Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363360 | XP_027186526.1 | 55.952 | 504 | 148 | 6 | 1 | 432 | 240 | 741 | 2.98e-166 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363360 | A0A3Q7XRU9 | 55.952 | 504 | 148 | 6 | 1 | 432 | 240 | 741 | 1.43e-166 | 496 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004640 | Msa0363360 | 0.807615 | 4.635300e-50 | -8.615850e-47 |
| Msa0015390 | Msa0363360 | 0.806574 | 7.700830e-50 | -8.615850e-47 |
| Msa0017510 | Msa0363360 | 0.846511 | 2.074638e-59 | -8.615850e-47 |
| Msa0028640 | Msa0363360 | 0.805585 | 1.243432e-49 | -8.615850e-47 |
| Msa0045770 | Msa0363360 | 0.827870 | 1.231737e-54 | -8.615850e-47 |
| Msa0045790 | Msa0363360 | 0.803406 | 3.539435e-49 | -8.615850e-47 |
| Msa0046100 | Msa0363360 | 0.803107 | 4.082625e-49 | -8.615850e-47 |
| Msa0046160 | Msa0363360 | 0.805079 | 1.587291e-49 | -8.615850e-47 |
| Msa0047030 | Msa0363360 | 0.801077 | 1.067474e-48 | -8.615850e-47 |
| Msa0068680 | Msa0363360 | 0.800560 | 1.360745e-48 | -8.615850e-47 |
| Msa0073530 | Msa0363360 | 0.820189 | 7.824003e-53 | -8.615850e-47 |
| Msa0087470 | Msa0363360 | 0.809516 | 1.820347e-50 | -8.615850e-47 |
| Msa0112750 | Msa0363360 | 0.820357 | 7.160065e-53 | -8.615850e-47 |
| Msa0116770 | Msa0363360 | 0.809560 | 1.781174e-50 | -8.615850e-47 |
| Msa0119960 | Msa0363360 | 0.808787 | 2.608300e-50 | -8.615850e-47 |
| Msa0142200 | Msa0363360 | 0.807084 | 6.007396e-50 | -8.615850e-47 |
| Msa0157290 | Msa0363360 | 0.846053 | 2.765494e-59 | -8.615850e-47 |
| Msa0165210 | Msa0363360 | 0.818682 | 1.725854e-52 | -8.615850e-47 |
| Msa0169860 | Msa0363360 | 0.810710 | 1.006611e-50 | -8.615850e-47 |
| Msa0197660 | Msa0363360 | 0.825557 | 4.392291e-54 | -8.615850e-47 |
| Msa0212990 | Msa0363360 | 0.810457 | 1.141541e-50 | -8.615850e-47 |
| Msa0213520 | Msa0363360 | 0.822670 | 2.091702e-53 | -8.615850e-47 |
| Msa0218810 | Msa0363360 | 0.811697 | 6.148644e-51 | -8.615850e-47 |
| Msa0227470 | Msa0363360 | 0.815320 | 9.818925e-52 | -8.615850e-47 |
| Msa0233300 | Msa0363360 | 0.803963 | 2.712639e-49 | -8.615850e-47 |
| Msa0237310 | Msa0363360 | 0.800971 | 1.121965e-48 | -8.615850e-47 |
| Msa0239800 | Msa0363360 | 0.814112 | 1.818844e-51 | -8.615850e-47 |
| Msa0243100 | Msa0363360 | 0.802075 | 6.661831e-49 | -8.615850e-47 |
| Msa0244860 | Msa0363360 | 0.808845 | 2.534701e-50 | -8.615850e-47 |
| Msa0248970 | Msa0363360 | 0.803846 | 2.868510e-49 | -8.615850e-47 |
| Msa0262510 | Msa0363360 | 0.811428 | 7.034972e-51 | -8.615850e-47 |
| Msa0264150 | Msa0363360 | 0.809044 | 2.297912e-50 | -8.615850e-47 |
| Msa0274730 | Msa0363360 | 0.801757 | 7.744394e-49 | -8.615850e-47 |
| Msa0276920 | Msa0363360 | 0.805726 | 1.161725e-49 | -8.615850e-47 |
| Msa0277820 | Msa0363360 | 0.804832 | 1.787904e-49 | -8.615850e-47 |
| Msa0283450 | Msa0363360 | 0.811821 | 5.778854e-51 | -8.615850e-47 |
| Msa0285450 | Msa0363360 | 0.800988 | 1.113273e-48 | -8.615850e-47 |
| Msa0287650 | Msa0363360 | 0.804670 | 1.931983e-49 | -8.615850e-47 |
| Msa0292930 | Msa0363360 | 0.804301 | 2.306903e-49 | -8.615850e-47 |
| Msa0302170 | Msa0363360 | 0.814024 | 1.901229e-51 | -8.615850e-47 |
| Msa0315530 | Msa0363360 | 0.810255 | 1.262680e-50 | -8.615850e-47 |
| Msa0317510 | Msa0363360 | 0.824559 | 7.557214e-54 | -8.615850e-47 |
| Msa0330340 | Msa0363360 | 0.812150 | 4.899706e-51 | -8.615850e-47 |
| Msa0332000 | Msa0363360 | 0.804274 | 2.337062e-49 | -8.615850e-47 |
| Msa0333930 | Msa0363360 | 0.808385 | 3.179261e-50 | -8.615850e-47 |
| Msa0358890 | Msa0363360 | 0.818841 | 1.588086e-52 | -8.615850e-47 |
| Msa0363360 | Msa0376350 | 0.802740 | 4.859869e-49 | -8.615850e-47 |
| Msa0363360 | Msa0388960 | 0.803948 | 2.732495e-49 | -8.615850e-47 |
| Msa0363360 | Msa0389340 | 0.801364 | 9.322371e-49 | -8.615850e-47 |
| Msa0363360 | Msa0392510 | 0.800859 | 1.182445e-48 | -8.615850e-47 |
| Msa0363360 | Msa0399300 | 0.802179 | 6.342811e-49 | -8.615850e-47 |
| Msa0363360 | Msa0414230 | 0.802977 | 4.343056e-49 | -8.615850e-47 |
| Msa0363360 | Msa0417880 | 0.806491 | 8.016323e-50 | -8.615850e-47 |
| Msa0363360 | Msa0424790 | 0.802743 | 4.853764e-49 | -8.615850e-47 |
| Msa0363360 | Msa0432300 | 0.810806 | 9.598158e-51 | -8.615850e-47 |
| Msa0363360 | Msa0437560 | 0.813480 | 2.505851e-51 | -8.615850e-47 |
| Msa0363360 | Msa0439970 | 0.808690 | 2.735938e-50 | -8.615850e-47 |
| Msa0363360 | Msa0443260 | 0.813977 | 1.947875e-51 | -8.615850e-47 |
| Msa0363360 | Msa0452920 | 0.818433 | 1.964858e-52 | -8.615850e-47 |
| Msa0363360 | Msa0461690 | 0.838126 | 3.460198e-57 | -8.615850e-47 |
| Msa0363360 | Msa0461720 | 0.836722 | 7.919754e-57 | -8.615850e-47 |
| Msa0363360 | Msa0479170 | 0.804623 | 1.976859e-49 | -8.615850e-47 |
| Msa0363360 | Msa0484650 | 0.800511 | 1.393000e-48 | -8.615850e-47 |
| Msa0363360 | Msa0484780 | 0.860234 | 2.380224e-63 | -8.615850e-47 |
| Msa0363360 | Msa0495320 | 0.813533 | 2.439444e-51 | -8.615850e-47 |
| Msa0363360 | Msa0498060 | 0.807379 | 5.202718e-50 | -8.615850e-47 |
| Msa0363360 | Msa0503580 | 0.804432 | 2.166245e-49 | -8.615850e-47 |
| Msa0363360 | Msa0507680 | 0.800831 | 1.198419e-48 | -8.615850e-47 |
| Msa0363360 | Msa0512900 | 0.843364 | 1.466121e-58 | -8.615850e-47 |
| Msa0363360 | Msa0516170 | 0.806752 | 7.062901e-50 | -8.615850e-47 |
| Msa0363360 | Msa0523460 | 0.803086 | 4.123782e-49 | -8.615850e-47 |
| Msa0363360 | Msa0531180 | 0.809757 | 1.616241e-50 | -8.615850e-47 |
| Msa0363360 | Msa0532350 | 0.804820 | 1.798145e-49 | -8.615850e-47 |
| Msa0363360 | Msa0546680 | 0.805559 | 1.259019e-49 | -8.615850e-47 |
| Msa0363360 | Msa0616160 | 0.801583 | 8.407371e-49 | -8.615850e-47 |
| Msa0363360 | Msa0623150 | 0.805361 | 1.385317e-49 | -8.615850e-47 |
| Msa0363360 | Msa0626410 | 0.801445 | 8.973942e-49 | -8.615850e-47 |
| Msa0363360 | Msa0657970 | 0.831738 | 1.407666e-55 | -8.615850e-47 |
| Msa0363360 | Msa0661650 | 0.803854 | 2.857133e-49 | -8.615850e-47 |
| Msa0363360 | Msa0667050 | 0.805875 | 1.080752e-49 | -8.615850e-47 |
| Msa0363360 | Msa0669320 | 0.800194 | 1.615537e-48 | -8.615850e-47 |
| Msa0363360 | Msa0677410 | 0.805082 | 1.585270e-49 | -8.615850e-47 |
| Msa0363360 | Msa0693380 | 0.824545 | 7.618118e-54 | -8.615850e-47 |
| Msa0363360 | Msa0696640 | 0.815233 | 1.026634e-51 | -8.615850e-47 |
| Msa0363360 | Msa0697060 | 0.813219 | 2.859557e-51 | -8.615850e-47 |
| Msa0363360 | Msa0715470 | 0.800406 | 1.462743e-48 | -8.615850e-47 |
| Msa0363360 | Msa0717890 | 0.837710 | 4.425959e-57 | -8.615850e-47 |
| Msa0363360 | Msa0727710 | 0.822739 | 2.016516e-53 | -8.615850e-47 |
| Msa0363360 | Msa0760130 | 0.800687 | 1.282016e-48 | -8.615850e-47 |
| Msa0363360 | Msa0766630 | 0.812479 | 4.153490e-51 | -8.615850e-47 |
| Msa0363360 | Msa0816710 | 0.800441 | 1.439108e-48 | -8.615850e-47 |
| Msa0363360 | Msa0824660 | 0.824359 | 8.426495e-54 | -8.615850e-47 |
| Msa0363360 | Msa0863930 | 0.808546 | 2.937591e-50 | -8.615850e-47 |
| Msa0363360 | Msa0880140 | 0.844210 | 8.703908e-59 | -8.615850e-47 |
| Msa0363360 | Msa0909120 | 0.829370 | 5.345741e-55 | -8.615850e-47 |
| Msa0363360 | Msa0954550 | 0.803699 | 3.076811e-49 | -8.615850e-47 |
| Msa0363360 | Msa0966400 | 0.801047 | 1.082738e-48 | -8.615850e-47 |
| Msa0363360 | Msa0969450 | 0.805747 | 1.149677e-49 | -8.615850e-47 |
| Msa0363360 | Msa0969520 | 0.804501 | 2.095968e-49 | -8.615850e-47 |
| Msa0363360 | Msa0979010 | 0.802529 | 5.371960e-49 | -8.615850e-47 |
| Msa0363360 | Msa0990350 | 0.805149 | 1.534657e-49 | -8.615850e-47 |
| Msa0363360 | Msa1004840 | 0.824778 | 6.713280e-54 | -8.615850e-47 |
| Msa0363360 | Msa1016320 | 0.803449 | 3.466991e-49 | -8.615850e-47 |
| Msa0363360 | Msa1019000 | 0.819635 | 1.047476e-52 | -8.615850e-47 |
| Msa0363360 | Msa1030970 | 0.825473 | 4.598940e-54 | -8.615850e-47 |
| Msa0363360 | Msa1031930 | 0.817510 | 3.177274e-52 | -8.615850e-47 |
| Msa0363360 | Msa1035960 | 0.801537 | 8.594739e-49 | -8.615850e-47 |
| Msa0363360 | Msa1070010 | 0.800298 | 1.539319e-48 | -8.615850e-47 |
| Msa0363360 | Msa1075540 | 0.809699 | 1.663193e-50 | -8.615850e-47 |
| Msa0363360 | Msa1081330 | 0.810319 | 1.223093e-50 | -8.615850e-47 |
| Msa0363360 | Msa1082500 | 0.858614 | 7.298015e-63 | -8.615850e-47 |
| Msa0363360 | Msa1108160 | 0.806624 | 7.515040e-50 | -8.615850e-47 |
| Msa0363360 | Msa1122520 | 0.816085 | 6.633719e-52 | -8.615850e-47 |
| Msa0363360 | Msa1142020 | 0.800960 | 1.127865e-48 | -8.615850e-47 |
| Msa0363360 | Msa1151910 | 0.812120 | 4.973463e-51 | -8.615850e-47 |
| Msa0363360 | Msa1161580 | 0.809903 | 1.503409e-50 | -8.615850e-47 |
| Msa0363360 | Msa1165520 | 0.803326 | 3.677312e-49 | -8.615850e-47 |
| Msa0363360 | Msa1172670 | 0.817834 | 2.684591e-52 | -8.615850e-47 |
| Msa0363360 | Msa1193290 | 0.826112 | 3.244179e-54 | -8.615850e-47 |
| Msa0363360 | Msa1242220 | 0.800170 | 1.634363e-48 | -8.615850e-47 |
| Msa0363360 | Msa1244250 | 0.806803 | 6.887275e-50 | -8.615850e-47 |
| Msa0363360 | Msa1270610 | 0.801109 | 1.051315e-48 | -8.615850e-47 |
| Msa0363360 | Msa1278840 | 0.805868 | 1.084562e-49 | -8.615850e-47 |
| Msa0363360 | Msa1283860 | 0.813791 | 2.140701e-51 | -8.615850e-47 |
| Msa0363360 | Msa1284680 | 0.828756 | 7.532333e-55 | -8.615850e-47 |
| Msa0363360 | Msa1287440 | 0.809227 | 2.099939e-50 | -8.615850e-47 |
| Msa0363360 | Msa1308580 | 0.834269 | 3.303788e-56 | -8.615850e-47 |
| Msa0363360 | Msa1308620 | 0.848099 | 7.605395e-60 | -8.615850e-47 |
| Msa0363360 | Msa1313150 | 0.805077 | 1.588614e-49 | -8.615850e-47 |
| Msa0363360 | Msa1322890 | 0.815155 | 1.068800e-51 | -8.615850e-47 |
| Msa0363360 | Msa1324660 | 0.804265 | 2.347369e-49 | -8.615850e-47 |
| Msa0363360 | Msa1353470 | 0.824597 | 7.405819e-54 | -8.615850e-47 |
| Msa0363360 | Msa1360060 | 0.801936 | 7.115288e-49 | -8.615850e-47 |
| Msa0363360 | Msa1372760 | 0.824062 | 9.890607e-54 | -8.615850e-47 |
| Msa0363360 | Msa1372980 | 0.805394 | 1.363540e-49 | -8.615850e-47 |
| Msa0363360 | Msa1373030 | 0.802616 | 5.155114e-49 | -8.615850e-47 |
| Msa0363360 | Msa1397610 | 0.815441 | 9.232292e-52 | -8.615850e-47 |
| Msa0363360 | Msa1399480 | 0.801782 | 7.655091e-49 | -8.615850e-47 |
| Msa0363360 | Msa1409870 | 0.817905 | 2.588096e-52 | -8.615850e-47 |
| Msa0363360 | Msa1411020 | 0.808426 | 3.115828e-50 | -8.615850e-47 |
| Msa0363360 | Msa1420140 | 0.825578 | 4.343911e-54 | -8.615850e-47 |
| Msa0363360 | Msa1424290 | 0.804360 | 2.243068e-49 | -8.615850e-47 |
| Msa0363360 | Msa1425100 | 0.808900 | 2.466855e-50 | -8.615850e-47 |
| Msa0363360 | Msa1434350 | 0.804003 | 2.660810e-49 | -8.615850e-47 |
| Msa0363360 | Msa1438250 | 0.810964 | 8.870383e-51 | -8.615850e-47 |
| Msa0363360 | Msa1439320 | 0.811458 | 6.931816e-51 | -8.615850e-47 |
| Msa0363360 | Msa1450760 | 0.814099 | 1.830251e-51 | -8.615850e-47 |
| Msa0363360 | Msa1452120 | 0.837871 | 4.024958e-57 | -8.615850e-47 |
| Msa0363360 | Msa1463670 | 0.801735 | 7.825005e-49 | -8.615850e-47 |
| Msa0363360 | Msa1464810 | 0.811517 | 6.728516e-51 | -8.615850e-47 |
| Msa0363360 | Msa1466540 | 0.808134 | 3.594660e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363360 | MtrunA17_Chr3g0102001 | 55.429 | 525 | 128 | 8 | 1 | 434 | 239 | 748 | 9.91e-169 | 492 |
| Msa0363360 | MtrunA17_Chr5g0439061 | 50.163 | 307 | 118 | 3 | 158 | 432 | 438 | 741 | 4.25e-87 | 281 |
| Msa0363360 | MtrunA17_Chr3g0098481 | 44.164 | 317 | 136 | 4 | 154 | 434 | 33 | 344 | 7.47e-82 | 255 |
| Msa0363360 | MtrunA17_Chr5g0439051 | 59.000 | 200 | 81 | 1 | 233 | 432 | 21 | 219 | 7.42e-73 | 228 |
| Msa0363360 | MtrunA17_Chr3g0098531 | 42.905 | 296 | 129 | 4 | 174 | 434 | 6 | 296 | 1.05e-71 | 228 |
| Msa0363360 | MtrunA17_Chr2g0286601 | 31.983 | 469 | 256 | 9 | 19 | 431 | 228 | 689 | 1.42e-63 | 217 |
| Msa0363360 | MtrunA17_Chr5g0439081 | 48.485 | 198 | 100 | 1 | 233 | 430 | 17 | 212 | 9.63e-61 | 197 |
| Msa0363360 | MtrunA17_Chr3g0098301 | 39.482 | 309 | 146 | 4 | 154 | 426 | 99 | 402 | 3.61e-60 | 201 |
| Msa0363360 | MtrunA17_Chr2g0286551 | 38.339 | 313 | 155 | 4 | 150 | 431 | 363 | 668 | 1.51e-52 | 187 |
| Msa0363360 | MtrunA17_Chr2g0286561 | 42.424 | 198 | 114 | 0 | 234 | 431 | 17 | 214 | 3.18e-51 | 172 |
| Msa0363360 | MtrunA17_Chr2g0297481 | 28.421 | 285 | 179 | 5 | 157 | 418 | 186 | 468 | 4.62e-32 | 127 |
| Msa0363360 | MtrunA17_Chr2g0297491 | 30.345 | 290 | 171 | 6 | 157 | 418 | 88 | 374 | 1.50e-31 | 124 |
| Msa0363360 | MtrunA17_Chr2g0284501 | 32.899 | 307 | 162 | 6 | 157 | 427 | 369 | 667 | 5.48e-30 | 122 |
| Msa0363360 | MtrunA17_Chr2g0284541 | 34.106 | 302 | 163 | 8 | 157 | 427 | 353 | 649 | 1.47e-29 | 121 |
| Msa0363360 | MtrunA17_Chr2g0297681 | 26.174 | 298 | 180 | 4 | 157 | 421 | 399 | 689 | 3.92e-29 | 120 |
| Msa0363360 | MtrunA17_Chr3g0098511 | 52.475 | 101 | 46 | 1 | 336 | 434 | 1 | 101 | 8.95e-29 | 108 |
| Msa0363360 | MtrunA17_Chr2g0297691 | 27.397 | 292 | 178 | 5 | 157 | 418 | 401 | 688 | 1.34e-28 | 119 |
| Msa0363360 | MtrunA17_Chr3g0098541 | 56.075 | 107 | 37 | 3 | 1 | 103 | 192 | 292 | 1.15e-27 | 112 |
| Msa0363360 | MtrunA17_Chr5g0410201 | 27.458 | 295 | 185 | 7 | 156 | 422 | 33 | 326 | 1.70e-27 | 112 |
| Msa0363360 | MtrunA17_Chr5g0443001 | 28.231 | 294 | 171 | 6 | 157 | 418 | 313 | 598 | 1.96e-27 | 115 |
| Msa0363360 | MtrunA17_Chr3g0100301 | 32.759 | 174 | 116 | 1 | 239 | 412 | 228 | 400 | 2.93e-27 | 112 |
| Msa0363360 | MtrunA17_Chr5g0410171 | 25.566 | 309 | 197 | 5 | 146 | 422 | 425 | 732 | 2.28e-26 | 112 |
| Msa0363360 | MtrunA17_Chr2g0297651 | 26.990 | 289 | 182 | 5 | 157 | 418 | 401 | 687 | 2.65e-26 | 112 |
| Msa0363360 | MtrunA17_Chr5g0410271 | 25.633 | 316 | 205 | 6 | 135 | 422 | 12 | 325 | 9.30e-26 | 107 |
| Msa0363360 | MtrunA17_Chr2g0297701 | 25.436 | 287 | 188 | 4 | 158 | 418 | 280 | 566 | 1.52e-25 | 109 |
| Msa0363360 | MtrunA17_Chr5g0410341 | 24.407 | 295 | 194 | 4 | 156 | 422 | 451 | 744 | 5.77e-25 | 107 |
| Msa0363360 | MtrunA17_Chr6g0456141 | 26.792 | 265 | 162 | 5 | 156 | 392 | 92 | 352 | 1.78e-24 | 104 |
| Msa0363360 | MtrunA17_Chr6g0456101 | 26.408 | 284 | 183 | 4 | 156 | 414 | 449 | 731 | 1.12e-23 | 103 |
| Msa0363360 | MtrunA17_Chr3g0100741 | 27.018 | 285 | 174 | 4 | 157 | 412 | 308 | 587 | 1.68e-23 | 103 |
| Msa0363360 | MtrunA17_Chr6g0457101 | 24.315 | 292 | 195 | 4 | 156 | 422 | 396 | 686 | 1.89e-23 | 103 |
| Msa0363360 | MtrunA17_Chr2g0297711 | 24.843 | 318 | 201 | 7 | 134 | 420 | 215 | 525 | 3.48e-23 | 102 |
| Msa0363360 | MtrunA17_Chr5g0410191 | 29.545 | 176 | 123 | 1 | 247 | 422 | 17 | 191 | 9.57e-23 | 95.1 |
| Msa0363360 | MtrunA17_Chr3g0096941 | 26.102 | 295 | 192 | 3 | 157 | 425 | 309 | 603 | 4.71e-19 | 89.7 |
| Msa0363360 | MtrunA17_Chr5g0410461 | 24.490 | 294 | 192 | 4 | 156 | 419 | 167 | 460 | 1.03e-17 | 85.1 |
| Msa0363360 | MtrunA17_Chr5g0439041 | 46.512 | 86 | 46 | 0 | 149 | 234 | 53 | 138 | 4.44e-17 | 79.7 |
| Msa0363360 | MtrunA17_Chr5g0410371 | 25.000 | 292 | 190 | 4 | 157 | 419 | 1 | 292 | 5.28e-17 | 81.3 |
| Msa0363360 | MtrunA17_Chr5g0410581 | 25.194 | 258 | 166 | 4 | 156 | 386 | 498 | 755 | 6.53e-17 | 83.6 |
| Msa0363360 | MtrunA17_Chr5g0410181 | 31.061 | 132 | 90 | 1 | 291 | 422 | 2 | 132 | 2.68e-15 | 72.4 |
| Msa0363360 | MtrunA17_Chr5g0410541 | 28.667 | 150 | 104 | 2 | 241 | 388 | 30 | 178 | 1.86e-13 | 69.3 |
| Msa0363360 | MtrunA17_Chr2g0297611 | 37.079 | 89 | 54 | 2 | 237 | 325 | 1 | 87 | 3.42e-13 | 65.1 |
| Msa0363360 | MtrunA17_Chr5g0410451 | 30.282 | 142 | 97 | 1 | 240 | 379 | 47 | 188 | 1.30e-12 | 67.4 |
| Msa0363360 | MtrunA17_Chr5g0410511 | 27.397 | 146 | 106 | 0 | 234 | 379 | 4 | 149 | 6.96e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363360 | AT5G35810.1 | 28.939 | 311 | 185 | 7 | 157 | 434 | 35 | 342 | 4.38e-34 | 130 |
| Msa0363360 | AT3G18670.2 | 28.431 | 306 | 189 | 6 | 156 | 434 | 347 | 649 | 2.18e-30 | 124 |
| Msa0363360 | AT3G18670.1 | 28.431 | 306 | 189 | 6 | 156 | 434 | 292 | 594 | 2.26e-30 | 124 |
| Msa0363360 | AT3G54065.1 | 29.897 | 194 | 130 | 1 | 234 | 421 | 24 | 217 | 3.33e-25 | 103 |
| Msa0363360 | AT5G04700.1 | 35.000 | 180 | 106 | 2 | 245 | 418 | 478 | 652 | 3.35e-25 | 108 |
| Msa0363360 | AT5G04690.1 | 31.863 | 204 | 134 | 3 | 234 | 436 | 425 | 624 | 4.93e-24 | 105 |
| Msa0363360 | AT5G04730.1 | 26.568 | 271 | 188 | 4 | 159 | 424 | 327 | 591 | 5.13e-24 | 105 |
| Msa0363360 | AT5G04690.3 | 31.863 | 204 | 134 | 3 | 234 | 436 | 445 | 644 | 6.17e-24 | 105 |
| Msa0363360 | AT5G04690.2 | 31.863 | 204 | 134 | 3 | 234 | 436 | 459 | 658 | 6.26e-24 | 105 |
| Msa0363360 | AT5G04680.3 | 32.065 | 184 | 114 | 3 | 245 | 418 | 451 | 633 | 2.58e-17 | 84.7 |
| Msa0363360 | AT5G04680.4 | 32.961 | 179 | 109 | 3 | 245 | 413 | 465 | 642 | 2.77e-17 | 84.7 |
| Msa0363360 | AT5G04680.2 | 32.961 | 179 | 109 | 3 | 245 | 413 | 342 | 519 | 3.03e-17 | 84.3 |
| Msa0363360 | AT5G04680.1 | 32.961 | 179 | 109 | 3 | 245 | 413 | 494 | 671 | 3.10e-17 | 84.7 |
Find 77 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGAACCTGAAGCAATTT+TGG | 0.129756 | 3_1:-55704249 | Msa0363360:CDS |
| ATCTATATCCTTGGCATTTC+AGG | 0.167178 | 3_1:-55705114 | Msa0363360:intron |
| TTCAGATGGCATTGCTATAT+TGG | 0.196245 | 3_1:+55705194 | None:intergenic |
| TTCCATGTTAACATCGTATA+TGG | 0.212428 | 3_1:+55704058 | None:intergenic |
| AATCCCAAAAGTAGTTTCTT+TGG | 0.225787 | 3_1:+55703062 | None:intergenic |
| TGTCTCTCTACCATATCTTT+AGG | 0.254207 | 3_1:+55705228 | None:intergenic |
| ATAGGTAGTACTGTTATTAT+TGG | 0.259550 | 3_1:+55702777 | None:intergenic |
| CGCCCCTTATCACTTGTCTT+TGG | 0.263214 | 3_1:+55702849 | None:intergenic |
| CCAATGTCATTGAGGCATTA+AGG | 0.277228 | 3_1:-55703995 | Msa0363360:CDS |
| TTTGCCAAAGAAACTACTTT+TGG | 0.291810 | 3_1:-55703066 | Msa0363360:CDS |
| CTTTACATTGATCTTCTTAG+AGG | 0.300527 | 3_1:-55702888 | Msa0363360:CDS |
| TCACTTTCCAAAATTGCTTC+AGG | 0.306134 | 3_1:+55704242 | None:intergenic |
| TAACATGTGTCGTAGTTCTT+TGG | 0.306623 | 3_1:+55705675 | None:intergenic |
| ACTTATAAGTGAAGCAATTT+CGG | 0.307445 | 3_1:-55704195 | Msa0363360:CDS |
| TTTGCTTTGTCATCCGTAAT+TGG | 0.320194 | 3_1:-55703170 | Msa0363360:CDS |
| TCAGATGGCATTGCTATATT+GGG | 0.353151 | 3_1:+55705195 | None:intergenic |
| TTTGTTTCATCCGCAGCATC+TGG | 0.364611 | 3_1:+55705631 | None:intergenic |
| AGGGGCGGAAAGAATTATAA+AGG | 0.372393 | 3_1:-55702833 | Msa0363360:exon |
| AAAACTATGCTACATGCCTT+TGG | 0.380319 | 3_1:-55705155 | Msa0363360:CDS |
| ATGTTCACTGGTTTCTGCTC+TGG | 0.383560 | 3_1:-55703011 | Msa0363360:CDS |
| CCAGGCTTTCCTTTCAATGA+TGG | 0.388765 | 3_1:+55703203 | None:intergenic |
| CGCATCATCAAGCACTGTGC+CGG | 0.401383 | 3_1:-55703252 | Msa0363360:CDS |
| TTTCTTCCTCATCCACCCCT+TGG | 0.401557 | 3_1:+55703925 | None:intergenic |
| TACTTGTAGCAGTTGAGAAC+AGG | 0.405850 | 3_1:-55704022 | Msa0363360:CDS |
| GGTGGCAACAACGGTGAAAC+AGG | 0.406357 | 3_1:-55703230 | Msa0363360:CDS |
| ATCACTTGTCTTTGGCACTT+TGG | 0.407011 | 3_1:+55702857 | None:intergenic |
| GTGCCAAAGACAAGTGATAA+GGG | 0.412267 | 3_1:-55702852 | Msa0363360:CDS |
| TCCATTGTTGCCATGTTCAC+TGG | 0.413454 | 3_1:-55703023 | Msa0363360:CDS |
| GTAGTAGCAGCACAACTTGC+TGG | 0.413960 | 3_1:-55703284 | Msa0363360:CDS |
| ATGAAGCAATCAAATATTAT+CGG | 0.438899 | 3_1:-55705734 | Msa0363360:CDS |
| AGAGAAACAAAGACCAATTA+CGG | 0.448501 | 3_1:+55703157 | None:intergenic |
| TTTCAGTCAAAATTGCTCTC+TGG | 0.457231 | 3_1:+55704168 | None:intergenic |
| CAGTGAAGTGAAAATGTGTT+TGG | 0.457520 | 3_1:-55702806 | Msa0363360:three_prime_UTR |
| TCACTTGCTTCCCTGTGACT+TGG | 0.466284 | 3_1:-55702932 | Msa0363360:CDS |
| AAAGCAAATGCTTCGAATCC+AGG | 0.468816 | 3_1:+55703185 | None:intergenic |
| AAATGGCATAGTTGAAATAG+TGG | 0.476650 | 3_1:-55704108 | Msa0363360:CDS |
| TTTGCATACATCTATATCCT+TGG | 0.476858 | 3_1:-55705123 | Msa0363360:CDS |
| GGAGCAGTACATTAAACAAC+TGG | 0.484471 | 3_1:-55703435 | Msa0363360:intron |
| CTAAGAAGATCAATGTAAAG+TGG | 0.485547 | 3_1:+55702891 | None:intergenic |
| CCATCATTGAAAGGAAAGCC+TGG | 0.486602 | 3_1:-55703203 | Msa0363360:CDS |
| TAGCAATGCCATCTGAAGAT+AGG | 0.486644 | 3_1:-55705188 | Msa0363360:CDS |
| TTCGAGAAGTGACTATAGAA+AGG | 0.490891 | 3_1:+55703114 | None:intergenic |
| AGTGCCAAAGACAAGTGATA+AGG | 0.491616 | 3_1:-55702853 | Msa0363360:CDS |
| GTTTCACCGTTGTTGCCACC+CGG | 0.495119 | 3_1:+55703233 | None:intergenic |
| ATTACTTCTAATGCTGCAAA+TGG | 0.509463 | 3_1:-55705609 | Msa0363360:intron |
| CCTTAATGCCTCAATGACAT+TGG | 0.514061 | 3_1:+55703995 | None:intergenic |
| TCTAATCCAAGGGGTGGATG+AGG | 0.514799 | 3_1:-55703931 | Msa0363360:CDS |
| AATTATACTGCTTCAAACAT+AGG | 0.527221 | 3_1:+55702759 | None:intergenic |
| ACCAGTGAACATGGCAACAA+TGG | 0.532260 | 3_1:+55703022 | None:intergenic |
| TTTCTAACTGTGAAATGCGC+TGG | 0.538087 | 3_1:+55703410 | None:intergenic |
| GCATCATCAAGCACTGTGCC+GGG | 0.538954 | 3_1:-55703251 | Msa0363360:CDS |
| TGATGCTAGTGCGTGGCTCA+AGG | 0.544483 | 3_1:-55703327 | Msa0363360:CDS |
| ATATTTGATAATCTAATCCA+AGG | 0.554671 | 3_1:-55703942 | Msa0363360:CDS |
| TAATGTTTGTAATAATACAT+TGG | 0.555614 | 3_1:-55702729 | None:intergenic |
| AGCAAGTGAATATATAAATG+AGG | 0.568815 | 3_1:+55702946 | None:intergenic |
| GCTACTGCATACCAAGTCAC+AGG | 0.572239 | 3_1:+55702921 | None:intergenic |
| TATTTGATAATCTAATCCAA+GGG | 0.573799 | 3_1:-55703941 | Msa0363360:CDS |
| TTAACATCGTATATGGAACT+TGG | 0.574894 | 3_1:+55704065 | None:intergenic |
| CACAGTGCTTGATGATGCGA+AGG | 0.578147 | 3_1:+55703256 | None:intergenic |
| ACAGGTGAACCATCATTGAA+AGG | 0.586050 | 3_1:-55703212 | Msa0363360:CDS |
| TTATCAAAAGGTATACCTGC+GGG | 0.589087 | 3_1:-55705771 | None:intergenic |
| AGAGCAGAAACCAGTGAACA+TGG | 0.594503 | 3_1:+55703013 | None:intergenic |
| GGAAAAGACCTATCTTCAGA+TGG | 0.595754 | 3_1:+55705180 | None:intergenic |
| CAGGAGAACCAATGTCATTG+AGG | 0.602283 | 3_1:-55704003 | Msa0363360:CDS |
| GACACTTACCTGAAATGCCA+AGG | 0.603902 | 3_1:+55705106 | None:intergenic |
| ACTGTGCCGGGTGGCAACAA+CGG | 0.606000 | 3_1:-55703239 | Msa0363360:CDS |
| TTCCATATACGATGTTAACA+TGG | 0.609214 | 3_1:-55704060 | Msa0363360:CDS |
| TGATAATCTAATCCAAGGGG+TGG | 0.630497 | 3_1:-55703937 | Msa0363360:CDS |
| ATAAACTTGTCCAGATGCTG+CGG | 0.638927 | 3_1:-55705641 | Msa0363360:CDS |
| TGCCAAAGACAAGTGATAAG+GGG | 0.652324 | 3_1:-55702851 | Msa0363360:CDS |
| CTACTGCATACCAAGTCACA+GGG | 0.653286 | 3_1:+55702922 | None:intergenic |
| ATTATCAAAAGGTATACCTG+CGG | 0.668334 | 3_1:-55705772 | None:intergenic |
| TCATCAAGCACTGTGCCGGG+TGG | 0.678616 | 3_1:-55703248 | Msa0363360:CDS |
| CAAAGACAAGTGATAAGGGG+CGG | 0.679010 | 3_1:-55702848 | Msa0363360:CDS |
| ATTTGATAATCTAATCCAAG+GGG | 0.681888 | 3_1:-55703940 | Msa0363360:CDS |
| TGCAGGAGATAACAACAATG+AGG | 0.695234 | 3_1:-55704291 | Msa0363360:intron |
| TGATAAATGATGCTAGTGCG+TGG | 0.730360 | 3_1:-55703334 | Msa0363360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGTTTAAAAAATCTAT+TGG | + | chr3_1:55702992-55703011 | None:intergenic | 10.0% |
| !!! | AACTTTCAATCTTATTTTTT+CGG | + | chr3_1:55702964-55702983 | None:intergenic | 15.0% |
| !! | AAAAAATAAGATTGAAAGTT+AGG | - | chr3_1:55702964-55702983 | Msa0363360:CDS | 15.0% |
| !!! | ATTAATGACCTTTTAATTAT+GGG | - | chr3_1:55703999-55704018 | Msa0363360:CDS | 15.0% |
| !! | ATGAAGCAATCAAATATTAT+CGG | - | chr3_1:55702756-55702775 | Msa0363360:three_prime_UTR | 20.0% |
| !! | TACATTACAGTTTACATATT+AGG | - | chr3_1:55702908-55702927 | Msa0363360:CDS | 20.0% |
| !! | TTTATTCTCAAAATGGTATA+AGG | + | chr3_1:55703147-55703166 | None:intergenic | 20.0% |
| !!! | TGACTTTTTTATTCTCAAAA+TGG | + | chr3_1:55703154-55703173 | None:intergenic | 20.0% |
| !!! | TTTTCTCTAAAGAAAATGAT+AGG | - | chr3_1:55703181-55703200 | Msa0363360:CDS | 20.0% |
| !!! | TTTTTTTCTTTCATCTGTAT+AGG | - | chr3_1:55703441-55703460 | Msa0363360:intron | 20.0% |
| !!! | TGTATTCAAAATTTGCTTAA+AGG | - | chr3_1:55703556-55703575 | Msa0363360:intron | 20.0% |
| !!! | GTATTCAAAATTTGCTTAAA+GGG | - | chr3_1:55703557-55703576 | Msa0363360:intron | 20.0% |
| !!! | TATTCAAAATTTGCTTAAAG+GGG | - | chr3_1:55703558-55703577 | Msa0363360:intron | 20.0% |
| !! | TCTTAAATATAAGTGGAAAT+TGG | + | chr3_1:55703794-55703813 | None:intergenic | 20.0% |
| !!! | GATTAATGACCTTTTAATTA+TGG | - | chr3_1:55703998-55704017 | Msa0363360:CDS | 20.0% |
| !!! | TTTTGAAAAGGACAATAAAA+TGG | - | chr3_1:55704523-55704542 | Msa0363360:intron | 20.0% |
| !!! | ATATTTGATAATCTAATCCA+AGG | - | chr3_1:55704548-55704567 | Msa0363360:intron | 20.0% |
| !!! | TATTTGATAATCTAATCCAA+GGG | - | chr3_1:55704549-55704568 | Msa0363360:intron | 20.0% |
| !!! | AGATCAAACATTCTAAAATA+AGG | - | chr3_1:55704769-55704788 | Msa0363360:intron | 20.0% |
| !!! | AAATCAATTTTGTAATTGTG+TGG | + | chr3_1:55705407-55705426 | None:intergenic | 20.0% |
| !!! | TTTTTTCGGATTTTTGAACA+GGG | + | chr3_1:55702950-55702969 | None:intergenic | 25.0% |
| !!! | ATTTTTTCGGATTTTTGAAC+AGG | + | chr3_1:55702951-55702970 | None:intergenic | 25.0% |
| ! | AATGAGATGAGTAATTCTAA+GGG | - | chr3_1:55703035-55703054 | Msa0363360:CDS | 25.0% |
| ! | TCTGTATATTAGCAATATCT+TGG | - | chr3_1:55703073-55703092 | Msa0363360:CDS | 25.0% |
| !!! | TTTTTTGTCATTTGATCAGA+CGG | - | chr3_1:55703117-55703136 | Msa0363360:CDS | 25.0% |
| ! | TGAGAATAAAAAAGTCAGTA+TGG | - | chr3_1:55703157-55703176 | Msa0363360:CDS | 25.0% |
| !!! | AAGTTAAACTATGTTTTTGC+AGG | - | chr3_1:55703238-55703257 | Msa0363360:CDS | 25.0% |
| ! | ATGCAAACTTAAAAAACCAA+AGG | + | chr3_1:55703354-55703373 | None:intergenic | 25.0% |
| ! | ACACATACAAATGAAAAAAC+AGG | + | chr3_1:55703539-55703558 | None:intergenic | 25.0% |
| !!! | TCTCTAGTCTTAAATATAAG+TGG | + | chr3_1:55703801-55703820 | None:intergenic | 25.0% |
| !! | TCATTTCGATTTGATCATAA+GGG | - | chr3_1:55703824-55703843 | Msa0363360:intron | 25.0% |
| ! | ATAACATAAATGAAACTTGC+AGG | - | chr3_1:55704182-55704201 | Msa0363360:CDS | 25.0% |
| ! | ACTTATAAGTGAAGCAATTT+CGG | - | chr3_1:55704295-55704314 | Msa0363360:intron | 25.0% |
| !!! | ATTAAGGAAACGTTTTGAAA+AGG | - | chr3_1:55704511-55704530 | Msa0363360:intron | 25.0% |
| !! | ATTTGATAATCTAATCCAAG+GGG | - | chr3_1:55704550-55704569 | Msa0363360:intron | 25.0% |
| !! | TTTAGAATGTTTGATCTTGA+TGG | + | chr3_1:55704766-55704785 | None:intergenic | 25.0% |
| !! | CCAAAAACAATTGTTTGTTA+TGG | + | chr3_1:55704917-55704936 | None:intergenic | 25.0% |
| !! | CCATAACAAACAATTGTTTT+TGG | - | chr3_1:55704914-55704933 | Msa0363360:intron | 25.0% |
| !!! | ACAAACAATTGTTTTTGGTT+TGG | - | chr3_1:55704919-55704938 | Msa0363360:intron | 25.0% |
| !!! | CAAACAATTGTTTTTGGTTT+GGG | - | chr3_1:55704920-55704939 | Msa0363360:intron | 25.0% |
| ! | AGCAAGTGAATATATAAATG+AGG | + | chr3_1:55705547-55705566 | None:intergenic | 25.0% |
| ! | ATAGGTAGTACTGTTATTAT+TGG | + | chr3_1:55705716-55705735 | None:intergenic | 25.0% |
| ! | AATTATACTGCTTCAAACAT+AGG | + | chr3_1:55705734-55705753 | None:intergenic | 25.0% |
| ! | GATTGCTTCATCAACTTTTA+GGG | + | chr3_1:55702747-55702766 | None:intergenic | 30.0% |
| ! | TGATTGCTTCATCAACTTTT+AGG | + | chr3_1:55702748-55702767 | None:intergenic | 30.0% |
| !!! | TCTTTGGACAAGTTTTTTGT+GGG | + | chr3_1:55702802-55702821 | None:intergenic | 30.0% |
| !!! | TTCTTTGGACAAGTTTTTTG+TGG | + | chr3_1:55702803-55702822 | None:intergenic | 30.0% |
| ATTACTTCTAATGCTGCAAA+TGG | - | chr3_1:55702881-55702900 | Msa0363360:CDS | 30.0% | |
| CTTAGAATTACTCATCTCAT+TGG | + | chr3_1:55703036-55703055 | None:intergenic | 30.0% | |
| CAATGAGATGAGTAATTCTA+AGG | - | chr3_1:55703034-55703053 | Msa0363360:CDS | 30.0% | |
| TTTGCATACATCTATATCCT+TGG | - | chr3_1:55703367-55703386 | Msa0363360:CDS | 30.0% | |
| TATCCTTATTGATCTAGAGA+AGG | - | chr3_1:55703408-55703427 | Msa0363360:CDS | 30.0% | |
| CAACCTAAAAAAACAAGTGT+AGG | + | chr3_1:55703471-55703490 | None:intergenic | 30.0% | |
| !! | TCGTGGTTGTTATTGTTTTA+TGG | - | chr3_1:55703506-55703525 | Msa0363360:intron | 30.0% |
| !! | CGTGGTTGTTATTGTTTTAT+GGG | - | chr3_1:55703507-55703526 | Msa0363360:intron | 30.0% |
| !! | GTGGTTGTTATTGTTTTATG+GGG | - | chr3_1:55703508-55703527 | Msa0363360:intron | 30.0% |
| ! | AATCCTTTTGAATCGTACTT+GGG | - | chr3_1:55703649-55703668 | Msa0363360:intron | 30.0% |
| ! | AGGTATCTGATTCATTTTAG+TGG | - | chr3_1:55703738-55703757 | Msa0363360:intron | 30.0% |
| ! | GTCATTTCGATTTGATCATA+AGG | - | chr3_1:55703823-55703842 | Msa0363360:intron | 30.0% |
| AACGGTTGTAAAACAATCAT+TGG | + | chr3_1:55703962-55703981 | None:intergenic | 30.0% | |
| !! | GATTGTTTTACAACCGTTTT+TGG | - | chr3_1:55703964-55703983 | Msa0363360:CDS | 30.0% |
| ! | ATGAAGTGCCCATAATTAAA+AGG | + | chr3_1:55704010-55704029 | None:intergenic | 30.0% |
| !!! | AGTCAATGATTGTTTTAGTC+AGG | + | chr3_1:55704055-55704074 | None:intergenic | 30.0% |
| TGACTAAAACAATCATTGAC+TGG | - | chr3_1:55704054-55704073 | Msa0363360:CDS | 30.0% | |
| AAATGGCATAGTTGAAATAG+TGG | - | chr3_1:55704382-55704401 | Msa0363360:intron | 30.0% | |
| TTAACATCGTATATGGAACT+TGG | + | chr3_1:55704428-55704447 | None:intergenic | 30.0% | |
| TTCCATATACGATGTTAACA+TGG | - | chr3_1:55704430-55704449 | Msa0363360:intron | 30.0% | |
| TTCCATGTTAACATCGTATA+TGG | + | chr3_1:55704435-55704454 | None:intergenic | 30.0% | |
| AAATGATGTGGCATATCAAA+TGG | - | chr3_1:55704654-55704673 | Msa0363360:intron | 30.0% | |
| GTCAATCAATCAAGATTAGA+GGG | + | chr3_1:55704826-55704845 | None:intergenic | 30.0% | |
| !! | TTTGTTATGGTCAATGGTTT+TGG | + | chr3_1:55704904-55704923 | None:intergenic | 30.0% |
| !! | CAATTGTTTGTTATGGTCAA+TGG | + | chr3_1:55704910-55704929 | None:intergenic | 30.0% |
| !!! | AATTGTTTTTGGTTTGGGTT+TGG | - | chr3_1:55704925-55704944 | Msa0363360:intron | 30.0% |
| !!! | ATTGTTTTTGGTTTGGGTTT+GGG | - | chr3_1:55704926-55704945 | Msa0363360:intron | 30.0% |
| !!! | CTATTTTAGTGTTCTGAGTT+CGG | + | chr3_1:55704960-55704979 | None:intergenic | 30.0% |
| AGAGAAACAAAGACCAATTA+CGG | + | chr3_1:55705336-55705355 | None:intergenic | 30.0% | |
| ! | TTTGCCAAAGAAACTACTTT+TGG | - | chr3_1:55705424-55705443 | Msa0363360:intron | 30.0% |
| !! | TTGCCAAAGAAACTACTTTT+GGG | - | chr3_1:55705425-55705444 | Msa0363360:intron | 30.0% |
| AATCCCAAAAGTAGTTTCTT+TGG | + | chr3_1:55705431-55705450 | None:intergenic | 30.0% | |
| ! | ACACAATGTGCTTGTATTTT+TGG | + | chr3_1:55705523-55705542 | None:intergenic | 30.0% |
| CTAAGAAGATCAATGTAAAG+TGG | + | chr3_1:55705602-55705621 | None:intergenic | 30.0% | |
| CTTTACATTGATCTTCTTAG+AGG | - | chr3_1:55705602-55705621 | Msa0363360:intron | 30.0% | |
| TAACATGTGTCGTAGTTCTT+TGG | + | chr3_1:55702818-55702837 | None:intergenic | 35.0% | |
| ! | TTTTGCAGGACCTAAAGATA+TGG | - | chr3_1:55703252-55703271 | Msa0363360:CDS | 35.0% |
| TGTCTCTCTACCATATCTTT+AGG | + | chr3_1:55703265-55703284 | None:intergenic | 35.0% | |
| TCAGATGGCATTGCTATATT+GGG | + | chr3_1:55703298-55703317 | None:intergenic | 35.0% | |
| TTCAGATGGCATTGCTATAT+TGG | + | chr3_1:55703299-55703318 | None:intergenic | 35.0% | |
| AAAACTATGCTACATGCCTT+TGG | - | chr3_1:55703335-55703354 | Msa0363360:CDS | 35.0% | |
| ATCTATATCCTTGGCATTTC+AGG | - | chr3_1:55703376-55703395 | Msa0363360:CDS | 35.0% | |
| AGACCTTCTCTAGATCAATA+AGG | + | chr3_1:55703414-55703433 | None:intergenic | 35.0% | |
| !!! | GCACCTACACTTGTTTTTTT+AGG | - | chr3_1:55703465-55703484 | Msa0363360:intron | 35.0% |
| ACAACCACGATAGTCAAAAT+AGG | + | chr3_1:55703496-55703515 | None:intergenic | 35.0% | |
| ! | GAATCCTTTTGAATCGTACT+TGG | - | chr3_1:55703648-55703667 | Msa0363360:intron | 35.0% |
| !! | ATCTCTTGTTGATTTGGCAT+CGG | + | chr3_1:55703677-55703696 | None:intergenic | 35.0% |
| ! | ACTCTCATCTCTTGTTGATT+TGG | + | chr3_1:55703683-55703702 | None:intergenic | 35.0% |
| TGAATCAGATACCTTGATCT+GGG | + | chr3_1:55703732-55703751 | None:intergenic | 35.0% | |
| ATGAATCAGATACCTTGATC+TGG | + | chr3_1:55703733-55703752 | None:intergenic | 35.0% | |
| TCACTTGAGTTCTCCAAAAA+CGG | + | chr3_1:55703980-55703999 | None:intergenic | 35.0% | |
| ! | GTCTTATCCTTCTGATTTTC+CGG | + | chr3_1:55704126-55704145 | None:intergenic | 35.0% |
| ! | CAAGTTTTGCAGAAGTCTTT+GGG | + | chr3_1:55704226-55704245 | None:intergenic | 35.0% |
| ! | TCAAGTTTTGCAGAAGTCTT+TGG | + | chr3_1:55704227-55704246 | None:intergenic | 35.0% |
| ! | ACTTGAACCTGAAGCAATTT+TGG | - | chr3_1:55704241-55704260 | Msa0363360:CDS | 35.0% |
| TCACTTTCCAAAATTGCTTC+AGG | + | chr3_1:55704251-55704270 | None:intergenic | 35.0% | |
| TTTCAGTCAAAATTGCTCTC+TGG | + | chr3_1:55704325-55704344 | None:intergenic | 35.0% | |
| !!! | ATTTTGACTGCAGCAAGAAA+TGG | - | chr3_1:55704365-55704384 | Msa0363360:intron | 35.0% |
| ! | GTAACAATCTCGATCACTTT+TGG | + | chr3_1:55704615-55704634 | None:intergenic | 35.0% |
| GATCGAGATTGTTACAAATC+TGG | - | chr3_1:55704620-55704639 | Msa0363360:intron | 35.0% | |
| GATATGCCACATCATTTCAA+GGG | + | chr3_1:55704651-55704670 | None:intergenic | 35.0% | |
| TGATATGCCACATCATTTCA+AGG | + | chr3_1:55704652-55704671 | None:intergenic | 35.0% | |
| GGTCAATCAATCAAGATTAG+AGG | + | chr3_1:55704827-55704846 | None:intergenic | 35.0% | |
| TCACGCAATCAAAATATCAG+TGG | + | chr3_1:55704848-55704867 | None:intergenic | 35.0% | |
| CGTGAATGAGTTAGTAAGTT+AGG | - | chr3_1:55704863-55704882 | Msa0363360:intron | 35.0% | |
| TTGTTTAATGTACTGCTCCA+TGG | + | chr3_1:55705054-55705073 | None:intergenic | 35.0% | |
| TTTGCTTTGTCATCCGTAAT+TGG | - | chr3_1:55705320-55705339 | Msa0363360:intron | 35.0% | |
| TTCGAGAAGTGACTATAGAA+AGG | + | chr3_1:55705379-55705398 | None:intergenic | 35.0% | |
| CAGTGAAGTGAAAATGTGTT+TGG | - | chr3_1:55705684-55705703 | Msa0363360:CDS | 35.0% | |
| ATAAACTTGTCCAGATGCTG+CGG | - | chr3_1:55702849-55702868 | Msa0363360:CDS | 40.0% | |
| TAGCAATGCCATCTGAAGAT+AGG | - | chr3_1:55703302-55703321 | Msa0363360:CDS | 40.0% | |
| GGAAAAGACCTATCTTCAGA+TGG | + | chr3_1:55703313-55703332 | None:intergenic | 40.0% | |
| ! | AGGCATGTAGCATAGTTTTC+TGG | + | chr3_1:55703334-55703353 | None:intergenic | 40.0% |
| !!! | TGTGCCTATTTTGACTATCG+TGG | - | chr3_1:55703489-55703508 | Msa0363360:intron | 40.0% |
| ! | AGATGAAGCAAGAGCACAAA+TGG | - | chr3_1:55703596-55703615 | Msa0363360:intron | 40.0% |
| GTTCCCAAGTACGATTCAAA+AGG | + | chr3_1:55703655-55703674 | None:intergenic | 40.0% | |
| TTTGTTTACAGCCCAGATCA+AGG | - | chr3_1:55703718-55703737 | Msa0363360:intron | 40.0% | |
| TGAAGGAAGTCCAAGTAACA+CGG | + | chr3_1:55704103-55704122 | None:intergenic | 40.0% | |
| TGCAGGAGATAACAACAATG+AGG | - | chr3_1:55704199-55704218 | Msa0363360:CDS | 40.0% | |
| TACTTGTAGCAGTTGAGAAC+AGG | - | chr3_1:55704468-55704487 | Msa0363360:intron | 40.0% | |
| CCTTAATGCCTCAATGACAT+TGG | + | chr3_1:55704498-55704517 | None:intergenic | 40.0% | |
| ! | CCAATGTCATTGAGGCATTA+AGG | - | chr3_1:55704495-55704514 | Msa0363360:intron | 40.0% |
| TGATAATCTAATCCAAGGGG+TGG | - | chr3_1:55704553-55704572 | Msa0363360:intron | 40.0% | |
| GTGGCATATCAAATGGTTTG+AGG | - | chr3_1:55704661-55704680 | Msa0363360:intron | 40.0% | |
| AGAGGGTCTAGATTCAAACT+CGG | + | chr3_1:55704809-55704828 | None:intergenic | 40.0% | |
| ! | TTAGTGTTCTGAGTTCGGAT+TGG | + | chr3_1:55704955-55704974 | None:intergenic | 40.0% |
| TGGTGCGAAAGTAGTAAGAA+GGG | + | chr3_1:55705034-55705053 | None:intergenic | 40.0% | |
| ATGGTGCGAAAGTAGTAAGA+AGG | + | chr3_1:55705035-55705054 | None:intergenic | 40.0% | |
| TTCTTACTACTTTCGCACCA+TGG | - | chr3_1:55705034-55705053 | Msa0363360:intron | 40.0% | |
| GGAGCAGTACATTAAACAAC+TGG | - | chr3_1:55705055-55705074 | Msa0363360:intron | 40.0% | |
| TTTCTAACTGTGAAATGCGC+TGG | + | chr3_1:55705083-55705102 | None:intergenic | 40.0% | |
| TGATAAATGATGCTAGTGCG+TGG | - | chr3_1:55705156-55705175 | Msa0363360:CDS | 40.0% | |
| ACAGGTGAACCATCATTGAA+AGG | - | chr3_1:55705278-55705297 | Msa0363360:intron | 40.0% | |
| AAAGCAAATGCTTCGAATCC+AGG | + | chr3_1:55705308-55705327 | None:intergenic | 40.0% | |
| ATCACTTGTCTTTGGCACTT+TGG | + | chr3_1:55705636-55705655 | None:intergenic | 40.0% | |
| AGTGCCAAAGACAAGTGATA+AGG | - | chr3_1:55705637-55705656 | Msa0363360:CDS | 40.0% | |
| GTGCCAAAGACAAGTGATAA+GGG | - | chr3_1:55705638-55705657 | Msa0363360:CDS | 40.0% | |
| TGCCAAAGACAAGTGATAAG+GGG | - | chr3_1:55705639-55705658 | Msa0363360:CDS | 40.0% | |
| AGGGGCGGAAAGAATTATAA+AGG | - | chr3_1:55705657-55705676 | Msa0363360:CDS | 40.0% | |
| TTTGTTTCATCCGCAGCATC+TGG | + | chr3_1:55702862-55702881 | None:intergenic | 45.0% | |
| GACACTTACCTGAAATGCCA+AGG | + | chr3_1:55703387-55703406 | None:intergenic | 45.0% | |
| ! | AAGCAAGAGCACAAATGGAG+TGG | - | chr3_1:55703601-55703620 | Msa0363360:intron | 45.0% |
| AAGTAACACGGAGATCAGTC+AGG | + | chr3_1:55704091-55704110 | None:intergenic | 45.0% | |
| ! | TGACTGATCTCCGTGTTACT+TGG | - | chr3_1:55704090-55704109 | Msa0363360:CDS | 45.0% |
| GTTACTTGGACTTCCTTCAC+CGG | - | chr3_1:55704104-55704123 | Msa0363360:CDS | 45.0% | |
| TCCTTCACCGGAAAATCAGA+AGG | - | chr3_1:55704116-55704135 | Msa0363360:CDS | 45.0% | |
| ! | TCCTTCTGATTTTCCGGTGA+AGG | + | chr3_1:55704120-55704139 | None:intergenic | 45.0% |
| CAGGAGAACCAATGTCATTG+AGG | - | chr3_1:55704487-55704506 | Msa0363360:intron | 45.0% | |
| ATTCGGATTCACAGCAGTCA+AGG | - | chr3_1:55704702-55704721 | Msa0363360:intron | 45.0% | |
| TTCGGATTCACAGCAGTCAA+GGG | - | chr3_1:55704703-55704722 | Msa0363360:intron | 45.0% | |
| CCAGGCTTTCCTTTCAATGA+TGG | + | chr3_1:55705290-55705309 | None:intergenic | 45.0% | |
| CCATCATTGAAAGGAAAGCC+TGG | - | chr3_1:55705287-55705306 | Msa0363360:intron | 45.0% | |
| TCCATTGTTGCCATGTTCAC+TGG | - | chr3_1:55705467-55705486 | Msa0363360:intron | 45.0% | |
| ACCAGTGAACATGGCAACAA+TGG | + | chr3_1:55705471-55705490 | None:intergenic | 45.0% | |
| AGAGCAGAAACCAGTGAACA+TGG | + | chr3_1:55705480-55705499 | None:intergenic | 45.0% | |
| !! | ATGTTCACTGGTTTCTGCTC+TGG | - | chr3_1:55705479-55705498 | Msa0363360:intron | 45.0% |
| CTACTGCATACCAAGTCACA+GGG | + | chr3_1:55705571-55705590 | None:intergenic | 45.0% | |
| CAAAGACAAGTGATAAGGGG+CGG | - | chr3_1:55705642-55705661 | Msa0363360:CDS | 45.0% | |
| !!! | AATTTTTTTATTTTAAATCA+AGG | - | chr3_1:55703903-55703922 | Msa0363360:intron | 5.0% |
| !!! | ATTTATTTTATTTTTTCATT+CGG | - | chr3_1:55704685-55704704 | Msa0363360:intron | 5.0% |
| !!! | TCAACTTTTAGGGTTCCCGC+AGG | + | chr3_1:55702737-55702756 | None:intergenic | 50.0% |
| TCTAATCCAAGGGGTGGATG+AGG | - | chr3_1:55704559-55704578 | Msa0363360:intron | 50.0% | |
| TTTCTTCCTCATCCACCCCT+TGG | + | chr3_1:55704568-55704587 | None:intergenic | 50.0% | |
| GTGCTGCCCTTGAAATGATG+TGG | - | chr3_1:55704642-55704661 | Msa0363360:intron | 50.0% | |
| GTAGTAGCAGCACAACTTGC+TGG | - | chr3_1:55705206-55705225 | Msa0363360:CDS | 50.0% | |
| !! | CACAGTGCTTGATGATGCGA+AGG | + | chr3_1:55705237-55705256 | None:intergenic | 50.0% |
| TCACTTGCTTCCCTGTGACT+TGG | - | chr3_1:55705558-55705577 | Msa0363360:intron | 50.0% | |
| GCTACTGCATACCAAGTCAC+AGG | + | chr3_1:55705572-55705591 | None:intergenic | 50.0% | |
| CGCCCCTTATCACTTGTCTT+TGG | + | chr3_1:55705644-55705663 | None:intergenic | 50.0% | |
| TGATGCTAGTGCGTGGCTCA+AGG | - | chr3_1:55705163-55705182 | Msa0363360:CDS | 55.0% | |
| ! | CGCATCATCAAGCACTGTGC+CGG | - | chr3_1:55705238-55705257 | Msa0363360:intron | 55.0% |
| ! | GCATCATCAAGCACTGTGCC+GGG | - | chr3_1:55705239-55705258 | Msa0363360:intron | 55.0% |
| GTTTCACCGTTGTTGCCACC+CGG | + | chr3_1:55705260-55705279 | None:intergenic | 55.0% | |
| GGTGGCAACAACGGTGAAAC+AGG | - | chr3_1:55705260-55705279 | Msa0363360:intron | 55.0% | |
| ! | TCATCAAGCACTGTGCCGGG+TGG | - | chr3_1:55705242-55705261 | Msa0363360:intron | 60.0% |
| ACTGTGCCGGGTGGCAACAA+CGG | - | chr3_1:55705251-55705270 | Msa0363360:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 55702731 | 55705781 | 55702731 | ID=Msa0363360;Name=Msa0363360 |
| chr3_1 | mRNA | 55702731 | 55705781 | 55702731 | ID=Msa0363360-mRNA-1;Parent=Msa0363360;Name=Msa0363360-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0.25|1|0.66|0.5|4|105|436 |
| chr3_1 | exon | 55702731 | 55703450 | 55702731 | ID=Msa0363360-mRNA-1:exon:10211;Parent=Msa0363360-mRNA-1 |
| chr3_1 | exon | 55703920 | 55704305 | 55703920 | ID=Msa0363360-mRNA-1:exon:10210;Parent=Msa0363360-mRNA-1 |
| chr3_1 | exon | 55705115 | 55705252 | 55705115 | ID=Msa0363360-mRNA-1:exon:10209;Parent=Msa0363360-mRNA-1 |
| chr3_1 | exon | 55705610 | 55705781 | 55705610 | ID=Msa0363360-mRNA-1:exon:10208;Parent=Msa0363360-mRNA-1 |
| chr3_1 | CDS | 55705610 | 55705781 | 55705610 | ID=Msa0363360-mRNA-1:cds;Parent=Msa0363360-mRNA-1 |
| chr3_1 | CDS | 55705115 | 55705252 | 55705115 | ID=Msa0363360-mRNA-1:cds;Parent=Msa0363360-mRNA-1 |
| chr3_1 | CDS | 55703920 | 55704305 | 55703920 | ID=Msa0363360-mRNA-1:cds;Parent=Msa0363360-mRNA-1 |
| chr3_1 | CDS | 55702836 | 55703450 | 55702836 | ID=Msa0363360-mRNA-1:cds;Parent=Msa0363360-mRNA-1 |
| chr3_1 | three_prime_UTR | 55702731 | 55702835 | 55702731 | ID=Msa0363360-mRNA-1:three_prime_utr;Parent=Msa0363360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
