AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0244860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244860 MtrunA17_Chr2g0298701 90.934 717 31 4 1 693 1 707 0.0 1253
Msa0244860 MtrunA17_Chr1g0207661 47.210 233 115 3 139 371 245 469 3.30e-58 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244860 AT4G29940.2 55.556 423 168 5 136 544 97 513 4.89e-144 439
Msa0244860 AT4G29940.1 55.556 423 168 5 136 544 97 513 6.07e-144 440
Msa0244860 AT3G19510.1 47.177 248 121 3 123 369 158 396 3.73e-61 218
Msa0244860 AT3G19510.2 47.177 248 121 3 123 369 158 396 3.73e-61 218

Find 142 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGCATCACAATCTTTA+AGG 0.134962 2_2:-23658126 None:intergenic
CCCAAGTGTGGAGGTATTTC+TGG 0.146341 2_2:-23663070 None:intergenic
AGGGCGTCCTTCACGGATTT+TGG 0.158407 2_2:-23662400 None:intergenic
GATGGATAGGAAATTGAAAT+TGG 0.159981 2_2:-23658197 None:intergenic
AAGAACAATGATAGAATAAA+AGG 0.187496 2_2:+23662162 Msa0244860:CDS
TCCAGCATGTGGTCTTTAAA+TGG 0.227946 2_2:+23661392 Msa0244860:CDS
ATCCTTGGTTGGCACCTTAT+TGG 0.235926 2_2:-23659641 None:intergenic
CAAAACCAGCCTTGGTCTTC+AGG 0.247836 2_2:-23660649 None:intergenic
CCTCCACACTTGGGAGAAAA+TGG 0.255233 2_2:+23663079 Msa0244860:CDS
CTATCATTGTTCTTATTATT+CGG 0.255964 2_2:-23662153 None:intergenic
CTGAAATTGAAGAGAAAATA+TGG 0.293844 2_2:-23658335 None:intergenic
AACCTGCCAAGTACTGTCTA+AGG 0.296673 2_2:-23660737 None:intergenic
TCAGTCTGTCTTTCTTCCTT+TGG 0.302813 2_2:-23659555 None:intergenic
TGGCTTTCTTCCTTCCTCTC+TGG 0.343007 2_2:-23661311 None:intergenic
AGATATTCCTTGTTCTTCTC+TGG 0.348606 2_2:-23659873 None:intergenic
TGACTGTAAGATAGAAATAT+TGG 0.355208 2_2:+23660681 Msa0244860:CDS
GGATTATAGTCATCGTCTTC+AGG 0.355847 2_2:-23661290 None:intergenic
TTTCGAAAGGGCGTCCTTCA+CGG 0.358216 2_2:-23662407 None:intergenic
AGCTACTGATTCTTCCAATA+AGG 0.369588 2_2:+23659627 Msa0244860:CDS
AGAATAAAAGGGAATTCTTC+AGG 0.374854 2_2:+23662174 Msa0244860:CDS
CAGAGTATAATATCATTATC+TGG 0.390452 2_2:-23660459 None:intergenic
CTTTAAGGTTCTTGTTGTGT+TGG 0.395929 2_2:-23658111 None:intergenic
GAAGATGAAGATTGGGGTCC+TGG 0.398942 2_2:+23662054 Msa0244860:CDS
AGATTGAAGCAAAGATTAAC+TGG 0.399258 2_2:+23663960 Msa0244860:CDS
GGACGCCCTTTCGAAAGAAA+TGG 0.401279 2_2:+23662414 Msa0244860:CDS
ATGGATAGGAAATTGAAATT+GGG 0.404420 2_2:-23658196 None:intergenic
TATCCATCATTCAATCGAAA+AGG 0.404944 2_2:+23658212 Msa0244860:five_prime_UTR
AAGAAGTGTGAAAATGTTAC+TGG 0.405838 2_2:+23663001 Msa0244860:CDS
ATGTTCCTATAGCTGAGTTA+AGG 0.407231 2_2:+23664042 Msa0244860:CDS
AAACTTCTCTTAATCATGAT+AGG 0.417638 2_2:+23659740 Msa0244860:CDS
AGTTCAGTTGGTAGTATTGA+AGG 0.418881 2_2:+23660261 Msa0244860:CDS
CACATAGATTCTGATGAATC+CGG 0.421682 2_2:+23661467 Msa0244860:CDS
CCGTGATGCCATTCACCAAC+TGG 0.421979 2_2:+23660230 Msa0244860:CDS
GAGATGTCTTGATCCTCCTT+TGG 0.422829 2_2:+23660512 Msa0244860:CDS
AGATTCCCAATGTTGATACT+AGG 0.428050 2_2:-23658169 None:intergenic
AGTGAGTGAAGATGAAGATT+GGG 0.435286 2_2:+23662047 Msa0244860:CDS
CCCCTTAGACAGTACTTGGC+AGG 0.439188 2_2:+23660735 Msa0244860:CDS
ATAGGAACATACATAATAGA+TGG 0.443496 2_2:-23664029 None:intergenic
GGAGTTCAAAATTGCAGATC+GGG 0.444432 2_2:+23663981 Msa0244860:CDS
ACATGTTCCTTTGTGTTACT+CGG 0.451425 2_2:-23659484 None:intergenic
TGTTCCTATAGCTGAGTTAA+GGG 0.455270 2_2:+23664043 Msa0244860:CDS
TAATGAAACTATTGCAAGAA+AGG 0.457497 2_2:+23663847 Msa0244860:CDS
AGACTCCGAGGCAGCAGAGT+TGG 0.457827 2_2:+23663899 Msa0244860:CDS
AAGTGAGTGAAGATGAAGAT+TGG 0.458660 2_2:+23662046 Msa0244860:CDS
AGGCAACAAACGCGCATCTT+GGG 0.460252 2_2:+23660704 Msa0244860:CDS
GAGGCAACAAACGCGCATCT+TGG 0.466032 2_2:+23660703 Msa0244860:CDS
AAATTCCAACTCTGCTGCCT+CGG 0.470562 2_2:-23663904 None:intergenic
CTGGATTCTCTTAGTTCAGT+TGG 0.473153 2_2:+23660249 Msa0244860:CDS
ATTTCCCCTTAGACAGTACT+TGG 0.477866 2_2:+23660731 Msa0244860:CDS
AAAGTCTACATAAAACTGAT+AGG 0.478611 2_2:+23659692 Msa0244860:CDS
GGTAATAATACATTAATGTA+TGG 0.479759 2_2:+23664128 Msa0244860:three_prime_UTR
TTCCTCCTGAAGACCAAGGC+TGG 0.484945 2_2:+23660644 Msa0244860:CDS
CAAGTCCCATTTCTTTCGAA+AGG 0.486339 2_2:-23662420 None:intergenic
TATAGCTGAGTTAAGGGAAA+AGG 0.488966 2_2:+23664049 Msa0244860:CDS
GAAAATTTATAACTTCAAAC+CGG 0.490601 2_2:-23664183 None:intergenic
AGAACAATGATAGAATAAAA+GGG 0.492512 2_2:+23662163 Msa0244860:CDS
GACGCCCTTTCGAAAGAAAT+GGG 0.493793 2_2:+23662415 Msa0244860:CDS
AGTAATGCAGCATCGCCGTC+AGG 0.494282 2_2:-23661236 None:intergenic
ACCAGAAATACCTCCACACT+TGG 0.495132 2_2:+23663069 Msa0244860:CDS
AAGTCCCATTTCTTTCGAAA+GGG 0.495232 2_2:-23662419 None:intergenic
CTTCTGTGTTGATGCCACCA+TGG 0.498525 2_2:-23661331 None:intergenic
TACTAAATCAAGAAGAAGAA+TGG 0.501022 2_2:+23661255 Msa0244860:CDS
GTACAATGAAATGAAGCAAC+CGG 0.503191 2_2:+23664164 Msa0244860:three_prime_UTR
CTCCAGCGTAAGCATCGATA+AGG 0.509397 2_2:-23659921 None:intergenic
TTATTTGAAGAATCCTTGGT+TGG 0.511651 2_2:-23659652 None:intergenic
ATCCATCATTCAATCGAAAA+GGG 0.514565 2_2:+23658213 Msa0244860:five_prime_UTR
ACGACCACATGCTATTTCCC+CGG 0.515781 2_2:-23661486 None:intergenic
ATCGATGCTTACGCTGGAGA+AGG 0.517287 2_2:+23659925 Msa0244860:CDS
GTCACAGTCGAGAGAAGATT+AGG 0.517689 2_2:+23660151 Msa0244860:intron
TTCTACATCACAACATGTGC+AGG 0.518102 2_2:+23662925 Msa0244860:CDS
TCCATTTAAAGACCACATGC+TGG 0.518896 2_2:-23661393 None:intergenic
AAGAGAATCCAGTTGGTGAA+TGG 0.519329 2_2:-23660238 None:intergenic
GGTCGTTAGAATAATATTCA+AGG 0.522036 2_2:-23661445 None:intergenic
AGAGAAGATTAGGCCAGAAA+AGG 0.525646 2_2:+23660161 Msa0244860:CDS
ACGTAAATAGATTAATATGC+GGG 0.526006 2_2:+23659426 Msa0244860:exon
AAGGAGGATCAAGACATCTC+TGG 0.528780 2_2:-23660509 None:intergenic
ACATAGATTCTGATGAATCC+GGG 0.537290 2_2:+23661468 Msa0244860:CDS
ACATACCTAGTATCAACATT+GGG 0.539661 2_2:+23658164 Msa0244860:five_prime_UTR
AAAGGAACATGTCAAGTTGA+AGG 0.541741 2_2:+23659495 Msa0244860:CDS
GGTTCTGTCATTGCTACAGA+TGG 0.542741 2_2:+23660282 Msa0244860:CDS
ACCTGCCAAGTACTGTCTAA+GGG 0.543897 2_2:-23660736 None:intergenic
AACCTTATCGATGCTTACGC+TGG 0.549016 2_2:+23659919 Msa0244860:CDS
CACATACCTAGTATCAACAT+TGG 0.553170 2_2:+23658163 Msa0244860:five_prime_UTR
AATACTTGCAAAACCAGCCT+TGG 0.554312 2_2:-23660657 None:intergenic
ATGCTTACGCTGGAGAAGGT+TGG 0.555448 2_2:+23659929 Msa0244860:CDS
TATTCCTTGTTCTTCTCTGG+AGG 0.556906 2_2:-23659870 None:intergenic
TGGAGTTCAAAATTGCAGAT+CGG 0.560560 2_2:+23663980 Msa0244860:CDS
GAATGTTCTATGTTAGATGA+AGG 0.561374 2_2:+23661416 Msa0244860:CDS
GAGAAGAGAAAAGGAGTCTG+AGG 0.568921 2_2:+23662086 Msa0244860:CDS
TCTTCACTCACTTGTTCACA+AGG 0.570005 2_2:-23662036 None:intergenic
GAAAATTATGATTCATGTGG+TGG 0.575125 2_2:+23664246 Msa0244860:three_prime_UTR
AACATCATCACTGACCTCCA+TGG 0.580335 2_2:-23663820 None:intergenic
TGACTATAATCCAGAGAGGA+AGG 0.581091 2_2:+23661301 Msa0244860:CDS
GGGAAATAGCATGTGGTCGT+AGG 0.581992 2_2:+23661489 Msa0244860:CDS
AGGAAAGGTGAGATAGATGT+TGG 0.583618 2_2:+23659760 Msa0244860:CDS
ACAACATGTGCAGGAAGAAG+AGG 0.585587 2_2:+23662934 Msa0244860:CDS
AATGGGACTTGATGCTGCAA+AGG 0.589378 2_2:+23662432 Msa0244860:CDS
AATGATATTATACTCTGTGA+TGG 0.590683 2_2:+23660465 Msa0244860:CDS
GATAGATGTTGGTGATCAAG+AGG 0.591239 2_2:+23659771 Msa0244860:CDS
TTTGTTTAGCTTCAAGAAGG+AGG 0.591319 2_2:+23662863 Msa0244860:intron
CAAGTAGCACAAAACACCAA+AGG 0.591492 2_2:+23659539 Msa0244860:CDS
TCTCTTAATCATGATAGGAA+AGG 0.591668 2_2:+23659745 Msa0244860:CDS
CAAGTAGTTCTTCCAGCATG+TGG 0.596343 2_2:+23661381 Msa0244860:CDS
TTCCAATAAGGTGCCAACCA+AGG 0.598203 2_2:+23659639 Msa0244860:CDS
CTGTAAGATAGAAATATTGG+AGG 0.603472 2_2:+23660684 Msa0244860:CDS
CCAGTTGGTGAATGGCATCA+CGG 0.605629 2_2:-23660230 None:intergenic
AAATCAAAATCTCATAAACT+CGG 0.606698 2_2:+23659577 Msa0244860:CDS
TACGCTGGAGAAGGTTGGAA+AGG 0.611602 2_2:+23659934 Msa0244860:CDS
CATGGTGGCATCAACACAGA+AGG 0.612139 2_2:+23661332 Msa0244860:CDS
GAAGAAGCTGCTATTCCTGA+CGG 0.614571 2_2:+23661221 Msa0244860:CDS
TATCACTTCTAAGAACTCAA+AGG 0.617285 2_2:+23662901 Msa0244860:CDS
CGGAGGTTGCACAAATGTGT+CGG 0.617900 2_2:+23659597 Msa0244860:CDS
CTGAACTAAGAGAATCCAGT+TGG 0.618760 2_2:-23660245 None:intergenic
CTGTCTTCAGTCTCCAAAGG+AGG 0.618854 2_2:-23660525 None:intergenic
TCACTGTCTTCAGTCTCCAA+AGG 0.619248 2_2:-23660528 None:intergenic
CGGATTCATCAGAATCTATG+TGG 0.622262 2_2:-23661466 None:intergenic
AGGAATTCAACAAAGATACA+AGG 0.629477 2_2:+23659712 Msa0244860:CDS
CCTGCCAAGTACTGTCTAAG+GGG 0.632462 2_2:-23660735 None:intergenic
GAGAGGAAGGAAGAAAGCCA+TGG 0.637015 2_2:+23661314 Msa0244860:CDS
ACTGAGAAGTTAAATAACCA+AGG 0.637280 2_2:+23659451 Msa0244860:CDS
CTTGGGAGAAAATGGCAACA+AGG 0.637413 2_2:+23663087 Msa0244860:CDS
TCATGTGAAAACCTAAAACA+AGG 0.637563 2_2:-23662207 None:intergenic
TCGTCTTCAGGATCATCTGA+CGG 0.640667 2_2:-23661278 None:intergenic
TACGTAAATAGATTAATATG+CGG 0.644745 2_2:+23659425 Msa0244860:exon
CCAGAAATACCTCCACACTT+GGG 0.646657 2_2:+23663070 Msa0244860:CDS
GAGAAGGTTGGAAAGGTCAG+AGG 0.649501 2_2:+23659941 Msa0244860:CDS
AGGAAGGAAGAAAGCCATGG+TGG 0.650653 2_2:+23661317 Msa0244860:CDS
GTGAGTGAAGATGAAGATTG+GGG 0.652036 2_2:+23662048 Msa0244860:CDS
AACCAGCCTTGGTCTTCAGG+AGG 0.652976 2_2:-23660646 None:intergenic
CATAGATTCTGATGAATCCG+GGG 0.669012 2_2:+23661469 Msa0244860:CDS
TACAAAACCGAGTAACACAA+AGG 0.669844 2_2:+23659477 Msa0244860:CDS
GCTTCCTCCAAAATCCGTGA+AGG 0.670380 2_2:+23662393 Msa0244860:CDS
GCAGTTCCTCCTGAAGACCA+AGG 0.671156 2_2:+23660640 Msa0244860:intron
TCACTCACTTGTTCACAAGG+TGG 0.675741 2_2:-23662033 None:intergenic
TGCATTTGAAGGAGACTCCG+AGG 0.681549 2_2:+23663887 Msa0244860:CDS
TCAAAATCTCATAAACTCGG+AGG 0.684427 2_2:+23659580 Msa0244860:CDS
ATGGAAAATTATGATTCATG+TGG 0.684751 2_2:+23664243 Msa0244860:three_prime_UTR
TTATCTTCAGGATTCCATGG+AGG 0.700522 2_2:+23663806 Msa0244860:intron
GAATCCGGGGAAATAGCATG+TGG 0.711313 2_2:+23661482 Msa0244860:CDS
AATTCAACAAAGATACAAGG+AGG 0.723347 2_2:+23659715 Msa0244860:CDS
ACGATGACTATAATCCAGAG+AGG 0.733914 2_2:+23661297 Msa0244860:CDS
TACGCCTCCAGAGAAGAACA+AGG 0.736747 2_2:+23659866 Msa0244860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTGATTTAAAACAAA+AGG - chr2_2:23658467-23658486 None:intergenic 10.0%
!! TTTGTAAAAAAAAATTTACA+CGG + chr2_2:23660917-23660936 Msa0244860:intron 10.0%
!!! GAAAAAACATTTATTATTTT+TGG - chr2_2:23661175-23661194 None:intergenic 10.0%
!! ATAAATGATCATATAAATAA+AGG + chr2_2:23661659-23661678 Msa0244860:intron 10.0%
!!! TCTTTGTATGATTTTATATA+TGG + chr2_2:23659018-23659037 Msa0244860:intron 15.0%
!! CTGTATATAATCATTAAAAA+TGG + chr2_2:23659181-23659200 Msa0244860:intron 15.0%
!!! TATCTTATTATTTTCTAACA+TGG + chr2_2:23659237-23659256 Msa0244860:intron 15.0%
!! GTTAGATCATTAAAAATATT+AGG - chr2_2:23661028-23661047 None:intergenic 15.0%
!!! TTTTATAATTTATCTTGAAG+AGG + chr2_2:23661834-23661853 Msa0244860:intron 15.0%
!!! TTTAAATATTTGTTTTCAGT+TGG - chr2_2:23662300-23662319 None:intergenic 15.0%
!! CACTAATAAAAGAAAAAAAA+AGG - chr2_2:23662708-23662727 None:intergenic 15.0%
!! AATTAAACAATTCTTACAAA+AGG - chr2_2:23662732-23662751 None:intergenic 15.0%
!!! TAGTTTTAAATCCTATAATA+AGG + chr2_2:23662768-23662787 Msa0244860:intron 15.0%
!!! TTAATAAATTGTTTTGTTCT+TGG + chr2_2:23662810-23662829 Msa0244860:intron 15.0%
!!! CTTTTTTTTTTACATTTAAC+AGG - chr2_2:23663574-23663593 None:intergenic 15.0%
!! ACTAAATAAAAAACAGTTAT+TGG - chr2_2:23663673-23663692 None:intergenic 15.0%
!! TACGTAAATAGATTAATATG+CGG + chr2_2:23659425-23659444 Msa0244860:exon 20.0%
!! AAATCAAAATCTCATAAACT+CGG + chr2_2:23659577-23659596 Msa0244860:CDS 20.0%
!! TAATAACTAACAATTCAAGA+AGG - chr2_2:23660065-23660084 None:intergenic 20.0%
!!! GTTTTTTCTGTCAAAAATTA+AGG + chr2_2:23661187-23661206 Msa0244860:intron 20.0%
!! AAAAATTAAGGATGTATTCA+AGG + chr2_2:23661199-23661218 Msa0244860:intron 20.0%
!!! ATAAAGGTACTATTTAAAAC+AGG + chr2_2:23661675-23661694 Msa0244860:intron 20.0%
!!! TTTGTTTTATCTGTTGTTAT+AGG - chr2_2:23661760-23661779 None:intergenic 20.0%
!!! TTATGAAAATAAGTTGAAAC+CGG + chr2_2:23661857-23661876 Msa0244860:intron 20.0%
!! CTATCATTGTTCTTATTATT+CGG - chr2_2:23662156-23662175 None:intergenic 20.0%
!! AAGAACAATGATAGAATAAA+AGG + chr2_2:23662162-23662181 Msa0244860:CDS 20.0%
!! AGAACAATGATAGAATAAAA+GGG + chr2_2:23662163-23662182 Msa0244860:CDS 20.0%
!! GGTAATAATACATTAATGTA+TGG + chr2_2:23664128-23664147 Msa0244860:three_prime_UTR 20.0%
!! GAAAATTTATAACTTCAAAC+CGG - chr2_2:23664186-23664205 None:intergenic 20.0%
!!! CATATTTTCATTTTGTTCTA+TGG + chr2_2:23664224-23664243 Msa0244860:three_prime_UTR 20.0%
! ATGGATAGGAAATTGAAATT+GGG - chr2_2:23658199-23658218 None:intergenic 25.0%
! CTGAAATTGAAGAGAAAATA+TGG - chr2_2:23658338-23658357 None:intergenic 25.0%
!! CATATTTTCTCTTCAATTTC+AGG + chr2_2:23658336-23658355 Msa0244860:five_prime_UTR 25.0%
!!! TTGTTTTGGATTTTTACTTG+TGG + chr2_2:23658400-23658419 Msa0244860:intron 25.0%
!!! TGTTTTGGATTTTTACTTGT+GGG + chr2_2:23658401-23658420 Msa0244860:intron 25.0%
! ATAAAACGAAAACGAATGAA+TGG - chr2_2:23659100-23659119 None:intergenic 25.0%
!! ATAAGTAGTTCTTTGACTTA+TGG - chr2_2:23659265-23659284 None:intergenic 25.0%
! TTACTATTATGACTGTATCA+GGG + chr2_2:23659398-23659417 Msa0244860:intron 25.0%
! ACGTAAATAGATTAATATGC+GGG + chr2_2:23659426-23659445 Msa0244860:exon 25.0%
!!! TCTTTTATTTGAAGAATCCT+TGG - chr2_2:23659659-23659678 None:intergenic 25.0%
! AAAGTCTACATAAAACTGAT+AGG + chr2_2:23659692-23659711 Msa0244860:CDS 25.0%
! AAACTTCTCTTAATCATGAT+AGG + chr2_2:23659740-23659759 Msa0244860:CDS 25.0%
!! ATCTCATTCTATGGATTAAA+AGG - chr2_2:23660034-23660053 None:intergenic 25.0%
! AAAAATGTTTCAACACAATG+AGG - chr2_2:23660382-23660401 None:intergenic 25.0%
! CAGAGTATAATATCATTATC+TGG - chr2_2:23660462-23660481 None:intergenic 25.0%
! AATGATATTATACTCTGTGA+TGG + chr2_2:23660465-23660484 Msa0244860:CDS 25.0%
! TGACTGTAAGATAGAAATAT+TGG + chr2_2:23660681-23660700 Msa0244860:CDS 25.0%
! CTTAAAAGTCATGCAAATAA+TGG - chr2_2:23660840-23660859 None:intergenic 25.0%
!!! ATTTGCATGACTTTTAAGTT+AGG + chr2_2:23660842-23660861 Msa0244860:intron 25.0%
! ATCAGTTAATCATAAACTGT+TGG - chr2_2:23660897-23660916 None:intergenic 25.0%
! GAAGTAAAAATCTGAAGATT+TGG - chr2_2:23660994-23661013 None:intergenic 25.0%
!! AGATTTTTACTTCCTTCTAT+TGG + chr2_2:23661001-23661020 Msa0244860:intron 25.0%
! AAAATATTAGGACCAATAGA+AGG - chr2_2:23661016-23661035 None:intergenic 25.0%
! GAAGTGAAAATCAAAATACT+TGG - chr2_2:23661141-23661160 None:intergenic 25.0%
!!! ATTATTTTTGGACCAATAGA+AGG - chr2_2:23661163-23661182 None:intergenic 25.0%
! TACTAAATCAAGAAGAAGAA+TGG + chr2_2:23661255-23661274 Msa0244860:CDS 25.0%
! TCAAATAAGTTAATCCAAAC+CGG + chr2_2:23661956-23661975 Msa0244860:intron 25.0%
!!! ATTTAAGTTCCTATCTTTTC+AGG + chr2_2:23661990-23662009 Msa0244860:intron 25.0%
! TTATCGAACATGTTAATAAC+AGG - chr2_2:23662601-23662620 None:intergenic 25.0%
!! ACAGTAATTTTTGCAATCTT+CGG - chr2_2:23662968-23662987 None:intergenic 25.0%
!! CATTTCAATGTTTTATCTTC+AGG + chr2_2:23663794-23663813 Msa0244860:intron 25.0%
! TAATGAAACTATTGCAAGAA+AGG + chr2_2:23663847-23663866 Msa0244860:CDS 25.0%
! ATAGGAACATACATAATAGA+TGG - chr2_2:23664032-23664051 None:intergenic 25.0%
! ATGGAAAATTATGATTCATG+TGG + chr2_2:23664243-23664262 Msa0244860:three_prime_UTR 25.0%
ACATACCTAGTATCAACATT+GGG + chr2_2:23658164-23658183 Msa0244860:five_prime_UTR 30.0%
GATGGATAGGAAATTGAAAT+TGG - chr2_2:23658200-23658219 None:intergenic 30.0%
!!! TTTTCGATTGAATGATGGAT+AGG - chr2_2:23658213-23658232 None:intergenic 30.0%
TATCCATCATTCAATCGAAA+AGG + chr2_2:23658212-23658231 Msa0244860:five_prime_UTR 30.0%
ATCCATCATTCAATCGAAAA+GGG + chr2_2:23658213-23658232 Msa0244860:five_prime_UTR 30.0%
!!! TCAGGTTAGTTTTGTTTCAT+TGG + chr2_2:23658354-23658373 Msa0244860:intron 30.0%
!! GTTTTGGATTTTTACTTGTG+GGG + chr2_2:23658402-23658421 Msa0244860:intron 30.0%
ATTCATCATTCATGTGCAAA+AGG - chr2_2:23658444-23658463 None:intergenic 30.0%
CAATCAATTCAAGCAAATCA+TGG - chr2_2:23658661-23658680 None:intergenic 30.0%
CTCATATTGTGATGTTTACT+TGG + chr2_2:23658685-23658704 Msa0244860:intron 30.0%
!!! TACTTGGTGATGTTACATTT+TGG + chr2_2:23658701-23658720 Msa0244860:intron 30.0%
! ATTTTACGCAGAATTGAGAA+GGG + chr2_2:23658855-23658874 Msa0244860:intron 30.0%
ACAAAGATGAGAGAGTTAAT+AGG - chr2_2:23659005-23659024 None:intergenic 30.0%
!! AGGACTTGATGATGTAATTT+CGG + chr2_2:23659158-23659177 Msa0244860:intron 30.0%
CTTACTATTATGACTGTATC+AGG + chr2_2:23659397-23659416 Msa0244860:intron 30.0%
ACTGAGAAGTTAAATAACCA+AGG + chr2_2:23659451-23659470 Msa0244860:CDS 30.0%
TTATTTGAAGAATCCTTGGT+TGG - chr2_2:23659655-23659674 None:intergenic 30.0%
AGGAATTCAACAAAGATACA+AGG + chr2_2:23659712-23659731 Msa0244860:CDS 30.0%
AATTCAACAAAGATACAAGG+AGG + chr2_2:23659715-23659734 Msa0244860:CDS 30.0%
TCTCTTAATCATGATAGGAA+AGG + chr2_2:23659745-23659764 Msa0244860:CDS 30.0%
ACATTCAAAAACGTAAGAGA+AGG + chr2_2:23659797-23659816 Msa0244860:CDS 30.0%
CTCATAAAAATAGCGATACA+GGG - chr2_2:23660356-23660375 None:intergenic 30.0%
TCTCATAAAAATAGCGATAC+AGG - chr2_2:23660357-23660376 None:intergenic 30.0%
AATTTGCACAGAATATCTAG+AGG - chr2_2:23660419-23660438 None:intergenic 30.0%
GTTCAATCTTTAATGTGACA+CGG + chr2_2:23660579-23660598 Msa0244860:intron 30.0%
CTGTAAGATAGAAATATTGG+AGG + chr2_2:23660684-23660703 Msa0244860:CDS 30.0%
TTTGGTTGTGCATGAAAAAA+GGG - chr2_2:23660976-23660995 None:intergenic 30.0%
ATTTGGTTGTGCATGAAAAA+AGG - chr2_2:23660977-23660996 None:intergenic 30.0%
! TGATTTTCACTTCCTTCTAT+TGG + chr2_2:23661148-23661167 Msa0244860:intron 30.0%
GAATGTTCTATGTTAGATGA+AGG + chr2_2:23661416-23661435 Msa0244860:CDS 30.0%
GGTCGTTAGAATAATATTCA+AGG - chr2_2:23661448-23661467 None:intergenic 30.0%
TGAAATCTTTAGCAGTCATA+CGG + chr2_2:23661599-23661618 Msa0244860:intron 30.0%
AAGTACTTGTGATACTGTTT+GGG - chr2_2:23661920-23661939 None:intergenic 30.0%
TAAGTACTTGTGATACTGTT+TGG - chr2_2:23661921-23661940 None:intergenic 30.0%
TAGGAACTTAAATGAAACCT+TGG - chr2_2:23661983-23662002 None:intergenic 30.0%
CAAACATTTCCTGAAAAGAT+AGG - chr2_2:23662002-23662021 None:intergenic 30.0%
!! CTATCTTTTCAGGAAATGTT+TGG + chr2_2:23662000-23662019 Msa0244860:intron 30.0%
!! TTTTCAGGAAATGTTTGGAA+AGG + chr2_2:23662005-23662024 Msa0244860:intron 30.0%
AGAATAAAAGGGAATTCTTC+AGG + chr2_2:23662174-23662193 Msa0244860:CDS 30.0%
!!! GCATAAAAAGACCTTGTTTT+AGG + chr2_2:23662196-23662215 Msa0244860:CDS 30.0%
TCATGTGAAAACCTAAAACA+AGG - chr2_2:23662210-23662229 None:intergenic 30.0%
GAGATGGATGCAAATTTATA+GGG - chr2_2:23662511-23662530 None:intergenic 30.0%
!! GAGTTATTTGCATTGCTTTT+TGG + chr2_2:23662535-23662554 Msa0244860:intron 30.0%
CATGTTAATAACAGGAAGTT+TGG - chr2_2:23662593-23662612 None:intergenic 30.0%
ATTAACATGTTCGATAATGC+AGG + chr2_2:23662604-23662623 Msa0244860:intron 30.0%
CAATAAACTTTGACACAAGT+GGG + chr2_2:23662839-23662858 Msa0244860:intron 30.0%
! TATCACTTCTAAGAACTCAA+AGG + chr2_2:23662901-23662920 Msa0244860:CDS 30.0%
! CAGTAATTTTTGCAATCTTC+GGG - chr2_2:23662967-23662986 None:intergenic 30.0%
GAAGATTGCAAAAATTACTG+TGG + chr2_2:23662967-23662986 Msa0244860:CDS 30.0%
! ACATTTTCACACTTCTTCAA+GGG - chr2_2:23662998-23663017 None:intergenic 30.0%
! AACATTTTCACACTTCTTCA+AGG - chr2_2:23662999-23663018 None:intergenic 30.0%
! AAGAAGTGTGAAAATGTTAC+TGG + chr2_2:23663001-23663020 Msa0244860:CDS 30.0%
!! TGTCGGTTTGACAAAAATAA+AGG + chr2_2:23663334-23663353 Msa0244860:intron 30.0%
CCACGAAAACTTAAGTTATT+AGG - chr2_2:23663761-23663780 None:intergenic 30.0%
! CCTAATAACTTAAGTTTTCG+TGG + chr2_2:23663758-23663777 Msa0244860:intron 30.0%
ATTGCAAGAAAGGAAAAAGA+AGG + chr2_2:23663857-23663876 Msa0244860:CDS 30.0%
! AAGGTAAGTTTTGCATTTGA+AGG + chr2_2:23663876-23663895 Msa0244860:CDS 30.0%
AGATTGAAGCAAAGATTAAC+TGG + chr2_2:23663960-23663979 Msa0244860:CDS 30.0%
! TTAAAACATTTTTGCACAGC+AGG + chr2_2:23664106-23664125 Msa0244860:three_prime_UTR 30.0%
! TAAAACATTTTTGCACAGCA+GGG + chr2_2:23664107-23664126 Msa0244860:three_prime_UTR 30.0%
GAAAATTATGATTCATGTGG+TGG + chr2_2:23664246-23664265 Msa0244860:three_prime_UTR 30.0%
!! CTTTAAGGTTCTTGTTGTGT+TGG - chr2_2:23658114-23658133 None:intergenic 35.0%
! TCGAAGCATCACAATCTTTA+AGG - chr2_2:23658129-23658148 None:intergenic 35.0%
CACATACCTAGTATCAACAT+TGG + chr2_2:23658163-23658182 Msa0244860:five_prime_UTR 35.0%
AGATTCCCAATGTTGATACT+AGG - chr2_2:23658172-23658191 None:intergenic 35.0%
! AACCCTTTTCGATTGAATGA+TGG - chr2_2:23658218-23658237 None:intergenic 35.0%
!! TCATTGGTGTTAAGTTCATG+TGG + chr2_2:23658370-23658389 Msa0244860:intron 35.0%
!! CATTGGTGTTAAGTTCATGT+GGG + chr2_2:23658371-23658390 Msa0244860:intron 35.0%
! GATTTTACGCAGAATTGAGA+AGG + chr2_2:23658854-23658873 Msa0244860:intron 35.0%
! TCATGCAATTTTGCCATTGT+TGG + chr2_2:23659064-23659083 Msa0244860:intron 35.0%
TGGAAAATGCTATCCAACAA+TGG - chr2_2:23659080-23659099 None:intergenic 35.0%
AAGAACAGACTTAGACTTAC+AGG + chr2_2:23659138-23659157 Msa0244860:intron 35.0%
TACAATATGTGTTTCTCCGT+TGG + chr2_2:23659352-23659371 Msa0244860:intron 35.0%
GTCAAGATGAATTCTTCCAA+CGG - chr2_2:23659371-23659390 None:intergenic 35.0%
TACAAAACCGAGTAACACAA+AGG + chr2_2:23659477-23659496 Msa0244860:CDS 35.0%
! ACATGTTCCTTTGTGTTACT+CGG - chr2_2:23659487-23659506 None:intergenic 35.0%
!! AAAGGAACATGTCAAGTTGA+AGG + chr2_2:23659495-23659514 Msa0244860:CDS 35.0%
!!! TGTGCTACTTGTTTTGAACT+GGG - chr2_2:23659530-23659549 None:intergenic 35.0%
!!! TTGTGCTACTTGTTTTGAAC+TGG - chr2_2:23659531-23659550 None:intergenic 35.0%
TCAAAATCTCATAAACTCGG+AGG + chr2_2:23659580-23659599 Msa0244860:CDS 35.0%
!! AGCTACTGATTCTTCCAATA+AGG + chr2_2:23659627-23659646 Msa0244860:CDS 35.0%
AGATATTCCTTGTTCTTCTC+TGG - chr2_2:23659876-23659895 None:intergenic 35.0%
!! AGTTCAGTTGGTAGTATTGA+AGG + chr2_2:23660261-23660280 Msa0244860:CDS 35.0%
CACATAGATTCTGATGAATC+CGG + chr2_2:23661467-23661486 Msa0244860:CDS 35.0%
ACATAGATTCTGATGAATCC+GGG + chr2_2:23661468-23661487 Msa0244860:CDS 35.0%
TAAGTGCCTATTAGCATAAG+CGG + chr2_2:23661703-23661722 Msa0244860:intron 35.0%
TGATAACCGCTTATGCTAAT+AGG - chr2_2:23661712-23661731 None:intergenic 35.0%
! AATAAGTTGAAACCGGCTTA+TGG + chr2_2:23661864-23661883 Msa0244860:intron 35.0%
! ATAAGTTGAAACCGGCTTAT+GGG + chr2_2:23661865-23661884 Msa0244860:intron 35.0%
ACTTAAATGAAACCTTGGTC+CGG - chr2_2:23661978-23661997 None:intergenic 35.0%
AAGTGAGTGAAGATGAAGAT+TGG + chr2_2:23662046-23662065 Msa0244860:CDS 35.0%
AGTGAGTGAAGATGAAGATT+GGG + chr2_2:23662047-23662066 Msa0244860:CDS 35.0%
AAAAAGACGGAGAAGAGAAA+AGG + chr2_2:23662077-23662096 Msa0244860:CDS 35.0%
! TTTTCAGTTGGAACTTTGAG+AGG - chr2_2:23662288-23662307 None:intergenic 35.0%
GCTTCTGGCAAATTTCATAA+TGG - chr2_2:23662348-23662367 None:intergenic 35.0%
AAGTCCCATTTCTTTCGAAA+GGG - chr2_2:23662422-23662441 None:intergenic 35.0%
GGAGATGGATGCAAATTTAT+AGG - chr2_2:23662512-23662531 None:intergenic 35.0%
AAGCAATGCAAATAACTCTG+CGG - chr2_2:23662533-23662552 None:intergenic 35.0%
CGATAATGCAGGTTAACAAA+TGG + chr2_2:23662615-23662634 Msa0244860:intron 35.0%
GTTCAAAAATGCACGTTACA+TGG + chr2_2:23662637-23662656 Msa0244860:intron 35.0%
CATGGCACTTAAAATGAGAA+AGG + chr2_2:23662655-23662674 Msa0244860:intron 35.0%
! ATGATCAGACGCCTTATTAT+AGG - chr2_2:23662782-23662801 None:intergenic 35.0%
GCAATAAACTTTGACACAAG+TGG + chr2_2:23662838-23662857 Msa0244860:intron 35.0%
!!! GGTTTTGTTTAGCTTCAAGA+AGG + chr2_2:23662860-23662879 Msa0244860:intron 35.0%
! TTTGTTTAGCTTCAAGAAGG+AGG + chr2_2:23662863-23662882 Msa0244860:intron 35.0%
AATGCACGGAATATGACATT+TGG - chr2_2:23663128-23663147 None:intergenic 35.0%
TTCTCAAGCACAAAAATGCA+CGG - chr2_2:23663142-23663161 None:intergenic 35.0%
! GTTCATGCAGTTGATATTTG+AGG + chr2_2:23663188-23663207 Msa0244860:intron 35.0%
! AATTTTACGATACCAGTCCA+TGG - chr2_2:23663261-23663280 None:intergenic 35.0%
GACTGGTATCGTAAAATTGT+TGG + chr2_2:23663263-23663282 Msa0244860:intron 35.0%
AGATGTAACATGATCTGTGT+CGG + chr2_2:23663317-23663336 Msa0244860:intron 35.0%
GACTAGATCATTGTCAAGTT+TGG - chr2_2:23663413-23663432 None:intergenic 35.0%
GACTGTAACTTCTACTTTCA+AGG + chr2_2:23663459-23663478 Msa0244860:intron 35.0%
! GTTTTATCTTCAGGATTCCA+TGG + chr2_2:23663803-23663822 Msa0244860:intron 35.0%
TGGAGTTCAAAATTGCAGAT+CGG + chr2_2:23663980-23663999 Msa0244860:CDS 35.0%
ATGTTCCTATAGCTGAGTTA+AGG + chr2_2:23664042-23664061 Msa0244860:CDS 35.0%
TGTTCCTATAGCTGAGTTAA+GGG + chr2_2:23664043-23664062 Msa0244860:CDS 35.0%
! TTTTCCCTTAACTCAGCTAT+AGG - chr2_2:23664050-23664069 None:intergenic 35.0%
TATAGCTGAGTTAAGGGAAA+AGG + chr2_2:23664049-23664068 Msa0244860:CDS 35.0%
GTACAATGAAATGAAGCAAC+CGG + chr2_2:23664164-23664183 Msa0244860:three_prime_UTR 35.0%
!!! CATGTGGGTTTGTCTTGTTT+TGG + chr2_2:23658386-23658405 Msa0244860:intron 40.0%
TGTGGGGCTTAATAAAGTCA+AGG + chr2_2:23658418-23658437 Msa0244860:intron 40.0%
AATCTCGATTGTAACCACCT+TGG - chr2_2:23658838-23658857 None:intergenic 40.0%
!! TACTCGGTTTTGTAGATCCT+TGG - chr2_2:23659471-23659490 None:intergenic 40.0%
!!! TGCTACTTGTTTTGAACTGG+GGG - chr2_2:23659528-23659547 None:intergenic 40.0%
!!! GTGCTACTTGTTTTGAACTG+GGG - chr2_2:23659529-23659548 None:intergenic 40.0%
CAAGTAGCACAAAACACCAA+AGG + chr2_2:23659539-23659558 Msa0244860:CDS 40.0%
TCAGTCTGTCTTTCTTCCTT+TGG - chr2_2:23659558-23659577 None:intergenic 40.0%
AGGAAAGGTGAGATAGATGT+TGG + chr2_2:23659760-23659779 Msa0244860:CDS 40.0%
!! GATAGATGTTGGTGATCAAG+AGG + chr2_2:23659771-23659790 Msa0244860:CDS 40.0%
TATTCCTTGTTCTTCTCTGG+AGG - chr2_2:23659873-23659892 None:intergenic 40.0%
GAAATGCGCATCTCATTCTA+TGG - chr2_2:23660043-23660062 None:intergenic 40.0%
AGAGAAGATTAGGCCAGAAA+AGG + chr2_2:23660161-23660180 Msa0244860:CDS 40.0%
!! AAGAGAATCCAGTTGGTGAA+TGG - chr2_2:23660241-23660260 None:intergenic 40.0%
CTGAACTAAGAGAATCCAGT+TGG - chr2_2:23660248-23660267 None:intergenic 40.0%
CTGGATTCTCTTAGTTCAGT+TGG + chr2_2:23660249-23660268 Msa0244860:CDS 40.0%
GCACAGAATATCTAGAGGAT+GGG - chr2_2:23660414-23660433 None:intergenic 40.0%
TGCACAGAATATCTAGAGGA+TGG - chr2_2:23660415-23660434 None:intergenic 40.0%
AATACTTGCAAAACCAGCCT+TGG - chr2_2:23660660-23660679 None:intergenic 40.0%
ATTTCCCCTTAGACAGTACT+TGG + chr2_2:23660731-23660750 Msa0244860:CDS 40.0%
GATATACACTGACAGTGTAG+AGG - chr2_2:23661079-23661098 None:intergenic 40.0%
CTTGGTTGTGTAAGAGACAA+GGG - chr2_2:23661123-23661142 None:intergenic 40.0%
ACTTGGTTGTGTAAGAGACA+AGG - chr2_2:23661124-23661143 None:intergenic 40.0%
GGATTATAGTCATCGTCTTC+AGG - chr2_2:23661293-23661312 None:intergenic 40.0%
ACGATGACTATAATCCAGAG+AGG + chr2_2:23661297-23661316 Msa0244860:CDS 40.0%
TGACTATAATCCAGAGAGGA+AGG + chr2_2:23661301-23661320 Msa0244860:CDS 40.0%
TCCAGCATGTGGTCTTTAAA+TGG + chr2_2:23661392-23661411 Msa0244860:CDS 40.0%
TCCATTTAAAGACCACATGC+TGG - chr2_2:23661396-23661415 None:intergenic 40.0%
CGGATTCATCAGAATCTATG+TGG - chr2_2:23661469-23661488 None:intergenic 40.0%
CATAGATTCTGATGAATCCG+GGG + chr2_2:23661469-23661488 Msa0244860:CDS 40.0%
TTATGACATGTCCCATAAGC+CGG - chr2_2:23661879-23661898 None:intergenic 40.0%
GTGAGTGAAGATGAAGATTG+GGG + chr2_2:23662048-23662067 Msa0244860:CDS 40.0%
! GTTTTCACATGATGCAGTTG+AGG + chr2_2:23662218-23662237 Msa0244860:CDS 40.0%
GCTCATTCTCTGCAAAAACT+TGG - chr2_2:23662375-23662394 None:intergenic 40.0%
CAAGTCCCATTTCTTTCGAA+AGG - chr2_2:23662423-23662442 None:intergenic 40.0%
! AAATCTGACTCGAGACTCTA+AGG - chr2_2:23662463-23662482 None:intergenic 40.0%
TTCTACATCACAACATGTGC+AGG + chr2_2:23662925-23662944 Msa0244860:CDS 40.0%
!!! TCTGGTCGCTTTTTCTTCAA+AGG - chr2_2:23663055-23663074 None:intergenic 40.0%
! CATGCAGTTGATATTTGAGG+TGG + chr2_2:23663191-23663210 Msa0244860:intron 40.0%
ATGGTAAACCACCTATCAAG+GGG - chr2_2:23663242-23663261 None:intergenic 40.0%
CATGGTAAACCACCTATCAA+GGG - chr2_2:23663243-23663262 None:intergenic 40.0%
TCTCAGACGTTACAGCAAAA+AGG + chr2_2:23663437-23663456 Msa0244860:intron 40.0%
AACAATTTAGTCCACCTCTC+AGG - chr2_2:23663548-23663567 None:intergenic 40.0%
CCGAAAGGCTAAACTATTAG+GGG - chr2_2:23663608-23663627 None:intergenic 40.0%
! CCCCTAATAGTTTAGCCTTT+CGG + chr2_2:23663605-23663624 Msa0244860:intron 40.0%
CCCGAAAGGCTAAACTATTA+GGG - chr2_2:23663609-23663628 None:intergenic 40.0%
! CCCTAATAGTTTAGCCTTTC+GGG + chr2_2:23663606-23663625 Msa0244860:intron 40.0%
TCCCGAAAGGCTAAACTATT+AGG - chr2_2:23663610-23663629 None:intergenic 40.0%
TTATCTTCAGGATTCCATGG+AGG + chr2_2:23663806-23663825 Msa0244860:intron 40.0%
GGAGTTCAAAATTGCAGATC+GGG + chr2_2:23663981-23664000 Msa0244860:CDS 40.0%
!!! GCTACTTGTTTTGAACTGGG+GGG - chr2_2:23659527-23659546 None:intergenic 45.0%
! TTCCAATAAGGTGCCAACCA+AGG + chr2_2:23659639-23659658 Msa0244860:CDS 45.0%
ATCCTTGGTTGGCACCTTAT+TGG - chr2_2:23659644-23659663 None:intergenic 45.0%
AACCTTATCGATGCTTACGC+TGG + chr2_2:23659919-23659938 Msa0244860:CDS 45.0%
! TTGGAAAGGTCAGAGGTATG+AGG + chr2_2:23659948-23659967 Msa0244860:intron 45.0%
GTCACAGTCGAGAGAAGATT+AGG + chr2_2:23660151-23660170 Msa0244860:intron 45.0%
GGTTCTGTCATTGCTACAGA+TGG + chr2_2:23660282-23660301 Msa0244860:CDS 45.0%
AAGGAGGATCAAGACATCTC+TGG - chr2_2:23660512-23660531 None:intergenic 45.0%
GAGATGTCTTGATCCTCCTT+TGG + chr2_2:23660512-23660531 Msa0244860:CDS 45.0%
TCACTGTCTTCAGTCTCCAA+AGG - chr2_2:23660531-23660550 None:intergenic 45.0%
! ACCTGCCAAGTACTGTCTAA+GGG - chr2_2:23660739-23660758 None:intergenic 45.0%
! AACCTGCCAAGTACTGTCTA+AGG - chr2_2:23660740-23660759 None:intergenic 45.0%
GAAGAAGCTGCTATTCCTGA+CGG + chr2_2:23661221-23661240 Msa0244860:CDS 45.0%
TCGTCTTCAGGATCATCTGA+CGG - chr2_2:23661281-23661300 None:intergenic 45.0%
CAAGTAGTTCTTCCAGCATG+TGG + chr2_2:23661381-23661400 Msa0244860:CDS 45.0%
AGTTAATCCAAACCGGACCA+AGG + chr2_2:23661963-23661982 Msa0244860:intron 45.0%
AATGAAACCTTGGTCCGGTT+TGG - chr2_2:23661973-23661992 None:intergenic 45.0%
ATTGGGGTCCTGGAAAAAGA+CGG + chr2_2:23662064-23662083 Msa0244860:CDS 45.0%
! TCTCTTCTCCGTCTTTTTCC+AGG - chr2_2:23662075-23662094 None:intergenic 45.0%
GAGAAGAGAAAAGGAGTCTG+AGG + chr2_2:23662086-23662105 Msa0244860:CDS 45.0%
CAAAAACTTGGCGAAGCTTC+TGG - chr2_2:23662363-23662382 None:intergenic 45.0%
GACGCCCTTTCGAAAGAAAT+GGG + chr2_2:23662415-23662434 Msa0244860:CDS 45.0%
AATGGGACTTGATGCTGCAA+AGG + chr2_2:23662432-23662451 Msa0244860:CDS 45.0%
TGCAAATAACTCTGCGGAGA+TGG - chr2_2:23662527-23662546 None:intergenic 45.0%
ACAACATGTGCAGGAAGAAG+AGG + chr2_2:23662934-23662953 Msa0244860:CDS 45.0%
ACCAGAAATACCTCCACACT+TGG + chr2_2:23663069-23663088 Msa0244860:CDS 45.0%
CCAGAAATACCTCCACACTT+GGG + chr2_2:23663070-23663089 Msa0244860:CDS 45.0%
!!! TTGCCATTTTCTCCCAAGTG+TGG - chr2_2:23663085-23663104 None:intergenic 45.0%
CTTGGGAGAAAATGGCAACA+AGG + chr2_2:23663087-23663106 Msa0244860:CDS 45.0%
TGGTAAACCACCTATCAAGG+GGG - chr2_2:23663241-23663260 None:intergenic 45.0%
CCATGGTAAACCACCTATCA+AGG - chr2_2:23663244-23663263 None:intergenic 45.0%
CCTTGATAGGTGGTTTACCA+TGG + chr2_2:23663241-23663260 Msa0244860:intron 45.0%
ATAGGTGGTTTACCATGGAC+TGG + chr2_2:23663246-23663265 Msa0244860:intron 45.0%
TCTCAGCAGTGAAGAAAACG+AGG - chr2_2:23663300-23663319 None:intergenic 45.0%
ATGTCACGAATCATCCCGAA+AGG - chr2_2:23663623-23663642 None:intergenic 45.0%
TTTCGGGATGATTCGTGACA+TGG + chr2_2:23663622-23663641 Msa0244860:intron 45.0%
AACATCATCACTGACCTCCA+TGG - chr2_2:23663823-23663842 None:intergenic 45.0%
AAATTCCAACTCTGCTGCCT+CGG - chr2_2:23663907-23663926 None:intergenic 45.0%
CACGTGACTCAGAACACGTA+CGG - chr2_2:23658603-23658622 None:intergenic 50.0%
CGGAGGTTGCACAAATGTGT+CGG + chr2_2:23659597-23659616 Msa0244860:CDS 50.0%
TACGCCTCCAGAGAAGAACA+AGG + chr2_2:23659866-23659885 Msa0244860:CDS 50.0%
!! CTCCAGCGTAAGCATCGATA+AGG - chr2_2:23659924-23659943 None:intergenic 50.0%
ATCGATGCTTACGCTGGAGA+AGG + chr2_2:23659925-23659944 Msa0244860:CDS 50.0%
ATGCTTACGCTGGAGAAGGT+TGG + chr2_2:23659929-23659948 Msa0244860:CDS 50.0%
TACGCTGGAGAAGGTTGGAA+AGG + chr2_2:23659934-23659953 Msa0244860:CDS 50.0%
GAGAAGGTTGGAAAGGTCAG+AGG + chr2_2:23659941-23659960 Msa0244860:CDS 50.0%
!! CCAGTTGGTGAATGGCATCA+CGG - chr2_2:23660233-23660252 None:intergenic 50.0%
CTGTCTTCAGTCTCCAAAGG+AGG - chr2_2:23660528-23660547 None:intergenic 50.0%
! CAAAACCAGCCTTGGTCTTC+AGG - chr2_2:23660652-23660671 None:intergenic 50.0%
AGGCAACAAACGCGCATCTT+GGG + chr2_2:23660704-23660723 Msa0244860:CDS 50.0%
! CCTGCCAAGTACTGTCTAAG+GGG - chr2_2:23660738-23660757 None:intergenic 50.0%
TGGCTTTCTTCCTTCCTCTC+TGG - chr2_2:23661314-23661333 None:intergenic 50.0%
GAGAGGAAGGAAGAAAGCCA+TGG + chr2_2:23661314-23661333 Msa0244860:CDS 50.0%
AGGAAGGAAGAAAGCCATGG+TGG + chr2_2:23661317-23661336 Msa0244860:CDS 50.0%
! CTTCTGTGTTGATGCCACCA+TGG - chr2_2:23661334-23661353 None:intergenic 50.0%
CATGGTGGCATCAACACAGA+AGG + chr2_2:23661332-23661351 Msa0244860:CDS 50.0%
GAATCCGGGGAAATAGCATG+TGG + chr2_2:23661482-23661501 Msa0244860:CDS 50.0%
!! ACGACCACATGCTATTTCCC+CGG - chr2_2:23661489-23661508 None:intergenic 50.0%
GGGAAATAGCATGTGGTCGT+AGG + chr2_2:23661489-23661508 Msa0244860:CDS 50.0%
GAAGATGAAGATTGGGGTCC+TGG + chr2_2:23662054-23662073 Msa0244860:CDS 50.0%
GCTTCCTCCAAAATCCGTGA+AGG + chr2_2:23662393-23662412 Msa0244860:CDS 50.0%
!! TTTCGAAAGGGCGTCCTTCA+CGG - chr2_2:23662410-23662429 None:intergenic 50.0%
GGACGCCCTTTCGAAAGAAA+TGG + chr2_2:23662414-23662433 Msa0244860:CDS 50.0%
!! CCCAAGTGTGGAGGTATTTC+TGG - chr2_2:23663073-23663092 None:intergenic 50.0%
! CCATTTTCTCCCAAGTGTGG+AGG - chr2_2:23663082-23663101 None:intergenic 50.0%
CCTCCACACTTGGGAGAAAA+TGG + chr2_2:23663079-23663098 Msa0244860:CDS 50.0%
AGAAGATCTACCGTGGAGTG+TGG + chr2_2:23663214-23663233 Msa0244860:intron 50.0%
CTCTCAGGCAAGTTCTACAG+TGG - chr2_2:23663533-23663552 None:intergenic 50.0%
CACTGTAGAACTTGCCTGAG+AGG + chr2_2:23663531-23663550 Msa0244860:intron 50.0%
TGTAGAACTTGCCTGAGAGG+TGG + chr2_2:23663534-23663553 Msa0244860:intron 50.0%
TGCATTTGAAGGAGACTCCG+AGG + chr2_2:23663887-23663906 Msa0244860:CDS 50.0%
GTCATCGTCACTCATCGCCA+AGG + chr2_2:23658818-23658837 Msa0244860:intron 55.0%
ATCGTCACTCATCGCCAAGG+TGG + chr2_2:23658821-23658840 Msa0244860:intron 55.0%
! GCTCGTTGCAGCTCCTTTTC+TGG - chr2_2:23660177-23660196 None:intergenic 55.0%
CCGTGATGCCATTCACCAAC+TGG + chr2_2:23660230-23660249 Msa0244860:CDS 55.0%
GCAGTTCCTCCTGAAGACCA+AGG + chr2_2:23660640-23660659 Msa0244860:intron 55.0%
TTCCTCCTGAAGACCAAGGC+TGG + chr2_2:23660644-23660663 Msa0244860:CDS 55.0%
! AACCAGCCTTGGTCTTCAGG+AGG - chr2_2:23660649-23660668 None:intergenic 55.0%
GAGGCAACAAACGCGCATCT+TGG + chr2_2:23660703-23660722 Msa0244860:CDS 55.0%
CCCCTTAGACAGTACTTGGC+AGG + chr2_2:23660735-23660754 Msa0244860:CDS 55.0%
AGTAATGCAGCATCGCCGTC+AGG - chr2_2:23661239-23661258 None:intergenic 55.0%
! GCGTCCTTCACGGATTTTGG+AGG - chr2_2:23662400-23662419 None:intergenic 55.0%
!! AGGGCGTCCTTCACGGATTT+TGG - chr2_2:23662403-23662422 None:intergenic 55.0%
GAGGTGGAGAAGATCTACCG+TGG + chr2_2:23663207-23663226 Msa0244860:intron 55.0%
TCAAGGGGGTCCACACTCCA+CGG - chr2_2:23663227-23663246 None:intergenic 60.0%
GGAGTGTGGACCCCCTTGAT+AGG + chr2_2:23663228-23663247 Msa0244860:intron 60.0%
GTGTGGACCCCCTTGATAGG+TGG + chr2_2:23663231-23663250 Msa0244860:intron 60.0%
AGACTCCGAGGCAGCAGAGT+TGG + chr2_2:23663899-23663918 Msa0244860:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 23658043 23664273 23658043 ID=Msa0244860;Name=Msa0244860
chr2_2 mRNA 23658043 23664273 23658043 ID=Msa0244860-mRNA-1;Parent=Msa0244860;Name=Msa0244860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=338|0.88|1|1|0.88|0.8|10|194|693
chr2_2 exon 23658043 23658357 23658043 ID=Msa0244860-mRNA-1:exon:9031;Parent=Msa0244860-mRNA-1
chr2_2 exon 23659419 23659962 23659419 ID=Msa0244860-mRNA-1:exon:9032;Parent=Msa0244860-mRNA-1
chr2_2 exon 23660158 23660323 23660158 ID=Msa0244860-mRNA-1:exon:9033;Parent=Msa0244860-mRNA-1
chr2_2 exon 23660423 23660546 23660423 ID=Msa0244860-mRNA-1:exon:9034;Parent=Msa0244860-mRNA-1
chr2_2 exon 23660644 23660756 23660644 ID=Msa0244860-mRNA-1:exon:9035;Parent=Msa0244860-mRNA-1
chr2_2 exon 23661209 23661547 23661209 ID=Msa0244860-mRNA-1:exon:9036;Parent=Msa0244860-mRNA-1
chr2_2 exon 23662012 23662239 23662012 ID=Msa0244860-mRNA-1:exon:9037;Parent=Msa0244860-mRNA-1
chr2_2 exon 23662364 23662453 23662364 ID=Msa0244860-mRNA-1:exon:9038;Parent=Msa0244860-mRNA-1
chr2_2 exon 23662872 23663108 23662872 ID=Msa0244860-mRNA-1:exon:9039;Parent=Msa0244860-mRNA-1
chr2_2 exon 23663816 23664273 23663816 ID=Msa0244860-mRNA-1:exon:9040;Parent=Msa0244860-mRNA-1
chr2_2 five_prime_UTR 23658043 23658357 23658043 ID=Msa0244860-mRNA-1:five_prime_utr;Parent=Msa0244860-mRNA-1
chr2_2 five_prime_UTR 23659419 23659441 23659419 ID=Msa0244860-mRNA-1:five_prime_utr;Parent=Msa0244860-mRNA-1
chr2_2 CDS 23659442 23659962 23659442 ID=Msa0244860-mRNA-1:cds;Parent=Msa0244860-mRNA-1
chr2_2 CDS 23660158 23660323 23660158 ID=Msa0244860-mRNA-1:cds;Parent=Msa0244860-mRNA-1
chr2_2 CDS 23660423 23660546 23660423 ID=Msa0244860-mRNA-1:cds;Parent=Msa0244860-mRNA-1
chr2_2 CDS 23660644 23660756 23660644 ID=Msa0244860-mRNA-1:cds;Parent=Msa0244860-mRNA-1
chr2_2 CDS 23661209 23661547 23661209 ID=Msa0244860-mRNA-1:cds;Parent=Msa0244860-mRNA-1
chr2_2 CDS 23662012 23662239 23662012 ID=Msa0244860-mRNA-1:cds;Parent=Msa0244860-mRNA-1
chr2_2 CDS 23662364 23662453 23662364 ID=Msa0244860-mRNA-1:cds;Parent=Msa0244860-mRNA-1
chr2_2 CDS 23662872 23663108 23662872 ID=Msa0244860-mRNA-1:cds;Parent=Msa0244860-mRNA-1
chr2_2 CDS 23663816 23664079 23663816 ID=Msa0244860-mRNA-1:cds;Parent=Msa0244860-mRNA-1
chr2_2 three_prime_UTR 23664080 23664273 23664080 ID=Msa0244860-mRNA-1:three_prime_utr;Parent=Msa0244860-mRNA-1
Gene Sequence

>Msa0244860

ATGCGGGATACTGAGAAGTTAAATAACCAAGGATCTACAAAACCGAGTAACACAAAGGAACATGTCAAGTTGAAGGTAGATTCCCCCCAGTTCAAAACAAGTAGCACAAAACACCAAAGGAAGAAAGACAGACTGAAATCAAAATCTCATAAACTCGGAGGTTGCACAAATGTGTCGGTGAAGACAGCTACTGATTCTTCCAATAAGGTGCCAACCAAGGATTCTTCAAATAAAAGATTGATTGTTGAACAAAGTCTACATAAAACTGATAGGAATTCAACAAAGATACAAGGAGGAAAAACTTCTCTTAATCATGATAGGAAAGGTGAGATAGATGTTGGTGATCAAGAGGAAAACATTCAAAAACGTAAGAGAAGGAGAAAGAAGAAAAGACAGAAACATGATGTAGATCTTGATGATACTGTACGCCTCCAGAGAAGAACAAGGAATATCTTAATCAGAATGAAGCAAGAGCAGAACCTTATCGATGCTTACGCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTGCAACGAGCAAAAAAGCAGATTTTAAAATGCAAGCTTAGTATCCGTGATGCCATTCACCAACTGGATTCTCTTAGTTCAGTTGGTAGTATTGAAGGTTCTGTCATTGCTACAGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAATTGCAAGATAAACGAAGTTTCTCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGAGACTGAAGACATTCCTCCTGAAGACCAAGGCTGGTTTTGCAAGTATTGTGACTGTAAGATAGAAATATTGGAGGCAACAAACGCGCATCTTGGGACTCATTTCCCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATTCCTGACGGCGATGCTGCATTACTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGATGACTATAATCCAGAGAGGAAGGAAGAAAGCCATGGTGGCATCAACACAGAAGGAAATGATGAAAACGCATCTGATGATTCAAGTAGTTCTTCCAGCATGTGGTCTTTAAATGGAGAATGTTCTATGTTAGATGAAGGCATCAACCTTGAATATTATTCTAACGACCACATAGATTCTGATGAATCCGGGGAAATAGCATGTGGTCGTAGGCAGCGTAGAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGAAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGAAAAAGACGGAGAAGAGAAAAGGAGTCTGAGGCAGTTAATACTCTTATGACTTTACATGAGAGTGAAAATAAATATCCGAATAATAAGAACAATGATAGAATAAAAGGGAATTCTTCAGGCATAAAAAGACCTTGTTTTAGGTTTTCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCCGTGAAGGACGCCCTTTCGAAAGAAATGGGACTTGATGCTGCAAAGCTTCAAGAAGGAGGACAACAGCTTCAGAGTATCACTTCTAAGAACTCAAAGGATTCTACATCACAACATGTGCAGGAAGAAGAGGTTTTGAACCCGAAGATTGCAAAAATTACTGTGGTTCGTCCCTTGAAGAAGTGTGAAAATGTTACTGGCAAAGAAAAAACAAAAGCATCTAGCAGTCCTTTGAAGAAAAAGCGACCAGAAATACCTCCACACTTGGGAGAAAATGGCAACAAGGATTCCATGGAGGTCAGTGATGATGTTAGCTTAATGAAACTATTGCAAGAAAGGAAAAAGAAGGTAAGTTTTGCATTTGAAGGAGACTCCGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGACGAAAATAGATAGATTGAAGCAAAGATTAACTGGAGTTCAAAATTGCAGATCGGGTTCAGATGAAGTTCATTTGAATGAGCCATCTATTATGTATGTTCCTATAGCTGAGTTAAGGGAAAAGGTGAAATAG

Protein sequence

>Msa0244860

MRDTEKLNNQGSTKPSNTKEHVKLKVDSPQFKTSSTKHQRKKDRLKSKSHKLGGCTNVSVKTATDSSNKVPTKDSSNKRLIVEQSLHKTDRNSTKIQGGKTSLNHDRKGEIDVGDQEENIQKRKRRRKKKRQKHDVDLDDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKINEVSPDNDIILCDGTCNRAFHQRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNAHLGTHFPLDSTWQDVFKEEAAIPDGDAALLNQEEEWPSDDPEDDDYNPERKEESHGGINTEGNDENASDDSSSSSSMWSLNGECSMLDEGINLEYYSNDHIDSDESGEIACGRRQRRAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRRRREKESEAVNTLMTLHESENKYPNNKNNDRIKGNSSGIKRPCFRFSHDAVEKLRQVFAENELPPKSVKDALSKEMGLDAAKLQEGGQQLQSITSKNSKDSTSQHVQEEEVLNPKIAKITVVRPLKKCENVTGKEKTKASSSPLKKKRPEIPPHLGENGNKDSMEVSDDVSLMKLLQERKKKVSFAFEGDSEAAELEFERLSKVKTKIDRLKQRLTGVQNCRSGSDEVHLNEPSIMYVPIAELREKVK*