Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415110 | sp|Q9T072|BH025_ARATH | 40.306 | 196 | 102 | 5 | 38 | 225 | 133 | 321 | 5.64e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415110 | G7IMB4 | 92.174 | 230 | 15 | 3 | 6 | 234 | 2 | 229 | 9.21e-149 | 423 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1415110 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040190 | Msa1415110 | 0.806679 | 7.315438e-50 | -8.615850e-47 |
| Msa1357170 | Msa1415110 | 0.800570 | 1.354580e-48 | -8.615850e-47 |
| Msa1415110 | Msa1432470 | 0.802784 | 4.759885e-49 | -8.615850e-47 |
| Msa0619060 | Msa1415110 | 0.808319 | 3.283478e-50 | -8.615850e-47 |
| Msa0660410 | Msa1415110 | 0.801332 | 9.464449e-49 | -8.615850e-47 |
| Msa0134550 | Msa1415110 | 0.820619 | 6.233079e-53 | -8.615850e-47 |
| Msa0189050 | Msa1415110 | 0.801919 | 7.174503e-49 | -8.615850e-47 |
| Msa0227140 | Msa1415110 | 0.973276 | 3.720266e-136 | -8.615850e-47 |
| Msa0415460 | Msa1415110 | 0.805494 | 1.299547e-49 | -8.615850e-47 |
| Msa0305430 | Msa1415110 | 0.857418 | 1.655074e-62 | -8.615850e-47 |
| Msa1157160 | Msa1415110 | 0.800301 | 1.537036e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415110 | MtrunA17_Chr2g0333611 | 92.342 | 222 | 14 | 3 | 14 | 234 | 1 | 220 | 1.36e-146 | 407 |
| Msa1415110 | MtrunA17_Chr2g0333621 | 46.798 | 203 | 93 | 3 | 37 | 231 | 118 | 313 | 1.07e-51 | 170 |
| Msa1415110 | MtrunA17_Chr8g0336681 | 46.231 | 199 | 94 | 3 | 45 | 233 | 144 | 339 | 1.08e-50 | 168 |
| Msa1415110 | MtrunA17_Chr4g0002801 | 47.692 | 195 | 86 | 3 | 47 | 230 | 142 | 331 | 3.64e-50 | 166 |
| Msa1415110 | MtrunA17_Chr4g0002781 | 47.396 | 192 | 88 | 3 | 47 | 230 | 164 | 350 | 5.18e-48 | 161 |
| Msa1415110 | MtrunA17_Chr2g0333641 | 45.128 | 195 | 95 | 3 | 37 | 226 | 117 | 304 | 1.48e-43 | 149 |
| Msa1415110 | MtrunA17_Chr5g0400661 | 43.316 | 187 | 85 | 5 | 56 | 225 | 148 | 330 | 1.07e-41 | 144 |
| Msa1415110 | MtrunA17_Chr5g0400621 | 42.553 | 188 | 94 | 4 | 50 | 230 | 150 | 330 | 7.32e-41 | 142 |
| Msa1415110 | MtrunA17_Chr2g0280161 | 43.258 | 178 | 90 | 4 | 54 | 225 | 174 | 346 | 3.57e-40 | 141 |
| Msa1415110 | MtrunA17_Chr5g0400671 | 41.304 | 184 | 101 | 4 | 48 | 229 | 145 | 323 | 4.34e-39 | 137 |
| Msa1415110 | MtrunA17_Chr4g0054581 | 41.667 | 204 | 101 | 7 | 38 | 231 | 181 | 376 | 6.23e-39 | 138 |
| Msa1415110 | MtrunA17_Chr7g0249811 | 45.745 | 188 | 92 | 4 | 47 | 233 | 154 | 332 | 2.58e-38 | 135 |
| Msa1415110 | MtrunA17_Chr2g0307131 | 36.364 | 198 | 123 | 3 | 38 | 234 | 161 | 356 | 5.91e-38 | 135 |
| Msa1415110 | MtrunA17_Chr4g0049331 | 40.449 | 178 | 90 | 4 | 56 | 225 | 134 | 303 | 1.52e-37 | 133 |
| Msa1415110 | MtrunA17_Chr2g0333541 | 43.541 | 209 | 93 | 6 | 31 | 225 | 67 | 264 | 6.07e-37 | 130 |
| Msa1415110 | MtrunA17_Chr6g0468491 | 39.109 | 202 | 114 | 4 | 34 | 231 | 115 | 311 | 2.86e-36 | 130 |
| Msa1415110 | MtrunA17_Chr4g0054561 | 39.785 | 186 | 102 | 5 | 50 | 231 | 148 | 327 | 1.46e-35 | 128 |
| Msa1415110 | MtrunA17_Chr4g0033391 | 36.082 | 194 | 119 | 2 | 38 | 231 | 130 | 318 | 4.15e-35 | 127 |
| Msa1415110 | MtrunA17_Chr2g0307141 | 37.288 | 177 | 109 | 2 | 56 | 231 | 182 | 357 | 8.66e-35 | 127 |
| Msa1415110 | MtrunA17_Chr4g0033291 | 39.894 | 188 | 108 | 2 | 44 | 231 | 144 | 326 | 2.46e-34 | 125 |
| Msa1415110 | MtrunA17_Chr4g0054621 | 34.419 | 215 | 116 | 4 | 35 | 231 | 132 | 339 | 5.34e-34 | 124 |
| Msa1415110 | MtrunA17_Chr4g0054551 | 37.968 | 187 | 104 | 5 | 50 | 231 | 148 | 327 | 1.24e-33 | 123 |
| Msa1415110 | MtrunA17_Chr4g0033281 | 36.181 | 199 | 99 | 4 | 44 | 231 | 142 | 323 | 8.79e-33 | 121 |
| Msa1415110 | MtrunA17_Chr7g0225901 | 36.967 | 211 | 106 | 8 | 16 | 209 | 40 | 240 | 1.56e-32 | 119 |
| Msa1415110 | MtrunA17_Chr4g0054571 | 37.745 | 204 | 104 | 4 | 43 | 231 | 136 | 331 | 2.62e-29 | 112 |
| Msa1415110 | MtrunA17_Chr6g0468461 | 34.021 | 194 | 101 | 4 | 16 | 209 | 145 | 311 | 4.88e-28 | 108 |
| Msa1415110 | MtrunA17_Chr5g0400641 | 36.810 | 163 | 89 | 4 | 60 | 215 | 1 | 156 | 9.11e-27 | 101 |
| Msa1415110 | MtrunA17_Chr4g0002831 | 37.725 | 167 | 92 | 4 | 60 | 225 | 45 | 200 | 5.70e-26 | 100 |
| Msa1415110 | MtrunA17_Chr7g0233441 | 30.667 | 225 | 123 | 5 | 1 | 225 | 1 | 192 | 1.56e-25 | 99.0 |
| Msa1415110 | MtrunA17_Chr4g0002851 | 30.131 | 229 | 119 | 7 | 1 | 225 | 1 | 192 | 3.20e-25 | 98.2 |
| Msa1415110 | MtrunA17_Chr8g0336671 | 52.308 | 65 | 29 | 1 | 23 | 87 | 3 | 65 | 3.95e-14 | 65.5 |
| Msa1415110 | MtrunA17_Chr1g0185621 | 28.777 | 139 | 91 | 2 | 58 | 188 | 476 | 614 | 3.79e-13 | 68.2 |
| Msa1415110 | MtrunA17_Chr7g0275821 | 25.294 | 170 | 118 | 4 | 58 | 227 | 253 | 413 | 4.08e-13 | 67.8 |
| Msa1415110 | MtrunA17_Chr2g0298751 | 22.581 | 217 | 142 | 4 | 30 | 233 | 34 | 237 | 1.01e-11 | 62.8 |
| Msa1415110 | MtrunA17_Chr5g0411341 | 29.787 | 188 | 107 | 8 | 58 | 228 | 494 | 673 | 2.57e-11 | 62.8 |
| Msa1415110 | MtrunA17_Chr8g0386921 | 47.273 | 55 | 29 | 0 | 58 | 112 | 407 | 461 | 9.44e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415110 | AT4G37850.2 | 40.306 | 196 | 102 | 5 | 38 | 225 | 133 | 321 | 5.74e-35 | 127 |
| Msa1415110 | AT4G37850.1 | 40.306 | 196 | 102 | 5 | 38 | 225 | 133 | 321 | 5.74e-35 | 127 |
| Msa1415110 | AT2G22760.1 | 37.634 | 186 | 99 | 5 | 40 | 217 | 106 | 282 | 1.30e-34 | 125 |
| Msa1415110 | AT2G22760.2 | 38.202 | 178 | 93 | 5 | 40 | 209 | 106 | 274 | 3.28e-32 | 119 |
| Msa1415110 | AT2G22770.1 | 38.542 | 192 | 91 | 5 | 55 | 225 | 130 | 315 | 1.98e-31 | 117 |
| Msa1415110 | AT2G22750.2 | 37.688 | 199 | 96 | 5 | 49 | 231 | 118 | 304 | 2.07e-29 | 112 |
| Msa1415110 | AT2G22750.5 | 37.688 | 199 | 96 | 5 | 49 | 231 | 142 | 328 | 3.13e-29 | 112 |
| Msa1415110 | AT2G22750.3 | 37.688 | 199 | 96 | 5 | 49 | 231 | 146 | 332 | 3.79e-29 | 112 |
| Msa1415110 | AT2G22750.1 | 37.688 | 199 | 95 | 6 | 49 | 231 | 118 | 303 | 6.01e-28 | 108 |
| Msa1415110 | AT2G22750.4 | 37.688 | 199 | 95 | 6 | 49 | 231 | 146 | 331 | 9.61e-28 | 108 |
| Msa1415110 | AT4G09820.1 | 32.394 | 142 | 76 | 3 | 43 | 184 | 349 | 470 | 1.55e-15 | 75.5 |
| Msa1415110 | AT5G57150.3 | 25.822 | 213 | 125 | 7 | 1 | 197 | 9 | 204 | 2.13e-13 | 67.4 |
| Msa1415110 | AT5G57150.2 | 25.822 | 213 | 125 | 7 | 1 | 197 | 9 | 204 | 2.38e-13 | 67.4 |
| Msa1415110 | AT4G29930.6 | 24.554 | 224 | 137 | 7 | 3 | 218 | 10 | 209 | 3.02e-13 | 67.0 |
| Msa1415110 | AT5G57150.4 | 25.822 | 213 | 125 | 7 | 1 | 197 | 9 | 204 | 4.40e-13 | 67.4 |
| Msa1415110 | AT5G57150.1 | 25.217 | 230 | 140 | 7 | 1 | 215 | 9 | 221 | 5.43e-13 | 66.6 |
| Msa1415110 | AT4G29930.2 | 23.394 | 218 | 144 | 5 | 3 | 218 | 10 | 206 | 6.20e-13 | 66.2 |
| Msa1415110 | AT5G57150.5 | 25.943 | 212 | 125 | 7 | 1 | 197 | 9 | 203 | 1.51e-12 | 65.1 |
| Msa1415110 | AT5G46760.1 | 25.824 | 182 | 104 | 3 | 58 | 213 | 416 | 592 | 1.63e-12 | 66.6 |
| Msa1415110 | AT1G63650.3 | 29.412 | 153 | 86 | 4 | 54 | 186 | 402 | 552 | 3.16e-12 | 65.9 |
| Msa1415110 | AT1G63650.1 | 29.412 | 153 | 86 | 4 | 54 | 186 | 402 | 552 | 3.16e-12 | 65.9 |
| Msa1415110 | AT1G63650.2 | 29.412 | 153 | 86 | 4 | 54 | 186 | 402 | 552 | 3.16e-12 | 65.9 |
| Msa1415110 | AT5G41315.2 | 26.752 | 157 | 90 | 3 | 54 | 186 | 446 | 601 | 3.53e-12 | 65.9 |
| Msa1415110 | AT5G41315.3 | 26.752 | 157 | 90 | 3 | 54 | 186 | 443 | 598 | 3.62e-12 | 65.9 |
| Msa1415110 | AT5G41315.1 | 26.752 | 157 | 90 | 3 | 54 | 186 | 438 | 593 | 3.75e-12 | 65.9 |
| Msa1415110 | AT4G29930.5 | 23.469 | 196 | 128 | 4 | 3 | 196 | 10 | 185 | 4.69e-12 | 63.9 |
| Msa1415110 | AT1G12860.1 | 24.713 | 174 | 123 | 3 | 58 | 224 | 268 | 440 | 6.83e-12 | 64.7 |
| Msa1415110 | AT1G01260.1 | 27.586 | 174 | 100 | 5 | 54 | 227 | 430 | 577 | 7.96e-12 | 64.7 |
| Msa1415110 | AT1G01260.2 | 27.586 | 174 | 100 | 5 | 54 | 227 | 430 | 577 | 7.96e-12 | 64.7 |
| Msa1415110 | AT1G01260.3 | 27.586 | 174 | 100 | 5 | 54 | 227 | 430 | 577 | 7.96e-12 | 64.7 |
| Msa1415110 | AT2G46510.1 | 39.394 | 66 | 40 | 0 | 58 | 123 | 396 | 461 | 8.62e-12 | 64.7 |
| Msa1415110 | AT4G17880.1 | 28.415 | 183 | 105 | 7 | 58 | 228 | 417 | 585 | 3.46e-11 | 62.8 |
| Msa1415110 | AT4G29930.1 | 23.013 | 239 | 148 | 8 | 3 | 218 | 10 | 235 | 3.57e-11 | 61.6 |
| Msa1415110 | AT1G12860.2 | 26.144 | 153 | 105 | 3 | 58 | 203 | 268 | 419 | 5.40e-11 | 62.0 |
| Msa1415110 | AT1G32640.1 | 25.000 | 140 | 98 | 2 | 58 | 193 | 453 | 589 | 6.41e-11 | 62.0 |
Find 66 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCACGTAATGATAATT+TGG | 0.206550 | tig0024171:+78153 | Msa1415110:CDS |
| ATGCCAATGGCCTCCACTTC+AGG | 0.214258 | tig0024171:-78196 | None:intergenic |
| CCATGTGTAGCAGCATTATT+AGG | 0.265823 | tig0024171:-76438 | None:intergenic |
| GGAGAATTGGTTCTCTAATA+TGG | 0.295421 | tig0024171:+76221 | Msa1415110:CDS |
| CAGAAGCATCCAACAATAAT+AGG | 0.297499 | tig0024171:+76396 | Msa1415110:CDS |
| TTCTTAAGAGTTGGAGTTGT+AGG | 0.299359 | tig0024171:+78586 | Msa1415110:three_prime_UTR |
| ACATAATGTCAGAGAGAAAA+AGG | 0.300304 | tig0024171:+76502 | Msa1415110:CDS |
| TTAGGTATAGATAAAGTAAA+AGG | 0.327176 | tig0024171:-76183 | None:intergenic |
| GAACAATGTCCTATTATTGT+TGG | 0.353321 | tig0024171:-76405 | None:intergenic |
| TGTATTTATCGGGTGATCTA+TGG | 0.368338 | tig0024171:-76152 | None:intergenic |
| ATAGACAAGGTTTCTGTACT+TGG | 0.374394 | tig0024171:+78013 | Msa1415110:CDS |
| ACCAGCAGTGTGCTTCCATT+TGG | 0.381044 | tig0024171:+78325 | Msa1415110:CDS |
| TGGAGAATTGGTGGGAGAAT+TGG | 0.381146 | tig0024171:+76208 | Msa1415110:CDS |
| GTTCAAACTATTGTCAATGC+TGG | 0.402081 | tig0024171:+78279 | Msa1415110:CDS |
| CTATACCTAACATGGAGAAT+TGG | 0.414546 | tig0024171:+76196 | Msa1415110:exon |
| AGAGAGATTCATAGCACTTT+CGG | 0.417342 | tig0024171:+76539 | Msa1415110:CDS |
| GGCAGATGGGTGAGGAATAC+AGG | 0.417383 | tig0024171:+78464 | Msa1415110:intron |
| ATTGATGACAAAGTTGAAAC+AGG | 0.417457 | tig0024171:+78501 | Msa1415110:CDS |
| TCCCACCAATTCTCCATGTT+AGG | 0.422680 | tig0024171:-76201 | None:intergenic |
| TCTTAAGAGTTGGAGTTGTA+GGG | 0.440373 | tig0024171:+78587 | Msa1415110:three_prime_UTR |
| AAGTTATAGTTCTTAAGAGT+TGG | 0.441351 | tig0024171:+78577 | Msa1415110:three_prime_UTR |
| TTCAGGGAGGAGCACATGAT+TGG | 0.447101 | tig0024171:-78179 | None:intergenic |
| TGCCAATGGCCTCCACTTCA+GGG | 0.452486 | tig0024171:-78195 | None:intergenic |
| AAACATTACCTTAGCAATGA+TGG | 0.455229 | tig0024171:-78368 | None:intergenic |
| AAGGAGAGGGATCGTGAAGC+TGG | 0.456447 | tig0024171:-76088 | None:intergenic |
| CTCCCTGAAGTGGAGGCCAT+TGG | 0.457623 | tig0024171:+78193 | Msa1415110:CDS |
| AGGAGGGTATCTGTATTTAT+CGG | 0.461686 | tig0024171:-76163 | None:intergenic |
| AATAATTGTGTGTGAAGGAG+AGG | 0.462148 | tig0024171:-76102 | None:intergenic |
| CTACACATGGAAAGAATAAG+AGG | 0.462322 | tig0024171:+76451 | Msa1415110:CDS |
| TGTTGGATGCTTCTGATTGA+AGG | 0.471742 | tig0024171:-76388 | None:intergenic |
| CTTCTCTGATTCTATGCCAA+TGG | 0.479471 | tig0024171:-78209 | None:intergenic |
| TCCAAATGGAAGCACACTGC+TGG | 0.484948 | tig0024171:-78326 | None:intergenic |
| TTAATATCTATAGGATATGA+AGG | 0.498841 | tig0024171:+76353 | Msa1415110:intron |
| TAAAGAACGCATATCAATGC+TGG | 0.499426 | tig0024171:+78063 | Msa1415110:CDS |
| GGTATAGATAAAGTAAAAGG+AGG | 0.507865 | tig0024171:-76180 | None:intergenic |
| GGAGGGTATCTGTATTTATC+GGG | 0.511314 | tig0024171:-76162 | None:intergenic |
| AGCAATGATGGTAATGTTGA+GGG | 0.515073 | tig0024171:-78356 | None:intergenic |
| CCTAATAATGCTGCTACACA+TGG | 0.515165 | tig0024171:+76438 | Msa1415110:CDS |
| TACCTAACATGGAGAATTGG+TGG | 0.525198 | tig0024171:+76199 | Msa1415110:exon |
| TATGATACCCGGCTTGAAGA+AGG | 0.532421 | tig0024171:+76563 | Msa1415110:CDS |
| TACTTTATCTATACCTAACA+TGG | 0.533893 | tig0024171:+76188 | Msa1415110:exon |
| AAATGGAAGCACACTGCTGG+TGG | 0.542174 | tig0024171:-78323 | None:intergenic |
| GCACTTTCGGCTATGATACC+CGG | 0.547609 | tig0024171:+76552 | Msa1415110:CDS |
| TCATGTGCTCCTCCCTGAAG+TGG | 0.548063 | tig0024171:+78183 | Msa1415110:CDS |
| GGAACTGACCTTCTTCAAGC+CGG | 0.556400 | tig0024171:-76571 | None:intergenic |
| TAGCAATGATGGTAATGTTG+AGG | 0.557198 | tig0024171:-78357 | None:intergenic |
| TAAGAGGGTGAGAAGCTCAT+GGG | 0.563045 | tig0024171:+76467 | Msa1415110:CDS |
| CAACATTACCATCATTGCTA+AGG | 0.570598 | tig0024171:+78360 | Msa1415110:CDS |
| GTATAGATAAAGTAAAAGGA+GGG | 0.576956 | tig0024171:-76179 | None:intergenic |
| ATAAGAGGGTGAGAAGCTCA+TGG | 0.579940 | tig0024171:+76466 | Msa1415110:CDS |
| GAACTGACCTTCTTCAAGCC+GGG | 0.582458 | tig0024171:-76570 | None:intergenic |
| GGGTATGAATGTGAACAGAA+AGG | 0.582478 | tig0024171:+78607 | Msa1415110:three_prime_UTR |
| ATAATTGTGTGTGAAGGAGA+GGG | 0.583451 | tig0024171:-76101 | None:intergenic |
| ATCAACTGCGAGAAACATGA+AGG | 0.584639 | tig0024171:+78250 | Msa1415110:CDS |
| CACTGCTGGTGGAAACATAG+AGG | 0.588212 | tig0024171:-78312 | None:intergenic |
| ACCTAACATGGAGAATTGGT+GGG | 0.590580 | tig0024171:+76200 | Msa1415110:exon |
| TGTGCTCCTCCCTGAAGTGG+AGG | 0.603078 | tig0024171:+78186 | Msa1415110:CDS |
| AGAAGCTCATGGGAGATACA+AGG | 0.603853 | tig0024171:+76477 | Msa1415110:CDS |
| ACTTGTTAGATACACTAGCA+TGG | 0.633985 | tig0024171:-78558 | None:intergenic |
| GAATCCAAATTATCATTACG+TGG | 0.646914 | tig0024171:-78157 | None:intergenic |
| CATTGGCATAGAATCAGAGA+AGG | 0.647651 | tig0024171:+78210 | Msa1415110:CDS |
| TACACATGGAAAGAATAAGA+GGG | 0.651853 | tig0024171:+76452 | Msa1415110:CDS |
| TAATATCTATAGGATATGAA+GGG | 0.651855 | tig0024171:+76354 | Msa1415110:intron |
| TGGAGCAACAATGTTATGAG+AGG | 0.657981 | tig0024171:+78083 | Msa1415110:CDS |
| TTTACTTGTATAGATAGACA+AGG | 0.695353 | tig0024171:+78000 | Msa1415110:intron |
| CAATGGCCTCCACTTCAGGG+AGG | 0.758935 | tig0024171:-78192 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATAATAAATTAACAC+AGG | + | tig0024171:77612-77631 | Msa1415110:intron | 10.0% |
| !!! | AAATTTTTTAATAGAGATTA+TGG | - | tig0024171:78128-78147 | None:intergenic | 10.0% |
| !!! | ATTAACTTTTTATAATGGAT+AGG | + | tig0024171:76693-76712 | Msa1415110:intron | 15.0% |
| !! | AGAAAAAATTAAAGTTGTAT+TGG | + | tig0024171:76919-76938 | Msa1415110:intron | 15.0% |
| !! | TACAATATAATTGAATTACT+TGG | - | tig0024171:77087-77106 | None:intergenic | 15.0% |
| !!! | ATAATTAAGCTTGTTAATTT+TGG | - | tig0024171:77479-77498 | None:intergenic | 15.0% |
| !! | TTGATAAAATGTTAATTACA+TGG | + | tig0024171:78432-78451 | Msa1415110:intron | 15.0% |
| !! | AAAAAAATAATTGTGTGTGA+AGG | - | tig0024171:76110-76129 | None:intergenic | 20.0% |
| !! | TTAGGTATAGATAAAGTAAA+AGG | - | tig0024171:76186-76205 | None:intergenic | 20.0% |
| !! | TATAGATATTAAACACAACA+AGG | - | tig0024171:76345-76364 | None:intergenic | 20.0% |
| !! | TTGTTGTGTTTAATATCTAT+AGG | + | tig0024171:76344-76363 | Msa1415110:intron | 20.0% |
| !! | TTAATATCTATAGGATATGA+AGG | + | tig0024171:76353-76372 | Msa1415110:intron | 20.0% |
| !! | TAATATCTATAGGATATGAA+GGG | + | tig0024171:76354-76373 | Msa1415110:intron | 20.0% |
| !! | AAACATGGAAATACTAAATA+TGG | + | tig0024171:76649-76668 | Msa1415110:intron | 20.0% |
| !!! | GCTTTTTTGACAATATTTAA+TGG | + | tig0024171:77031-77050 | Msa1415110:intron | 20.0% |
| !! | TTGTAAGATGTTTAAATAGT+GGG | - | tig0024171:77130-77149 | None:intergenic | 20.0% |
| !! | TTTGTAAGATGTTTAAATAG+TGG | - | tig0024171:77131-77150 | None:intergenic | 20.0% |
| !! | ATTAATTTAGTTGAGATACA+TGG | - | tig0024171:77325-77344 | None:intergenic | 20.0% |
| !!! | ATTTTTAGTATAGTCATTAG+AGG | + | tig0024171:77408-77427 | Msa1415110:intron | 20.0% |
| !! | AAATAAAGAGTGAGAATAAA+AGG | + | tig0024171:77810-77829 | Msa1415110:intron | 20.0% |
| !! | AATAAAGAGTGAGAATAAAA+GGG | + | tig0024171:77811-77830 | Msa1415110:intron | 20.0% |
| !!! | TTCAAGTATTTTTGTTGATA+AGG | + | tig0024171:77862-77881 | Msa1415110:intron | 20.0% |
| !!! | TTTTTACACTCTTAAGTTTT+AGG | + | tig0024171:77930-77949 | Msa1415110:intron | 20.0% |
| !!! | TTAATTACATGGATTTTATG+TGG | + | tig0024171:78443-78462 | Msa1415110:intron | 20.0% |
| ! | GTATAGATAAAGTAAAAGGA+GGG | - | tig0024171:76182-76201 | None:intergenic | 25.0% |
| ! | TACTTTATCTATACCTAACA+TGG | + | tig0024171:76188-76207 | Msa1415110:exon | 25.0% |
| !!! | GTTTTTTGTAGATCAAAACA+TGG | + | tig0024171:76634-76653 | Msa1415110:intron | 25.0% |
| !! | CTAAATATGGATTAAACATG+AGG | + | tig0024171:76662-76681 | Msa1415110:intron | 25.0% |
| !!! | TGTCTTGTTCTTTTAAAGTA+AGG | - | tig0024171:76831-76850 | None:intergenic | 25.0% |
| !! | AAAAGTTGGAGTATTTATTG+AGG | + | tig0024171:76885-76904 | Msa1415110:intron | 25.0% |
| !! | AAAGTTGGAGTATTTATTGA+GGG | + | tig0024171:76886-76905 | Msa1415110:intron | 25.0% |
| !!! | AAGTGACAATCATTTTGAAA+CGG | + | tig0024171:76984-77003 | Msa1415110:intron | 25.0% |
| ! | TTGTATTTAGTAGTGATACA+TGG | + | tig0024171:77102-77121 | Msa1415110:intron | 25.0% |
| ! | TGTAAGATGTTTAAATAGTG+GGG | - | tig0024171:77129-77148 | None:intergenic | 25.0% |
| ! | TACAAGATTAATTCAGTTCA+TGG | + | tig0024171:77203-77222 | Msa1415110:intron | 25.0% |
| !! | TTGGCTTATCAATGTATTTT+GGG | - | tig0024171:77369-77388 | None:intergenic | 25.0% |
| !!! | TTTGGCTTATCAATGTATTT+TGG | - | tig0024171:77370-77389 | None:intergenic | 25.0% |
| ! | AATACATTGATAAGCCAAAA+AGG | + | tig0024171:77371-77390 | Msa1415110:intron | 25.0% |
| !! | AGATTTTCTTTGTACCTTTT+TGG | - | tig0024171:77388-77407 | None:intergenic | 25.0% |
| ! | GGACATAAATAAATTAACAC+AGG | + | tig0024171:77542-77561 | Msa1415110:intron | 25.0% |
| ! | TTTACTTGTATAGATAGACA+AGG | + | tig0024171:78000-78019 | Msa1415110:intron | 25.0% |
| ! | AAGTTATAGTTCTTAAGAGT+TGG | + | tig0024171:78577-78596 | Msa1415110:three_prime_UTR | 25.0% |
| GGTATAGATAAAGTAAAAGG+AGG | - | tig0024171:76183-76202 | None:intergenic | 30.0% | |
| GAACAATGTCCTATTATTGT+TGG | - | tig0024171:76408-76427 | None:intergenic | 30.0% | |
| TACACATGGAAAGAATAAGA+GGG | + | tig0024171:76452-76471 | Msa1415110:CDS | 30.0% | |
| ACATAATGTCAGAGAGAAAA+AGG | + | tig0024171:76502-76521 | Msa1415110:CDS | 30.0% | |
| GTATATATTGAAGAAGAAGC+AGG | - | tig0024171:76595-76614 | None:intergenic | 30.0% | |
| GTATTTATTGAGGGTAAAGT+TGG | + | tig0024171:76895-76914 | Msa1415110:intron | 30.0% | |
| ! | TAAGTTTGAGTTCTTATGCT+TGG | - | tig0024171:77453-77472 | None:intergenic | 30.0% |
| TTTGTTACTCACATTTACAG+AGG | - | tig0024171:77519-77538 | None:intergenic | 30.0% | |
| GTAAATGTGAGTAACAAAGA+AGG | + | tig0024171:77521-77540 | Msa1415110:intron | 30.0% | |
| ATTATGACATGTGACTTATG+AGG | + | tig0024171:77899-77918 | Msa1415110:intron | 30.0% | |
| TCATCCACGTAATGATAATT+TGG | + | tig0024171:78153-78172 | Msa1415110:CDS | 30.0% | |
| GAATCCAAATTATCATTACG+TGG | - | tig0024171:78160-78179 | None:intergenic | 30.0% | |
| !!! | TTGAGGGTATTTTTTCCAAA+TGG | - | tig0024171:78343-78362 | None:intergenic | 30.0% |
| AAACATTACCTTAGCAATGA+TGG | - | tig0024171:78371-78390 | None:intergenic | 30.0% | |
| ! | ATTGATGACAAAGTTGAAAC+AGG | + | tig0024171:78501-78520 | Msa1415110:CDS | 30.0% |
| ATAATTGTGTGTGAAGGAGA+GGG | - | tig0024171:76104-76123 | None:intergenic | 35.0% | |
| AATAATTGTGTGTGAAGGAG+AGG | - | tig0024171:76105-76124 | None:intergenic | 35.0% | |
| TGTATTTATCGGGTGATCTA+TGG | - | tig0024171:76155-76174 | None:intergenic | 35.0% | |
| !! | AGGAGGGTATCTGTATTTAT+CGG | - | tig0024171:76166-76185 | None:intergenic | 35.0% |
| CTATACCTAACATGGAGAAT+TGG | + | tig0024171:76196-76215 | Msa1415110:exon | 35.0% | |
| ! | GGAGAATTGGTTCTCTAATA+TGG | + | tig0024171:76221-76240 | Msa1415110:CDS | 35.0% |
| !! | CAGAAGCATCCAACAATAAT+AGG | + | tig0024171:76396-76415 | Msa1415110:CDS | 35.0% |
| CTACACATGGAAAGAATAAG+AGG | + | tig0024171:76451-76470 | Msa1415110:CDS | 35.0% | |
| GAGAAAAAGGAGACAAGAAA+TGG | + | tig0024171:76515-76534 | Msa1415110:CDS | 35.0% | |
| AGAGAGATTCATAGCACTTT+CGG | + | tig0024171:76539-76558 | Msa1415110:CDS | 35.0% | |
| ! | AAAGCGACACTCATTTTGAA+AGG | - | tig0024171:76740-76759 | None:intergenic | 35.0% |
| ATTGTGTGAGAGAGAAAAGT+TGG | + | tig0024171:76871-76890 | Msa1415110:intron | 35.0% | |
| !!! | GACAATCATTTTGAAACGGA+TGG | + | tig0024171:76988-77007 | Msa1415110:intron | 35.0% |
| TCAGTTCATGGCAAAAATTG+TGG | + | tig0024171:77215-77234 | Msa1415110:intron | 35.0% | |
| ATCAATTTCGAGATGAAGCA+AGG | + | tig0024171:77343-77362 | Msa1415110:intron | 35.0% | |
| TTAACACAGGTGATTTCACA+TGG | + | tig0024171:77555-77574 | Msa1415110:intron | 35.0% | |
| ATAGACAAGGTTTCTGTACT+TGG | + | tig0024171:78013-78032 | Msa1415110:CDS | 35.0% | |
| TAAAGAACGCATATCAATGC+TGG | + | tig0024171:78063-78082 | Msa1415110:CDS | 35.0% | |
| GTTCAAACTATTGTCAATGC+TGG | + | tig0024171:78279-78298 | Msa1415110:CDS | 35.0% | |
| ! | AGCAATGATGGTAATGTTGA+GGG | - | tig0024171:78359-78378 | None:intergenic | 35.0% |
| ! | TAGCAATGATGGTAATGTTG+AGG | - | tig0024171:78360-78379 | None:intergenic | 35.0% |
| CAACATTACCATCATTGCTA+AGG | + | tig0024171:78360-78379 | Msa1415110:CDS | 35.0% | |
| ! | ATGGATTTTATGTGGCAGAT+GGG | + | tig0024171:78451-78470 | Msa1415110:intron | 35.0% |
| ! | ACTTGTTAGATACACTAGCA+TGG | - | tig0024171:78561-78580 | None:intergenic | 35.0% |
| TTCTTAAGAGTTGGAGTTGT+AGG | + | tig0024171:78586-78605 | Msa1415110:three_prime_UTR | 35.0% | |
| TCTTAAGAGTTGGAGTTGTA+GGG | + | tig0024171:78587-78606 | Msa1415110:three_prime_UTR | 35.0% | |
| !! | GGAGGGTATCTGTATTTATC+GGG | - | tig0024171:76165-76184 | None:intergenic | 40.0% |
| TACCTAACATGGAGAATTGG+TGG | + | tig0024171:76199-76218 | Msa1415110:exon | 40.0% | |
| ACCTAACATGGAGAATTGGT+GGG | + | tig0024171:76200-76219 | Msa1415110:exon | 40.0% | |
| TGTTGGATGCTTCTGATTGA+AGG | - | tig0024171:76391-76410 | None:intergenic | 40.0% | |
| CCATGTGTAGCAGCATTATT+AGG | - | tig0024171:76441-76460 | None:intergenic | 40.0% | |
| CCTAATAATGCTGCTACACA+TGG | + | tig0024171:76438-76457 | Msa1415110:CDS | 40.0% | |
| !! | CGACACTCATTTTGAAAGGA+TGG | - | tig0024171:76736-76755 | None:intergenic | 40.0% |
| TTCCTTAATCCGTGTGCAAT+TGG | - | tig0024171:76765-76784 | None:intergenic | 40.0% | |
| ! | ATTGCACACGGATTAAGGAA+TGG | + | tig0024171:76765-76784 | Msa1415110:intron | 40.0% |
| !! | CGGATGGAGTACTATTTTAG+TGG | + | tig0024171:77004-77023 | Msa1415110:intron | 40.0% |
| GTTACTCACATTTACAGAGG+AGG | - | tig0024171:77516-77535 | None:intergenic | 40.0% | |
| TGGAGCAACAATGTTATGAG+AGG | + | tig0024171:78083-78102 | Msa1415110:CDS | 40.0% | |
| CTTCTCTGATTCTATGCCAA+TGG | - | tig0024171:78212-78231 | None:intergenic | 40.0% | |
| CATTGGCATAGAATCAGAGA+AGG | + | tig0024171:78210-78229 | Msa1415110:CDS | 40.0% | |
| ATCAACTGCGAGAAACATGA+AGG | + | tig0024171:78250-78269 | Msa1415110:CDS | 40.0% | |
| ! | CATGGATTTTATGTGGCAGA+TGG | + | tig0024171:78450-78469 | Msa1415110:intron | 40.0% |
| GGGTATGAATGTGAACAGAA+AGG | + | tig0024171:78607-78626 | Msa1415110:three_prime_UTR | 40.0% | |
| TCCCACCAATTCTCCATGTT+AGG | - | tig0024171:76204-76223 | None:intergenic | 45.0% | |
| TGGAGAATTGGTGGGAGAAT+TGG | + | tig0024171:76208-76227 | Msa1415110:CDS | 45.0% | |
| ATAAGAGGGTGAGAAGCTCA+TGG | + | tig0024171:76466-76485 | Msa1415110:CDS | 45.0% | |
| TAAGAGGGTGAGAAGCTCAT+GGG | + | tig0024171:76467-76486 | Msa1415110:CDS | 45.0% | |
| AGAAGCTCATGGGAGATACA+AGG | + | tig0024171:76477-76496 | Msa1415110:CDS | 45.0% | |
| ! | TATGATACCCGGCTTGAAGA+AGG | + | tig0024171:76563-76582 | Msa1415110:CDS | 45.0% |
| TCGCTTTAGCCAATTGCACA+CGG | + | tig0024171:76753-76772 | Msa1415110:intron | 45.0% | |
| ! | AGCCAATTGCACACGGATTA+AGG | + | tig0024171:76760-76779 | Msa1415110:intron | 45.0% |
| TTCTTATGCTTGGAGCTTGG+TGG | - | tig0024171:77443-77462 | None:intergenic | 45.0% | |
| GAGTTCTTATGCTTGGAGCT+TGG | - | tig0024171:77446-77465 | None:intergenic | 45.0% | |
| ! | TTTTATGTGGCAGATGGGTG+AGG | + | tig0024171:78456-78475 | Msa1415110:intron | 45.0% |
| !!! | ATGAAATTATTTTTATAAAA+TGG | - | tig0024171:76262-76281 | None:intergenic | 5.0% |
| !!! | ATTATATTAACTTTTTATAA+TGG | + | tig0024171:76688-76707 | Msa1415110:intron | 5.0% |
| GCACTTTCGGCTATGATACC+CGG | + | tig0024171:76552-76571 | Msa1415110:CDS | 50.0% | |
| GAACTGACCTTCTTCAAGCC+GGG | - | tig0024171:76573-76592 | None:intergenic | 50.0% | |
| GGAACTGACCTTCTTCAAGC+CGG | - | tig0024171:76574-76593 | None:intergenic | 50.0% | |
| ! | TTCAGGGAGGAGCACATGAT+TGG | - | tig0024171:78182-78201 | None:intergenic | 50.0% |
| CACTGCTGGTGGAAACATAG+AGG | - | tig0024171:78315-78334 | None:intergenic | 50.0% | |
| ! | AAATGGAAGCACACTGCTGG+TGG | - | tig0024171:78326-78345 | None:intergenic | 50.0% |
| ACCAGCAGTGTGCTTCCATT+TGG | + | tig0024171:78325-78344 | Msa1415110:CDS | 50.0% | |
| ! | TCCAAATGGAAGCACACTGC+TGG | - | tig0024171:78329-78348 | None:intergenic | 50.0% |
| AAGGAGAGGGATCGTGAAGC+TGG | - | tig0024171:76091-76110 | None:intergenic | 55.0% | |
| TCATGTGCTCCTCCCTGAAG+TGG | + | tig0024171:78183-78202 | Msa1415110:CDS | 55.0% | |
| TGCCAATGGCCTCCACTTCA+GGG | - | tig0024171:78198-78217 | None:intergenic | 55.0% | |
| ATGCCAATGGCCTCCACTTC+AGG | - | tig0024171:78199-78218 | None:intergenic | 55.0% | |
| GGCAGATGGGTGAGGAATAC+AGG | + | tig0024171:78464-78483 | Msa1415110:intron | 55.0% | |
| TGTGCTCCTCCCTGAAGTGG+AGG | + | tig0024171:78186-78205 | Msa1415110:CDS | 60.0% | |
| CAATGGCCTCCACTTCAGGG+AGG | - | tig0024171:78195-78214 | None:intergenic | 60.0% | |
| CTCCCTGAAGTGGAGGCCAT+TGG | + | tig0024171:78193-78212 | Msa1415110:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024171 | gene | 76088 | 78644 | 76088 | ID=Msa1415110;Name=Msa1415110 |
| tig0024171 | mRNA | 76088 | 78644 | 76088 | ID=Msa1415110-mRNA-1;Parent=Msa1415110;Name=Msa1415110-mRNA-1;_AED=0.21;_eAED=0.21;_QI=119|1|1|1|1|1|4|95|234 |
| tig0024171 | exon | 76088 | 76242 | 76088 | ID=Msa1415110-mRNA-1:exon:22174;Parent=Msa1415110-mRNA-1 |
| tig0024171 | exon | 76366 | 76584 | 76366 | ID=Msa1415110-mRNA-1:exon:22175;Parent=Msa1415110-mRNA-1 |
| tig0024171 | exon | 78013 | 78381 | 78013 | ID=Msa1415110-mRNA-1:exon:22176;Parent=Msa1415110-mRNA-1 |
| tig0024171 | exon | 78469 | 78644 | 78469 | ID=Msa1415110-mRNA-1:exon:22177;Parent=Msa1415110-mRNA-1 |
| tig0024171 | five_prime_UTR | 76088 | 76206 | 76088 | ID=Msa1415110-mRNA-1:five_prime_utr;Parent=Msa1415110-mRNA-1 |
| tig0024171 | CDS | 76207 | 76242 | 76207 | ID=Msa1415110-mRNA-1:cds;Parent=Msa1415110-mRNA-1 |
| tig0024171 | CDS | 76366 | 76584 | 76366 | ID=Msa1415110-mRNA-1:cds;Parent=Msa1415110-mRNA-1 |
| tig0024171 | CDS | 78013 | 78381 | 78013 | ID=Msa1415110-mRNA-1:cds;Parent=Msa1415110-mRNA-1 |
| tig0024171 | CDS | 78469 | 78549 | 78469 | ID=Msa1415110-mRNA-1:cds;Parent=Msa1415110-mRNA-1 |
| tig0024171 | three_prime_UTR | 78550 | 78644 | 78550 | ID=Msa1415110-mRNA-1:three_prime_utr;Parent=Msa1415110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
