATTCTTTGTGTTTTGA+AGG - chr4_1:70078983-70079002 Msa0568480:intron 20.0%
!!! GTTTTTAACGTACTTTATTT+TGG - chr4_1:70079010-70079029 Msa0568480:intron 20.0%
!! ATTATATGAGACAATTAACT+TGG + chr4_1:70079051-70079070 None:intergenic 20.0%
!! GTGAAATTGAAAAATGTATT+TGG - chr4_1:70079380-70079399 Msa0568480:CDS 20.0%
!!! TTCAAGTTTTTATTTAGTCT+TGG - chr4_1:70079454-70079473 Msa0568480:CDS 20.0%
!! CTTTCTTCTTTAATTATATG+AGG + chr4_1:70077412-70077431 None:intergenic 20.0%
!! CTCATATAATTAAAGAAGAA+AGG - chr4_1:70077410-70077429 Msa0568480:three_prime_UTR 20.0%
!! ACATCAAATTTGGTAAAATA+TGG + chr4_1:70077862-70077881 None:intergenic 20.0%
!! AAAATAAATTGAAGTAGCAA+CGG + chr4_1:70077944-70077963 None:intergenic 20.0%
!! TATATATATAGATTGTCTGA+CGG - chr4_1:70078025-70078044 Msa0568480:intron 20.0%
!! ATATATATATAGGGCAATAT+TGG - chr4_1:70078070-70078089 Msa0568480:intron 20.0%
!! TATATATATAGGGCAATATT+GGG - chr4_1:70078071-70078090 Msa0568480:intron 20.0%
!! AATAATAGTGGTAAAAGAAA+TGG - chr4_1:70078119-70078138 Msa0568480:intron 20.0%
!! ATGAAAATGAAGAAAATGAA+GGG - chr4_1:70078182-70078201 Msa0568480:intron 20.0%
!!! AATTTTTAGTTGATATACCT+GGG + chr4_1:70078329-70078348 None:intergenic 20.0%
!! GTATATCAACTAAAAATTCA+AGG - chr4_1:70078331-70078350 Msa0568480:intron 20.0%
!! AATAATTGTCACATTTCATT+TGG - chr4_1:70078400-70078419 Msa0568480:intron 20.0%
!! AATAATAATGAAGGAAAGAA+GGG + chr4_1:70078700-70078719 None:intergenic 20.0%
!! AAATAATAATGAAGGAAAGA+AGG + chr4_1:70078701-70078720 None:intergenic 20.0%
!! ATATACTCTATAACATTTGA+GGG + chr4_1:70078905-70078924 None:intergenic 20.0%
!! TATATACTCTATAACATTTG+AGG + chr4_1:70078906-70078925 None:intergenic 20.0%
!!! ATTAATTCTTTGTGTTTTGA+AGG - chr4_1:70078983-70079002 Msa0568480:intron 20.0%
!!! GTTTTTAACGTACTTTATTT+TGG - chr4_1:70079010-70079029 Msa0568480:intron 20.0%
!! ATTATATGAGACAATTAACT+TGG + chr4_1:70079051-70079070 None:intergenic 20.0%
!! GTGAAATTGAAAAATGTATT+TGG - chr4_1:70079380-70079399 Msa0568480:CDS 20.0%
!!! TTCAAGTTTTTATTTAGTCT+TGG - chr4_1:70079454-70079473 Msa0568480:CDS 20.0%
!!! TTCTTTTGATTTTTGAGGAT+TGG + chr4_1:70077669-70077688 None:intergenic 25.0%
!!! AGGTATTCTTTTGATTTTTG+AGG + chr4_1:70077674-70077693 None:intergenic 25.0%
! GAGACGGAAAAATTAATATT+TGG - chr4_1:70077833-70077852 Msa0568480:CDS 25.0%
! ATATATATAGATTGTCTGAC+GGG - chr4_1:70078026-70078045 Msa0568480:intron 25.0%
! AGTAATTGCATGAATAATAG+TGG - chr4_1:70078107-70078126 Msa0568480:intron 25.0%
! AGATCATCATGATAATCATT+TGG - chr4_1:70078145-70078164 Msa0568480:intron 25.0%
! GATCATCATGATAATCATTT+GGG - chr4_1:70078146-70078165 Msa0568480:intron 25.0%
! ATCATCATGATAATCATTTG+GGG - chr4_1:70078147-70078166 Msa0568480:intron 25.0%
!! CTTCATTTTCTTCATTTTCA+TGG + chr4_1:70078183-70078202 None:intergenic 25.0%
! CATGAAAATGAAGAAAATGA+AGG - chr4_1:70078181-70078200 Msa0568480:intron 25.0%
!!! GAATTTTTAGTTGATATACC+TGG + chr4_1:70078330-70078349 None:intergenic 25.0%
! TACTGTAATATTTAGAGGTA+CGG + chr4_1:70078495-70078514 None:intergenic 25.0%
! ATGGATACTGTAATATTTAG+AGG + chr4_1:70078500-70078519 None:intergenic 25.0%
! ATTACAGTATCCATGAAAAA+TGG - chr4_1:70078506-70078525 Msa0568480:intron 25.0%
! ATGGTCAAATGTAGTTATTA+TGG - chr4_1:70078525-70078544 Msa0568480:intron 25.0%
! TGGTCAAATGTAGTTATTAT+GGG - chr4_1:70078526-70078545 Msa0568480:intron 25.0%
! AGAAAAATAGCATCAAGAAT+GGG + chr4_1:70078627-70078646 None:intergenic 25.0%
! TAGAAAAATAGCATCAAGAA+TGG + chr4_1:70078628-70078647 None:intergenic 25.0%
!!! ACTGATTAGCTTTAATTTAC+TGG - chr4_1:70078732-70078751 Msa0568480:CDS 25.0%
!! ATATGCAAAAGAAACTTGTT+CGG - chr4_1:70078825-70078844 Msa0568480:CDS 25.0%
! TCTACTAATATTAAAGGTCT+AGG - chr4_1:70079313-70079332 Msa0568480:CDS 25.0%
! AAGATCAAATAAGTACAGAA+TGG - chr4_1:70079356-70079375 Msa0568480:CDS 25.0%
!!! TTCTTTTGATTTTTGAGGAT+TGG + chr4_1:70077669-70077688 None:intergenic 25.0%
!!! AGGTATTCTTTTGATTTTTG+AGG + chr4_1:70077674-70077693 None:intergenic 25.0%
! GAGACGGAAAAATTAATATT+TGG - chr4_1:70077833-70077852 Msa0568480:CDS 25.0%
! ATATATATAGATTGTCTGAC+GGG - chr4_1:70078026-70078045 Msa0568480:intron 25.0%
! AGTAATTGCATGAATAATAG+TGG - chr4_1:70078107-70078126 Msa0568480:intron 25.0%
! AGATCATCATGATAATCATT+TGG - chr4_1:70078145-70078164 Msa0568480:intron 25.0%
! GATCATCATGATAATCATTT+GGG - chr4_1:70078146-70078165 Msa0568480:intron 25.0%
! ATCATCATGATAATCATTTG+GGG - chr4_1:70078147-70078166 Msa0568480:intron 25.0%
!! CTTCATTTTCTTCATTTTCA+TGG + chr4_1:70078183-70078202 None:intergenic 25.0%
! CATGAAAATGAAGAAAATGA+AGG - chr4_1:70078181-70078200 Msa0568480:intron 25.0%
!!! GAATTTTTAGTTGATATACC+TGG + chr4_1:70078330-70078349 None:intergenic 25.0%
! TACTGTAATATTTAGAGGTA+CGG + chr4_1:70078495-70078514 None:intergenic 25.0%
! ATGGATACTGTAATATTTAG+AGG + chr4_1:70078500-70078519 None:intergenic 25.0%
! ATTACAGTATCCATGAAAAA+TGG - chr4_1:70078506-70078525 Msa0568480:intron 25.0%
! ATGGTCAAATGTAGTTATTA+TGG - chr4_1:70078525-70078544 Msa0568480:intron 25.0%
! TGGTCAAATGTAGTTATTAT+GGG - chr4_1:70078526-70078545 Msa0568480:intron 25.0%
! AGAAAAATAGCATCAAGAAT+GGG + chr4_1:70078627-70078646 None:intergenic 25.0%
! TAGAAAAATAGCATCAAGAA+TGG + chr4_1:70078628-70078647 None:intergenic 25.0%
!!! ACTGATTAGCTTTAATTTAC+TGG - chr4_1:70078732-70078751 Msa0568480:CDS 25.0%
!! ATATGCAAAAGAAACTTGTT+CGG - chr4_1:70078825-70078844 Msa0568480:CDS 25.0%
! TCTACTAATATTAAAGGTCT+AGG - chr4_1:70079313-70079332 Msa0568480:CDS 25.0%
! AAGATCAAATAAGTACAGAA+TGG - chr4_1:70079356-70079375 Msa0568480:CDS 25.0%
GAGTTTCTCAATGAAAAAGT+TGG + chr4_1:70077390-70077409 None:intergenic 30.0%
ATTTACAATGGATCTATGCA+AGG + chr4_1:70077732-70077751 None:intergenic 30.0%
ATAGATCCATTGTAAATCCA+TGG - chr4_1:70077735-70077754 Msa0568480:CDS 30.0%
CTAATGTAATCTCTAAGTGT+TGG + chr4_1:70077887-70077906 None:intergenic 30.0%
TCATCATGATAATCATTTGG+GGG - chr4_1:70078148-70078167 Msa0568480:intron 30.0%
!! CTACATTTGACCATTTTTCA+TGG + chr4_1:70078519-70078538 None:intergenic 30.0%
GGTCAAATGTAGTTATTATG+GGG - chr4_1:70078527-70078546 Msa0568480:intron 30.0%
! GAGAGAGAACATATGTATTT+TGG + chr4_1:70078666-70078685 None:intergenic 30.0%
!! TAGCTTTAATTTACTGGCTT+CGG - chr4_1:70078738-70078757 Msa0568480:CDS 30.0%
AATAGCCATACATCACATAA+AGG + chr4_1:70078962-70078981 None:intergenic 30.0%
ATGGTAATAACCACATATGA+AGG - chr4_1:70079163-70079182 Msa0568480:intron 30.0%
CTCAATCTGACAATTTCTTA+TGG - chr4_1:70079230-70079249 Msa0568480:CDS 30.0%
TTGAAAAATCAGCCATCATA+TGG + chr4_1:70079439-70079458 None:intergenic 30.0%
!! TTTTGATTGAAACACGATAC+TGG + chr4_1:70079514-70079533 None:intergenic 30.0%
CAAGGCAAAACTATAAAGTA+TGG + chr4_1:70079606-70079625 None:intergenic 30.0%
GAGTTTCTCAATGAAAAAGT+TGG + chr4_1:70077390-70077409 None:intergenic 30.0%
ATTTACAATGGATCTATGCA+AGG + chr4_1:70077732-70077751 None:intergenic 30.0%
ATAGATCCATTGTAAATCCA+TGG - chr4_1:70077735-70077754 Msa0568480:CDS 30.0%
CTAATGTAATCTCTAAGTGT+TGG + chr4_1:70077887-70077906 None:intergenic 30.0%
TCATCATGATAATCATTTGG+GGG - chr4_1:70078148-70078167 Msa0568480:intron 30.0%
!! CTACATTTGACCATTTTTCA+TGG + chr4_1:70078519-70078538 None:intergenic 30.0%
GGTCAAATGTAGTTATTATG+GGG - chr4_1:70078527-70078546 Msa0568480:intron 30.0%
! GAGAGAGAACATATGTATTT+TGG + chr4_1:70078666-70078685 None:intergenic 30.0%
!! TAGCTTTAATTTACTGGCTT+CGG - chr4_1:70078738-70078757 Msa0568480:CDS 30.0%
AATAGCCATACATCACATAA+AGG + chr4_1:70078962-70078981 None:intergenic 30.0%
ATGGTAATAACCACATATGA+AGG - chr4_1:70079163-70079182 Msa0568480:intron 30.0%
CTCAATCTGACAATTTCTTA+TGG - chr4_1:70079230-70079249 Msa0568480:CDS 30.0%
TTGAAAAATCAGCCATCATA+TGG + chr4_1:70079439-70079458 None:intergenic 30.0%
!! TTTTGATTGAAACACGATAC+TGG + chr4_1:70079514-70079533 None:intergenic 30.0%
CAAGGCAAAACTATAAAGTA+TGG + chr4_1:70079606-70079625 None:intergenic 30.0%
CGTTGACAACAACTTATTTG+AGG - chr4_1:70077478-70077497 Msa0568480:three_prime_UTR 35.0%
TGACAACAACTTATTTGAGG+AGG - chr4_1:70077481-70077500 Msa0568480:three_prime_UTR 35.0%
!! AAAGTTAGGTTTGTTGGGAA+AGG + chr4_1:70077539-70077558 None:intergenic 35.0%
! AAGGGAAAGTTAGGTTTGTT+GGG + chr4_1:70077544-70077563 None:intergenic 35.0%
AAACCTAACTTTCCCTTCTT+TGG - chr4_1:70077547-70077566 Msa0568480:three_prime_UTR 35.0%
AACCTAACTTTCCCTTCTTT+GGG - chr4_1:70077548-70077567 Msa0568480:three_prime_UTR 35.0%
ATTGATTGCAACCCAAAGAA+GGG + chr4_1:70077562-70077581 None:intergenic 35.0%
AGATGTAAGTGAAGAAGCTA+TGG + chr4_1:70077603-70077622 None:intergenic 35.0%
!!! GAATTGTTTTTGTCTCACCA+TGG + chr4_1:70077755-70077774 None:intergenic 35.0%
! AGTGTTGGAGACATCAAATT+TGG + chr4_1:70077872-70077891 None:intergenic 35.0%
ATATATAGGGCAATATTGGG+AGG - chr4_1:70078074-70078093 Msa0568480:intron 35.0%
AATGTCTTGAAGCAAAACCT+AGG + chr4_1:70078227-70078246 None:intergenic 35.0%
CAAATGTAGTTATTATGGGG+TGG - chr4_1:70078530-70078549 Msa0568480:intron 35.0%
!! AGCTTTAATTTACTGGCTTC+GGG - chr4_1:70078739-70078758 Msa0568480:CDS 35.0%
TTGCATATGCATGTAGTGAA+AGG + chr4_1:70078813-70078832 None:intergenic 35.0%
TATGTGGTTATTACCATCCT+TGG + chr4_1:70079160-70079179 None:intergenic 35.0%
TACATGTCTTCCTTCATATG+TGG + chr4_1:70079176-70079195 None:intergenic 35.0%
TTGAGAGTCTTCAAGATCAT+TGG + chr4_1:70079209-70079228 None:intergenic 35.0%
CGTTGACAACAACTTATTTG+AGG - chr4_1:70077478-70077497 Msa0568480:three_prime_UTR 35.0%
TGACAACAACTTATTTGAGG+AGG - chr4_1:70077481-70077500 Msa0568480:three_prime_UTR 35.0%
!! AAAGTTAGGTTTGTTGGGAA+AGG + chr4_1:70077539-70077558 None:intergenic 35.0%
! AAGGGAAAGTTAGGTTTGTT+GGG + chr4_1:70077544-70077563 None:intergenic 35.0%
AAACCTAACTTTCCCTTCTT+TGG - chr4_1:70077547-70077566 Msa0568480:three_prime_UTR 35.0%
AACCTAACTTTCCCTTCTTT+GGG - chr4_1:70077548-70077567 Msa0568480:three_prime_UTR 35.0%
ATTGATTGCAACCCAAAGAA+GGG + chr4_1:70077562-70077581 None:intergenic 35.0%
AGATGTAAGTGAAGAAGCTA+TGG + chr4_1:70077603-70077622 None:intergenic 35.0%
!!! GAATTGTTTTTGTCTCACCA+TGG + chr4_1:70077755-70077774 None:intergenic 35.0%
! AGTGTTGGAGACATCAAATT+TGG + chr4_1:70077872-70077891 None:intergenic 35.0%
ATATATAGGGCAATATTGGG+AGG - chr4_1:70078074-70078093 Msa0568480:intron 35.0%
AATGTCTTGAAGCAAAACCT+AGG + chr4_1:70078227-70078246 None:intergenic 35.0%
CAAATGTAGTTATTATGGGG+TGG - chr4_1:70078530-70078549 Msa0568480:intron 35.0%
!! AGCTTTAATTTACTGGCTTC+GGG - chr4_1:70078739-70078758 Msa0568480:CDS 35.0%
TTGCATATGCATGTAGTGAA+AGG + chr4_1:70078813-70078832 None:intergenic 35.0%
TATGTGGTTATTACCATCCT+TGG + chr4_1:70079160-70079179 None:intergenic 35.0%
TACATGTCTTCCTTCATATG+TGG + chr4_1:70079176-70079195 None:intergenic 35.0%
TTGAGAGTCTTCAAGATCAT+TGG + chr4_1:70079209-70079228 None:intergenic 35.0%
CAACAACTTATTTGAGGAGG+AGG - chr4_1:70077484-70077503 Msa0568480:three_prime_UTR 40.0%
GATCAGATTCCCACACAAAT+GGG - chr4_1:70077506-70077525 Msa0568480:three_prime_UTR 40.0%
ATCAGATTCCCACACAAATG+GGG - chr4_1:70077507-70077526 Msa0568480:three_prime_UTR 40.0%
GAAGGGAAAGTTAGGTTTGT+TGG + chr4_1:70077545-70077564 None:intergenic 40.0%
AACCCAAAGAAGGGAAAGTT+AGG + chr4_1:70077553-70077572 None:intergenic 40.0%
GATTGATTGCAACCCAAAGA+AGG + chr4_1:70077563-70077582 None:intergenic 40.0%
TGAAGAAGCTATGGAACTGA+AGG + chr4_1:70077594-70077613 None:intergenic 40.0%
!! TTGAGGATTGGTTGTGAGTA+GGG + chr4_1:70077657-70077676 None:intergenic 40.0%
!! TTTGAGGATTGGTTGTGAGT+AGG + chr4_1:70077658-70077677 None:intergenic 40.0%
!! GAATACCTCACTTCTAGCTT+TGG - chr4_1:70077686-70077705 Msa0568480:three_prime_UTR 40.0%
GATCTATGCAAGGATAGGAA+TGG + chr4_1:70077722-70077741 None:intergenic 40.0%
CAATGGATCTATGCAAGGAT+AGG + chr4_1:70077727-70077746 None:intergenic 40.0%
GTCTCACCATGGATTTACAA+TGG + chr4_1:70077744-70077763 None:intergenic 40.0%
!! CAAGACATTGAGTACTGATG+TGG - chr4_1:70078238-70078257 Msa0568480:intron 40.0%
! TGTTGGATGATGGTTACAAG+TGG - chr4_1:70078264-70078283 Msa0568480:intron 40.0%
TAAAGAACACACAACATCCC+AGG - chr4_1:70078309-70078328 Msa0568480:intron 40.0%
ATGTAGTTATTATGGGGTGG+AGG - chr4_1:70078533-70078552 Msa0568480:intron 40.0%
GAATGGGACACAATGAATCA+AGG + chr4_1:70078611-70078630 None:intergenic 40.0%
TAATGAAGGAAAGAAGGGTG+TGG + chr4_1:70078695-70078714 None:intergenic 40.0%
!! TTAATTTACTGGCTTCGGGA+AGG - chr4_1:70078743-70078762 Msa0568480:CDS 40.0%
AGGAAAAGTGATCACATGTG+AGG + chr4_1:70078932-70078951 None:intergenic 40.0%
!! CACATGTGATCACTTTTCCT+AGG - chr4_1:70078932-70078951 Msa0568480:intron 40.0%
!! ATGTGATCACTTTTCCTAGG+TGG - chr4_1:70078935-70078954 Msa0568480:intron 40.0%
GTGGACCTTTATGTGATGTA+TGG - chr4_1:70078954-70078973 Msa0568480:intron 40.0%
GACAATTCTCTTGTGTGCAA+CGG + chr4_1:70079102-70079121 None:intergenic 40.0%
TTGTCGTGTAAAGAAACGTG+TGG - chr4_1:70079117-70079136 Msa0568480:intron 40.0%
GAGTCTTCAAGATCATTGGA+TGG + chr4_1:70079205-70079224 None:intergenic 40.0%
ATCATATGGTGTGCTTGGAA+GGG + chr4_1:70079425-70079444 None:intergenic 40.0%
CAACAACTTATTTGAGGAGG+AGG - chr4_1:70077484-70077503 Msa0568480:three_prime_UTR 40.0%
GATCAGATTCCCACACAAAT+GGG - chr4_1:70077506-70077525 Msa0568480:three_prime_UTR 40.0%
ATCAGATTCCCACACAAATG+GGG - chr4_1:70077507-70077526 Msa0568480:three_prime_UTR 40.0%
GAAGGGAAAGTTAGGTTTGT+TGG + chr4_1:70077545-70077564 None:intergenic 40.0%
AACCCAAAGAAGGGAAAGTT+AGG + chr4_1:70077553-70077572 None:intergenic 40.0%
GATTGATTGCAACCCAAAGA+AGG + chr4_1:70077563-70077582 None:intergenic 40.0%
TGAAGAAGCTATGGAACTGA+AGG + chr4_1:70077594-70077613 None:intergenic 40.0%
!! TTGAGGATTGGTTGTGAGTA+GGG + chr4_1:70077657-70077676 None:intergenic 40.0%
!! TTTGAGGATTGGTTGTGAGT+AGG + chr4_1:70077658-70077677 None:intergenic 40.0%
!! GAATACCTCACTTCTAGCTT+TGG - chr4_1:70077686-70077705 Msa0568480:three_prime_UTR 40.0%
GATCTATGCAAGGATAGGAA+TGG + chr4_1:70077722-70077741 None:intergenic 40.0%
CAATGGATCTATGCAAGGAT+AGG + chr4_1:70077727-70077746 None:intergenic 40.0%
GTCTCACCATGGATTTACAA+TGG + chr4_1:70077744-70077763 None:intergenic 40.0%
!! CAAGACATTGAGTACTGATG+TGG - chr4_1:70078238-70078257 Msa0568480:intron 40.0%
! TGTTGGATGATGGTTACAAG+TGG - chr4_1:70078264-70078283 Msa0568480:intron 40.0%
TAAAGAACACACAACATCCC+AGG - chr4_1:70078309-70078328 Msa0568480:intron 40.0%
ATGTAGTTATTATGGGGTGG+AGG - chr4_1:70078533-70078552 Msa0568480:intron 40.0%
GAATGGGACACAATGAATCA+AGG + chr4_1:70078611-70078630 None:intergenic 40.0%
TAATGAAGGAAAGAAGGGTG+TGG + chr4_1:70078695-70078714 None:intergenic 40.0%
!! TTAATTTACTGGCTTCGGGA+AGG - chr4_1:70078743-70078762 Msa0568480:CDS 40.0%
AGGAAAAGTGATCACATGTG+AGG + chr4_1:70078932-70078951 None:intergenic 40.0%
!! CACATGTGATCACTTTTCCT+AGG - chr4_1:70078932-70078951 Msa0568480:intron 40.0%
!! ATGTGATCACTTTTCCTAGG+TGG - chr4_1:70078935-70078954 Msa0568480:intron 40.0%
GTGGACCTTTATGTGATGTA+TGG - chr4_1:70078954-70078973 Msa0568480:intron 40.0%
GACAATTCTCTTGTGTGCAA+CGG + chr4_1:70079102-70079121 None:intergenic 40.0%
TTGTCGTGTAAAGAAACGTG+TGG - chr4_1:70079117-70079136 Msa0568480:intron 40.0%
GAGTCTTCAAGATCATTGGA+TGG + chr4_1:70079205-70079224 None:intergenic 40.0%
ATCATATGGTGTGCTTGGAA+GGG + chr4_1:70079425-70079444 None:intergenic 40.0%
! TCTAGAGCTAGCAAGAGGTT+AGG + chr4_1:70077360-70077379 None:intergenic 45.0%
!! AGCTTTCTAGAGCTAGCAAG+AGG + chr4_1:70077365-70077384 None:intergenic 45.0%
GGATCAGATTCCCACACAAA+TGG - chr4_1:70077505-70077524 Msa0568480:three_prime_UTR 45.0%
GGAATGAACCCCATTTGTGT+GGG + chr4_1:70077518-70077537 None:intergenic 45.0%
AGGAATGAACCCCATTTGTG+TGG + chr4_1:70077519-70077538 None:intergenic 45.0%
!! TACCTCACTTCTAGCTTTGG+AGG - chr4_1:70077689-70077708 Msa0568480:three_prime_UTR 45.0%
TTCCTCCAAAGCTAGAAGTG+AGG + chr4_1:70077694-70077713 None:intergenic 45.0%
GAAAGAAAGTGAGAGAGCCT+AGG - chr4_1:70078207-70078226 Msa0568480:intron 45.0%
!! GAGTACTGATGTGGATGTGT+TGG - chr4_1:70078247-70078266 Msa0568480:intron 45.0%
GATGTGGATGTGTTGGATGA+TGG - chr4_1:70078254-70078273 Msa0568480:intron 45.0%
! TGGATGATGGTTACAAGTGG+AGG - chr4_1:70078267-70078286 Msa0568480:intron 45.0%
GGTTACAAGTGGAGGAAGTA+TGG - chr4_1:70078275-70078294 Msa0568480:intron 45.0%
CATCACATAAAGGTCCACCT+AGG + chr4_1:70078952-70078971 None:intergenic 45.0%
CTTAGCTGAAGATCCAAGGA+TGG - chr4_1:70079144-70079163 Msa0568480:intron 45.0%
CATCATATGGTGTGCTTGGA+AGG + chr4_1:70079426-70079445 None:intergenic 45.0%
CTTCCAAGCACACCATATGA+TGG - chr4_1:70079424-70079443 Msa0568480:CDS 45.0%
!! CTTGGTGTTCTCTAGATGCA+TGG - chr4_1:70079472-70079491 Msa0568480:CDS 45.0%
! TCTAGAGCTAGCAAGAGGTT+AGG + chr4_1:70077360-70077379 None:intergenic 45.0%
!! AGCTTTCTAGAGCTAGCAAG+AGG + chr4_1:70077365-70077384 None:intergenic 45.0%
GGATCAGATTCCCACACAAA+TGG - chr4_1:70077505-70077524 Msa0568480:three_prime_UTR 45.0%
GGAATGAACCCCATTTGTGT+GGG + chr4_1:70077518-70077537 None:intergenic 45.0%
AGGAATGAACCCCATTTGTG+TGG + chr4_1:70077519-70077538 None:intergenic 45.0%
!! TACCTCACTTCTAGCTTTGG+AGG - chr4_1:70077689-70077708 Msa0568480:three_prime_UTR 45.0%
TTCCTCCAAAGCTAGAAGTG+AGG + chr4_1:70077694-70077713 None:intergenic 45.0%
GAAAGAAAGTGAGAGAGCCT+AGG - chr4_1:70078207-70078226 Msa0568480:intron 45.0%
!! GAGTACTGATGTGGATGTGT+TGG - chr4_1:70078247-70078266 Msa0568480:intron 45.0%
GATGTGGATGTGTTGGATGA+TGG - chr4_1:70078254-70078273 Msa0568480:intron 45.0%
! TGGATGATGGTTACAAGTGG+AGG - chr4_1:70078267-70078286 Msa0568480:intron 45.0%
GGTTACAAGTGGAGGAAGTA+TGG - chr4_1:70078275-70078294 Msa0568480:intron 45.0%
CATCACATAAAGGTCCACCT+AGG + chr4_1:70078952-70078971 None:intergenic 45.0%
CTTAGCTGAAGATCCAAGGA+TGG - chr4_1:70079144-70079163 Msa0568480:intron 45.0%
CATCATATGGTGTGCTTGGA+AGG + chr4_1:70079426-70079445 None:intergenic 45.0%
CTTCCAAGCACACCATATGA+TGG - chr4_1:70079424-70079443 Msa0568480:CDS 45.0%
!! CTTGGTGTTCTCTAGATGCA+TGG - chr4_1:70079472-70079491 Msa0568480:CDS 45.0%
!!! TTTTTATTTTTAACTTTTTT+TGG + chr4_1:70077804-70077823 None:intergenic 5.0%
!!! TTTTTATTTTTAACTTTTTT+TGG + chr4_1:70077804-70077823 None:intergenic 5.0%
! GGAAAGAAGGGTGTGGAGAT+TGG + chr4_1:70078688-70078707 None:intergenic 50.0%
AGCGCTTAGCTGAAGATCCA+AGG - chr4_1:70079140-70079159 Msa0568480:intron 50.0%
TATGGTGTGCTTGGAAGGGA+TGG + chr4_1:70079421-70079440 None:intergenic 50.0%
CAGCCATCATATGGTGTGCT+TGG + chr4_1:70079430-70079449 None:intergenic 50.0%
! GGAAAGAAGGGTGTGGAGAT+TGG + chr4_1:70078688-70078707 None:intergenic 50.0%
AGCGCTTAGCTGAAGATCCA+AGG - chr4_1:70079140-70079159 Msa0568480:intron 50.0%
TATGGTGTGCTTGGAAGGGA+TGG + chr4_1:70079421-70079440 None:intergenic 50.0%
CAGCCATCATATGGTGTGCT+TGG + chr4_1:70079430-70079449 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70077350 70079634 70077350 ID=Msa0568480;Name=Msa0568480
chr4_1 mRNA 70077350 70079634 70077350 ID=Msa0568480-mRNA-1;Parent=Msa0568480;Name=Msa0568480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=114|1|1|1|1|1|3|379|235
chr4_1 exon 70077350 70077894 70077350 ID=Msa0568480-mRNA-1:exon:23555;Parent=Msa0568480-mRNA-1
chr4_1 exon 70078654 70078902 70078654 ID=Msa0568480-mRNA-1:exon:23554;Parent=Msa0568480-mRNA-1
chr4_1 exon 70079228 70079634 70079228 ID=Msa0568480-mRNA-1:exon:23553;Parent=Msa0568480-mRNA-1
chr4_1 five_prime_UTR 70079521 70079634 70079521 ID=Msa0568480-mRNA-1:five_prime_utr;Parent=Msa0568480-mRNA-1
chr4_1 CDS 70079228 70079520 70079228 ID=Msa0568480-mRNA-1:cds;Parent=Msa0568480-mRNA-1
chr4_1 CDS 70078654 70078902 70078654 ID=Msa0568480-mRNA-1:cds;Parent=Msa0568480-mRNA-1
chr4_1 CDS 70077729 70077894 70077729 ID=Msa0568480-mRNA-1:cds;Parent=Msa0568480-mRNA-1
chr4_1 three_prime_UTR 70077350 70077728 70077350 ID=Msa0568480-mRNA-1:three_prime_utr;Parent=Msa0568480-mRNA-1
Gene Sequence

>Msa0568480

ATGTCTCAAATTATCGTTGACAACAACTTATTTGAGGAGGAGGATCAGATTCCCACACAAATGGGGTTCATTCCTTTCCCAACAAACCTAACTTTCCCTTCTTTGGGTTGCAATCAATCTTTGAAAGCCTTCAGTTCCATAGCTTCTTCACTTACATCTGAATCAGATTCTACATCAAATCTAACACAAACCCTACTCACAACCAATCCTCAAAAATCAAAAGAATACCTCACTTCTAGCTTTGGAGGAAGTACTCCATTCCTATCCTTGCATAGATCCATTGTAAATCCATGGGCAATATTGGGAGGAGAAGTAATAAGTAATTGCATGAATAATAGTGGTAAAAGAAATGGAGTAGATCATCATGATAATCATTTGGGGGTTTCTGCTACCATGAAAATGAAGAAAATGAAGGGAAGAAAGAAAGTGAGAGAGCCTAGGTTTTGCTTCAAGACATTGAGTACTGATGTGGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTATGGACAAAAAGTTGTAAAGAACACACAACATCCCAGAAGCTATTACCGTTGCACACAAGAGAATTGTCGTGTAAAGAAACGTGTGGAGCGCTTAGCTGAAGATCCAAGGATGGTAATAACCACATATGAAGGAAGACATGTACATTCTCCATCCAATGATCTTGAAGACTCTCAAACTCAATCTGACAATTTCTTATGGTAG
Protein sequence

>Msa0568480

MSQIIVDNNLFEEEDQIPTQMGFIPFPTNLTFPSLGCNQSLKAFSSIASSLTSESDSTSNLTQTLLTTNPQKSKEYLTSSFGGSTPFLSLHRSIVNPWAILGGEVISNCMNNSGKRNGVDHHDNHLGVSATMKMKKMKGRKKVREPRFCFKTLSTDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQENCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLEDSQTQSDNFLW*