AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0660410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660410 MtrunA17_Chr8g0386941 92.775 346 24 1 1 346 228 572 0.0 629
Msa0660410 MtrunA17_Chr7g0247821 30.380 158 104 3 195 346 755 912 2.72e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 83 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTAACATGGACATTAAT+TGG 0.098262 4_3:+71120030 None:intergenic
ACAAGCTGTTGTAATGTTAT+TGG 0.222383 4_3:+71119105 None:intergenic
ACAACACATGCTTGGAAGTT+TGG 0.253601 4_3:+71119192 None:intergenic
ACCTAAGACAAATGACTTAA+TGG 0.259882 4_3:+71118860 None:intergenic
AAGCACATCTGAACCAATTC+TGG 0.268014 4_3:+71121403 None:intergenic
GCCATTAAGTCATTTGTCTT+AGG 0.288201 4_3:-71118861 Msa0660410:three_prime_UTR
TCCTTTGACTTGTTGTTCAT+TGG 0.294401 4_3:+71119435 None:intergenic
CCATCAATAAGTTTGATAAA+TGG 0.309576 4_3:+71119355 None:intergenic
ACTATAACCTCTTCTTCTTC+TGG 0.312350 4_3:+71120643 None:intergenic
AGACCTTATAACATCCTCTT+TGG 0.324442 4_3:-71119460 Msa0660410:CDS
CCATTTATCAAACTTATTGA+TGG 0.332391 4_3:-71119355 Msa0660410:CDS
GAATGATCGGATAGCAGATT+TGG 0.343186 4_3:-71120600 Msa0660410:five_prime_UTR
TTTGATAAATGGCTCTTCAT+AGG 0.348408 4_3:+71119366 None:intergenic
TTCCAAGTCCTGCGAACTGC+TGG 0.360062 4_3:+71120098 None:intergenic
TACTAACATGGACATTAATT+GGG 0.364399 4_3:+71120031 None:intergenic
TAAGCCTTCAAATTTGCATT+TGG 0.375486 4_3:-71120210 Msa0660410:five_prime_UTR
TTCAAAATTACATCAACATC+AGG 0.377473 4_3:+71121359 None:intergenic
TTCACCAAATGCAAATTTGA+AGG 0.382849 4_3:+71120206 None:intergenic
TCCCAGCAGTTCGCAGGACT+TGG 0.403469 4_3:-71120100 Msa0660410:CDS
CATCTCTATGAAGTGCTTTG+AGG 0.416519 4_3:+71119869 None:intergenic
ATTACAACAGCTTGTTGAAA+GGG 0.423151 4_3:-71119097 Msa0660410:CDS
CATTCTATTTCTATCTTCCA+TGG 0.427164 4_3:+71118836 None:intergenic
GAACTGCTGGGAAATTTACT+TGG 0.433594 4_3:+71120111 None:intergenic
GTATATCATCGAATGTTTCA+TGG 0.442276 4_3:-71119262 Msa0660410:CDS
TTTCACACCTTGGTCCTTCA+CGG 0.447121 4_3:+71119921 None:intergenic
GGCAATGGGAAATCCAGAAT+TGG 0.447724 4_3:-71121416 Msa0660410:five_prime_UTR
TCCATTCACTTCATCAAAAG+TGG 0.447779 4_3:+71119323 None:intergenic
GATCCAAAGAGGATGTTATA+AGG 0.448481 4_3:+71119457 None:intergenic
GTCATTTGTCTTAGGTTCCA+TGG 0.452543 4_3:-71118853 Msa0660410:three_prime_UTR
TTGCAACTCATTACTAAAAG+TGG 0.454464 4_3:+71119789 None:intergenic
TAAGACATGTCATGAGAGTA+AGG 0.458092 4_3:-71120170 Msa0660410:exon
ATGTGTTGTGAGGAAAGTTT+TGG 0.462231 4_3:-71119178 Msa0660410:CDS
TAGAACATTAATCAATAACT+TGG 0.472348 4_3:-71118580 Msa0660410:three_prime_UTR
CTTTCCTCACAACACATGCT+TGG 0.474299 4_3:+71119184 None:intergenic
CTCAAAGCACTTCATAGAGA+TGG 0.475720 4_3:-71119868 Msa0660410:CDS
TATCTTTCGATTGGAGAAAG+AGG 0.494534 4_3:+71118667 None:intergenic
TCAAAGCACTTCATAGAGAT+GGG 0.495966 4_3:-71119867 Msa0660410:CDS
GCAGTGCGGGACAACTGATT+CGG 0.510006 4_3:-71120136 Msa0660410:CDS
CATTACAACAGCTTGTTGAA+AGG 0.512663 4_3:-71119098 Msa0660410:CDS
CACTTTGCTGACACTAGCTC+TGG 0.514081 4_3:-71120248 Msa0660410:five_prime_UTR
TAAATTTCCCAGCAGTTCGC+AGG 0.515356 4_3:-71120106 Msa0660410:CDS
TGGGTAGTTGCTCATGGTGG+TGG 0.521127 4_3:-71118894 Msa0660410:three_prime_UTR
ATAATGTGCATGCAAATTGT+CGG 0.521272 4_3:+71119723 None:intergenic
TGTTGTAATGTTATTGGTGA+TGG 0.522358 4_3:+71119111 None:intergenic
CAATTTCTTCTGCATCAACA+TGG 0.524519 4_3:+71119043 None:intergenic
ACTTGGCCAGACGTGAATCA+TGG 0.524559 4_3:-71119074 Msa0660410:CDS
AGTCATCCATGATTCACGTC+TGG 0.529300 4_3:+71119068 None:intergenic
GGAGAAAAGAACAGCAGTGC+GGG 0.535867 4_3:-71120149 Msa0660410:CDS
TCCAAGTCCTGCGAACTGCT+GGG 0.538815 4_3:+71120099 None:intergenic
ATCATAAATTTGATCACCGT+GGG 0.540757 4_3:-71118913 Msa0660410:three_prime_UTR
ATGTTATAAGGTCTTCAAGA+TGG 0.541014 4_3:+71119469 None:intergenic
GAGATAAAACTTTCACACCT+TGG 0.547276 4_3:+71119911 None:intergenic
ATTATTGAGAGTGATGCATA+TGG 0.552597 4_3:-71118695 Msa0660410:three_prime_UTR
AGTTCGCAGGACTTGGAAGA+TGG 0.556294 4_3:-71120093 Msa0660410:CDS
GCAAGATCCTAACTCTCTGT+TGG 0.561889 4_3:-71120432 Msa0660410:five_prime_UTR
ATCTTTCGATTGGAGAAAGA+GGG 0.568464 4_3:+71118668 None:intergenic
AATGTTATTGGTGATGGATG+AGG 0.570884 4_3:+71119117 None:intergenic
GTATGCTCCAGAAGAAGAAG+AGG 0.572437 4_3:-71120650 Msa0660410:five_prime_UTR
TCCAATGAACAACAAGTCAA+AGG 0.581216 4_3:-71119436 Msa0660410:CDS
GTTGTTCATTGGATCCAAAG+AGG 0.590616 4_3:+71119446 None:intergenic
ACAGCTTGTTGAAAGGGACT+TGG 0.590760 4_3:-71119091 Msa0660410:CDS
GCAAAATAAATTGACCGTGA+AGG 0.591471 4_3:-71119935 Msa0660410:CDS
GTGTACGTGTGGAGAATGAT+CGG 0.594868 4_3:-71120613 Msa0660410:five_prime_UTR
GATGATATACTCATGCAAGA+TGG 0.600077 4_3:+71119275 None:intergenic
ATGTTATTGGTGATGGATGA+GGG 0.600743 4_3:+71119118 None:intergenic
TCACCGTGGGTAGTTGCTCA+TGG 0.602050 4_3:-71118900 Msa0660410:three_prime_UTR
AGAAGAAATTGCAATGGAGG+TGG 0.605756 4_3:-71119031 Msa0660410:CDS
ACTAACATGGACATTAATTG+GGG 0.615194 4_3:+71120032 None:intergenic
TCATGGTGGTGGAGACCGCA+TGG 0.624096 4_3:-71118883 Msa0660410:three_prime_UTR
ACTTCCAAGCATGTGTTGTG+AGG 0.626643 4_3:-71119188 Msa0660410:CDS
AAATTGACCGTGAAGGACCA+AGG 0.639782 4_3:-71119928 Msa0660410:CDS
TAGTTGTAAGAGTGTACGTG+TGG 0.641450 4_3:-71120624 Msa0660410:five_prime_UTR
AATCATAAATTTGATCACCG+TGG 0.641648 4_3:-71118914 Msa0660410:three_prime_UTR
TGCAGAAGAAATTGCAATGG+AGG 0.645966 4_3:-71119034 Msa0660410:CDS
TCAAAATTACATCAACATCA+GGG 0.651505 4_3:+71121360 None:intergenic
TCATTACTAAAAGTGGCCAC+AGG 0.656006 4_3:+71119796 None:intergenic
GCACATTATGATATTCCTAG+AGG 0.662018 4_3:-71119709 Msa0660410:intron
CCACCATGAGCAACTACCCA+CGG 0.670027 4_3:+71118897 None:intergenic
CAAAGCACTTCATAGAGATG+GGG 0.670872 4_3:-71119866 Msa0660410:CDS
TGATGCAGAAGAAATTGCAA+TGG 0.674423 4_3:-71119037 Msa0660410:CDS
CCGTGGGTAGTTGCTCATGG+TGG 0.710283 4_3:-71118897 Msa0660410:three_prime_UTR
AGGAGAAAAGAACAGCAGTG+CGG 0.716182 4_3:-71120150 Msa0660410:CDS
CAAATGACTTAATGGCCATG+CGG 0.729978 4_3:+71118868 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTAATAAATATCTAGAAA+GGG - chr4_3:71118857-71118876 Msa0660410:three_prime_UTR 15.0%
!!! ATTTGTAACTATTTTTTTAG+AGG + chr4_3:71119694-71119713 None:intergenic 15.0%
!! AAAAAACTAGTTATATAATG+AGG + chr4_3:71120292-71120311 None:intergenic 15.0%
!! CTGTTAATAAATATCTAGAA+AGG - chr4_3:71118856-71118875 Msa0660410:three_prime_UTR 20.0%
!! GTTAATAAATATCTAGAAAG+GGG - chr4_3:71118858-71118877 Msa0660410:three_prime_UTR 20.0%
!! TACTATTGTATTATGGTTAA+TGG + chr4_3:71118962-71118981 None:intergenic 20.0%
!!! TTTAAAATGTCATGTATAGT+TGG - chr4_3:71119204-71119223 Msa0660410:CDS 20.0%
!! TACTAAATCATTCATGTAAT+GGG + chr4_3:71119269-71119288 None:intergenic 20.0%
!! TGGTAAAAATGTAAAAAAGT+TGG - chr4_3:71119898-71119917 Msa0660410:CDS 20.0%
!! TATTGATCAATTCTTTAGTA+TGG - chr4_3:71120366-71120385 Msa0660410:five_prime_UTR 20.0%
!!! TAAATTATATGTTTTCTTGC+AGG - chr4_3:71120431-71120450 Msa0660410:five_prime_UTR 20.0%
!!! TTCTAAAAATATCTTTCGAT+TGG + chr4_3:71121316-71121335 None:intergenic 20.0%
!! TAGAACATTAATCAATAACT+TGG - chr4_3:71121391-71121410 Msa0660410:five_prime_UTR 20.0%
! TCAAAATTACATCAACATCA+GGG + chr4_3:71118614-71118633 None:intergenic 25.0%
! TTCAAAATTACATCAACATC+AGG + chr4_3:71118615-71118634 None:intergenic 25.0%
! AAGGCAATACTATTGTATTA+TGG + chr4_3:71118969-71118988 None:intergenic 25.0%
!! ATAGCGAAGGTTTAAAATAT+CGG + chr4_3:71119126-71119145 None:intergenic 25.0%
! ACTAAATCATTCATGTAATG+GGG + chr4_3:71119268-71119287 None:intergenic 25.0%
! CTACTAAATCATTCATGTAA+TGG + chr4_3:71119270-71119289 None:intergenic 25.0%
!!! TTTTTCAACAAAAACTCTCA+AGG - chr4_3:71119429-71119448 Msa0660410:CDS 25.0%
!!! AAAACAGTAGTAGTTTTGAT+AGG - chr4_3:71119637-71119656 Msa0660410:intron 25.0%
! TACTAACATGGACATTAATT+GGG + chr4_3:71119943-71119962 None:intergenic 25.0%
!!! AACTTTTTTCACTACTAACA+TGG + chr4_3:71119955-71119974 None:intergenic 25.0%
! CAATACATAGATGATAAATG+AGG + chr4_3:71120351-71120370 None:intergenic 25.0%
! CCATCAATAAGTTTGATAAA+TGG + chr4_3:71120619-71120638 None:intergenic 25.0%
! CCATTTATCAAACTTATTGA+TGG - chr4_3:71120616-71120635 Msa0660410:five_prime_UTR 25.0%
! GGATTTCTTGATGAAAAATA+GGG + chr4_3:71120761-71120780 None:intergenic 25.0%
! TGGATTTCTTGATGAAAAAT+AGG + chr4_3:71120762-71120781 None:intergenic 25.0%
TTTGTAGCAGCTATTGTAAA+AGG - chr4_3:71118660-71118679 Msa0660410:three_prime_UTR 30.0%
!!! TTAAACCCTTTTTAAAGCCT+CGG - chr4_3:71118734-71118753 Msa0660410:three_prime_UTR 30.0%
AAATGTACTAACAACTCGAA+TGG + chr4_3:71118829-71118848 None:intergenic 30.0%
ACTACTTCAGTAACTTAGAA+AGG + chr4_3:71118914-71118933 None:intergenic 30.0%
! ATTTAGTAGCATAGCATTGA+TGG - chr4_3:71119281-71119300 Msa0660410:CDS 30.0%
! TTGTCAGCCAAATCAATTTT+TGG - chr4_3:71119467-71119486 Msa0660410:CDS 30.0%
ACAGCATCCAAAAATTGATT+TGG + chr4_3:71119477-71119496 None:intergenic 30.0%
!! ACAGGTTTTATATTCGAACA+AGG - chr4_3:71119497-71119516 Msa0660410:CDS 30.0%
TAAGCCTTCAAATTTGCATT+TGG - chr4_3:71119761-71119780 Msa0660410:CDS 30.0%
TTCACCAAATGCAAATTTGA+AGG + chr4_3:71119768-71119787 None:intergenic 30.0%
ACTAACATGGACATTAATTG+GGG + chr4_3:71119942-71119961 None:intergenic 30.0%
CTACTAACATGGACATTAAT+TGG + chr4_3:71119944-71119963 None:intergenic 30.0%
!!! TTTGAAGTTTTTCAAGCTGA+AGG - chr4_3:71119973-71119992 Msa0660410:CDS 30.0%
AAAAATCAAAGATTTGCCTG+TGG - chr4_3:71120159-71120178 Msa0660410:CDS 30.0%
TTGCAACTCATTACTAAAAG+TGG + chr4_3:71120185-71120204 None:intergenic 30.0%
! AGTAATGAGTTGCAAGTTTT+TGG - chr4_3:71120190-71120209 Msa0660410:five_prime_UTR 30.0%
ATAATGTGCATGCAAATTGT+CGG + chr4_3:71120251-71120270 None:intergenic 30.0%
ATTCTTTAGTATGGTCTGAA+AGG - chr4_3:71120375-71120394 Msa0660410:five_prime_UTR 30.0%
ATGTTATAAGGTCTTCAAGA+TGG + chr4_3:71120505-71120524 None:intergenic 30.0%
TTTGATAAATGGCTCTTCAT+AGG + chr4_3:71120608-71120627 None:intergenic 30.0%
GTATATCATCGAATGTTTCA+TGG - chr4_3:71120709-71120728 Msa0660410:intron 30.0%
TGTTGTAATGTTATTGGTGA+TGG + chr4_3:71120863-71120882 None:intergenic 30.0%
ACAAGCTGTTGTAATGTTAT+TGG + chr4_3:71120869-71120888 None:intergenic 30.0%
!! ATTACAACAGCTTGTTGAAA+GGG - chr4_3:71120874-71120893 Msa0660410:intron 30.0%
!!! GAAAAATGTTTTGGAAACAC+TGG - chr4_3:71120964-71120983 Msa0660410:intron 30.0%
AATCATAAATTTGATCACCG+TGG - chr4_3:71121057-71121076 Msa0660410:intron 30.0%
ATCATAAATTTGATCACCGT+GGG - chr4_3:71121058-71121077 Msa0660410:intron 30.0%
ACCTAAGACAAATGACTTAA+TGG + chr4_3:71121114-71121133 None:intergenic 30.0%
!! CATTCTATTTCTATCTTCCA+TGG + chr4_3:71121138-71121157 None:intergenic 30.0%
ATTATTGAGAGTGATGCATA+TGG - chr4_3:71121276-71121295 Msa0660410:intron 30.0%
TCATACATGCTTGTGATTTC+AGG + chr4_3:71118711-71118730 None:intergenic 35.0%
AATAGTATTGCCTTGCTTTG+AGG - chr4_3:71118975-71118994 Msa0660410:CDS 35.0%
!! ATGAAACTAGTTGATAGCGA+AGG + chr4_3:71119139-71119158 None:intergenic 35.0%
ACTATAACCTCTTCTTCTTC+TGG + chr4_3:71119331-71119350 None:intergenic 35.0%
AAAAACTCTCAAGGCAAAGA+TGG - chr4_3:71119438-71119457 Msa0660410:CDS 35.0%
!! TCAATTTTTGGATGCTGTAC+AGG - chr4_3:71119479-71119498 Msa0660410:CDS 35.0%
! TGTTTTACCAACAGAGAGTT+AGG + chr4_3:71119549-71119568 None:intergenic 35.0%
TAAGACATGTCATGAGAGTA+AGG - chr4_3:71119801-71119820 Msa0660410:CDS 35.0%
GCAAAATAAATTGACCGTGA+AGG - chr4_3:71120036-71120055 Msa0660410:CDS 35.0%
GAGATAAAACTTTCACACCT+TGG + chr4_3:71120063-71120082 None:intergenic 35.0%
ATCTCATAAAAAGCAGCAGA+TGG - chr4_3:71120078-71120097 Msa0660410:CDS 35.0%
! TCAAAGCACTTCATAGAGAT+GGG - chr4_3:71120104-71120123 Msa0660410:CDS 35.0%
GCACATTATGATATTCCTAG+AGG - chr4_3:71120262-71120281 Msa0660410:five_prime_UTR 35.0%
ATATAATGAGGCATACCTCT+AGG + chr4_3:71120280-71120299 None:intergenic 35.0%
AGACCTTATAACATCCTCTT+TGG - chr4_3:71120511-71120530 Msa0660410:five_prime_UTR 35.0%
GATCCAAAGAGGATGTTATA+AGG + chr4_3:71120517-71120536 None:intergenic 35.0%
TCCAATGAACAACAAGTCAA+AGG - chr4_3:71120535-71120554 Msa0660410:five_prime_UTR 35.0%
!! TCCTTTGACTTGTTGTTCAT+TGG + chr4_3:71120539-71120558 None:intergenic 35.0%
!! TCCACTTTTGATGAAGTGAA+TGG - chr4_3:71120647-71120666 Msa0660410:five_prime_UTR 35.0%
TCCATTCACTTCATCAAAAG+TGG + chr4_3:71120651-71120670 None:intergenic 35.0%
AGATGGTACTGTCAAAAAGT+TGG + chr4_3:71120682-71120701 None:intergenic 35.0%
GATGATATACTCATGCAAGA+TGG + chr4_3:71120699-71120718 None:intergenic 35.0%
AGGGTGAAAAATCACTATTC+TGG + chr4_3:71120742-71120761 None:intergenic 35.0%
! ATGTGTTGTGAGGAAAGTTT+TGG - chr4_3:71120793-71120812 Msa0660410:intron 35.0%
!! ATGTTATTGGTGATGGATGA+GGG + chr4_3:71120856-71120875 None:intergenic 35.0%
!! AATGTTATTGGTGATGGATG+AGG + chr4_3:71120857-71120876 None:intergenic 35.0%
!! CATTACAACAGCTTGTTGAA+AGG - chr4_3:71120873-71120892 Msa0660410:intron 35.0%
CAATTTCTTCTGCATCAACA+TGG + chr4_3:71120931-71120950 None:intergenic 35.0%
TGATGCAGAAGAAATTGCAA+TGG - chr4_3:71120934-71120953 Msa0660410:intron 35.0%
!!! TGTTTTGGAAACACTGGTTT+TGG - chr4_3:71120970-71120989 Msa0660410:intron 35.0%
GCCATTAAGTCATTTGTCTT+AGG - chr4_3:71121110-71121129 Msa0660410:intron 35.0%
ATCTTTCGATTGGAGAAAGA+GGG + chr4_3:71121306-71121325 None:intergenic 35.0%
TATCTTTCGATTGGAGAAAG+AGG + chr4_3:71121307-71121326 None:intergenic 35.0%
AAGCACATCTGAACCAATTC+TGG + chr4_3:71118571-71118590 None:intergenic 40.0%
!! CTAGTCCGAGGCTTTAAAAA+GGG + chr4_3:71118742-71118761 None:intergenic 40.0%
!! ACTAGTCCGAGGCTTTAAAA+AGG + chr4_3:71118743-71118762 None:intergenic 40.0%
!!! TTTTTAAAGCCTCGGACTAG+TGG - chr4_3:71118742-71118761 Msa0660410:three_prime_UTR 40.0%
AGAAAGGGGAAAGACTTTGA+AGG - chr4_3:71118872-71118891 Msa0660410:three_prime_UTR 40.0%
ATCACTAGATCCTCAAAGCA+AGG + chr4_3:71118988-71119007 None:intergenic 40.0%
! CTTTGAGGATCTAGTGATCA+AGG - chr4_3:71118990-71119009 Msa0660410:CDS 40.0%
ACATAAAACTCGACATGACG+TGG + chr4_3:71119035-71119054 None:intergenic 40.0%
ATCGGTCATAGTAACTGTTG+TGG + chr4_3:71119108-71119127 None:intergenic 40.0%
TTGGCAAGATGCAGCAAAAA+TGG - chr4_3:71119223-71119242 Msa0660410:CDS 40.0%
! TCATTCATGTAATGGGGTGA+GGG + chr4_3:71119262-71119281 None:intergenic 40.0%
! ATCATTCATGTAATGGGGTG+AGG + chr4_3:71119263-71119282 None:intergenic 40.0%
!!! GATGGAAGAATTTTGACTGC+AGG - chr4_3:71119299-71119318 Msa0660410:CDS 40.0%
! TAGTTGTAAGAGTGTACGTG+TGG - chr4_3:71119347-71119366 Msa0660410:CDS 40.0%
GAATGATCGGATAGCAGATT+TGG - chr4_3:71119371-71119390 Msa0660410:CDS 40.0%
GAACTGCTGGGAAATTTACT+TGG + chr4_3:71119863-71119882 None:intergenic 40.0%
! CATCTCTATGAAGTGCTTTG+AGG + chr4_3:71120105-71120124 None:intergenic 40.0%
! CTCAAAGCACTTCATAGAGA+TGG - chr4_3:71120103-71120122 Msa0660410:CDS 40.0%
! CAAAGCACTTCATAGAGATG+GGG - chr4_3:71120105-71120124 Msa0660410:CDS 40.0%
TCATTACTAAAAGTGGCCAC+AGG + chr4_3:71120178-71120197 None:intergenic 40.0%
! TGTTTTCTTGCAGGAACAGA+TGG - chr4_3:71120440-71120459 Msa0660410:five_prime_UTR 40.0%
! GTTTTCTTGCAGGAACAGAT+GGG - chr4_3:71120441-71120460 Msa0660410:five_prime_UTR 40.0%
GTTGTTCATTGGATCCAAAG+AGG + chr4_3:71120528-71120547 None:intergenic 40.0%
ACAACACATGCTTGGAAGTT+TGG + chr4_3:71120782-71120801 None:intergenic 40.0%
TGCAGAAGAAATTGCAATGG+AGG - chr4_3:71120937-71120956 Msa0660410:intron 40.0%
AGAAGAAATTGCAATGGAGG+TGG - chr4_3:71120940-71120959 Msa0660410:intron 40.0%
! GGAGGTGGAGAAAAATGTTT+TGG - chr4_3:71120955-71120974 Msa0660410:intron 40.0%
CAAATGACTTAATGGCCATG+CGG + chr4_3:71121106-71121125 None:intergenic 40.0%
GTCATTTGTCTTAGGTTCCA+TGG - chr4_3:71121118-71121137 Msa0660410:intron 40.0%
GGCAATGGGAAATCCAGAAT+TGG - chr4_3:71118555-71118574 Msa0660410:three_prime_UTR 45.0%
TTACCAAAACCACTAGTCCG+AGG + chr4_3:71118754-71118773 None:intergenic 45.0%
GTATGCTCCAGAAGAAGAAG+AGG - chr4_3:71119321-71119340 Msa0660410:CDS 45.0%
GTGTACGTGTGGAGAATGAT+CGG - chr4_3:71119358-71119377 Msa0660410:CDS 45.0%
GCAAGATCCTAACTCTCTGT+TGG - chr4_3:71119539-71119558 Msa0660410:intron 45.0%
AGGAGAAAAGAACAGCAGTG+CGG - chr4_3:71119821-71119840 Msa0660410:CDS 45.0%
TAAATTTCCCAGCAGTTCGC+AGG - chr4_3:71119865-71119884 Msa0660410:CDS 45.0%
AAATTGACCGTGAAGGACCA+AGG - chr4_3:71120043-71120062 Msa0660410:CDS 45.0%
TTTCACACCTTGGTCCTTCA+CGG + chr4_3:71120053-71120072 None:intergenic 45.0%
ACTTCCAAGCATGTGTTGTG+AGG - chr4_3:71120783-71120802 Msa0660410:intron 45.0%
CTTTCCTCACAACACATGCT+TGG + chr4_3:71120790-71120809 None:intergenic 45.0%
!! ACAGCTTGTTGAAAGGGACT+TGG - chr4_3:71120880-71120899 Msa0660410:intron 45.0%
AGTCATCCATGATTCACGTC+TGG + chr4_3:71120906-71120925 None:intergenic 45.0%
!!! AAGCCTCGGACTAGTGGTTT+TGG - chr4_3:71118748-71118767 Msa0660410:three_prime_UTR 50.0%
! ATGTAATGGGGTGAGGGAGT+GGG + chr4_3:71119256-71119275 None:intergenic 50.0%
CACTTTGCTGACACTAGCTC+TGG - chr4_3:71119723-71119742 Msa0660410:CDS 50.0%
GGAGAAAAGAACAGCAGTGC+GGG - chr4_3:71119822-71119841 Msa0660410:CDS 50.0%
AGTTCGCAGGACTTGGAAGA+TGG - chr4_3:71119878-71119897 Msa0660410:CDS 50.0%
ACTTGGCCAGACGTGAATCA+TGG - chr4_3:71120897-71120916 Msa0660410:intron 50.0%
GTGATCAAGGTCTGCGACCA+CGG - chr4_3:71119003-71119022 Msa0660410:CDS 55.0%
ACATGACGTGGACCAAACCG+TGG + chr4_3:71119023-71119042 None:intergenic 55.0%
CCTCAATCGTGGTCGTGTTG+CGG + chr4_3:71119066-71119085 None:intergenic 55.0%
GTGGTCAAATGAGCCCGATG+CGG + chr4_3:71119089-71119108 None:intergenic 55.0%
! CATGTAATGGGGTGAGGGAG+TGG + chr4_3:71119257-71119276 None:intergenic 55.0%
GCAGTGCGGGACAACTGATT+CGG - chr4_3:71119835-71119854 Msa0660410:CDS 55.0%
TCCAAGTCCTGCGAACTGCT+GGG + chr4_3:71119875-71119894 None:intergenic 55.0%
TTCCAAGTCCTGCGAACTGC+TGG + chr4_3:71119876-71119895 None:intergenic 55.0%
TCACCGTGGGTAGTTGCTCA+TGG - chr4_3:71121071-71121090 Msa0660410:intron 55.0%
CCACCATGAGCAACTACCCA+CGG + chr4_3:71121077-71121096 None:intergenic 55.0%
TGGGTAGTTGCTCATGGTGG+TGG - chr4_3:71121077-71121096 Msa0660410:intron 55.0%
CAAGGTCTGCGACCACGGTT+TGG - chr4_3:71119008-71119027 Msa0660410:CDS 60.0%
CCGCAACACGACCACGATTG+AGG - chr4_3:71119063-71119082 Msa0660410:CDS 60.0%
GACCACGATTGAGGCCGCAT+CGG - chr4_3:71119072-71119091 Msa0660410:CDS 60.0%
ACCACGATTGAGGCCGCATC+GGG - chr4_3:71119073-71119092 Msa0660410:CDS 60.0%
TCCCAGCAGTTCGCAGGACT+TGG - chr4_3:71119871-71119890 Msa0660410:CDS 60.0%
CCGTGGGTAGTTGCTCATGG+TGG - chr4_3:71121074-71121093 Msa0660410:intron 60.0%
!! TCATGGTGGTGGAGACCGCA+TGG - chr4_3:71121088-71121107 Msa0660410:intron 60.0%
GCCCGATGCGGCCTCAATCG+TGG + chr4_3:71119077-71119096 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 71118555 71121438 71118555 ID=Msa0660410;Name=Msa0660410
chr4_3 mRNA 71118555 71121438 71118555 ID=Msa0660410-mRNA-1;Parent=Msa0660410;Name=Msa0660410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=560|1|1|1|1|0.66|3|417|346
chr4_3 exon 71118555 71119540 71118555 ID=Msa0660410-mRNA-1:exon:21282;Parent=Msa0660410-mRNA-1
chr4_3 exon 71119710 71120672 71119710 ID=Msa0660410-mRNA-1:exon:21281;Parent=Msa0660410-mRNA-1
chr4_3 exon 71121370 71121438 71121370 ID=Msa0660410-mRNA-1:exon:21280;Parent=Msa0660410-mRNA-1
chr4_3 five_prime_UTR 71121370 71121438 71121370 ID=Msa0660410-mRNA-1:five_prime_utr;Parent=Msa0660410-mRNA-1
chr4_3 five_prime_UTR 71120182 71120672 71120182 ID=Msa0660410-mRNA-1:five_prime_utr;Parent=Msa0660410-mRNA-1
chr4_3 CDS 71119710 71120181 71119710 ID=Msa0660410-mRNA-1:cds;Parent=Msa0660410-mRNA-1
chr4_3 CDS 71118972 71119540 71118972 ID=Msa0660410-mRNA-1:cds;Parent=Msa0660410-mRNA-1
chr4_3 three_prime_UTR 71118555 71118971 71118555 ID=Msa0660410-mRNA-1:three_prime_utr;Parent=Msa0660410-mRNA-1
Gene Sequence

>Msa0660410

ATGAGAGTAAGGAGAAAAGAACAGCAGTGCGGGACAACTGATTCGGCGCCAAGTAAATTTCCCAGCAGTTCGCAGGACTTGGAAGATGGTAAAAATGTAAAAAAGTTGGACACTTCTGAAAGAAATTCCCCAATTAATGTCCATGTTAGTAGTGAAAAAAGTTTGAAGTTTTTCAAGCTGAAGGATTCTGAGTCAAGTATGAGACAAGAAGAAGTTGCTTCTGAGCAAAATAAATTGACCGTGAAGGACCAAGGTGTGAAAGTTTTATCTCATAAAAAGCAGCAGATGGTCCTCAAAGCACTTCATAGAGATGGGGAAAGTTGCTCTTATAGTAGTTCTTCAGCTCAAAAAATCAAAGATTTGCCTGTGGCCACTTTTAGTAATGAGTTGCAAGTTTTTGGTGCTGCAGATATTAGTGTCAATAAGAGTCTTTCTGCCGACAATTTGCATGCACATTATGATATTCCTAGAGGAACAGATGGGTCACTAGTACAAGTTGATTACGATAGATTTGAAGAGAACCATCTTGAAGACCTTATAACATCCTCTTTGGATCCAATGAACAACAAGTCAAAGGATATCATAAGTGAAGTTCTGCAGACTTTCAGCTTGAAATGTGATGAACCTATGAAGAGCCATTTATCAAACTTATTGATGGATTCTTCATCCACTTTTGATGAAGTGAATGGATTGACTGACCAACTTTTTGACAGTACCATCTTGCATGAGTATATCATCGAATGTTTCATGGAGTTATACCAGAATAGTGATTTTTCACCCTATTTTTCATCAAGAAATCCAAACTTCCAAGCATGTGTTGTGAGGAAAGTTTTGGTTAGACAGATTAATGAACTTGTTAAACTTCACTTTTTCCCTCATCCATCACCAATAACATTACAACAGCTTGTTGAAAGGGACTTGGCCAGACGTGAATCATGGATGACTATCCATGTTGATGCAGAAGAAATTGCAATGGAGGTGGAGAAAAATGTTTTGGAAACACTGGTTTTGGAAATCGTGTCTGAGATGACTATATCATAG

Protein sequence

>Msa0660410

MRVRRKEQQCGTTDSAPSKFPSSSQDLEDGKNVKKLDTSERNSPINVHVSSEKSLKFFKLKDSESSMRQEEVASEQNKLTVKDQGVKVLSHKKQQMVLKALHRDGESCSYSSSSAQKIKDLPVATFSNELQVFGAADISVNKSLSADNLHAHYDIPRGTDGSLVQVDYDRFEENHLEDLITSSLDPMNNKSKDIISEVLQTFSLKCDEPMKSHLSNLLMDSSSTFDEVNGLTDQLFDSTILHEYIIECFMELYQNSDFSPYFSSRNPNFQACVVRKVLVRQINELVKLHFFPHPSPITLQQLVERDLARRESWMTIHVDAEEIAMEVEKNVLETLVLEIVSEMTIS*