AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1357170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357170 MtrunA17_Chr4g0076721 94.783 230 10 2 1 230 107 334 6.60e-161 448
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357170 AT2G02410.5 73.128 227 53 4 4 230 3 221 2.41e-116 331
Msa1357170 AT2G02410.13 73.128 227 53 4 4 230 3 221 2.41e-116 331
Msa1357170 AT2G02410.2 73.128 227 53 4 4 230 24 242 3.69e-116 332
Msa1357170 AT2G02410.3 73.128 227 53 4 4 230 41 259 1.14e-115 331
Msa1357170 AT2G02410.1 73.128 227 53 4 4 230 89 307 3.39e-115 332
Msa1357170 AT2G02410.6 64.706 255 54 5 4 230 89 335 3.87e-109 317
Msa1357170 AT2G02410.12 71.341 164 39 4 4 167 41 196 1.46e-76 230
Msa1357170 AT2G02410.11 71.341 164 39 4 4 167 89 244 2.98e-76 231
Msa1357170 AT2G02410.8 71.341 164 39 4 4 167 89 244 2.98e-76 231
Msa1357170 AT2G02410.9 67.647 136 36 4 4 139 41 168 7.23e-56 177
Msa1357170 AT2G02410.7 67.153 137 37 4 4 140 89 217 1.05e-55 178
Msa1357170 AT2G02410.10 67.153 137 37 4 4 140 89 217 1.05e-55 178
Msa1357170 AT2G02410.4 55.152 165 38 5 4 140 89 245 1.30e-49 163

Find 58 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTAGGTTTCAGCTTTAA+AGG 0.156682 tig0015996:-10343 Msa1357170:intron
AGGATGGTTGCCCCAAAGTC+TGG 0.335763 tig0015996:-10320 Msa1357170:CDS
GGAAGAATATTCCTTGTGAT+TGG 0.354869 tig0015996:+10523 Msa1357170:intergenic
AGTTATCAGCCATGATGTTA+AGG 0.355990 tig0015996:+5474 Msa1357170:intergenic
ACACAAATCAGCTGGGTCTT+GGG 0.361413 tig0015996:-10770 Msa1357170:CDS
TAACCATCAACAAGCAAAAC+AGG 0.364806 tig0015996:+10701 Msa1357170:intergenic
GTTACAATGTCTGTGGATAT+TGG 0.373030 tig0015996:-10701 Msa1357170:CDS
TTTACGTGTTTACAATATCT+TGG 0.376596 tig0015996:+5389 Msa1357170:intergenic
GAAGAATATTCCTTGTGATT+GGG 0.378710 tig0015996:+10524 Msa1357170:intergenic
GTTATCAGCCATGATGTTAA+GGG 0.389151 tig0015996:+5475 Msa1357170:intergenic
TAAGTTCGTCAATAAGCTTC+TGG 0.389972 tig0015996:+10612 Msa1357170:intergenic
GTATTTGATGCCATGATGTC+TGG 0.393030 tig0015996:-10570 Msa1357170:CDS
CGGTAACTAGTTGAAGGTCT+TGG 0.402341 tig0015996:+10854 Msa1357170:intergenic
AGAAGTGACGACCCAGACTT+TGG 0.415939 tig0015996:+10308 Msa1357170:intergenic
GAAGTGACGACCCAGACTTT+GGG 0.421042 tig0015996:+10309 Msa1357170:intergenic
TACACAAATCAGCTGGGTCT+TGG 0.424310 tig0015996:-10771 Msa1357170:CDS
AACTTTCGAGTTAATAATGA+AGG 0.436263 tig0015996:+5502 Msa1357170:intergenic
GTGTAGTAGAGGGAGGTTGT+TGG 0.441657 tig0015996:+10770 Msa1357170:intergenic
CTGATGCATCTGCTGATACA+TGG 0.474850 tig0015996:-10497 Msa1357170:CDS
AAAGAAGAAGGCCGAGAAAG+AGG 0.474951 tig0015996:-10847 Msa1357170:CDS
AAGAATATTCCTTGTGATTG+GGG 0.489548 tig0015996:+10525 Msa1357170:intergenic
CCTCTACTACACAAATCAGC+TGG 0.492718 tig0015996:-10778 Msa1357170:CDS
CACAAATCAGCTGGGTCTTG+GGG 0.493462 tig0015996:-10769 Msa1357170:CDS
ATCCGCAAGATCCTCTTTCT+CGG 0.497073 tig0015996:+10817 Msa1357170:intergenic
GATCACGATAGAGGTCAGTT+TGG 0.509125 tig0015996:+10792 Msa1357170:intergenic
GTAGATCAAGGCATCACAAA+AGG 0.512172 tig0015996:-9719 Msa1357170:intron
GTCAAACTAAATTCTCTGAC+TGG 0.514100 tig0015996:+5587 Msa1357170:intergenic
CAATCTACCTTGAAAAGAAG+TGG 0.518431 tig0015996:+5708 Msa1357170:intergenic
AATCACAAGGAATATTCTTC+CGG 0.528595 tig0015996:-10540 Msa1357170:CDS
TGTTTGGAGTAGCAAGGCAT+TGG 0.530261 tig0015996:-10014 Msa1357170:CDS
CCAGCTGATTTGTGTAGTAG+AGG 0.530779 tig0015996:+10759 Msa1357170:intergenic
TGAGAAAACAATGTCGATGC+CGG 0.535047 tig0015996:+10502 Msa1357170:intergenic
GTTTCAGCTTTAAAGGAGGA+TGG 0.538423 tig0015996:-10336 Msa1357170:CDS
CACCTTTAGTATGCTTAGAG+AGG 0.540405 tig0015996:-10607 Msa1357170:CDS
CAATCTTGATGCAGAAGTAG+TGG 0.544356 tig0015996:-5677 Msa1357170:CDS
AGGTTGTTGGATCACGATAG+AGG 0.546658 tig0015996:+10783 Msa1357170:intergenic
GGATGGTTGCCCCAAAGTCT+GGG 0.556380 tig0015996:-10319 Msa1357170:CDS
GACCTCTCTAAGCATACTAA+AGG 0.559341 tig0015996:+10586 Msa1357170:intergenic
GGCCTTTGTTTGGAGTAGCA+AGG 0.562906 tig0015996:-10020 Msa1357170:CDS
ATTGGGGAATCCAGACATCA+TGG 0.573403 tig0015996:+10541 Msa1357170:intergenic
CTCTACTACACAAATCAGCT+GGG 0.575051 tig0015996:-10777 Msa1357170:CDS
AGTTGAAACCCTTAACATCA+TGG 0.578393 tig0015996:-5483 Msa1357170:three_prime_UTR
GGCCGAGAAAGAGGATCTTG+CGG 0.579972 tig0015996:-10838 Msa1357170:CDS
CAGCTGATTTGTGTAGTAGA+GGG 0.582819 tig0015996:+10760 Msa1357170:intergenic
AAGAGATGCTTCAAGAGCAA+AGG 0.590832 tig0015996:-9690 Msa1357170:intron
AAGTGACGACCCAGACTTTG+GGG 0.593977 tig0015996:+10310 Msa1357170:intergenic
GAACTAATTGAATATGACAC+TGG 0.598924 tig0015996:-5427 Msa1357170:three_prime_UTR
ACAAATCAGCTGGGTCTTGG+GGG 0.604764 tig0015996:-10768 Msa1357170:CDS
TGTCAACAACAAGCAGCACA+TGG 0.612468 tig0015996:-10279 Msa1357170:CDS
GTCTGGATTCCCCAATCACA+AGG 0.613410 tig0015996:-10553 Msa1357170:CDS
CTGATTTGTGTAGTAGAGGG+AGG 0.619033 tig0015996:+10763 Msa1357170:intergenic
GTTGATGGTTACAATGTCTG+TGG 0.627615 tig0015996:-10708 Msa1357170:CDS
TTAGGTTTCAGCTTTAAAGG+AGG 0.636930 tig0015996:-10340 Msa1357170:intron
GATCAAGGCATCACAAAAGG+AGG 0.644648 tig0015996:-9716 Msa1357170:CDS
AACCATCAACAAGCAAAACA+GGG 0.648456 tig0015996:+10702 Msa1357170:intergenic
TGCCTTGCTACTCCAAACAA+AGG 0.657836 tig0015996:+10018 Msa1357170:intergenic
TGGATGCTCTGAAGAACCTG+AGG 0.667302 tig0015996:-5657 Msa1357170:CDS
TAGCAAGGCATTGGTAACCG+AGG 0.688830 tig0015996:-10005 Msa1357170:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTATATACAAATAGTT+GGG + tig0015996:7048-7067 Msa1357170:intergenic 15.0%
!! ATATGTTATATACAAATAGT+TGG + tig0015996:7049-7068 Msa1357170:intergenic 15.0%
!! ACTATTTGTATATAACATAT+TGG - tig0015996:7049-7068 Msa1357170:intron 15.0%
!! AACAAAGAAGTTAATAAATT+AGG + tig0015996:7487-7506 Msa1357170:intergenic 15.0%
!! ATATAAAGAATGACAAAAAT+AGG + tig0015996:8342-8361 Msa1357170:intergenic 15.0%
!!! TTTTTTTATCACTGTAATTA+AGG + tig0015996:8888-8907 Msa1357170:intergenic 15.0%
!! AATTAGAAGATAAATGTATT+AGG - tig0015996:9217-9236 Msa1357170:intron 15.0%
!!! TTTCACAAAAAAAAATGTTT+TGG - tig0015996:9394-9413 Msa1357170:intron 15.0%
!!! AAAAAATGTTTTGGATATAT+TGG - tig0015996:9403-9422 Msa1357170:intron 15.0%
!!! AAACAACTTTTTTTATTACA+GGG - tig0015996:10280-10299 Msa1357170:CDS 15.0%
!!! TTTTATTTTATTTTGCATGT+CGG - tig0015996:10598-10617 Msa1357170:CDS 15.0%
!! ATGATTGGAAAAGAATTATA+AGG + tig0015996:5924-5943 Msa1357170:intergenic 20.0%
!! CATTTGAAAAAAAGAAGAAA+AGG + tig0015996:6019-6038 Msa1357170:intergenic 20.0%
!!! TTGAATCTCAAATTTTTGAA+TGG - tig0015996:6219-6238 Msa1357170:intron 20.0%
!! AACAAAACGAATATATCTAA+TGG + tig0015996:6499-6518 Msa1357170:intergenic 20.0%
!! AAAATCACTATAGATAAAAC+TGG + tig0015996:6624-6643 Msa1357170:intergenic 20.0%
!!! TTCTATTTTCCTTTTCATTA+TGG + tig0015996:6745-6764 Msa1357170:intergenic 20.0%
!!! TATTGGTAATAATCTAACTT+TGG - tig0015996:7066-7085 Msa1357170:intron 20.0%
!! TTTAATGACATATATGTTGT+TGG + tig0015996:7236-7255 Msa1357170:intergenic 20.0%
!! CTCAAGAAAATCAAATTATA+AGG + tig0015996:7283-7302 Msa1357170:intergenic 20.0%
!! GACTAAATTTGAATTTGTAA+AGG - tig0015996:7760-7779 Msa1357170:intron 20.0%
!! TAAATTTGAATTTGTAAAGG+TGG - tig0015996:7763-7782 Msa1357170:intron 20.0%
!!! TATTTTAGCTCTTTAATCTA+AGG - tig0015996:8281-8300 Msa1357170:intron 20.0%
!! TTAATGTATTTATGGTATGA+AGG - tig0015996:8793-8812 Msa1357170:intron 20.0%
!!! GAGCTTTTAAATGATTTATT+TGG + tig0015996:8832-8851 Msa1357170:intergenic 20.0%
!! GTGAATGTTATAGTTATTAT+AGG - tig0015996:9248-9267 Msa1357170:intron 20.0%
!! TTATTATAGGTAATGATATG+AGG - tig0015996:9261-9280 Msa1357170:intron 20.0%
!! TATTATAGGTAATGATATGA+GGG - tig0015996:9262-9281 Msa1357170:intron 20.0%
!!! TCATTTTTAAACCATAAACT+TGG - tig0015996:9315-9334 Msa1357170:intron 20.0%
!!! CATTTTTAAACCATAAACTT+GGG - tig0015996:9316-9335 Msa1357170:intron 20.0%
!!! ATTTTTAAACCATAAACTTG+GGG - tig0015996:9317-9336 Msa1357170:intron 20.0%
!! AAACAAAACTTAGAAGAATT+AGG + tig0015996:9957-9976 Msa1357170:intergenic 20.0%
!!! AATTCTTCTAAGTTTTGTTT+TGG - tig0015996:9957-9976 Msa1357170:intron 20.0%
!!! TTTTATAGATGTCTTATAGT+TGG - tig0015996:10119-10138 Msa1357170:intron 20.0%
!! TTTATAGATGTCTTATAGTT+GGG - tig0015996:10120-10139 Msa1357170:intron 20.0%
!! CAAGATTTACAACTTAATAT+TGG + tig0015996:10165-10184 Msa1357170:intergenic 20.0%
!!! ATATTAAGTTGTAAATCTTG+TGG - tig0015996:10165-10184 Msa1357170:intron 20.0%
!!! TATTAAGTTGTAAATCTTGT+GGG - tig0015996:10166-10185 Msa1357170:intron 20.0%
!!! CAAACAACTTTTTTTATTAC+AGG - tig0015996:10279-10298 Msa1357170:CDS 20.0%
!!! ACATGTGAATATGTTTTAAT+AGG - tig0015996:10561-10580 Msa1357170:CDS 20.0%
!! CTCAAAAAACATTTTCTCAA+TGG - tig0015996:5474-5493 Msa1357170:three_prime_UTR 25.0%
! TATTCTTTACTCCTCAATTT+AGG - tig0015996:5769-5788 Msa1357170:intron 25.0%
!! AATTTAGGTTTCAGCTTTAA+AGG - tig0015996:5784-5803 Msa1357170:intron 25.0%
!!! TTCTTCTTTTTTTCAAATGC+TGG - tig0015996:6020-6039 Msa1357170:intron 25.0%
! TGTAATTGAGATTTATACTC+TGG - tig0015996:6072-6091 Msa1357170:intron 25.0%
!! TCCTTCAATGATATTTTACA+TGG - tig0015996:6361-6380 Msa1357170:intron 25.0%
! ACCATGTAAAATATCATTGA+AGG + tig0015996:6365-6384 Msa1357170:intergenic 25.0%
!! TTTTATGATTTTTCGCTGTA+TGG - tig0015996:6526-6545 Msa1357170:intron 25.0%
! CTTAATGAGTATCTAACTAT+GGG - tig0015996:6663-6682 Msa1357170:intron 25.0%
! TTAATGAGTATCTAACTATG+GGG - tig0015996:6664-6683 Msa1357170:intron 25.0%
! TTAGAAACTTTCTCCTATTA+AGG - tig0015996:6771-6790 Msa1357170:intron 25.0%
! TAGAAACTTTCTCCTATTAA+GGG - tig0015996:6772-6791 Msa1357170:intron 25.0%
! CTACATAAATACAGAAACTA+AGG + tig0015996:6843-6862 Msa1357170:intergenic 25.0%
!! TAAATTTTCCCATCTCAAAA+TGG - tig0015996:6919-6938 Msa1357170:intron 25.0%
! AATCAAATTATAAGGACACA+TGG + tig0015996:7275-7294 Msa1357170:intergenic 25.0%
!! TAAAAATCTGGAACAGTTAA+AGG + tig0015996:7316-7335 Msa1357170:intergenic 25.0%
! GGAAATCAAAAGTAAAAATC+TGG + tig0015996:7328-7347 Msa1357170:intergenic 25.0%
! TTAATAAATTAGGATGACCA+AGG + tig0015996:7477-7496 Msa1357170:intergenic 25.0%
!! CTATTTTGTAGTTCTTATTC+AGG + tig0015996:8085-8104 Msa1357170:intergenic 25.0%
!! TAAAAAGTATATTGCTGGAT+TGG + tig0015996:8234-8253 Msa1357170:intergenic 25.0%
!! ACATCTAAAAAGTATATTGC+TGG + tig0015996:8239-8258 Msa1357170:intergenic 25.0%
! AGGTTTCTATTAATTGAAGA+AGG - tig0015996:8460-8479 Msa1357170:intron 25.0%
!!! TCCAAAAACTATTTTTCTTG+GGG + tig0015996:8720-8739 Msa1357170:intergenic 25.0%
!!! CTCCAAAAACTATTTTTCTT+GGG + tig0015996:8721-8740 Msa1357170:intergenic 25.0%
! GTTGGATGTTAATGTATTTA+TGG - tig0015996:8785-8804 Msa1357170:intron 25.0%
! AATTTCACAAACAAAACTCA+AGG + tig0015996:9123-9142 Msa1357170:intergenic 25.0%
!!! AGTTTTGTTGTGCAATAATT+TGG - tig0015996:9144-9163 Msa1357170:intron 25.0%
! ATCTCTATGTATTCAACATT+GGG - tig0015996:9586-9605 Msa1357170:intron 25.0%
! GAAATAGATCACACATTAAT+AGG + tig0015996:9715-9734 Msa1357170:intergenic 25.0%
! TTAATGTGTGATCTATTTCA+AGG - tig0015996:9716-9735 Msa1357170:CDS 25.0%
!!! TCAAGGTATTGTACATTAAT+TGG - tig0015996:9733-9752 Msa1357170:intron 25.0%
!!! AGAAGCATAATGTAGTTTTT+TGG - tig0015996:9782-9801 Msa1357170:intron 25.0%
! TGAATATTATGTTATGGCTA+TGG - tig0015996:9819-9838 Msa1357170:intron 25.0%
! AGTAACAGTTTCATTCATAT+AGG + tig0015996:9856-9875 Msa1357170:intergenic 25.0%
! TTATAGATGTCTTATAGTTG+GGG - tig0015996:10121-10140 Msa1357170:intron 25.0%
! TCATTTCATGTTATTGAGTT+AGG + tig0015996:10239-10258 Msa1357170:intergenic 25.0%
! AACTCAATAACATGAAATGA+TGG - tig0015996:10239-10258 Msa1357170:intron 25.0%
! ACTCAATAACATGAAATGAT+GGG - tig0015996:10240-10259 Msa1357170:intron 25.0%
!!! AACTTTCGAGTTAATAATGA+AGG + tig0015996:10628-10647 Msa1357170:intergenic 25.0%
! TTTACGTGTTTACAATATCT+TGG + tig0015996:10741-10760 Msa1357170:intergenic 25.0%
! TTTTTACGGTAACTAGTTGA+AGG + tig0015996:5282-5301 None:intergenic 30.0%
TAGTTACCGTAAAAAGAAGA+AGG - tig0015996:5287-5306 Msa1357170:three_prime_UTR 30.0%
AAGAATATTCCTTGTGATTG+GGG + tig0015996:5605-5624 Msa1357170:intergenic 30.0%
GAAGAATATTCCTTGTGATT+GGG + tig0015996:5606-5625 Msa1357170:intergenic 30.0%
AATCACAAGGAATATTCTTC+CGG - tig0015996:5606-5625 Msa1357170:three_prime_UTR 30.0%
! TGATACATGGATTGAAAAAG+AGG - tig0015996:5662-5681 Msa1357170:CDS 30.0%
TAAAGCTGAAACCTAAATTG+AGG + tig0015996:5783-5802 Msa1357170:intergenic 30.0%
GAGAGAACAATAGTTATGAT+TGG + tig0015996:5939-5958 Msa1357170:intergenic 30.0%
!! TTAGTTTGCACAGATTAACA+AGG + tig0015996:5961-5980 Msa1357170:intergenic 30.0%
TTGTTAATCTGTGCAAACTA+AGG - tig0015996:5960-5979 Msa1357170:intron 30.0%
! TTTATACTCTGGATGTTTTC+AGG - tig0015996:6083-6102 Msa1357170:intron 30.0%
! TTATACTCTGGATGTTTTCA+GGG - tig0015996:6084-6103 Msa1357170:intron 30.0%
! GTCATATCAATGTTTTACCT+CGG + tig0015996:6142-6161 Msa1357170:intergenic 30.0%
CAACAAAAACAATTGAAGAC+AGG + tig0015996:6194-6213 Msa1357170:intergenic 30.0%
TGTCACACTAATCAAAGATT+TGG + tig0015996:6312-6331 Msa1357170:intergenic 30.0%
GTGACAAATTGACAATCATT+TGG - tig0015996:6326-6345 Msa1357170:intron 30.0%
!! GGTCTTGTTTATTACTTGTT+TGG - tig0015996:6382-6401 Msa1357170:intron 30.0%
CCATAGTTAGATACTCATTA+AGG + tig0015996:6665-6684 Msa1357170:intergenic 30.0%
CCTTAATGAGTATCTAACTA+TGG - tig0015996:6662-6681 Msa1357170:intron 30.0%
CTTGCATTGTAATTCTTGAT+GGG - tig0015996:6700-6719 Msa1357170:intron 30.0%
AAAGTTCTGCCATAATGAAA+AGG - tig0015996:6733-6752 Msa1357170:intron 30.0%
AGATTATATCCTCCCTTAAT+AGG + tig0015996:6787-6806 Msa1357170:intergenic 30.0%
ATACAAATAGTTGGGATTGT+CGG + tig0015996:7040-7059 Msa1357170:intergenic 30.0%
AGAGAAAAAAGACAAGTGAT+TGG + tig0015996:7130-7149 Msa1357170:intergenic 30.0%
TACTTTGTGATACTTTCTGA+TGG - tig0015996:7173-7192 Msa1357170:intron 30.0%
!!! TTTTGATTTCCTTACTATCC+TGG - tig0015996:7337-7356 Msa1357170:intron 30.0%
TAGTGAATGTTAAAGACCAT+TGG - tig0015996:7361-7380 Msa1357170:intron 30.0%
TGAATTTGGCTAGAAAATGA+AGG + tig0015996:7569-7588 Msa1357170:intergenic 30.0%
TATCGTTCATTCTGATATGT+AGG - tig0015996:7613-7632 Msa1357170:intron 30.0%
ATCGTTCATTCTGATATGTA+GGG - tig0015996:7614-7633 Msa1357170:intron 30.0%
TCAGTCATTAAGACGAATAA+GGG + tig0015996:7681-7700 Msa1357170:intergenic 30.0%
ATCAGTCATTAAGACGAATA+AGG + tig0015996:7682-7701 Msa1357170:intergenic 30.0%
! TTGTGATTTTCCATTGTTGT+TGG + tig0015996:7822-7841 Msa1357170:intergenic 30.0%
!! CTCGTAGCTTGTTTAATATT+AGG + tig0015996:7845-7864 Msa1357170:intergenic 30.0%
!! TGAACCTAGTATACTTTTTG+AGG - tig0015996:8305-8324 Msa1357170:intron 30.0%
! AAAGCCTCAAAAAGTATACT+AGG + tig0015996:8312-8331 Msa1357170:intergenic 30.0%
AGAATGACAAAAATAGGAGT+AGG + tig0015996:8336-8355 Msa1357170:intergenic 30.0%
ATCAACAGTATGAAAATCGT+TGG + tig0015996:8517-8536 Msa1357170:intergenic 30.0%
! TCCCCAAGAAAAATAGTTTT+TGG - tig0015996:8716-8735 Msa1357170:intron 30.0%
!! CCTCCAAAAACTATTTTTCT+TGG + tig0015996:8722-8741 Msa1357170:intergenic 30.0%
!! CCAAGAAAAATAGTTTTTGG+AGG - tig0015996:8719-8738 Msa1357170:intron 30.0%
! GGTATGAAGGTTGATTTATA+AGG - tig0015996:8806-8825 Msa1357170:intron 30.0%
!! AAAAGGCACTCTCAAATATA+TGG - tig0015996:8862-8881 Msa1357170:intron 30.0%
AGTCAAATTGAAGACATCTA+GGG + tig0015996:8919-8938 Msa1357170:intergenic 30.0%
AAGTCAAATTGAAGACATCT+AGG + tig0015996:8920-8939 Msa1357170:intergenic 30.0%
! ATGTCTTCAATTTGACTTCT+TGG - tig0015996:8922-8941 Msa1357170:intron 30.0%
! TTCAATTTGACTTCTTGGTA+TGG - tig0015996:8927-8946 Msa1357170:intron 30.0%
GTGAAGAAGAGACATATATA+TGG - tig0015996:9013-9032 Msa1357170:intron 30.0%
ATATATGGAGAAACCACTAA+AGG - tig0015996:9028-9047 Msa1357170:intron 30.0%
AGCATAATCAATTGAAATCC+TGG - tig0015996:9434-9453 Msa1357170:intron 30.0%
TGTTAACAGAAAAGGGAAAT+TGG - tig0015996:9468-9487 Msa1357170:intron 30.0%
! CTTGTGTAATTATTCTGAGA+TGG + tig0015996:9526-9545 Msa1357170:intergenic 30.0%
CAATGTTGAATACATAGAGA+TGG + tig0015996:9587-9606 Msa1357170:intergenic 30.0%
CATCTCTATGTATTCAACAT+TGG - tig0015996:9585-9604 Msa1357170:intron 30.0%
TCTCTATGTATTCAACATTG+GGG - tig0015996:9587-9606 Msa1357170:intron 30.0%
!! TATGATGCATAAGAGTACTT+TGG - tig0015996:9619-9638 Msa1357170:intron 30.0%
!! ATAAGAGTACTTTGGATCAA+GGG - tig0015996:9627-9646 Msa1357170:intron 30.0%
!!! GCATAATGTAGTTTTTTGGT+CGG - tig0015996:9786-9805 Msa1357170:intron 30.0%
!!! CATAATGTAGTTTTTTGGTC+GGG - tig0015996:9787-9806 Msa1357170:intron 30.0%
! GCAGGTTGAATATTATGTTA+TGG - tig0015996:9813-9832 Msa1357170:intron 30.0%
! AGTTCTAACTTAGAAGACTT+AGG + tig0015996:9992-10011 Msa1357170:intergenic 30.0%
TATCACAAAAAATGTGCTCA+TGG - tig0015996:10037-10056 Msa1357170:intron 30.0%
ATCACAAAAAATGTGCTCAT+GGG - tig0015996:10038-10057 Msa1357170:intron 30.0%
ACATTAGTAAGCAAACCAAT+CGG + tig0015996:10385-10404 Msa1357170:intergenic 30.0%
GAACTAATTGAATATGACAC+TGG - tig0015996:10700-10719 Msa1357170:CDS 30.0%
! TTTCTATAGATTTTTGCCTG+TGG - tig0015996:10805-10824 Msa1357170:CDS 30.0%
! TTCTATAGATTTTTGCCTGT+GGG - tig0015996:10806-10825 Msa1357170:CDS 30.0%
AACCATCAACAAGCAAAACA+GGG + tig0015996:5428-5447 Msa1357170:intergenic 35.0%
TAACCATCAACAAGCAAAAC+AGG + tig0015996:5429-5448 Msa1357170:intergenic 35.0%
GTTACAATGTCTGTGGATAT+TGG - tig0015996:5445-5464 Msa1357170:three_prime_UTR 35.0%
TAAGTTCGTCAATAAGCTTC+TGG + tig0015996:5518-5537 Msa1357170:intergenic 35.0%
GGAAGAATATTCCTTGTGAT+TGG + tig0015996:5607-5626 Msa1357170:intergenic 35.0%
!! TTAGGTTTCAGCTTTAAAGG+AGG - tig0015996:5787-5806 Msa1357170:intron 35.0%
! TATACTCTGGATGTTTTCAG+GGG - tig0015996:6085-6104 Msa1357170:intron 35.0%
CAAAAACAATTGAAGACAGG+CGG + tig0015996:6191-6210 Msa1357170:intergenic 35.0%
ACATGACCATACAGTTAAAG+AGG - tig0015996:6277-6296 Msa1357170:intron 35.0%
TCTGAACCTCTTTAACTGTA+TGG + tig0015996:6286-6305 Msa1357170:intergenic 35.0%
CTTGTTTGGATAGTAGATCA+AGG - tig0015996:6396-6415 Msa1357170:intron 35.0%
GCTTGCATTGTAATTCTTGA+TGG - tig0015996:6699-6718 Msa1357170:intron 35.0%
AAACTTTCTCCTATTAAGGG+AGG - tig0015996:6775-6794 Msa1357170:intron 35.0%
!!! CTCTAGTACCATTTTGAGAT+GGG + tig0015996:6930-6949 Msa1357170:intergenic 35.0%
!! TCTCTAGTACCATTTTGAGA+TGG + tig0015996:6931-6950 Msa1357170:intergenic 35.0%
GAGAAGTAAAAACAATGCCT+TGG + tig0015996:7214-7233 Msa1357170:intergenic 35.0%
ATTCACTAACCAGGATAGTA+AGG + tig0015996:7349-7368 Msa1357170:intergenic 35.0%
GTCTTTAACATTCACTAACC+AGG + tig0015996:7358-7377 Msa1357170:intergenic 35.0%
ATGTTAAAGACCATTGGCAT+AGG - tig0015996:7367-7386 Msa1357170:intron 35.0%
TGTTAAAGACCATTGGCATA+GGG - tig0015996:7368-7387 Msa1357170:intron 35.0%
AGTATTGCTTATCATTGCCT+TGG - tig0015996:7457-7476 Msa1357170:intron 35.0%
AAGGACTGACATACTTCTTA+AGG + tig0015996:7550-7569 Msa1357170:intergenic 35.0%
AGCCAAATTCAGAGTCAAAT+AGG - tig0015996:7578-7597 Msa1357170:intron 35.0%
GCCAAATTCAGAGTCAAATA+GGG - tig0015996:7579-7598 Msa1357170:intron 35.0%
ACCCTATTTGACTCTGAATT+TGG + tig0015996:7583-7602 Msa1357170:intergenic 35.0%
TCAGAATGAACGATAGCAAA+AGG + tig0015996:7608-7627 Msa1357170:intergenic 35.0%
!!! AAGGTGGAAATTTTGATTCG+AGG - tig0015996:7779-7798 Msa1357170:intron 35.0%
! TTGTTGTTGGTACATGTCAT+TGG + tig0015996:7809-7828 Msa1357170:intergenic 35.0%
ATGACATGTACCAACAACAA+TGG - tig0015996:7809-7828 Msa1357170:intron 35.0%
!! CGTTGATAATAGTTTGTCTG+TGG + tig0015996:8026-8045 Msa1357170:intergenic 35.0%
CCACTTAAACATCCAAATGA+GGG + tig0015996:8143-8162 Msa1357170:intergenic 35.0%
CCTCATTTGGATGTTTAAGT+GGG - tig0015996:8141-8160 Msa1357170:intron 35.0%
AATGAGTAACGTGTAAAAGC+AGG + tig0015996:8168-8187 Msa1357170:intergenic 35.0%
! AAAGTATATTGCTGGATTGG+AGG + tig0015996:8231-8250 Msa1357170:intergenic 35.0%
! AGATGTTACCTTCTTTGAAG+AGG - tig0015996:8253-8272 Msa1357170:intron 35.0%
ATATGATGCCTCTTCAAAGA+AGG + tig0015996:8264-8283 Msa1357170:intergenic 35.0%
TTTATATCCCTTGAACCCAT+CGG - tig0015996:8355-8374 Msa1357170:intron 35.0%
AGTATGAAAATCGTTGGAGT+CGG + tig0015996:8511-8530 Msa1357170:intergenic 35.0%
! CGATTTTCATACTGTTGATC+TGG - tig0015996:8518-8537 Msa1357170:intron 35.0%
! TGTCTTTTGTCTTTCTTCCT+AGG - tig0015996:8600-8619 Msa1357170:intron 35.0%
!! TCTTCCTAGGAATTTTAGTG+AGG - tig0015996:8613-8632 Msa1357170:intron 35.0%
!! ACTATTTTTCTTGGGGAAAG+AGG + tig0015996:8713-8732 Msa1357170:intergenic 35.0%
! AATTGAAGACATCTAGGGTA+CGG + tig0015996:8914-8933 Msa1357170:intergenic 35.0%
TTCTTGGTATGGCAACTATT+TGG - tig0015996:8938-8957 Msa1357170:intron 35.0%
! ACTAAAGGTTTGTCGCTTAA+GGG - tig0015996:9043-9062 Msa1357170:intron 35.0%
AAGTTGTAGCGATCTCTTTA+TGG - tig0015996:9084-9103 Msa1357170:intron 35.0%
!! TGCAATAATTTGGTGTGACT+TGG - tig0015996:9154-9173 Msa1357170:intron 35.0%
TTTAACTCTCCCCAAGTTTA+TGG + tig0015996:9329-9348 Msa1357170:intergenic 35.0%
GAGATAGCTTATTCAGAGAA+TGG - tig0015996:9364-9383 Msa1357170:intron 35.0%
! TTTTCTGTTAACATCCACGA+GGG + tig0015996:9461-9480 Msa1357170:intergenic 35.0%
TCGTGGATGTTAACAGAAAA+GGG - tig0015996:9461-9480 Msa1357170:intron 35.0%
AACAGAAAAGGGAAATTGGT+TGG - tig0015996:9472-9491 Msa1357170:intron 35.0%
!! CATAAGAGTACTTTGGATCA+AGG - tig0015996:9626-9645 Msa1357170:intron 35.0%
AAGACAATGGAAATGCATTG+TGG - tig0015996:9660-9679 Msa1357170:intron 35.0%
AGACAATGGAAATGCATTGT+GGG - tig0015996:9661-9680 Msa1357170:intron 35.0%
TGGGATATTCTGATGTAGAT+TGG - tig0015996:9680-9699 Msa1357170:intron 35.0%
GGGATATTCTGATGTAGATT+GGG - tig0015996:9681-9700 Msa1357170:intron 35.0%
TCTTACTCTTCCAGTAAACA+AGG + tig0015996:9765-9784 Msa1357170:intergenic 35.0%
ATTAGGTTTGATGCAATGTG+AGG + tig0015996:9940-9959 Msa1357170:intergenic 35.0%
TACTAACTACAACAGAGAAG+TGG + tig0015996:10332-10351 Msa1357170:intergenic 35.0%
! TACAGATCCACTTCTTTTCA+AGG - tig0015996:10412-10431 Msa1357170:intron 35.0%
CAATCTACCTTGAAAAGAAG+TGG + tig0015996:10422-10441 Msa1357170:intergenic 35.0%
! TATCAGATAACTTTTGCCTC+AGG + tig0015996:10489-10508 Msa1357170:intergenic 35.0%
GTCAAACTAAATTCTCTGAC+TGG + tig0015996:10543-10562 Msa1357170:intergenic 35.0%
AGTTGAAACCCTTAACATCA+TGG - tig0015996:10644-10663 Msa1357170:CDS 35.0%
GTTATCAGCCATGATGTTAA+GGG + tig0015996:10655-10674 Msa1357170:intergenic 35.0%
AGTTATCAGCCATGATGTTA+AGG + tig0015996:10656-10675 Msa1357170:intergenic 35.0%
! TCTCGGCCTTCTTCTTTTTA+CGG + tig0015996:5296-5315 Msa1357170:intergenic 40.0%
!! CAGCTGATTTGTGTAGTAGA+GGG + tig0015996:5370-5389 Msa1357170:intergenic 40.0%
CTCTACTACACAAATCAGCT+GGG - tig0015996:5369-5388 Msa1357170:three_prime_UTR 40.0%
!! GTTGATGGTTACAATGTCTG+TGG - tig0015996:5438-5457 Msa1357170:three_prime_UTR 40.0%
CACCTTTAGTATGCTTAGAG+AGG - tig0015996:5539-5558 Msa1357170:three_prime_UTR 40.0%
GACCTCTCTAAGCATACTAA+AGG + tig0015996:5544-5563 Msa1357170:intergenic 40.0%
GTATTTGATGCCATGATGTC+TGG - tig0015996:5576-5595 Msa1357170:three_prime_UTR 40.0%
TGAGAAAACAATGTCGATGC+CGG + tig0015996:5628-5647 Msa1357170:intergenic 40.0%
!! GTTTCAGCTTTAAAGGAGGA+TGG - tig0015996:5791-5810 Msa1357170:intron 40.0%
!! ATACTCTGGATGTTTTCAGG+GGG - tig0015996:6086-6105 Msa1357170:intron 40.0%
! GTAGATCAAGGCATCACAAA+AGG - tig0015996:6408-6427 Msa1357170:intron 40.0%
AAGAGATGCTTCAAGAGCAA+AGG - tig0015996:6437-6456 Msa1357170:intron 40.0%
TGCACAGGCAATTAATACAC+AGG + tig0015996:6559-6578 Msa1357170:intergenic 40.0%
! TATTGCATCTCAAGTTGCAC+AGG + tig0015996:6574-6593 Msa1357170:intergenic 40.0%
! TTATGGCAGAACTTTTCTGC+AGG + tig0015996:6728-6747 Msa1357170:intergenic 40.0%
TTCACCTATTGCTTGAACCA+GGG + tig0015996:6965-6984 Msa1357170:intergenic 40.0%
TTTCACCTATTGCTTGAACC+AGG + tig0015996:6966-6985 Msa1357170:intergenic 40.0%
ACTGCCTTCAACCATTAATC+TGG - tig0015996:7101-7120 Msa1357170:intron 40.0%
GTCACCAGATTAATGGTTGA+AGG + tig0015996:7108-7127 Msa1357170:intergenic 40.0%
! GTGATTGGTCACCAGATTAA+TGG + tig0015996:7115-7134 Msa1357170:intergenic 40.0%
!! GGCTCTAAATTACTTGTCCA+AGG - tig0015996:7194-7213 Msa1357170:intron 40.0%
GAGGAAAGTCTTGATGCAAT+GGG + tig0015996:7653-7672 Msa1357170:intergenic 40.0%
AGAGGAAAGTCTTGATGCAA+TGG + tig0015996:7654-7673 Msa1357170:intergenic 40.0%
AAGACGAATAAGGGACAAAG+AGG + tig0015996:7672-7691 Msa1357170:intergenic 40.0%
TGTTGGTACATGTCATTGGT+AGG + tig0015996:7805-7824 Msa1357170:intergenic 40.0%
GTGAAGTCAGTTACATCTGT+TGG + tig0015996:7870-7889 Msa1357170:intergenic 40.0%
CGACACTTGATTCACTTGTT+GGG + tig0015996:7953-7972 Msa1357170:intergenic 40.0%
CCAACAAGTGAATCAAGTGT+CGG - tig0015996:7951-7970 Msa1357170:intron 40.0%
CTAACATCCATGACAGATTG+TGG + tig0015996:7991-8010 Msa1357170:intergenic 40.0%
CCCTCATTTGGATGTTTAAG+TGG - tig0015996:8140-8159 Msa1357170:intron 40.0%
CCCACTTAAACATCCAAATG+AGG + tig0015996:8144-8163 Msa1357170:intergenic 40.0%
! ATTGCTGGATTGGAGGAATT+AGG + tig0015996:8224-8243 Msa1357170:intergenic 40.0%
ATAATGAGAGGTTTCTGCTG+AGG + tig0015996:8421-8440 Msa1357170:intergenic 40.0%
GAAACCTCTCATTATGCAGA+TGG - tig0015996:8426-8445 Msa1357170:intron 40.0%
CATTCCATCTGCATAATGAG+AGG + tig0015996:8433-8452 Msa1357170:intergenic 40.0%
GTATGAAAATCGTTGGAGTC+GGG + tig0015996:8510-8529 Msa1357170:intergenic 40.0%
AGAGCCTCACTAAAATTCCT+AGG + tig0015996:8620-8639 Msa1357170:intergenic 40.0%
GGCTCTCTCAATTGAGTTAA+AGG - tig0015996:8634-8653 Msa1357170:intron 40.0%
! CCAACAACAGTTTTTCGTCA+GGG + tig0015996:8770-8789 Msa1357170:intergenic 40.0%
! TCCAACAACAGTTTTTCGTC+AGG + tig0015996:8771-8790 Msa1357170:intergenic 40.0%
AAAGCTCGTGAACTGCAAAA+AGG - tig0015996:8845-8864 Msa1357170:intron 40.0%
GTATGGCAACTATTTGGCAT+TGG - tig0015996:8944-8963 Msa1357170:intron 40.0%
CTTAAGCGACAAACCTTTAG+TGG + tig0015996:9044-9063 Msa1357170:intergenic 40.0%
! CACTAAAGGTTTGTCGCTTA+AGG - tig0015996:9042-9061 Msa1357170:intron 40.0%
! CTAAAGGTTTGTCGCTTAAG+GGG - tig0015996:9044-9063 Msa1357170:intron 40.0%
! TTTGTCGCTTAAGGGGATTA+AGG - tig0015996:9051-9070 Msa1357170:intron 40.0%
! CTTTTCTGTTAACATCCACG+AGG + tig0015996:9462-9481 Msa1357170:intergenic 40.0%
CTCGTGGATGTTAACAGAAA+AGG - tig0015996:9460-9479 Msa1357170:intron 40.0%
! ATTGGTTGGTTCAAGAGACT+AGG - tig0015996:9486-9505 Msa1357170:intron 40.0%
AGAGACTAGGTGGTAAATGT+AGG - tig0015996:9499-9518 Msa1357170:intron 40.0%
ACTCATCATGTTAACTGCGA+AGG + tig0015996:9555-9574 Msa1357170:intergenic 40.0%
! TTGGAGCAAACCTTGTTTAC+TGG - tig0015996:9752-9771 Msa1357170:intron 40.0%
! TGAAACTGTTACTTCACGAG+TGG - tig0015996:9863-9882 Msa1357170:intron 40.0%
CTTTAACAGATCCTACCGAT+TGG - tig0015996:10367-10386 Msa1357170:intron 40.0%
TAGTAAGCAAACCAATCGGT+AGG + tig0015996:10381-10400 Msa1357170:intergenic 40.0%
CAATCTTGATGCAGAAGTAG+TGG - tig0015996:10450-10469 Msa1357170:intron 40.0%
CGGTAACTAGTTGAAGGTCT+TGG + tig0015996:5276-5295 None:intergenic 45.0%
AAAGAAGAAGGCCGAGAAAG+AGG - tig0015996:5299-5318 Msa1357170:three_prime_UTR 45.0%
ATCCGCAAGATCCTCTTTCT+CGG + tig0015996:5313-5332 Msa1357170:intergenic 45.0%
GATCACGATAGAGGTCAGTT+TGG + tig0015996:5338-5357 Msa1357170:intergenic 45.0%
AGGTTGTTGGATCACGATAG+AGG + tig0015996:5347-5366 Msa1357170:intergenic 45.0%
! CTGATTTGTGTAGTAGAGGG+AGG + tig0015996:5367-5386 Msa1357170:intergenic 45.0%
!! CCAGCTGATTTGTGTAGTAG+AGG + tig0015996:5371-5390 Msa1357170:intergenic 45.0%
CCTCTACTACACAAATCAGC+TGG - tig0015996:5368-5387 Msa1357170:three_prime_UTR 45.0%
TACACAAATCAGCTGGGTCT+TGG - tig0015996:5375-5394 Msa1357170:three_prime_UTR 45.0%
ACACAAATCAGCTGGGTCTT+GGG - tig0015996:5376-5395 Msa1357170:three_prime_UTR 45.0%
!! GTCCCTGTTTTGCTTGTTGA+TGG - tig0015996:5423-5442 Msa1357170:three_prime_UTR 45.0%
ATTGGGGAATCCAGACATCA+TGG + tig0015996:5589-5608 Msa1357170:intergenic 45.0%
CTGATGCATCTGCTGATACA+TGG - tig0015996:5649-5668 Msa1357170:CDS 45.0%
TGTCAACAACAAGCAGCACA+TGG - tig0015996:5848-5867 Msa1357170:intron 45.0%
TGCCTTGCTACTCCAAACAA+AGG + tig0015996:6112-6131 Msa1357170:intergenic 45.0%
! TGTTTGGAGTAGCAAGGCAT+TGG - tig0015996:6113-6132 Msa1357170:intron 45.0%
! GATCAAGGCATCACAAAAGG+AGG - tig0015996:6411-6430 Msa1357170:intron 45.0%
ATGAGCAATTGTAGTGGTGG+AGG + tig0015996:7016-7035 Msa1357170:intergenic 45.0%
GGTATGAGCAATTGTAGTGG+TGG + tig0015996:7019-7038 Msa1357170:intergenic 45.0%
GTCGGTATGAGCAATTGTAG+TGG + tig0015996:7022-7041 Msa1357170:intergenic 45.0%
! TCTGGAACAGTTAAAGGCGT+GGG + tig0015996:7310-7329 Msa1357170:intergenic 45.0%
! ATCTGGAACAGTTAAAGGCG+TGG + tig0015996:7311-7330 Msa1357170:intergenic 45.0%
CTATCTGTAGAGATCTCCCA+TGG - tig0015996:7411-7430 Msa1357170:intron 45.0%
TACTGAGAGACTCAGTAGCA+GGG + tig0015996:7441-7460 Msa1357170:intergenic 45.0%
ATACTGAGAGACTCAGTAGC+AGG + tig0015996:7442-7461 Msa1357170:intergenic 45.0%
! GATTCACTTGTTGGGTGTGA+GGG + tig0015996:7945-7964 Msa1357170:intergenic 45.0%
! TGATTCACTTGTTGGGTGTG+AGG + tig0015996:7946-7965 Msa1357170:intergenic 45.0%
CCGACACTTGATTCACTTGT+TGG + tig0015996:7954-7973 Msa1357170:intergenic 45.0%
!! ACAAGTGAATCAAGTGTCGG+TGG - tig0015996:7954-7973 Msa1357170:intron 45.0%
GAAAACGCCACAATCTGTCA+TGG - tig0015996:7981-8000 Msa1357170:intron 45.0%
AGATCTTCCAGCATCCACAA+TGG - tig0015996:8113-8132 Msa1357170:intron 45.0%
TGCAGATGGAATGTCATTCG+AGG - tig0015996:8440-8459 Msa1357170:intron 45.0%
CGGGAACAATCATCTCATCA+TGG + tig0015996:8664-8683 Msa1357170:intergenic 45.0%
TTCCACATGTCGTTATACGC+GGG + tig0015996:8683-8702 Msa1357170:intergenic 45.0%
GTTCCACATGTCGTTATACG+CGG + tig0015996:8684-8703 Msa1357170:intergenic 45.0%
CCCTGACGAAAAACTGTTGT+TGG - tig0015996:8767-8786 Msa1357170:intron 45.0%
TTCACGATGACAAGGAAGGA+AGG + tig0015996:8998-9017 Msa1357170:intergenic 45.0%
CTTCTTCACGATGACAAGGA+AGG + tig0015996:9002-9021 Msa1357170:intergenic 45.0%
GTCTCTTCTTCACGATGACA+AGG + tig0015996:9006-9025 Msa1357170:intergenic 45.0%
CTTATTCAGAGAATGGCACG+CGG - tig0015996:9371-9390 Msa1357170:intron 45.0%
GGGTTGTTGTGTGAAGACAA+TGG - tig0015996:9647-9666 Msa1357170:intron 45.0%
GTGTAGTAGAGGGAGGTTGT+TGG + tig0015996:5360-5379 Msa1357170:intergenic 50.0%
CACAAATCAGCTGGGTCTTG+GGG - tig0015996:5377-5396 Msa1357170:three_prime_UTR 50.0%
ACAAATCAGCTGGGTCTTGG+GGG - tig0015996:5378-5397 Msa1357170:three_prime_UTR 50.0%
GTCTGGATTCCCCAATCACA+AGG - tig0015996:5593-5612 Msa1357170:three_prime_UTR 50.0%
AAGTGACGACCCAGACTTTG+GGG + tig0015996:5820-5839 Msa1357170:intergenic 50.0%
GAAGTGACGACCCAGACTTT+GGG + tig0015996:5821-5840 Msa1357170:intergenic 50.0%
AGAAGTGACGACCCAGACTT+TGG + tig0015996:5822-5841 Msa1357170:intergenic 50.0%
!! GTTTTCAGGGGGCCTTTGTT+TGG - tig0015996:6097-6116 Msa1357170:intron 50.0%
! GGCCTTTGTTTGGAGTAGCA+AGG - tig0015996:6107-6126 Msa1357170:intron 50.0%
!! TAGCAAGGCATTGGTAACCG+AGG - tig0015996:6122-6141 Msa1357170:intron 50.0%
CTATTGCTTGAACCAGGGCT+AGG + tig0015996:6960-6979 Msa1357170:intergenic 50.0%
CTAGCCCTGGTTCAAGCAAT+AGG - tig0015996:6958-6977 Msa1357170:intron 50.0%
TGCTTCATGCCCTATGCCAA+TGG + tig0015996:7380-7399 Msa1357170:intergenic 50.0%
TCAGTAGCAGGGCATACCAT+GGG + tig0015996:7430-7449 Msa1357170:intergenic 50.0%
GATGCAATGGGTACGTAGCT+TGG + tig0015996:7641-7660 Msa1357170:intergenic 50.0%
!! TGAATCAAGTGTCGGTGGTG+AGG - tig0015996:7959-7978 Msa1357170:intron 50.0%
CAAATGAGGGAGCTCCATTG+TGG + tig0015996:8130-8149 Msa1357170:intergenic 50.0%
CACAATGGAGCTCCCTCATT+TGG - tig0015996:8128-8147 Msa1357170:intron 50.0%
ATATCCCTTGAACCCATCGG+CGG - tig0015996:8358-8377 Msa1357170:intron 50.0%
!! GTCTTCTAGAATCCGCCGAT+GGG + tig0015996:8373-8392 Msa1357170:intergenic 50.0%
!! AGTCTTCTAGAATCCGCCGA+TGG + tig0015996:8374-8393 Msa1357170:intergenic 50.0%
TTCCCGCGTATAACGACATG+TGG - tig0015996:8678-8697 Msa1357170:intron 50.0%
ATTGAAATCCTGGACCCTCG+TGG - tig0015996:9444-9463 Msa1357170:intron 50.0%
! GGTTGGTTCAAGAGACTAGG+TGG - tig0015996:9489-9508 Msa1357170:intron 50.0%
!!! AGTTTTTTGGTCGGGTGTGC+AGG - tig0015996:9795-9814 Msa1357170:intron 50.0%
GTGGGTGATTGATTGTGCTC+AGG - tig0015996:10184-10203 Msa1357170:intron 50.0%
!! TGGATGCTCTGAAGAACCTG+AGG - tig0015996:10470-10489 Msa1357170:CDS 50.0%
! CAGCGATTTTGCATTCCCAC+AGG + tig0015996:10824-10843 Msa1357170:intergenic 50.0%
GGCCGAGAAAGAGGATCTTG+CGG - tig0015996:5308-5327 Msa1357170:three_prime_UTR 55.0%
AGGATGGTTGCCCCAAAGTC+TGG - tig0015996:5807-5826 Msa1357170:intron 55.0%
GGATGGTTGCCCCAAAGTCT+GGG - tig0015996:5808-5827 Msa1357170:intron 55.0%
TAGAGAAACCCACCTAGCCC+TGG - tig0015996:6945-6964 Msa1357170:intron 55.0%
TGCTTGAACCAGGGCTAGGT+GGG + tig0015996:6956-6975 Msa1357170:intergenic 55.0%
TTGCTTGAACCAGGGCTAGG+TGG + tig0015996:6957-6976 Msa1357170:intergenic 55.0%
CTCAGTAGCAGGGCATACCA+TGG + tig0015996:7431-7450 Msa1357170:intergenic 55.0%
CTTGTTGGGTGTGAGGGTCA+AGG + tig0015996:7939-7958 Msa1357170:intergenic 55.0%
! GAATCCGCCGATGGGTTCAA+GGG + tig0015996:8365-8384 Msa1357170:intergenic 55.0%
! AGAATCCGCCGATGGGTTCA+AGG + tig0015996:8366-8385 Msa1357170:intergenic 55.0%
GTTAACATCCACGAGGGTCC+AGG + tig0015996:9455-9474 Msa1357170:intergenic 55.0%
TGGGTGTGAGGGTCAAGGTG+TGG + tig0015996:7934-7953 Msa1357170:intergenic 60.0%
GGGAGCTCCATTGTGGATGC+TGG + tig0015996:8123-8142 Msa1357170:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0015996 gene 5267 10882 5267 ID=Msa1357170;Name=Msa1357170
tig0015996 mRNA 5267 10882 5267 ID=Msa1357170-mRNA-1;Parent=Msa1357170;Name=Msa1357170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|1|1|1|1|5|360|230
tig0015996 exon 5267 5732 5267 ID=Msa1357170-mRNA-1:exon:10284;Parent=Msa1357170-mRNA-1
tig0015996 exon 9691 9737 9691 ID=Msa1357170-mRNA-1:exon:10283;Parent=Msa1357170-mRNA-1
tig0015996 exon 10006 10044 10006 ID=Msa1357170-mRNA-1:exon:10282;Parent=Msa1357170-mRNA-1
tig0015996 exon 10275 10358 10275 ID=Msa1357170-mRNA-1:exon:10281;Parent=Msa1357170-mRNA-1
tig0015996 exon 10466 10882 10466 ID=Msa1357170-mRNA-1:exon:10280;Parent=Msa1357170-mRNA-1
tig0015996 CDS 10466 10882 10466 ID=Msa1357170-mRNA-1:cds;Parent=Msa1357170-mRNA-1
tig0015996 CDS 10275 10358 10275 ID=Msa1357170-mRNA-1:cds;Parent=Msa1357170-mRNA-1
tig0015996 CDS 10006 10044 10006 ID=Msa1357170-mRNA-1:cds;Parent=Msa1357170-mRNA-1
tig0015996 CDS 9691 9737 9691 ID=Msa1357170-mRNA-1:cds;Parent=Msa1357170-mRNA-1
tig0015996 CDS 5627 5732 5627 ID=Msa1357170-mRNA-1:cds;Parent=Msa1357170-mRNA-1
tig0015996 three_prime_UTR 5267 5626 5267 ID=Msa1357170-mRNA-1:three_prime_utr;Parent=Msa1357170-mRNA-1
Gene Sequence

>Msa1357170

AGCACTCCAAGACCTTCAACTAGTTACCGTAAAAAGAAGAAGGCCGAGAAAGAGGATCTTGCGGATGACCAAACTGACCTCTATCGTGATCCAACAACCTCCCTCTACTACACAAATCAGCTGGGTCTTGGGGGTTTAATTGACAATGCTGCTGCTGTCCCTGTTTTGCTTGTTGATGGTTACAATGTCTGTGGATATTGGATGAAACTCAAAAAACATTTTCTCAATGGCAAACTTGAACTTGCTCGCCAGAAGCTTATTGACGAACTTATCACCTTTAGTATGCTTAGAGAGGTCAAAGTCGTTGTTGTATTTGATGCCATGATGTCTGGATTCCCCAATCACAAGGAATATTCTTCCGGCATCGACATTGTTTTCTCAACTGATGCATCTGCTGATACATGGATTGAAAAAGAGGTTTCAGCTTTAAAGGAGGATGGTTGCCCCAAAGTCTGGGTCGTCACTTCTGATCACTGTCAACAACAAGCAGCACATGGAGCAGGGGCCTTTGTTTGGAGTAGCAAGGCATTGGTAACCGAGATCAAGGCATCACAAAAGGAGGTTGAAGAGATGCTTCAAGAGCAAAGATCCACTTCTTTTCAAGGTAGATTGTTGAAGCACAATCTTGATGCAGAAGTAGTGGATGCTCTGAAGAACCTGAGGCAAAAGTTATCTGATAATGAGTTGAAGTAA

Protein sequence

>Msa1357170

STPRPSTSYRKKKKAEKEDLADDQTDLYRDPTTSLYYTNQLGLGGLIDNAAAVPVLLVDGYNVCGYWMKLKKHFLNGKLELARQKLIDELITFSMLREVKVVVVFDAMMSGFPNHKEYSSGIDIVFSTDASADTWIEKEVSALKEDGCPKVWVVTSDHCQQQAAHGAGAFVWSSKALVTEIKASQKEVEEMLQEQRSTSFQGRLLKHNLDAEVVDALKNLRQKLSDNELK*