AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0345980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345980 MtrunA17_Chr3g0078371 97.444 1213 25 1 1 1207 1 1213 0.0 2453
Msa0345980 MtrunA17_Chr8g0355251 75.997 1179 262 6 44 1205 1 1175 0.0 1800
Msa0345980 MtrunA17_Chr7g0244991 57.282 1133 427 8 109 1186 137 1267 0.0 1304
Msa0345980 MtrunA17_Chr5g0415271 36.964 1120 637 21 115 1183 24 1125 0.0 722
Msa0345980 MtrunA17_Chr8g0363911 36.824 1146 641 21 115 1204 44 1162 0.0 707
Msa0345980 MtrunA17_Chr4g0062251 36.813 1073 602 16 114 1127 38 1093 0.0 684
Msa0345980 MtrunA17_Chr2g0329991 35.112 1162 654 21 114 1196 40 1180 0.0 680
Msa0345980 MtrunA17_Chr8g0342811 35.548 1159 647 23 114 1193 40 1177 0.0 677
Msa0345980 MtrunA17_Chr8g0368691 35.299 1136 657 18 131 1202 67 1188 0.0 669
Msa0345980 MtrunA17_Chr6g0450601 36.460 1130 632 24 114 1172 37 1151 0.0 668
Msa0345980 MtrunA17_Chr3g0091611 36.094 1111 647 17 114 1172 35 1134 0.0 656
Msa0345980 MtrunA17_Chr0c05g0492131 35.721 1117 646 19 114 1172 33 1135 0.0 652
Msa0345980 MtrunA17_Chr2g0324791 33.272 1088 646 21 115 1184 3 1028 0.0 566
Msa0345980 MtrunA17_Chr1g0173111 23.429 525 262 15 415 928 380 775 8.97e-18 89.4
Msa0345980 MtrunA17_Chr8g0382071 23.228 508 252 16 434 928 396 778 1.69e-17 88.6
Msa0345980 MtrunA17_Chr8g0346461 24.670 531 288 17 485 980 352 805 2.86e-16 84.7
Msa0345980 MtrunA17_Chr4g0020551 23.772 509 246 18 437 928 330 713 1.58e-14 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0345980 AT5G04930.1 69.231 1131 332 10 67 1191 26 1146 0.0 1656
Msa0345980 AT1G59820.1 36.135 1154 655 23 99 1197 20 1146 0.0 716
Msa0345980 AT3G27870.1 36.145 1162 655 20 114 1207 37 1179 0.0 709
Msa0345980 AT1G68710.2 36.413 1115 644 19 114 1172 41 1146 0.0 697
Msa0345980 AT1G68710.1 36.413 1115 644 19 114 1172 41 1146 0.0 697
Msa0345980 AT1G26130.2 35.869 1157 664 21 114 1206 41 1183 0.0 692
Msa0345980 AT1G26130.4 35.869 1157 664 21 114 1206 41 1183 0.0 692
Msa0345980 AT1G26130.3 35.869 1157 664 21 114 1206 41 1183 0.0 692
Msa0345980 AT1G54280.2 36.104 1155 636 20 115 1185 41 1177 0.0 692
Msa0345980 AT1G54280.3 36.104 1155 636 20 115 1185 41 1177 0.0 692
Msa0345980 AT1G54280.1 36.104 1155 636 20 115 1185 41 1177 0.0 692
Msa0345980 AT1G26130.1 35.800 1162 657 21 114 1206 41 1182 0.0 692
Msa0345980 AT3G25610.1 37.243 1117 629 21 114 1172 39 1141 0.0 691
Msa0345980 AT3G13900.1 35.993 1153 638 23 115 1185 41 1175 0.0 689
Msa0345980 AT1G68710.3 35.583 1141 644 20 114 1172 41 1172 0.0 682
Msa0345980 AT1G17500.2 35.166 1146 659 24 114 1196 40 1164 0.0 677
Msa0345980 AT1G17500.1 35.166 1146 659 24 114 1196 40 1164 0.0 677
Msa0345980 AT1G72700.1 34.459 1155 667 20 114 1196 40 1176 0.0 671
Msa0345980 AT1G72700.3 34.459 1155 667 20 114 1196 40 1176 0.0 671
Msa0345980 AT1G72700.2 34.459 1155 667 20 114 1196 40 1176 0.0 671
Msa0345980 AT1G13210.1 35.613 1126 648 22 114 1177 37 1147 0.0 664
Msa0345980 AT3G27870.2 38.533 968 524 15 114 1028 37 986 0.0 655
Msa0345980 AT3G13900.2 38.519 932 484 21 115 973 41 956 0.0 600
Msa0345980 AT3G27870.3 35.189 1006 567 18 269 1207 1 988 0.0 581
Msa0345980 AT5G44240.2 32.973 1110 658 22 115 1207 3 1043 1.65e-179 558
Msa0345980 AT5G44240.1 32.973 1110 658 22 115 1207 35 1075 5.77e-179 558
Msa0345980 AT3G13900.3 37.013 924 486 22 115 969 41 937 3.03e-177 549
Msa0345980 AT4G00900.2 24.277 346 196 12 652 980 505 801 2.39e-14 79.0
Msa0345980 AT4G00900.1 24.277 346 196 12 652 980 505 801 2.39e-14 79.0
Msa0345980 AT1G07670.2 22.935 811 455 35 203 980 132 805 2.65e-14 78.6
Msa0345980 AT1G07670.1 22.935 811 455 35 203 980 132 805 2.65e-14 78.6

Find 225 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTCAACTTGCGGTATT+TGG 0.160646 3_1:+5820383 Msa0345980:CDS
TCCTTGTTCTTGTCCTATTT+TGG 0.168882 3_1:+5823676 Msa0345980:CDS
GACTCTTGCTGTGGTTATTT+TGG 0.180648 3_1:+5824469 Msa0345980:CDS
GAAAGCAATGTTTCCATATT+AGG 0.180689 3_1:+5822770 Msa0345980:CDS
TATTGCTTTGTACATTTCTA+TGG 0.204359 3_1:+5821216 Msa0345980:CDS
GAAAATGTTGACTTCGATTT+TGG 0.204541 3_1:-5819957 None:intergenic
TATTGATCATTTGGTGTTCT+TGG 0.208433 3_1:-5819903 None:intergenic
GGTTTAAGAACACTTGTTAT+TGG 0.228096 3_1:+5822635 Msa0345980:CDS
ATATGGATTTATGGCGAATA+TGG 0.231340 3_1:+5820790 Msa0345980:CDS
TAGGAATATATATGGATTTA+TGG 0.232364 3_1:+5820781 Msa0345980:CDS
GGATTGTGACTTACCAAAAT+AGG 0.232979 3_1:-5823689 None:intergenic
TTGAATATTAATGAAGATTT+GGG 0.249431 3_1:+5821328 Msa0345980:CDS
TTTCAAGTACTGGACTGTTC+TGG 0.249751 3_1:+5825305 Msa0345980:CDS
TGAATCTGTTGCCGTATTAT+AGG 0.254495 3_1:+5821083 Msa0345980:CDS
TGTAAAGTTGCATATACTTT+AGG 0.260617 3_1:+5825548 Msa0345980:three_prime_UTR
TTTGAATATTAATGAAGATT+TGG 0.266623 3_1:+5821327 Msa0345980:CDS
GGCAAAGCATGGTTGTATTT+TGG 0.266627 3_1:+5824387 Msa0345980:CDS
GCAGCAAGCACTGCGGTATT+TGG 0.280588 3_1:+5822710 Msa0345980:CDS
CAGATAAAGTTGAGAATAAC+AGG 0.292097 3_1:+5820492 Msa0345980:CDS
GGCCTCCACTCTTTGCATAT+TGG 0.293028 3_1:+5824408 Msa0345980:CDS
TTCTTTCATGTTTCAAGTAC+TGG 0.299241 3_1:+5825295 Msa0345980:CDS
TATCAAAGAGTTGCTGAAAA+TGG 0.301203 3_1:+5825448 Msa0345980:CDS
GAGCAGCAGGGATTAAAGTT+TGG 0.310183 3_1:+5822852 Msa0345980:CDS
TACTTATAGTCTTCAACTTC+CGG 0.312037 3_1:-5821124 None:intergenic
GATAGCAGATGCTCCTAATA+TGG 0.312880 3_1:-5822783 None:intergenic
CAAGAAACTGCTATATCTAT+TGG 0.319476 3_1:+5822893 Msa0345980:CDS
GGTGACTCATGCAGTCATTT+GGG 0.323194 3_1:+5824532 Msa0345980:CDS
TGATTACATTGCATAATATA+AGG 0.323801 3_1:+5825733 Msa0345980:three_prime_UTR
ATAGATTACTTCTCTTATCT+TGG 0.326271 3_1:-5825505 None:intergenic
TACCTCAACTTCCTGGTTAC+TGG 0.326324 3_1:+5824600 Msa0345980:CDS
ATTTACAACATAACAAACTA+TGG 0.331117 3_1:-5825679 None:intergenic
TATAAAGTTGAGGATACTTT+AGG 0.331612 3_1:-5824298 None:intergenic
AGCAGCATTGCTTCCACGTT+TGG 0.334537 3_1:+5825351 Msa0345980:CDS
GTAGGAATATATTGATCATT+TGG 0.337392 3_1:-5819912 None:intergenic
AAAGCTATGCTTAACAATTC+AGG 0.338099 3_1:+5820926 Msa0345980:CDS
AGCAGCAGGGATTAAAGTTT+GGG 0.341999 3_1:+5822853 Msa0345980:CDS
ATGCTTATCGAACGAACTTC+CGG 0.343357 3_1:+5822155 Msa0345980:CDS
AAACCGAATAGGAATATATA+TGG 0.343990 3_1:+5820773 Msa0345980:CDS
CAGATAGCTTTGATTATTGA+TGG 0.344102 3_1:+5823043 Msa0345980:CDS
AATCCATATATATTCCTATT+CGG 0.351031 3_1:-5820776 None:intergenic
CTAACTTTCACCTTCATCAT+TGG 0.351074 3_1:-5821927 None:intergenic
TTCCATGTCCATTCATTCAA+TGG 0.355952 3_1:+5820043 Msa0345980:CDS
GCACTACCAACTATTATTGT+TGG 0.369353 3_1:+5824242 Msa0345980:CDS
TGGATGTTGTTAGATGGTAT+TGG 0.375279 3_1:+5824510 Msa0345980:CDS
GGGTGACTCATGCAGTCATT+TGG 0.378922 3_1:+5824531 Msa0345980:CDS
GATGCCATACCTCAACTTCC+TGG 0.383112 3_1:+5824593 Msa0345980:CDS
GAAGACTAGGTATGCGAAAC+AGG 0.384864 3_1:+5820700 Msa0345980:CDS
TATGCCAATGCTTGTTCATC+AGG 0.385750 3_1:-5822110 None:intergenic
GTAGTTTCATTGAGAAGAAA+TGG 0.389157 3_1:+5820540 Msa0345980:CDS
TTGAATCATTGATACATCAT+TGG 0.390428 3_1:-5823481 None:intergenic
ACACAACATGGACGTAATAA+AGG 0.392648 3_1:+5822577 Msa0345980:CDS
TCCTTTCATTCTATAATCAA+TGG 0.397649 3_1:-5825704 None:intergenic
CGCAGTGCTTGCTGCTTCAT+AGG 0.401952 3_1:-5822702 None:intergenic
GTTGAAGACTATAAGTACTA+TGG 0.403402 3_1:+5821130 Msa0345980:CDS
TTCAAGTACTGGACTGTTCT+GGG 0.403555 3_1:+5825306 Msa0345980:CDS
GTGCAAACTATTAATCTTGA+TGG 0.406142 3_1:+5820665 Msa0345980:CDS
AATAGGCACAATAGTATTGC+AGG 0.407285 3_1:-5822033 None:intergenic
ACAGATTCAACTCATCCTTA+TGG 0.408175 3_1:-5821069 None:intergenic
ATAGAAATGTACAAAGCAAT+AGG 0.408488 3_1:-5821214 None:intergenic
CTTGCCAATTGCAAAAGCTC+TGG 0.412829 3_1:-5821951 None:intergenic
ATTGAGTCGCTGAGAGCAGC+AGG 0.413874 3_1:+5822839 Msa0345980:CDS
AACTGTTCAAACAAATTCCT+TGG 0.414617 3_1:-5820311 None:intergenic
CATCTGTTTGTTCTGCGGTT+TGG 0.415188 3_1:+5821038 Msa0345980:CDS
TAACAAGTGTTCTTAAACCT+AGG 0.418411 3_1:-5822631 None:intergenic
TGGCTATGGATGTTGTTAGA+TGG 0.420700 3_1:+5824504 Msa0345980:CDS
CTTCACTCTTACTCTTCCCT+AGG 0.420906 3_1:+5822614 Msa0345980:CDS
GGATGTTGTTAGATGGTATT+GGG 0.425040 3_1:+5824511 Msa0345980:CDS
GGAGCTTGTTCGTGTTGGCC+AGG 0.428817 3_1:+5821237 Msa0345980:CDS
TCCATGTCCATTCATTCAAT+GGG 0.430621 3_1:+5820044 Msa0345980:CDS
ATCGTCTTCGATCATGAAAT+AGG 0.432489 3_1:-5821260 None:intergenic
AAGGTTCAACCGAGGTATAC+TGG 0.433990 3_1:+5820734 Msa0345980:CDS
CTTGGTTGATGATATGTGAT+AGG 0.436816 3_1:-5825487 None:intergenic
AAATCAAGTTTCCTATAATA+CGG 0.447249 3_1:-5821094 None:intergenic
CATTGCAGGTTCAATGTGTT+GGG 0.447966 3_1:+5822434 Msa0345980:intron
CACATAGTCATTGATATTCA+TGG 0.453838 3_1:+5822179 Msa0345980:CDS
TCGAGTGGCTCCACTGCAAA+AGG 0.458399 3_1:+5823264 Msa0345980:CDS
TAGCAAGCATAGGAGACCTT+TGG 0.458552 3_1:+5824447 Msa0345980:CDS
CTCAGCGACTCAATTGCTTC+CGG 0.460307 3_1:-5822830 None:intergenic
GCAAGAGGAACAATTCTGTA+AGG 0.460331 3_1:+5820072 Msa0345980:CDS
CACTGGAATTATCAAAGGCT+TGG 0.461744 3_1:+5823618 Msa0345980:CDS
CTGTTCTGGGCATTGTTGCT+AGG 0.462546 3_1:+5825319 Msa0345980:CDS
GCATATGCCGCTGCTGCCTA+TGG 0.463722 3_1:+5822128 Msa0345980:CDS
AGAGGGTAGGCAAGCTGTAA+TGG 0.465745 3_1:+5823536 Msa0345980:CDS
TCAACCAACATTGTGCTTAG+AGG 0.467223 3_1:+5820842 Msa0345980:CDS
AAAAGAATGTCGGTTATACT+AGG 0.468898 3_1:+5822482 Msa0345980:CDS
CAAGCACTGCGGTATTTGGT+CGG 0.469997 3_1:+5822714 Msa0345980:CDS
TCGGGCGTGTCAACAACAAT+AGG 0.472500 3_1:-5822050 None:intergenic
GGTCAATTTACATTTGGCTA+TGG 0.472950 3_1:+5824490 Msa0345980:CDS
ACCATTGATTATAGAATGAA+AGG 0.475014 3_1:+5825703 Msa0345980:three_prime_UTR
CCTGTGAGGTATGGTTCAAA+AGG 0.476260 3_1:+5820131 Msa0345980:CDS
TAGAGATGAAGATGCAAGAT+TGG 0.476919 3_1:+5820196 Msa0345980:CDS
TCTGCACTGAAACTTTGTAT+TGG 0.477333 3_1:-5821302 None:intergenic
AACTCAATCAAAGTTACGTT+GGG 0.480410 3_1:+5825825 Msa0345980:three_prime_UTR
ATGAGTAGTTTAAACCAGTC+AGG 0.487005 3_1:+5820098 Msa0345980:CDS
GATCTTAAAGCCAATGATGA+AGG 0.488510 3_1:+5821917 Msa0345980:CDS
TATCCTCAACTTTATAGTGC+TGG 0.490459 3_1:+5824305 Msa0345980:CDS
ACCTAGTTCATTCTCCATGC+CGG 0.491233 3_1:-5821455 None:intergenic
GTTCCTCTCTTATTGATACA+TGG 0.491866 3_1:+5823594 Msa0345980:CDS
ATATGTTTCGATTCTACCGT+TGG 0.493139 3_1:+5820409 Msa0345980:CDS
TATGTGTTCTCAGATAAAAC+TGG 0.493604 3_1:+5821361 Msa0345980:CDS
GCTAGAACCCATTGAATGAA+TGG 0.494270 3_1:-5820051 None:intergenic
GTGAGCTTAAGAATACTAGT+TGG 0.496078 3_1:+5820867 Msa0345980:CDS
GGTAAACTATAACTGACATA+AGG 0.496795 3_1:-5821180 None:intergenic
CACTGTCGAGTATGTGTACA+AGG 0.498887 3_1:-5823072 None:intergenic
TAAGTACTATGGATGGGGAT+TGG 0.499992 3_1:+5821141 Msa0345980:CDS
CAACAACTGCAATAAATGAA+TGG 0.507660 3_1:+5824189 Msa0345980:CDS
TACACTTACTGAAAATAAGA+TGG 0.509982 3_1:+5821384 Msa0345980:CDS
TATGTCAGTTATAGTTTACC+AGG 0.510492 3_1:+5821183 Msa0345980:CDS
AAGCACTGCGGTATTTGGTC+GGG 0.512135 3_1:+5822715 Msa0345980:CDS
TAATCTAACAGCTTGACATC+AGG 0.512428 3_1:-5822074 None:intergenic
AGAATTCCAACAATAATAGT+TGG 0.512924 3_1:-5824248 None:intergenic
TAACAATGGTTGATACTTTG+TGG 0.514157 3_1:+5824366 Msa0345980:CDS
TTATCAACTAGTGATCCAAC+TGG 0.515769 3_1:+5820632 Msa0345980:CDS
CTTGGAGATTGTAACAAAAG+TGG 0.518691 3_1:-5819885 None:intergenic
TCTTATTGATACATGGTCAC+TGG 0.520717 3_1:+5823601 Msa0345980:CDS
CTAGATATTTGAATATCACT+AGG 0.520868 3_1:-5825403 None:intergenic
CAGAGTATTTCTCTATGTTG+CGG 0.522325 3_1:+5825577 Msa0345980:three_prime_UTR
ACATTGCAGGTTCAATGTGT+TGG 0.525171 3_1:+5822433 Msa0345980:intron
AAGACTATAAGTACTATGGA+TGG 0.525277 3_1:+5821134 Msa0345980:CDS
TCAGTAAAACTCTTTGTCAA+AGG 0.526985 3_1:+5822518 Msa0345980:CDS
TGATGTATCAATGATTCAAA+TGG 0.529532 3_1:+5823485 Msa0345980:CDS
TGAGCTTAAGAATACTAGTT+GGG 0.530573 3_1:+5820868 Msa0345980:CDS
TGCACATATGCAACACCAGT+TGG 0.534022 3_1:-5820647 None:intergenic
CAATCCTCACTTTCATTCCA+AGG 0.534867 3_1:+5820294 Msa0345980:CDS
TTAAGTGTGAGAAACCGAAT+AGG 0.534933 3_1:+5820762 Msa0345980:CDS
AAGAATACTAGTTGGGCACT+TGG 0.536283 3_1:+5820875 Msa0345980:CDS
GTGGCTCCACTGCAAAAGGC+TGG 0.537855 3_1:+5823268 Msa0345980:CDS
TCTATGGAGCTTGTTCGTGT+TGG 0.537946 3_1:+5821232 Msa0345980:CDS
AACAGCTTGACATCAGGATC+GGG 0.538262 3_1:-5822068 None:intergenic
GTCTCAAAGATGCTCTTGAA+AGG 0.539452 3_1:+5822993 Msa0345980:CDS
CTTGGTGTCGCAGTCTATTG+TGG 0.541163 3_1:+5820893 Msa0345980:CDS
TTGTTTCCCTTGTGAAGAAG+AGG 0.541963 3_1:+5823293 Msa0345980:CDS
GATGTTGGAGTTGGTATAAG+TGG 0.542521 3_1:+5823510 Msa0345980:CDS
GGTTTGGTTGAAGCGCCATA+AGG 0.544845 3_1:+5821054 Msa0345980:CDS
TATTGCAGTTGTTGAAGTGA+AGG 0.546160 3_1:-5824180 None:intergenic
GACTATAAGTACTATGGATG+GGG 0.549175 3_1:+5821136 Msa0345980:CDS
ATCGCCTGATGAACAAGCAT+TGG 0.549505 3_1:+5822106 Msa0345980:CDS
GTGAGTCTAATTTGAAGACT+AGG 0.551484 3_1:+5820687 Msa0345980:CDS
AACAAGTGTTCTTAAACCTA+GGG 0.551707 3_1:-5822630 None:intergenic
GCACTTCAGAGTTTGAAGAA+TGG 0.552085 3_1:+5822672 Msa0345980:CDS
AGTACTTGAAACATGAAAGA+AGG 0.553632 3_1:-5825293 None:intergenic
AAATGGAAGGATATTCGAGT+TGG 0.553978 3_1:+5820557 Msa0345980:CDS
CAGATGTCCTCTTCTTCACA+AGG 0.555279 3_1:-5823300 None:intergenic
TCCATCGAAAAGAAGTAGGC+TGG 0.557666 3_1:+5820952 Msa0345980:CDS
TCTAAGTTCTCTTTGTGACA+TGG 0.558340 3_1:-5820177 None:intergenic
AAAGGTGGTGGTGATTCTGA+AGG 0.562096 3_1:+5820149 Msa0345980:CDS
CAAATGGCTGATGTTGGAGT+TGG 0.562565 3_1:+5823501 Msa0345980:CDS
TGTCGTTCTTTGTTGTCGAG+TGG 0.562870 3_1:+5823249 Msa0345980:CDS
AATCACATCTGTTTGTTCTG+CGG 0.562991 3_1:+5821033 Msa0345980:CDS
GTGACTCATGCAGTCATTTG+GGG 0.564904 3_1:+5824533 Msa0345980:CDS
ATGATTCAAATGGCTGATGT+TGG 0.567389 3_1:+5823495 Msa0345980:CDS
ATTCAATGGGTTCTAGCAAG+AGG 0.567625 3_1:+5820057 Msa0345980:CDS
AGACTATAAGTACTATGGAT+GGG 0.568634 3_1:+5821135 Msa0345980:CDS
TAAACTTCAACAAGGTGTGC+CGG 0.569652 3_1:+5822811 Msa0345980:CDS
TAACAGCTTGACATCAGGAT+CGG 0.569777 3_1:-5822069 None:intergenic
CTTCGATCATGAAATAGGCC+TGG 0.570695 3_1:-5821255 None:intergenic
TTTCATTGTTAACTATCCGA+AGG 0.570789 3_1:+5825601 Msa0345980:three_prime_UTR
GTTGGTATAAGTGGACAAGA+GGG 0.570884 3_1:+5823519 Msa0345980:CDS
AGACCTTTGGACTCTTGCTG+TGG 0.571885 3_1:+5824460 Msa0345980:CDS
AAACTCAATCAAAGTTACGT+TGG 0.571942 3_1:+5825824 Msa0345980:three_prime_UTR
AATATCAATGACTATGTGGC+CGG 0.577435 3_1:-5822174 None:intergenic
TTCGATAAGCATAAAACCAT+AGG 0.579031 3_1:-5822144 None:intergenic
GTTCATCAGGCGATTCACCT+TGG 0.579840 3_1:-5822097 None:intergenic
TGGAAACATTGCTTTCAACA+TGG 0.580153 3_1:-5822763 None:intergenic
CAAGAGGAACAATTCTGTAA+GGG 0.582022 3_1:+5820073 Msa0345980:CDS
TACCAGTAACCAGGAAGTTG+AGG 0.582228 3_1:-5824602 None:intergenic
TTTGTCTATTACACTAAACA+TGG 0.584696 3_1:-5822552 None:intergenic
CAATCAGCTTCCTCAACTTG+CGG 0.585407 3_1:+5820376 Msa0345980:CDS
TGATACTTTGTGGCAAAGCA+TGG 0.585733 3_1:+5824376 Msa0345980:CDS
ACCCATTGAATGAATGGACA+TGG 0.586182 3_1:-5820045 None:intergenic
GAGCTCCATCGAAAAGAAGT+AGG 0.587843 3_1:+5820948 Msa0345980:CDS
CAAAGCTATCTGTGTTGCAA+CGG 0.587870 3_1:-5823032 None:intergenic
TTTCATTGAGAAGAAATGGA+AGG 0.588212 3_1:+5820544 Msa0345980:CDS
CTTCCAAATACCGCAAGTTG+AGG 0.589139 3_1:-5820386 None:intergenic
AATGGAGTTGAAAATGTGGA+AGG 0.590116 3_1:+5821975 Msa0345980:CDS
CGACAGTGAACATGAAGAAG+AGG 0.590828 3_1:+5823087 Msa0345980:CDS
ATGACACTAGCCATCGGAGA+TGG 0.592031 3_1:+5823325 Msa0345980:CDS
AACTTGACCGAACTCAACAC+CGG 0.593189 3_1:-5819979 None:intergenic
ACTATTGATATAGCAAGCAT+AGG 0.593863 3_1:+5824437 Msa0345980:CDS
TGTCCAGCACTATAAAGTTG+AGG 0.593916 3_1:-5824308 None:intergenic
ATGGTCACTGGAATTATCAA+AGG 0.595865 3_1:+5823613 Msa0345980:CDS
GAAACAGGAGACGGGTTCAA+AGG 0.598178 3_1:+5820715 Msa0345980:CDS
ATAGCTTTGATTATTGATGG+TGG 0.600389 3_1:+5823046 Msa0345980:CDS
GTAACCAGGAAGTTGAGGTA+TGG 0.604842 3_1:-5824597 None:intergenic
CATAAAACCATAGGCAGCAG+CGG 0.605167 3_1:-5822135 None:intergenic
AATTCCTTGGAATGAAAGTG+AGG 0.608272 3_1:-5820298 None:intergenic
AGTTGGTATAAGTGGACAAG+AGG 0.609765 3_1:+5823518 Msa0345980:CDS
ACCGGCATGGAGAATGAACT+AGG 0.612046 3_1:+5821454 Msa0345980:CDS
ACATCCTCTAAGCACAATGT+TGG 0.612946 3_1:-5820846 None:intergenic
TAGGTATGCGAAACAGGAGA+CGG 0.615809 3_1:+5820706 Msa0345980:CDS
TGAATATTAATGAAGATTTG+GGG 0.616519 3_1:+5821329 Msa0345980:CDS
CTAGGTGAATACTCAGTGCA+AGG 0.616609 3_1:+5821472 Msa0345980:CDS
TTCCAATATGCAAAGAGTGG+AGG 0.618565 3_1:-5824410 None:intergenic
AGGTATGGTTCAAAAGGTGG+TGG 0.619167 3_1:+5820137 Msa0345980:CDS
ATGGCGAATATGGAAATCGA+TGG 0.624834 3_1:+5820800 Msa0345980:CDS
AGAACTCGTACCATCTCCGA+TGG 0.625531 3_1:-5823335 None:intergenic
AGGTATGCGAAACAGGAGAC+GGG 0.626977 3_1:+5820707 Msa0345980:CDS
GATGGTAAGAAGTTATCACT+TGG 0.629993 3_1:+5820818 Msa0345980:CDS
TTTCAATGTGCAAGCATACG+AGG 0.630431 3_1:+5821409 Msa0345980:CDS
GTATAAGTGGACAAGAGGGT+AGG 0.639872 3_1:+5823523 Msa0345980:CDS
TAAGCATAGCTTTAGTCTCG+CGG 0.643603 3_1:-5820916 None:intergenic
AATAGACAAATCACACAACA+TGG 0.644458 3_1:+5822565 Msa0345980:CDS
GTGAATACATACCAGTAACC+AGG 0.645155 3_1:-5824611 None:intergenic
AAGGTGGTGGTGATTCTGAA+GGG 0.646912 3_1:+5820150 Msa0345980:CDS
CATGAATATCAATGACTATG+TGG 0.647298 3_1:-5822178 None:intergenic
AGACGATCGATTGTATGATG+AGG 0.647562 3_1:+5821276 Msa0345980:CDS
GTGAGGTATGGTTCAAAAGG+TGG 0.648541 3_1:+5820134 Msa0345980:CDS
TAACCACAGCAAGAGTCCAA+AGG 0.648616 3_1:-5824463 None:intergenic
TGACCATGTATCAATAAGAG+AGG 0.653984 3_1:-5823597 None:intergenic
AAGCAATAGGAATCATGACC+TGG 0.654082 3_1:-5821201 None:intergenic
AAAGAAGTAGGCTGGAGACG+CGG 0.659460 3_1:+5820960 Msa0345980:CDS
AGAGTGAAGATGAGTTTCTG+TGG 0.660104 3_1:-5822600 None:intergenic
ACAAACAGAACAAAAGCCAA+CGG 0.667705 3_1:-5820425 None:intergenic
GTCAAGCTGTTAGATTACCA+AGG 0.672925 3_1:+5822080 Msa0345980:CDS
ACCAAAATAGGACAAGAACA+AGG 0.674548 3_1:-5823677 None:intergenic
AAGAAATGGAGTTGAAAATG+TGG 0.674807 3_1:+5821971 Msa0345980:CDS
TTAATCAAACCAGTATACCT+CGG 0.685339 3_1:-5820743 None:intergenic
TCTGACATGACACTAGCCAT+CGG 0.686147 3_1:+5823319 Msa0345980:CDS
AGATGTCCTCTTCTTCACAA+GGG 0.686778 3_1:-5823299 None:intergenic
TTGAGTCGCTGAGAGCAGCA+GGG 0.700401 3_1:+5822840 Msa0345980:CDS
ATCGAAGATAAACTTCAACA+AGG 0.708153 3_1:+5822803 Msa0345980:CDS
GATAACAAAACAATATCACA+AGG 0.711577 3_1:-5820614 None:intergenic
GTAGATTATTGAGTACAATG+TGG 0.715499 3_1:-5824216 None:intergenic
CGGGTTCAAAGGTTCAACCG+AGG 0.742669 3_1:+5820726 Msa0345980:CDS
CTATGAAGCAGCAAGCACTG+CGG 0.760073 3_1:+5822703 Msa0345980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATTGAAATAAGATAA+AGG + chr3_1:5821587-5821606 Msa0345980:intron 10.0%
!! TTTGAATATTAATGAAGATT+TGG + chr3_1:5821327-5821346 Msa0345980:CDS 15.0%
!! TTGAATATTAATGAAGATTT+GGG + chr3_1:5821328-5821347 Msa0345980:CDS 15.0%
!! AATTCAATGTAAATTGTAAA+TGG - chr3_1:5823154-5823173 None:intergenic 15.0%
!! CTAGTAAAAAATATATTGAA+AGG - chr3_1:5823389-5823408 None:intergenic 15.0%
!! ATTTATTAATCAGTTTACTT+TGG - chr3_1:5824680-5824699 None:intergenic 15.0%
!!! GTTGTTTTTTTTCTTTTTTT+TGG + chr3_1:5824769-5824788 Msa0345980:intron 15.0%
!! ATAAAGTAGTGTTAATAATA+CGG + chr3_1:5824841-5824860 Msa0345980:intron 15.0%
!!! TTTCTTCTAAATATTTCTAA+AGG - chr3_1:5824966-5824985 None:intergenic 15.0%
!!! TTTTTATTTATAAGTTGACA+TGG - chr3_1:5825129-5825148 None:intergenic 15.0%
!!! CAAATTTAAAATGTATAGAA+TGG - chr3_1:5825160-5825179 None:intergenic 15.0%
!!! TTTTAAATGCATATAAAGTA+TGG - chr3_1:5825196-5825215 None:intergenic 15.0%
!!! AATGAGAATTTTGAGTTTTT+CGG + chr3_1:5820245-5820264 Msa0345980:CDS 20.0%
!! AATCCATATATATTCCTATT+CGG - chr3_1:5820779-5820798 None:intergenic 20.0%
!! TAGGAATATATATGGATTTA+TGG + chr3_1:5820781-5820800 Msa0345980:CDS 20.0%
!! AAATCAAGTTTCCTATAATA+CGG - chr3_1:5821097-5821116 None:intergenic 20.0%
!! TGAATATTAATGAAGATTTG+GGG + chr3_1:5821329-5821348 Msa0345980:CDS 20.0%
!! ATTTGTCAACCAAATTTAAA+CGG + chr3_1:5821613-5821632 Msa0345980:intron 20.0%
!! TGATTTCATTATCATTATCA+TGG - chr3_1:5822355-5822374 None:intergenic 20.0%
!! ATTACTATGTTAAAATCTTG+AGG - chr3_1:5824113-5824132 None:intergenic 20.0%
!!! TATTTTGGTCAATTTACATT+TGG + chr3_1:5824484-5824503 Msa0345980:CDS 20.0%
!!! TTTTTTTCTTTTTTTTGGTC+AGG + chr3_1:5824774-5824793 Msa0345980:intron 20.0%
!! TGTATAATATAGACCTTATA+AGG - chr3_1:5824809-5824828 None:intergenic 20.0%
!!! ATTTCAATTTTCTATCTTCA+AGG - chr3_1:5824885-5824904 None:intergenic 20.0%
!!! TAGAATAGGTTTTACTAAAA+AGG - chr3_1:5824989-5825008 None:intergenic 20.0%
!!! CTCAACTTTAAGATAATATT+TGG + chr3_1:5825065-5825084 Msa0345980:intron 20.0%
!!! AACTTTAAGATAATATTTGG+TGG + chr3_1:5825068-5825087 Msa0345980:intron 20.0%
!!! ATTTAAAATGTATAGAATGG+TGG - chr3_1:5825157-5825176 None:intergenic 20.0%
!! ATTTACAACATAACAAACTA+TGG - chr3_1:5825682-5825701 None:intergenic 20.0%
!! TGATTACATTGCATAATATA+AGG + chr3_1:5825733-5825752 Msa0345980:three_prime_UTR 20.0%
!!! AAATTTTGTGACAAACAAAA+GGG - chr3_1:5825781-5825800 None:intergenic 20.0%
!!! TAAATTTTGTGACAAACAAA+AGG - chr3_1:5825782-5825801 None:intergenic 20.0%
! GTAGGAATATATTGATCATT+TGG - chr3_1:5819915-5819934 None:intergenic 25.0%
! GAAAAACTCAAAATTCTCAT+TGG - chr3_1:5820246-5820265 None:intergenic 25.0%
! GATAACAAAACAATATCACA+AGG - chr3_1:5820617-5820636 None:intergenic 25.0%
! AAACCGAATAGGAATATATA+TGG + chr3_1:5820773-5820792 Msa0345980:CDS 25.0%
! ATAGAAATGTACAAAGCAAT+AGG - chr3_1:5821217-5821236 None:intergenic 25.0%
! TATTGCTTTGTACATTTCTA+TGG + chr3_1:5821216-5821235 Msa0345980:CDS 25.0%
! TACACTTACTGAAAATAAGA+TGG + chr3_1:5821384-5821403 Msa0345980:CDS 25.0%
!!! CTGTTTTAACCGTTTAAATT+TGG - chr3_1:5821625-5821644 None:intergenic 25.0%
! AATAGGTGGTTAATTACATT+TGG + chr3_1:5821649-5821668 Msa0345980:intron 25.0%
! AATTGCGATTATAGATAGAA+AGG - chr3_1:5822235-5822254 None:intergenic 25.0%
!! ATTGTAGCATTTGCATTTTT+AGG + chr3_1:5822252-5822271 Msa0345980:intron 25.0%
!! TTGTAGCATTTGCATTTTTA+GGG + chr3_1:5822253-5822272 Msa0345980:intron 25.0%
! TAATGAAATCACCTTTAATG+TGG + chr3_1:5822364-5822383 Msa0345980:intron 25.0%
! GAGAAAGATTCATTAAAATG+TGG - chr3_1:5822406-5822425 None:intergenic 25.0%
! TTTGTCTATTACACTAAACA+TGG - chr3_1:5822555-5822574 None:intergenic 25.0%
! TTGAATCATTGATACATCAT+TGG - chr3_1:5823484-5823503 None:intergenic 25.0%
! TGATGTATCAATGATTCAAA+TGG + chr3_1:5823485-5823504 Msa0345980:CDS 25.0%
! TGATATGATAAACCATTTGT+TGG - chr3_1:5823713-5823732 None:intergenic 25.0%
!!! ATCAGGGTTTTATAGATAAT+TGG + chr3_1:5823783-5823802 Msa0345980:intron 25.0%
! AGAACATACCTAAAAAACAA+AGG - chr3_1:5824152-5824171 None:intergenic 25.0%
! AGAATTCCAACAATAATAGT+TGG - chr3_1:5824251-5824270 None:intergenic 25.0%
! TATAAAGTTGAGGATACTTT+AGG - chr3_1:5824301-5824320 None:intergenic 25.0%
!!! GAAACTGTTTTTGTTAACAA+TGG + chr3_1:5824352-5824371 Msa0345980:CDS 25.0%
! GTAGAAAAATCACTTAGAAT+AGG - chr3_1:5825003-5825022 None:intergenic 25.0%
! TATTATCTTAAAGTTGAGAC+TGG - chr3_1:5825063-5825082 None:intergenic 25.0%
!! ATATATTTTACAACCAAACG+TGG - chr3_1:5825367-5825386 None:intergenic 25.0%
! CTAGATATTTGAATATCACT+AGG - chr3_1:5825406-5825425 None:intergenic 25.0%
! ATAGATTACTTCTCTTATCT+TGG - chr3_1:5825508-5825527 None:intergenic 25.0%
! TGTAAAGTTGCATATACTTT+AGG + chr3_1:5825548-5825567 Msa0345980:three_prime_UTR 25.0%
! AACAAAAAAACTCTATCCTT+CGG - chr3_1:5825620-5825639 None:intergenic 25.0%
!! ACCATTGATTATAGAATGAA+AGG + chr3_1:5825703-5825722 Msa0345980:three_prime_UTR 25.0%
! TCCTTTCATTCTATAATCAA+TGG - chr3_1:5825707-5825726 None:intergenic 25.0%
!! TATTGATCATTTGGTGTTCT+TGG - chr3_1:5819906-5819925 None:intergenic 30.0%
!!! GAAAATGTTGACTTCGATTT+TGG - chr3_1:5819960-5819979 None:intergenic 30.0%
! AAATCGAAGTCAACATTTTC+CGG + chr3_1:5819960-5819979 Msa0345980:CDS 30.0%
!!! AAATTCTCATTGGTTTTCTC+AGG - chr3_1:5820236-5820255 None:intergenic 30.0%
AACTGTTCAAACAAATTCCT+TGG - chr3_1:5820314-5820333 None:intergenic 30.0%
CAGATAAAGTTGAGAATAAC+AGG + chr3_1:5820492-5820511 Msa0345980:CDS 30.0%
!! GCAACAATTTTGATGAATGA+CGG + chr3_1:5820518-5820537 Msa0345980:CDS 30.0%
GTAGTTTCATTGAGAAGAAA+TGG + chr3_1:5820540-5820559 Msa0345980:CDS 30.0%
TTTCATTGAGAAGAAATGGA+AGG + chr3_1:5820544-5820563 Msa0345980:CDS 30.0%
GTGCAAACTATTAATCTTGA+TGG + chr3_1:5820665-5820684 Msa0345980:CDS 30.0%
TTAATCAAACCAGTATACCT+CGG - chr3_1:5820746-5820765 None:intergenic 30.0%
ATATGGATTTATGGCGAATA+TGG + chr3_1:5820790-5820809 Msa0345980:CDS 30.0%
TGAGCTTAAGAATACTAGTT+GGG + chr3_1:5820868-5820887 Msa0345980:CDS 30.0%
AAAGCTATGCTTAACAATTC+AGG + chr3_1:5820926-5820945 Msa0345980:CDS 30.0%
!! GAAACTTGATTTTTCAAAGC+CGG + chr3_1:5821105-5821124 Msa0345980:CDS 30.0%
TACTTATAGTCTTCAACTTC+CGG - chr3_1:5821127-5821146 None:intergenic 30.0%
GTTGAAGACTATAAGTACTA+TGG + chr3_1:5821130-5821149 Msa0345980:CDS 30.0%
AAGACTATAAGTACTATGGA+TGG + chr3_1:5821134-5821153 Msa0345980:CDS 30.0%
AGACTATAAGTACTATGGAT+GGG + chr3_1:5821135-5821154 Msa0345980:CDS 30.0%
GGTAAACTATAACTGACATA+AGG - chr3_1:5821183-5821202 None:intergenic 30.0%
TATGTCAGTTATAGTTTACC+AGG + chr3_1:5821183-5821202 Msa0345980:CDS 30.0%
TATGTGTTCTCAGATAAAAC+TGG + chr3_1:5821361-5821380 Msa0345980:CDS 30.0%
AACAATACCAGATGCATTAA+AGG - chr3_1:5821568-5821587 None:intergenic 30.0%
ACGGTTAAAACAGTTCAAAT+AGG + chr3_1:5821632-5821651 Msa0345980:intron 30.0%
GTTAAAACAGTTCAAATAGG+TGG + chr3_1:5821635-5821654 Msa0345980:intron 30.0%
CGGTTAATGAGTATATAAGA+TGG - chr3_1:5821735-5821754 None:intergenic 30.0%
AGGTAATTACGTTCAGTATA+CGG - chr3_1:5821755-5821774 None:intergenic 30.0%
! TATTTTCTACTCTCAGTTGA+TGG + chr3_1:5821891-5821910 Msa0345980:intron 30.0%
AAGAAATGGAGTTGAAAATG+TGG + chr3_1:5821971-5821990 Msa0345980:CDS 30.0%
TTCGATAAGCATAAAACCAT+AGG - chr3_1:5822147-5822166 None:intergenic 30.0%
CATGAATATCAATGACTATG+TGG - chr3_1:5822181-5822200 None:intergenic 30.0%
CACATAGTCATTGATATTCA+TGG + chr3_1:5822179-5822198 Msa0345980:CDS 30.0%
TTTCTCATTATGAACATTGC+AGG + chr3_1:5822420-5822439 Msa0345980:intron 30.0%
CAGTGATAGAAAAAGAATGT+CGG + chr3_1:5822472-5822491 Msa0345980:CDS 30.0%
! AAAAGAATGTCGGTTATACT+AGG + chr3_1:5822482-5822501 Msa0345980:CDS 30.0%
TCAGTAAAACTCTTTGTCAA+AGG + chr3_1:5822518-5822537 Msa0345980:CDS 30.0%
AATAGACAAATCACACAACA+TGG + chr3_1:5822565-5822584 Msa0345980:CDS 30.0%
AACAAGTGTTCTTAAACCTA+GGG - chr3_1:5822633-5822652 None:intergenic 30.0%
TAACAAGTGTTCTTAAACCT+AGG - chr3_1:5822634-5822653 None:intergenic 30.0%
!! GGTTTAAGAACACTTGTTAT+TGG + chr3_1:5822635-5822654 Msa0345980:CDS 30.0%
GAAAGCAATGTTTCCATATT+AGG + chr3_1:5822770-5822789 Msa0345980:CDS 30.0%
ATCGAAGATAAACTTCAACA+AGG + chr3_1:5822803-5822822 Msa0345980:CDS 30.0%
!! ATTAAAGTTTGGGTTTTGAC+TGG + chr3_1:5822863-5822882 Msa0345980:CDS 30.0%
CAAGAAACTGCTATATCTAT+TGG + chr3_1:5822893-5822912 Msa0345980:CDS 30.0%
!! CAGATAGCTTTGATTATTGA+TGG + chr3_1:5823043-5823062 Msa0345980:CDS 30.0%
!! ATAGCTTTGATTATTGATGG+TGG + chr3_1:5823046-5823065 Msa0345980:CDS 30.0%
!!! GATGTTTTATTTGCTGATCA+TGG + chr3_1:5823181-5823200 Msa0345980:intron 30.0%
! ATTTTGCAATGGGACAATTT+AGG + chr3_1:5823565-5823584 Msa0345980:CDS 30.0%
! GAGTACAATATCTGAAACTA+GGG - chr3_1:5824037-5824056 None:intergenic 30.0%
! TGAGTACAATATCTGAAACT+AGG - chr3_1:5824038-5824057 None:intergenic 30.0%
CAACAACTGCAATAAATGAA+TGG + chr3_1:5824189-5824208 Msa0345980:CDS 30.0%
GTAGATTATTGAGTACAATG+TGG - chr3_1:5824219-5824238 None:intergenic 30.0%
! CAAAAACAGTTTCTTGTTGT+AGG - chr3_1:5824345-5824364 None:intergenic 30.0%
! TAACAATGGTTGATACTTTG+TGG + chr3_1:5824366-5824385 Msa0345980:CDS 30.0%
ACTATTGATATAGCAAGCAT+AGG + chr3_1:5824437-5824456 Msa0345980:CDS 30.0%
TAACGATTGTTCACATAGTT+TGG + chr3_1:5824711-5824730 Msa0345980:intron 30.0%
CATATAAAGTATGGTAGCAT+AGG - chr3_1:5825187-5825206 None:intergenic 30.0%
AGTACTTGAAACATGAAAGA+AGG - chr3_1:5825296-5825315 None:intergenic 30.0%
! TTCTTTCATGTTTCAAGTAC+TGG + chr3_1:5825295-5825314 Msa0345980:CDS 30.0%
TATCAAAGAGTTGCTGAAAA+TGG + chr3_1:5825448-5825467 Msa0345980:CDS 30.0%
TTTCATTGTTAACTATCCGA+AGG + chr3_1:5825601-5825620 Msa0345980:three_prime_UTR 30.0%
CTTGGAGATTGTAACAAAAG+TGG - chr3_1:5819888-5819907 None:intergenic 35.0%
TCAGGAAAAACTGGTATTGT+AGG - chr3_1:5819933-5819952 None:intergenic 35.0%
TTCCATGTCCATTCATTCAA+TGG + chr3_1:5820043-5820062 Msa0345980:CDS 35.0%
TCCATGTCCATTCATTCAAT+GGG + chr3_1:5820044-5820063 Msa0345980:CDS 35.0%
CAAGAGGAACAATTCTGTAA+GGG + chr3_1:5820073-5820092 Msa0345980:CDS 35.0%
ATGAGTAGTTTAAACCAGTC+AGG + chr3_1:5820098-5820117 Msa0345980:CDS 35.0%
TCAAAAAATCCTGTGAGGTA+TGG + chr3_1:5820122-5820141 Msa0345980:CDS 35.0%
TCTAAGTTCTCTTTGTGACA+TGG - chr3_1:5820180-5820199 None:intergenic 35.0%
TAGAGATGAAGATGCAAGAT+TGG + chr3_1:5820196-5820215 Msa0345980:CDS 35.0%
AATTCCTTGGAATGAAAGTG+AGG - chr3_1:5820301-5820320 None:intergenic 35.0%
ATATGTTTCGATTCTACCGT+TGG + chr3_1:5820409-5820428 Msa0345980:CDS 35.0%
ACAAACAGAACAAAAGCCAA+CGG - chr3_1:5820428-5820447 None:intergenic 35.0%
!! GCTTTTGTTCTGTTTGTTAC+TGG + chr3_1:5820431-5820450 Msa0345980:CDS 35.0%
!! TGAAAGATGCTTTTGAGGAT+TGG + chr3_1:5820456-5820475 Msa0345980:CDS 35.0%
AAATGGAAGGATATTCGAGT+TGG + chr3_1:5820557-5820576 Msa0345980:CDS 35.0%
TTATCAACTAGTGATCCAAC+TGG + chr3_1:5820632-5820651 Msa0345980:CDS 35.0%
GTGAGTCTAATTTGAAGACT+AGG + chr3_1:5820687-5820706 Msa0345980:CDS 35.0%
TTAAGTGTGAGAAACCGAAT+AGG + chr3_1:5820762-5820781 Msa0345980:CDS 35.0%
GATGGTAAGAAGTTATCACT+TGG + chr3_1:5820818-5820837 Msa0345980:CDS 35.0%
GTGAGCTTAAGAATACTAGT+TGG + chr3_1:5820867-5820886 Msa0345980:CDS 35.0%
AATCACATCTGTTTGTTCTG+CGG + chr3_1:5821033-5821052 Msa0345980:CDS 35.0%
ACAGATTCAACTCATCCTTA+TGG - chr3_1:5821072-5821091 None:intergenic 35.0%
TGAATCTGTTGCCGTATTAT+AGG + chr3_1:5821083-5821102 Msa0345980:CDS 35.0%
GACTATAAGTACTATGGATG+GGG + chr3_1:5821136-5821155 Msa0345980:CDS 35.0%
ATCGTCTTCGATCATGAAAT+AGG - chr3_1:5821263-5821282 None:intergenic 35.0%
TCTGCACTGAAACTTTGTAT+TGG - chr3_1:5821305-5821324 None:intergenic 35.0%
AACATTGCCTTTAATGCATC+TGG + chr3_1:5821558-5821577 Msa0345980:intron 35.0%
AGGTGGTTAATTACATTTGG+TGG + chr3_1:5821652-5821671 Msa0345980:intron 35.0%
TTCATGCAGCTTAAATAGGT+AGG - chr3_1:5821775-5821794 None:intergenic 35.0%
! TTTTGCGACAGTAATCTAAG+TGG - chr3_1:5821798-5821817 None:intergenic 35.0%
GATCTTAAAGCCAATGATGA+AGG + chr3_1:5821917-5821936 Msa0345980:CDS 35.0%
CTAACTTTCACCTTCATCAT+TGG - chr3_1:5821930-5821949 None:intergenic 35.0%
! CTTTTGCAATTGGCAAGAAA+TGG + chr3_1:5821957-5821976 Msa0345980:CDS 35.0%
AATGGAGTTGAAAATGTGGA+AGG + chr3_1:5821975-5821994 Msa0345980:CDS 35.0%
AATAGGCACAATAGTATTGC+AGG - chr3_1:5822036-5822055 None:intergenic 35.0%
TAATCTAACAGCTTGACATC+AGG - chr3_1:5822077-5822096 None:intergenic 35.0%
AATATCAATGACTATGTGGC+CGG - chr3_1:5822177-5822196 None:intergenic 35.0%
CATTGTTTGCACCACATTAA+AGG - chr3_1:5822378-5822397 None:intergenic 35.0%
! AGAGTTTTACTGAACTGTCA+GGG - chr3_1:5822511-5822530 None:intergenic 35.0%
! AAGAGTTTTACTGAACTGTC+AGG - chr3_1:5822512-5822531 None:intergenic 35.0%
ACACAACATGGACGTAATAA+AGG + chr3_1:5822577-5822596 Msa0345980:CDS 35.0%
TGGAAACATTGCTTTCAACA+TGG - chr3_1:5822766-5822785 None:intergenic 35.0%
GTATCCTTGTGTTACATTAC+AGG + chr3_1:5823456-5823475 Msa0345980:intron 35.0%
ATGATTCAAATGGCTGATGT+TGG + chr3_1:5823495-5823514 Msa0345980:CDS 35.0%
! AATGGCATCAGATTTTGCAA+TGG + chr3_1:5823554-5823573 Msa0345980:CDS 35.0%
! ATGGCATCAGATTTTGCAAT+GGG + chr3_1:5823555-5823574 Msa0345980:CDS 35.0%
GTTCCTCTCTTATTGATACA+TGG + chr3_1:5823594-5823613 Msa0345980:CDS 35.0%
TGACCATGTATCAATAAGAG+AGG - chr3_1:5823600-5823619 None:intergenic 35.0%
TCTTATTGATACATGGTCAC+TGG + chr3_1:5823601-5823620 Msa0345980:CDS 35.0%
ATGGTCACTGGAATTATCAA+AGG + chr3_1:5823613-5823632 Msa0345980:CDS 35.0%
! TCCTTGTTCTTGTCCTATTT+TGG + chr3_1:5823676-5823695 Msa0345980:CDS 35.0%
ACCAAAATAGGACAAGAACA+AGG - chr3_1:5823680-5823699 None:intergenic 35.0%
GGATTGTGACTTACCAAAAT+AGG - chr3_1:5823692-5823711 None:intergenic 35.0%
GTAAGTCACAATCCAACAAA+TGG + chr3_1:5823698-5823717 Msa0345980:intron 35.0%
TTGATGTTTGTGTCAGTATC+AGG + chr3_1:5823766-5823785 Msa0345980:intron 35.0%
TGATGTTTGTGTCAGTATCA+GGG + chr3_1:5823767-5823786 Msa0345980:intron 35.0%
! AACTAGGGTTTAGTCTCTTT+TGG - chr3_1:5824022-5824041 None:intergenic 35.0%
!!! GTTGTGTGCCTTTGTTTTTT+AGG + chr3_1:5824141-5824160 Msa0345980:intron 35.0%
TATTGCAGTTGTTGAAGTGA+AGG - chr3_1:5824183-5824202 None:intergenic 35.0%
GCACTACCAACTATTATTGT+TGG + chr3_1:5824242-5824261 Msa0345980:CDS 35.0%
TATCCTCAACTTTATAGTGC+TGG + chr3_1:5824305-5824324 Msa0345980:CDS 35.0%
! CTTTTCCAATATGCAAAGAG+TGG - chr3_1:5824416-5824435 None:intergenic 35.0%
GGTCAATTTACATTTGGCTA+TGG + chr3_1:5824490-5824509 Msa0345980:CDS 35.0%
TGGATGTTGTTAGATGGTAT+TGG + chr3_1:5824510-5824529 Msa0345980:CDS 35.0%
GGATGTTGTTAGATGGTATT+GGG + chr3_1:5824511-5824530 Msa0345980:CDS 35.0%
TTCGAAGATATAGACGCAAT+TGG - chr3_1:5824737-5824756 None:intergenic 35.0%
CAGGTAGAATTCACCTTATA+AGG + chr3_1:5824793-5824812 Msa0345980:intron 35.0%
! TAAAGTTGAGACTGGTTACA+TGG - chr3_1:5825055-5825074 None:intergenic 35.0%
GAAGCAATGTATGATTGCAA+AGG - chr3_1:5825219-5825238 None:intergenic 35.0%
TTTCCTAACTTTGACATTGC+AGG + chr3_1:5825269-5825288 Msa0345980:intron 35.0%
TTCCTAACTTTGACATTGCA+GGG + chr3_1:5825270-5825289 Msa0345980:intron 35.0%
!! CTTGGTTGATGATATGTGAT+AGG - chr3_1:5825490-5825509 None:intergenic 35.0%
! CAGAGTATTTCTCTATGTTG+CGG + chr3_1:5825577-5825596 Msa0345980:three_prime_UTR 35.0%
! TTTGGTAGCTCAGGAAAAAC+TGG - chr3_1:5819942-5819961 None:intergenic 40.0%
!! ACATTTTCCGGTGTTGAGTT+CGG + chr3_1:5819972-5819991 Msa0345980:CDS 40.0%
ACCCATTGAATGAATGGACA+TGG - chr3_1:5820048-5820067 None:intergenic 40.0%
GCTAGAACCCATTGAATGAA+TGG - chr3_1:5820054-5820073 None:intergenic 40.0%
! ATTCAATGGGTTCTAGCAAG+AGG + chr3_1:5820057-5820076 Msa0345980:CDS 40.0%
GCAAGAGGAACAATTCTGTA+AGG + chr3_1:5820072-5820091 Msa0345980:CDS 40.0%
!!! CAGGATTTTTTGATCCTGAC+TGG - chr3_1:5820115-5820134 None:intergenic 40.0%
CAGGATCAAAAAATCCTGTG+AGG + chr3_1:5820117-5820136 Msa0345980:CDS 40.0%
CAATCCTCACTTTCATTCCA+AGG + chr3_1:5820294-5820313 Msa0345980:CDS 40.0%
ATGGCGAATATGGAAATCGA+TGG + chr3_1:5820800-5820819 Msa0345980:CDS 40.0%
TCAACCAACATTGTGCTTAG+AGG + chr3_1:5820842-5820861 Msa0345980:CDS 40.0%
ACATCCTCTAAGCACAATGT+TGG - chr3_1:5820849-5820868 None:intergenic 40.0%
AAGAATACTAGTTGGGCACT+TGG + chr3_1:5820875-5820894 Msa0345980:CDS 40.0%
!! TAAGCATAGCTTTAGTCTCG+CGG - chr3_1:5820919-5820938 None:intergenic 40.0%
TAAGTACTATGGATGGGGAT+TGG + chr3_1:5821141-5821160 Msa0345980:CDS 40.0%
AAGCAATAGGAATCATGACC+TGG - chr3_1:5821204-5821223 None:intergenic 40.0%
AGACGATCGATTGTATGATG+AGG + chr3_1:5821276-5821295 Msa0345980:CDS 40.0%
TTTCAATGTGCAAGCATACG+AGG + chr3_1:5821409-5821428 Msa0345980:CDS 40.0%
GATTACAGTGCCACAAAAAC+CGG + chr3_1:5821436-5821455 Msa0345980:CDS 40.0%
GTGGTTCATGCAGCTTAAAT+AGG - chr3_1:5821779-5821798 None:intergenic 40.0%
! TAGTCCAGAGCTTTTGCAAT+TGG + chr3_1:5821947-5821966 Msa0345980:CDS 40.0%
TAACAGCTTGACATCAGGAT+CGG - chr3_1:5822072-5822091 None:intergenic 40.0%
GTCAAGCTGTTAGATTACCA+AGG + chr3_1:5822080-5822099 Msa0345980:CDS 40.0%
TATGCCAATGCTTGTTCATC+AGG - chr3_1:5822113-5822132 None:intergenic 40.0%
ATGCTTATCGAACGAACTTC+CGG + chr3_1:5822155-5822174 Msa0345980:CDS 40.0%
ACATTGCAGGTTCAATGTGT+TGG + chr3_1:5822433-5822452 Msa0345980:intron 40.0%
CATTGCAGGTTCAATGTGTT+GGG + chr3_1:5822434-5822453 Msa0345980:intron 40.0%
AGAGTGAAGATGAGTTTCTG+TGG - chr3_1:5822603-5822622 None:intergenic 40.0%
GCACTTCAGAGTTTGAAGAA+TGG + chr3_1:5822672-5822691 Msa0345980:CDS 40.0%
GATAGCAGATGCTCCTAATA+TGG - chr3_1:5822786-5822805 None:intergenic 40.0%
TAAACTTCAACAAGGTGTGC+CGG + chr3_1:5822811-5822830 Msa0345980:CDS 40.0%
AGCAGCAGGGATTAAAGTTT+GGG + chr3_1:5822853-5822872 Msa0345980:CDS 40.0%
GTCTCAAAGATGCTCTTGAA+AGG + chr3_1:5822993-5823012 Msa0345980:CDS 40.0%
CAAAGCTATCTGTGTTGCAA+CGG - chr3_1:5823035-5823054 None:intergenic 40.0%
TTGTTTCCCTTGTGAAGAAG+AGG + chr3_1:5823293-5823312 Msa0345980:CDS 40.0%
AGATGTCCTCTTCTTCACAA+GGG - chr3_1:5823302-5823321 None:intergenic 40.0%
!! GATGTTGGAGTTGGTATAAG+TGG + chr3_1:5823510-5823529 Msa0345980:CDS 40.0%
! AGTTGGTATAAGTGGACAAG+AGG + chr3_1:5823518-5823537 Msa0345980:CDS 40.0%
GTTGGTATAAGTGGACAAGA+GGG + chr3_1:5823519-5823538 Msa0345980:CDS 40.0%
CACTGGAATTATCAAAGGCT+TGG + chr3_1:5823618-5823637 Msa0345980:CDS 40.0%
TGTCCAGCACTATAAAGTTG+AGG - chr3_1:5824311-5824330 None:intergenic 40.0%
TGATACTTTGTGGCAAAGCA+TGG + chr3_1:5824376-5824395 Msa0345980:CDS 40.0%
! GGCAAAGCATGGTTGTATTT+TGG + chr3_1:5824387-5824406 Msa0345980:CDS 40.0%
TTCCAATATGCAAAGAGTGG+AGG - chr3_1:5824413-5824432 None:intergenic 40.0%
!! GACTCTTGCTGTGGTTATTT+TGG + chr3_1:5824469-5824488 Msa0345980:CDS 40.0%
TGGCTATGGATGTTGTTAGA+TGG + chr3_1:5824504-5824523 Msa0345980:CDS 40.0%
GTGAATACATACCAGTAACC+AGG - chr3_1:5824614-5824633 None:intergenic 40.0%
!! TTTCAAGTACTGGACTGTTC+TGG + chr3_1:5825305-5825324 Msa0345980:CDS 40.0%
!! TTCAAGTACTGGACTGTTCT+GGG + chr3_1:5825306-5825325 Msa0345980:CDS 40.0%
!! GACTTCGATTTTGGTAGCTC+AGG - chr3_1:5819951-5819970 None:intergenic 45.0%
AACTTGACCGAACTCAACAC+CGG - chr3_1:5819982-5820001 None:intergenic 45.0%
! CCTTTTGAACCATACCTCAC+AGG - chr3_1:5820134-5820153 None:intergenic 45.0%
CCTGTGAGGTATGGTTCAAA+AGG + chr3_1:5820131-5820150 Msa0345980:CDS 45.0%
GTGAGGTATGGTTCAAAAGG+TGG + chr3_1:5820134-5820153 Msa0345980:CDS 45.0%
AGGTATGGTTCAAAAGGTGG+TGG + chr3_1:5820137-5820156 Msa0345980:CDS 45.0%
! AAAGGTGGTGGTGATTCTGA+AGG + chr3_1:5820149-5820168 Msa0345980:CDS 45.0%
! AAGGTGGTGGTGATTCTGAA+GGG + chr3_1:5820150-5820169 Msa0345980:CDS 45.0%
CAATCAGCTTCCTCAACTTG+CGG + chr3_1:5820376-5820395 Msa0345980:CDS 45.0%
CTTCCTCAACTTGCGGTATT+TGG + chr3_1:5820383-5820402 Msa0345980:CDS 45.0%
CTTCCAAATACCGCAAGTTG+AGG - chr3_1:5820389-5820408 None:intergenic 45.0%
! TGGCGTGAAAGATGCTTTTG+AGG + chr3_1:5820451-5820470 Msa0345980:CDS 45.0%
TGCACATATGCAACACCAGT+TGG - chr3_1:5820650-5820669 None:intergenic 45.0%
GAAGACTAGGTATGCGAAAC+AGG + chr3_1:5820700-5820719 Msa0345980:CDS 45.0%
TAGGTATGCGAAACAGGAGA+CGG + chr3_1:5820706-5820725 Msa0345980:CDS 45.0%
AAGGTTCAACCGAGGTATAC+TGG + chr3_1:5820734-5820753 Msa0345980:CDS 45.0%
GAGCTCCATCGAAAAGAAGT+AGG + chr3_1:5820948-5820967 Msa0345980:CDS 45.0%
TCCATCGAAAAGAAGTAGGC+TGG + chr3_1:5820952-5820971 Msa0345980:CDS 45.0%
! TCCAGCCTACTTCTTTTCGA+TGG - chr3_1:5820956-5820975 None:intergenic 45.0%
CATCTGTTTGTTCTGCGGTT+TGG + chr3_1:5821038-5821057 Msa0345980:CDS 45.0%
! TCTATGGAGCTTGTTCGTGT+TGG + chr3_1:5821232-5821251 Msa0345980:CDS 45.0%
CTTCGATCATGAAATAGGCC+TGG - chr3_1:5821258-5821277 None:intergenic 45.0%
!!! ATTCTCCATGCCGGTTTTTG+TGG - chr3_1:5821449-5821468 None:intergenic 45.0%
ACCTAGTTCATTCTCCATGC+CGG - chr3_1:5821458-5821477 None:intergenic 45.0%
CTAGGTGAATACTCAGTGCA+AGG + chr3_1:5821472-5821491 Msa0345980:CDS 45.0%
CTTGCCAATTGCAAAAGCTC+TGG - chr3_1:5821954-5821973 None:intergenic 45.0%
AACAGCTTGACATCAGGATC+GGG - chr3_1:5822071-5822090 None:intergenic 45.0%
ATCGCCTGATGAACAAGCAT+TGG + chr3_1:5822106-5822125 Msa0345980:CDS 45.0%
CATAAAACCATAGGCAGCAG+CGG - chr3_1:5822138-5822157 None:intergenic 45.0%
AATGTGTAACGCGAGTGTCT+AGG + chr3_1:5822314-5822333 Msa0345980:intron 45.0%
ATGTGTAACGCGAGTGTCTA+GGG + chr3_1:5822315-5822334 Msa0345980:intron 45.0%
CTTCACTCTTACTCTTCCCT+AGG + chr3_1:5822614-5822633 Msa0345980:CDS 45.0%
GAGCAGCAGGGATTAAAGTT+TGG + chr3_1:5822852-5822871 Msa0345980:CDS 45.0%
CACTGTCGAGTATGTGTACA+AGG - chr3_1:5823075-5823094 None:intergenic 45.0%
CGACAGTGAACATGAAGAAG+AGG + chr3_1:5823087-5823106 Msa0345980:CDS 45.0%
! TGTCGTTCTTTGTTGTCGAG+TGG + chr3_1:5823249-5823268 Msa0345980:CDS 45.0%
! ACAATACCAGCCTTTTGCAG+TGG - chr3_1:5823277-5823296 None:intergenic 45.0%
CAGATGTCCTCTTCTTCACA+AGG - chr3_1:5823303-5823322 None:intergenic 45.0%
TCTGACATGACACTAGCCAT+CGG + chr3_1:5823319-5823338 Msa0345980:CDS 45.0%
GGCACCTGTAATGTAACACA+AGG - chr3_1:5823463-5823482 None:intergenic 45.0%
CAAATGGCTGATGTTGGAGT+TGG + chr3_1:5823501-5823520 Msa0345980:CDS 45.0%
GTATAAGTGGACAAGAGGGT+AGG + chr3_1:5823523-5823542 Msa0345980:CDS 45.0%
! ATGCTTCTAGAAGCCTTCTG+TGG - chr3_1:5823888-5823907 None:intergenic 45.0%
GGGTATCTATAGCCTTTCGT+GGG - chr3_1:5823974-5823993 None:intergenic 45.0%
TGCCTTGAGAATGACCTCAA+GGG - chr3_1:5823996-5824015 None:intergenic 45.0%
ATGCCTTGAGAATGACCTCA+AGG - chr3_1:5823997-5824016 None:intergenic 45.0%
TAGCAAGCATAGGAGACCTT+TGG + chr3_1:5824447-5824466 Msa0345980:CDS 45.0%
TAACCACAGCAAGAGTCCAA+AGG - chr3_1:5824466-5824485 None:intergenic 45.0%
GGTGACTCATGCAGTCATTT+GGG + chr3_1:5824532-5824551 Msa0345980:CDS 45.0%
GTGACTCATGCAGTCATTTG+GGG + chr3_1:5824533-5824552 Msa0345980:CDS 45.0%
GTAACCAGGAAGTTGAGGTA+TGG - chr3_1:5824600-5824619 None:intergenic 45.0%
TACCTCAACTTCCTGGTTAC+TGG + chr3_1:5824600-5824619 Msa0345980:CDS 45.0%
TACCAGTAACCAGGAAGTTG+AGG - chr3_1:5824605-5824624 None:intergenic 45.0%
AGGTATGCGAAACAGGAGAC+GGG + chr3_1:5820707-5820726 Msa0345980:CDS 50.0%
! GAAACAGGAGACGGGTTCAA+AGG + chr3_1:5820715-5820734 Msa0345980:CDS 50.0%
!! CTTGGTGTCGCAGTCTATTG+TGG + chr3_1:5820893-5820912 Msa0345980:CDS 50.0%
AAAGAAGTAGGCTGGAGACG+CGG + chr3_1:5820960-5820979 Msa0345980:CDS 50.0%
! GGTTTGGTTGAAGCGCCATA+AGG + chr3_1:5821054-5821073 Msa0345980:CDS 50.0%
ACCGGCATGGAGAATGAACT+AGG + chr3_1:5821454-5821473 Msa0345980:CDS 50.0%
TCGGGCGTGTCAACAACAAT+AGG - chr3_1:5822053-5822072 None:intergenic 50.0%
GTTCATCAGGCGATTCACCT+TGG - chr3_1:5822100-5822119 None:intergenic 50.0%
! CTATGAAGCAGCAAGCACTG+CGG + chr3_1:5822703-5822722 Msa0345980:CDS 50.0%
! CAAGCACTGCGGTATTTGGT+CGG + chr3_1:5822714-5822733 Msa0345980:CDS 50.0%
! AAGCACTGCGGTATTTGGTC+GGG + chr3_1:5822715-5822734 Msa0345980:CDS 50.0%
CTCAGCGACTCAATTGCTTC+CGG - chr3_1:5822833-5822852 None:intergenic 50.0%
ATGACACTAGCCATCGGAGA+TGG + chr3_1:5823325-5823344 Msa0345980:CDS 50.0%
AGAACTCGTACCATCTCCGA+TGG - chr3_1:5823338-5823357 None:intergenic 50.0%
AGAGGGTAGGCAAGCTGTAA+TGG + chr3_1:5823536-5823555 Msa0345980:CDS 50.0%
! CTTCTAGAAGCCTTCTGTGG+TGG - chr3_1:5823885-5823904 None:intergenic 50.0%
! GACTTAGCGCTCAAGTTGCT+TGG + chr3_1:5823925-5823944 Msa0345980:intron 50.0%
! TTAGCGCTCAAGTTGCTTGG+TGG + chr3_1:5823928-5823947 Msa0345980:intron 50.0%
! GTTGCTTGGTGGCTAAGTCA+CGG + chr3_1:5823939-5823958 Msa0345980:intron 50.0%
CGGAAAAACAAGCCCACGAA+AGG + chr3_1:5823959-5823978 Msa0345980:intron 50.0%
! GGGGTATCTATAGCCTTTCG+TGG - chr3_1:5823975-5823994 None:intergenic 50.0%
AGGCTATAGATACCCCCTTG+AGG + chr3_1:5823979-5823998 Msa0345980:intron 50.0%
CCTTGAGAATGACCTCAAGG+GGG - chr3_1:5823994-5824013 None:intergenic 50.0%
GCCTTGAGAATGACCTCAAG+GGG - chr3_1:5823995-5824014 None:intergenic 50.0%
GGCCTCCACTCTTTGCATAT+TGG + chr3_1:5824408-5824427 Msa0345980:CDS 50.0%
AGACCTTTGGACTCTTGCTG+TGG + chr3_1:5824460-5824479 Msa0345980:CDS 50.0%
GGGTGACTCATGCAGTCATT+TGG + chr3_1:5824531-5824550 Msa0345980:CDS 50.0%
GATGCCATACCTCAACTTCC+TGG + chr3_1:5824593-5824612 Msa0345980:CDS 50.0%
GGCCCTGCAATGTCAAAGTT+AGG - chr3_1:5825275-5825294 None:intergenic 50.0%
! CTGTTCTGGGCATTGTTGCT+AGG + chr3_1:5825319-5825338 Msa0345980:CDS 50.0%
AGCAGCATTGCTTCCACGTT+TGG + chr3_1:5825351-5825370 Msa0345980:CDS 50.0%
CGGGTTCAAAGGTTCAACCG+AGG + chr3_1:5820726-5820745 Msa0345980:CDS 55.0%
CAGTGCCACAAAAACCGGCA+TGG + chr3_1:5821441-5821460 Msa0345980:CDS 55.0%
! CGCAGTGCTTGCTGCTTCAT+AGG - chr3_1:5822705-5822724 None:intergenic 55.0%
! GCAGCAAGCACTGCGGTATT+TGG + chr3_1:5822710-5822729 Msa0345980:CDS 55.0%
ATTGAGTCGCTGAGAGCAGC+AGG + chr3_1:5822839-5822858 Msa0345980:CDS 55.0%
TTGAGTCGCTGAGAGCAGCA+GGG + chr3_1:5822840-5822859 Msa0345980:CDS 55.0%
TCGAGTGGCTCCACTGCAAA+AGG + chr3_1:5823264-5823283 Msa0345980:CDS 55.0%
CCCCCTTGAGGTCATTCTCA+AGG + chr3_1:5823991-5824010 Msa0345980:intron 55.0%
! GGAGCTTGTTCGTGTTGGCC+AGG + chr3_1:5821237-5821256 Msa0345980:CDS 60.0%
GCATATGCCGCTGCTGCCTA+TGG + chr3_1:5822128-5822147 Msa0345980:CDS 60.0%
GTGGCTCCACTGCAAAAGGC+TGG + chr3_1:5823268-5823287 Msa0345980:CDS 60.0%
GCTGTTTGGGCCCTTCTGGA+GGG - chr3_1:5823838-5823857 None:intergenic 60.0%
AGAAGGGCCCAAACAGCCCT+GGG + chr3_1:5823841-5823860 Msa0345980:intron 60.0%
! TCTGTGGTGGTGCCCTTTGG+AGG - chr3_1:5823872-5823891 None:intergenic 60.0%
! CCTTCTGTGGTGGTGCCCTT+TGG - chr3_1:5823875-5823894 None:intergenic 60.0%
!! CCAAAGGGCACCACCACAGA+AGG + chr3_1:5823872-5823891 Msa0345980:intron 60.0%
AGAGCACACCGCCCTCCAGA+AGG + chr3_1:5823824-5823843 Msa0345980:intron 65.0%
GAGCACACCGCCCTCCAGAA+GGG + chr3_1:5823825-5823844 Msa0345980:intron 65.0%
! GTTTGGGCCCTTCTGGAGGG+CGG - chr3_1:5823835-5823854 None:intergenic 65.0%
GGCTGTTTGGGCCCTTCTGG+AGG - chr3_1:5823839-5823858 None:intergenic 65.0%
CAGGGCTGTTTGGGCCCTTC+TGG - chr3_1:5823842-5823861 None:intergenic 65.0%
CAGAAGGGCCCAAACAGCCC+TGG + chr3_1:5823840-5823859 Msa0345980:intron 65.0%
GGACGCGCCCAGGGCTGTTT+GGG - chr3_1:5823851-5823870 None:intergenic 70.0%
AGGACGCGCCCAGGGCTGTT+TGG - chr3_1:5823852-5823871 None:intergenic 70.0%
! CCCTTTGGAGGACGCGCCCA+GGG - chr3_1:5823860-5823879 None:intergenic 70.0%
CCCTGGGCGCGTCCTCCAAA+GGG + chr3_1:5823857-5823876 Msa0345980:intron 70.0%
GCCCTGGGCGCGTCCTCCAA+AGG + chr3_1:5823856-5823875 Msa0345980:intron 75.0%
! GCCCTTTGGAGGACGCGCCC+AGG - chr3_1:5823861-5823880 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 5819870 5825844 5819870 ID=Msa0345980;Name=Msa0345980
chr3_1 mRNA 5819870 5825844 5819870 ID=Msa0345980-mRNA-1;Parent=Msa0345980;Name=Msa0345980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.85|1|1|1|7|331|1207
chr3_1 exon 5819870 5821493 5819870 ID=Msa0345980-mRNA-1:exon:1696;Parent=Msa0345980-mRNA-1
chr3_1 exon 5821907 5822213 5821907 ID=Msa0345980-mRNA-1:exon:1697;Parent=Msa0345980-mRNA-1
chr3_1 exon 5822442 5823108 5822442 ID=Msa0345980-mRNA-1:exon:1698;Parent=Msa0345980-mRNA-1
chr3_1 exon 5823223 5823346 5823223 ID=Msa0345980-mRNA-1:exon:1699;Parent=Msa0345980-mRNA-1
chr3_1 exon 5823478 5823697 5823478 ID=Msa0345980-mRNA-1:exon:1700;Parent=Msa0345980-mRNA-1
chr3_1 exon 5824163 5824621 5824163 ID=Msa0345980-mRNA-1:exon:1701;Parent=Msa0345980-mRNA-1
chr3_1 exon 5825291 5825844 5825291 ID=Msa0345980-mRNA-1:exon:1702;Parent=Msa0345980-mRNA-1
chr3_1 CDS 5819870 5821493 5819870 ID=Msa0345980-mRNA-1:cds;Parent=Msa0345980-mRNA-1
chr3_1 CDS 5821907 5822213 5821907 ID=Msa0345980-mRNA-1:cds;Parent=Msa0345980-mRNA-1
chr3_1 CDS 5822442 5823108 5822442 ID=Msa0345980-mRNA-1:cds;Parent=Msa0345980-mRNA-1
chr3_1 CDS 5823223 5823346 5823223 ID=Msa0345980-mRNA-1:cds;Parent=Msa0345980-mRNA-1
chr3_1 CDS 5823478 5823697 5823478 ID=Msa0345980-mRNA-1:cds;Parent=Msa0345980-mRNA-1
chr3_1 CDS 5824163 5824621 5824163 ID=Msa0345980-mRNA-1:cds;Parent=Msa0345980-mRNA-1
chr3_1 CDS 5825291 5825513 5825291 ID=Msa0345980-mRNA-1:cds;Parent=Msa0345980-mRNA-1
chr3_1 three_prime_UTR 5825514 5825844 5825514 ID=Msa0345980-mRNA-1:three_prime_utr;Parent=Msa0345980-mRNA-1
Gene Sequence

>Msa0345980

ATGGATTCTAAGAGACCACTTTTGTTACAATCTCCAAGAACACCAAATGATCAATATATTCCTACAATACCAGTTTTTCCTGAGCTACCAAAATCGAAGTCAACATTTTCCGGTGTTGAGTTCGGTCAAGTTGAGAATAAAAACTCTTCAAACTCATCATCATCAAGCAAAACTTCCATGTCCATTCATTCAATGGGTTCTAGCAAGAGGAACAATTCTGTAAGGGAAATGAGTAGTTTAAACCAGTCAGGATCAAAAAATCCTGTGAGGTATGGTTCAAAAGGTGGTGGTGATTCTGAAGGGTTAACCATGTCACAAAGAGAACTTAGAGATGAAGATGCAAGATTGGTATATATCAATGATCCTGAGAAAACCAATGAGAATTTTGAGTTTTTCGGAAATTCAATTCGAACTGCTAAATACTCAATCCTCACTTTCATTCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATATATTTTCTTATCATTGCTATTCTCAATCAGCTTCCTCAACTTGCGGTATTTGGAAGATATGTTTCGATTCTACCGTTGGCTTTTGTTCTGTTTGTTACTGGCGTGAAAGATGCTTTTGAGGATTGGAGAAGACACAATTCAGATAAAGTTGAGAATAACAGGTTAGCAACAATTTTGATGAATGACGGTAGTTTCATTGAGAAGAAATGGAAGGATATTCGAGTTGGTGAGATTGTAAAAATCAAAACAAATGAAACAATTCCTTGTGATATTGTTTTGTTATCAACTAGTGATCCAACTGGTGTTGCATATGTGCAAACTATTAATCTTGATGGTGAGTCTAATTTGAAGACTAGGTATGCGAAACAGGAGACGGGTTCAAAGGTTCAACCGAGGTATACTGGTTTGATTAAGTGTGAGAAACCGAATAGGAATATATATGGATTTATGGCGAATATGGAAATCGATGGTAAGAAGTTATCACTTGGATCAACCAACATTGTGCTTAGAGGATGTGAGCTTAAGAATACTAGTTGGGCACTTGGTGTCGCAGTCTATTGTGGCCGCGAGACTAAAGCTATGCTTAACAATTCAGGAGCTCCATCGAAAAGAAGTAGGCTGGAGACGCGGATGAATTACGAAATCATCATGCTGTCTTTCTTTCTCGTTGCATTGTGTACAATCACATCTGTTTGTTCTGCGGTTTGGTTGAAGCGCCATAAGGATGAGTTGAATCTGTTGCCGTATTATAGGAAACTTGATTTTTCAAAGCCGGAAGTTGAAGACTATAAGTACTATGGATGGGGATTGGAAATCTTTTTCACATTCCTTATGTCAGTTATAGTTTACCAGGTCATGATTCCTATTGCTTTGTACATTTCTATGGAGCTTGTTCGTGTTGGCCAGGCCTATTTCATGATCGAAGACGATCGATTGTATGATGAGGCTACCAATACAAAGTTTCAGTGCAGAGCTTTGAATATTAATGAAGATTTGGGGCAAATTAAGTATGTGTTCTCAGATAAAACTGGTACACTTACTGAAAATAAGATGGAGTTTCAATGTGCAAGCATACGAGGAGTCGATTACAGTGCCACAAAAACCGGCATGGAGAATGAACTAGGTGAATACTCAGTGCAAGTTGATGGAAAGATCTTAAAGCCAATGATGAAGGTGAAAGTTAGTCCAGAGCTTTTGCAATTGGCAAGAAATGGAGTTGAAAATGTGGAAGGAAAAAAGATTTATGATTTCTTTCTAGCACTTGCAACCTGCAATACTATTGTGCCTATTGTTGTTGACACGCCCGATCCTGATGTCAAGCTGTTAGATTACCAAGGTGAATCGCCTGATGAACAAGCATTGGCATATGCCGCTGCTGCCTATGGTTTTATGCTTATCGAACGAACTTCCGGCCACATAGTCATTGATATTCATGGACAAAGACTCAAGTTCAATGTGTTGGGTTTACATGAATTTGACAGTGATAGAAAAAGAATGTCGGTTATACTAGGCTACCCTGACAGTTCAGTAAAACTCTTTGTCAAAGGAGCAGACACAACCATGTTTAGTGTAATAGACAAATCACACAACATGGACGTAATAAAGGCCACAGAAACTCATCTTCACTCTTACTCTTCCCTAGGTTTAAGAACACTTGTTATTGGAATGAAAGAACTAAGCACTTCAGAGTTTGAAGAATGGCATGCAGCCTATGAAGCAGCAAGCACTGCGGTATTTGGTCGGGCTGCAATGCTTAAAAAAATTTCAAACCATGTTGAAAGCAATGTTTCCATATTAGGAGCATCTGCTATCGAAGATAAACTTCAACAAGGTGTGCCGGAAGCAATTGAGTCGCTGAGAGCAGCAGGGATTAAAGTTTGGGTTTTGACTGGTGACAAGCAAGAAACTGCTATATCTATTGGATTCTCATCAAAACTTTTGACAAGAAACATGACTCAAATTATTATTAATAGTAATAGTAAAGTGTCATGTAGAAAAAGTCTCAAAGATGCTCTTGAAAGGTCTAGAAAACTTGATGCCGTTGCAACACAGATAGCTTTGATTATTGATGGTGGAAGCCTTGTACACATACTCGACAGTGAACATGAAGAAGAGTTGTTTCAACTTGCAAGTTTGTGTTCTGTCGTTCTTTGTTGTCGAGTGGCTCCACTGCAAAAGGCTGGTATTGTTTCCCTTGTGAAGAAGAGGACATCTGACATGACACTAGCCATCGGAGATGGTGCCAATGATGTATCAATGATTCAAATGGCTGATGTTGGAGTTGGTATAAGTGGACAAGAGGGTAGGCAAGCTGTAATGGCATCAGATTTTGCAATGGGACAATTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGTCACTGGAATTATCAAAGGCTTGGTTACATGATACTATACAATTTCTACAGAAATGCAATCCTTGTTCTTGTCCTATTTTGGTATGTTCTCTACACTGCCTTCACTTCAACAACTGCAATAAATGAATGGAGCTCCACATTGTACTCAATAATCTACAGTGCACTACCAACTATTATTGTTGGAATTCTTGACAAAGATCTTAGCAGAAGCACTCTCCTAAAGTATCCTCAACTTTATAGTGCTGGACAAAGAGATGAAGCCTACAACAAGAAACTGTTTTTGTTAACAATGGTTGATACTTTGTGGCAAAGCATGGTTGTATTTTGGCCTCCACTCTTTGCATATTGGAAAAGTACTATTGATATAGCAAGCATAGGAGACCTTTGGACTCTTGCTGTGGTTATTTTGGTCAATTTACATTTGGCTATGGATGTTGTTAGATGGTATTGGGTGACTCATGCAGTCATTTGGGGATCTATTGCTGCTACATTCATTTCTGTCATGATCATTGATGCCATACCTCAACTTCCTGGTTACTGGGCCTTCTTTCATGTTTCAAGTACTGGACTGTTCTGGGCATTGTTGCTAGGAATTGTGATAGCAGCATTGCTTCCACGTTTGGTTGTAAAATATATTTATCAATATTATTTTCCTAGTGATATTCAAATATCTAGAGAAGCTGAAAAGATGAGAGAATATCAAAGAGTTGCTGAAAATGGTCAAATAGAAATGCTTCCTATCACATATCATCAACCAAGATAA
Protein sequence

>Msa0345980

MDSKRPLLLQSPRTPNDQYIPTIPVFPELPKSKSTFSGVEFGQVENKNSSNSSSSSKTSMSIHSMGSSKRNNSVREMSSLNQSGSKNPVRYGSKGGGDSEGLTMSQRELRDEDARLVYINDPEKTNENFEFFGNSIRTAKYSILTFIPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRYVSILPLAFVLFVTGVKDAFEDWRRHNSDKVENNRLATILMNDGSFIEKKWKDIRVGEIVKIKTNETIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETGSKVQPRYTGLIKCEKPNRNIYGFMANMEIDGKKLSLGSTNIVLRGCELKNTSWALGVAVYCGRETKAMLNNSGAPSKRSRLETRMNYEIIMLSFFLVALCTITSVCSAVWLKRHKDELNLLPYYRKLDFSKPEVEDYKYYGWGLEIFFTFLMSVIVYQVMIPIALYISMELVRVGQAYFMIEDDRLYDEATNTKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIRGVDYSATKTGMENELGEYSVQVDGKILKPMMKVKVSPELLQLARNGVENVEGKKIYDFFLALATCNTIVPIVVDTPDPDVKLLDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGQRLKFNVLGLHEFDSDRKRMSVILGYPDSSVKLFVKGADTTMFSVIDKSHNMDVIKATETHLHSYSSLGLRTLVIGMKELSTSEFEEWHAAYEAASTAVFGRAAMLKKISNHVESNVSILGASAIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGFSSKLLTRNMTQIIINSNSKVSCRKSLKDALERSRKLDAVATQIALIIDGGSLVHILDSEHEEELFQLASLCSVVLCCRVAPLQKAGIVSLVKKRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAILVLVLFWYVLYTAFTSTTAINEWSSTLYSIIYSALPTIIVGILDKDLSRSTLLKYPQLYSAGQRDEAYNKKLFLLTMVDTLWQSMVVFWPPLFAYWKSTIDIASIGDLWTLAVVILVNLHLAMDVVRWYWVTHAVIWGSIAATFISVMIIDAIPQLPGYWAFFHVSSTGLFWALLLGIVIAALLPRLVVKYIYQYYFPSDIQISREAEKMREYQRVAENGQIEMLPITYHQPR*