AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342640 MtrunA17_Chr4g0066941 96.101 513 7 3 1 500 1 513 0.0 961
Msa1342640 MtrunA17_Chr2g0286151 67.137 496 126 6 18 500 11 482 0.0 558
Msa1342640 MtrunA17_Chr2g0286151 34.810 158 69 3 270 393 10 167 9.21e-17 82.8
Msa1342640 MtrunA17_Chr1g0195891 52.785 377 127 10 5 367 4 343 3.65e-112 335
Msa1342640 MtrunA17_Chr1g0195891 49.333 75 36 1 320 392 92 166 5.65e-17 82.4
Msa1342640 MtrunA17_Chr7g0249221 45.122 410 174 13 42 441 27 395 4.25e-103 315
Msa1342640 MtrunA17_Chr5g0438891 39.227 362 157 12 42 397 36 340 4.00e-72 234
Msa1342640 MtrunA17_Chr5g0438891 48.780 82 42 0 39 120 75 156 1.16e-19 91.3
Msa1342640 MtrunA17_Chr5g0438891 42.391 92 52 1 28 119 248 338 2.22e-15 78.2
Msa1342640 MtrunA17_Chr3g0116431 36.585 369 166 11 37 394 166 477 2.03e-64 217
Msa1342640 MtrunA17_Chr3g0116431 40.964 83 42 3 320 397 172 252 2.23e-11 66.2
Msa1342640 MtrunA17_Chr4g0058011 37.500 376 153 14 38 396 227 537 4.23e-63 215
Msa1342640 MtrunA17_Chr8g0356241 32.440 373 194 11 42 392 138 474 6.97e-46 167
Msa1342640 MtrunA17_Chr8g0356241 33.898 177 79 4 21 163 167 339 1.39e-26 112
Msa1342640 MtrunA17_Chr8g0356241 35.135 185 73 4 35 173 302 485 1.27e-25 110
Msa1342640 MtrunA17_Chr8g0356241 42.683 82 39 3 320 393 139 220 1.57e-12 69.7
Msa1342640 MtrunA17_Chr1g0195901 57.303 89 35 2 396 484 1 86 2.03e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342640 AT5G18550.1 51.969 508 183 15 3 493 2 465 6.74e-146 426
Msa1342640 AT5G18550.4 53.669 477 166 14 3 462 2 440 1.78e-144 422
Msa1342640 AT2G47850.1 51.535 456 170 9 20 464 16 431 5.05e-144 422
Msa1342640 AT2G47850.3 51.535 456 170 9 20 464 16 431 5.05e-144 422
Msa1342640 AT5G18550.3 53.680 462 164 13 40 493 14 433 2.19e-141 414
Msa1342640 AT5G18550.2 50.296 507 180 15 3 493 2 452 1.29e-137 405
Msa1342640 AT3G06410.1 56.481 432 139 13 3 415 2 403 2.10e-131 389
Msa1342640 AT2G47850.2 46.711 456 166 10 20 464 16 405 3.29e-119 357
Msa1342640 AT3G02830.1 44.828 377 149 8 41 408 36 362 1.79e-97 300
Msa1342640 AT3G02830.1 42.857 84 47 1 310 392 28 111 7.61e-14 73.6
Msa1342640 AT3G02830.2 44.828 377 149 8 41 408 16 342 2.11e-97 299
Msa1342640 AT3G02830.2 42.857 84 47 1 310 392 8 91 7.90e-14 73.6
Msa1342640 AT2G47850.4 50.578 346 124 8 126 464 4 309 5.77e-94 289
Msa1342640 AT2G47850.4 51.765 85 41 0 79 163 156 240 4.75e-23 100
Msa1342640 AT2G47850.4 39.773 88 44 2 34 116 156 239 8.14e-16 79.3
Msa1342640 AT1G04990.1 37.360 356 152 11 42 392 44 333 2.32e-63 212
Msa1342640 AT1G04990.1 40.833 120 69 2 305 423 73 191 4.53e-21 95.9
Msa1342640 AT1G04990.1 42.683 82 47 0 40 121 85 166 2.90e-17 84.3
Msa1342640 AT1G04990.1 38.182 110 58 3 89 195 260 362 2.15e-12 69.3
Msa1342640 AT1G04990.6 37.360 356 152 11 42 392 44 333 2.32e-63 212
Msa1342640 AT1G04990.6 40.833 120 69 2 305 423 73 191 4.53e-21 95.9
Msa1342640 AT1G04990.6 42.683 82 47 0 40 121 85 166 2.90e-17 84.3
Msa1342640 AT1G04990.6 38.182 110 58 3 89 195 260 362 2.15e-12 69.3
Msa1342640 AT1G04990.2 37.360 356 152 11 42 392 44 333 2.32e-63 212
Msa1342640 AT1G04990.2 40.833 120 69 2 305 423 73 191 4.53e-21 95.9
Msa1342640 AT1G04990.2 42.683 82 47 0 40 121 85 166 2.90e-17 84.3
Msa1342640 AT1G04990.2 38.182 110 58 3 89 195 260 362 2.15e-12 69.3
Msa1342640 AT2G32930.3 32.432 481 228 17 42 494 14 425 1.24e-62 211
Msa1342640 AT2G32930.3 39.286 84 51 0 34 117 50 133 9.29e-16 79.7
Msa1342640 AT2G32930.2 32.432 481 228 17 42 494 41 452 1.73e-62 211
Msa1342640 AT2G32930.2 39.759 83 50 0 34 116 77 159 1.10e-15 79.7
Msa1342640 AT5G63260.1 38.360 378 158 14 42 403 98 416 1.88e-60 205
Msa1342640 AT5G63260.1 38.961 77 46 1 40 115 329 405 1.04e-13 73.6
Msa1342640 AT1G04990.5 36.338 355 137 12 42 392 44 313 4.18e-59 200
Msa1342640 AT1G04990.5 40.833 120 69 2 305 423 73 191 3.75e-21 95.9
Msa1342640 AT1G04990.5 42.683 82 47 0 40 121 85 166 3.47e-17 84.0
Msa1342640 AT2G32930.1 32.225 481 225 18 42 494 41 448 1.57e-58 200
Msa1342640 AT5G16540.1 36.607 336 160 9 23 348 23 315 2.65e-58 197
Msa1342640 AT5G16540.1 53.261 92 41 1 315 404 236 327 4.50e-26 110
Msa1342640 AT5G16540.1 51.948 77 37 0 87 163 240 316 3.87e-19 89.7
Msa1342640 AT5G16540.1 46.667 75 38 1 320 392 85 159 8.66e-17 82.4
Msa1342640 AT5G16540.1 39.394 99 55 2 318 415 38 132 1.12e-12 70.1
Msa1342640 AT5G16540.3 36.607 336 160 9 23 348 2 294 4.50e-58 196
Msa1342640 AT5G16540.3 53.261 92 41 1 315 404 215 306 4.28e-26 109
Msa1342640 AT5G16540.3 51.948 77 37 0 87 163 219 295 4.52e-19 89.0
Msa1342640 AT5G16540.3 46.667 75 38 1 320 392 64 138 9.66e-17 82.0
Msa1342640 AT5G16540.3 39.394 99 55 2 318 415 17 111 1.12e-12 69.7
Msa1342640 AT5G63260.2 36.802 394 158 15 42 403 98 432 4.32e-57 196
Msa1342640 AT5G63260.2 38.961 77 46 1 40 115 345 421 1.18e-13 73.6
Msa1342640 AT5G16540.2 36.070 341 148 11 23 348 23 308 8.15e-56 191
Msa1342640 AT5G16540.2 47.778 90 42 1 315 404 236 320 2.08e-20 93.2
Msa1342640 AT5G16540.2 46.667 75 38 1 320 392 85 159 8.32e-17 82.4
Msa1342640 AT5G16540.2 39.394 99 55 2 318 415 38 132 9.97e-13 70.1
Msa1342640 AT5G16540.4 48.205 195 83 5 23 214 2 181 1.82e-55 187
Msa1342640 AT5G16540.4 33.553 152 92 2 320 469 64 208 4.47e-17 81.6
Msa1342640 AT5G16540.4 60.000 55 20 1 315 367 215 269 2.60e-14 73.6
Msa1342640 AT5G16540.4 39.394 99 55 2 318 415 17 111 6.18e-13 69.7
Msa1342640 AT1G04990.3 34.219 301 129 10 97 392 16 252 3.30e-41 150
Msa1342640 AT1G04990.3 43.000 100 55 2 325 423 12 110 1.56e-17 84.0
Msa1342640 AT1G04990.3 43.478 69 39 0 53 121 17 85 2.05e-14 74.7
Msa1342640 AT1G04990.3 38.182 110 58 3 89 195 179 281 1.19e-12 69.3
Msa1342640 AT3G48440.1 34.940 332 168 11 87 391 107 417 8.95e-39 147
Msa1342640 AT3G48440.1 32.749 342 188 13 31 347 93 417 4.05e-36 139
Msa1342640 AT3G48440.1 37.500 80 49 1 40 118 341 420 3.09e-13 72.0
Msa1342640 AT3G48440.1 29.508 183 68 5 313 440 101 277 4.57e-13 71.6
Msa1342640 AT1G04990.4 33.000 300 114 11 97 392 16 232 4.25e-37 139
Msa1342640 AT1G04990.4 43.000 100 55 2 325 423 12 110 1.18e-17 84.0
Msa1342640 AT1G04990.4 43.478 69 39 0 53 121 17 85 2.43e-14 74.3
Msa1342640 AT3G12680.1 41.060 151 61 3 39 163 219 367 1.41e-32 130
Msa1342640 AT3G12680.1 40.331 181 62 6 34 171 329 506 2.44e-28 118
Msa1342640 AT3G12680.1 42.969 128 64 3 42 163 171 295 2.96e-27 115
Msa1342640 AT3G12680.1 32.500 200 74 5 36 174 259 458 3.97e-23 102
Msa1342640 AT3G12680.1 48.810 84 34 1 318 392 416 499 3.59e-19 90.9
Msa1342640 AT3G12680.1 31.250 144 70 3 312 427 258 400 7.73e-16 80.5
Msa1342640 AT3G12680.1 38.614 101 54 3 320 412 172 272 1.13e-13 73.9
Msa1342640 AT3G12680.1 46.575 73 38 1 320 392 223 294 2.19e-13 72.8
Msa1342640 AT1G48195.1 46.250 80 41 1 316 393 3 82 4.78e-19 82.0
Msa1342640 AT1G48195.1 46.053 76 41 0 86 161 5 80 1.01e-16 75.5
Msa1342640 AT1G48195.1 37.662 77 47 1 40 115 4 80 1.99e-11 60.5

Find 227 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAACTGGTTCGGATTTC+TGG 0.117451 tig0005973:-88149 None:intergenic
TCCTGCTGATCAGGCCTTTC+AGG 0.127139 tig0005973:-90113 None:intergenic
TCATTTGTCCAGGGCCCTTA+TGG 0.161593 tig0005973:+89726 Msa1342640:CDS
AAAACAGGGGACTGTAAATT+TGG 0.217295 tig0005973:+90152 Msa1342640:CDS
TGACAAGTAAACTGATAAAA+AGG 0.223297 tig0005973:-92376 None:intergenic
GTTGGTTCGACGCAGCTTTA+TGG 0.252629 tig0005973:+89927 Msa1342640:CDS
TTGTGATTGGTTTAGGTTAT+TGG 0.258647 tig0005973:+88850 Msa1342640:intron
TAAGGGCTCCAGCCTGAAAA+AGG 0.262944 tig0005973:-89777 None:intergenic
AGGACGGGATCGTGCAAATT+TGG 0.273979 tig0005973:+89257 Msa1342640:CDS
CGGTAAACCTTTCGATATCT+TGG 0.304126 tig0005973:-92166 None:intergenic
TTCAGGCTGGAGCCCTTATC+AGG 0.307461 tig0005973:+89782 Msa1342640:CDS
ACTCATGGAGGGTCTCAAAT+AGG 0.308129 tig0005973:+91801 Msa1342640:three_prime_UTR
GGATGAAGCAGGCTCCTTGC+TGG 0.312902 tig0005973:-91550 None:intergenic
CATTTGTCCAGGGCCCTTAT+GGG 0.325235 tig0005973:+89727 Msa1342640:CDS
TACCGTGAAGAGAAGTTATC+AGG 0.333179 tig0005973:+92184 Msa1342640:three_prime_UTR
AATGACTGTTGGACCTGAAC+TGG 0.339111 tig0005973:-91842 None:intergenic
ACGGGCTGTCCAACTCGTTC+TGG 0.343305 tig0005973:-88898 None:intergenic
GCTGGTCCTTATCAATCTTC+TGG 0.343679 tig0005973:+90044 Msa1342640:CDS
GCTGGTCCTTACCAATCTTC+TGG 0.357551 tig0005973:+90014 Msa1342640:CDS
GGCTGTACAGTTTGATAAAC+AGG 0.361283 tig0005973:-89639 None:intergenic
TCTAGGATGGTGATACTTGC+AGG 0.363592 tig0005973:-89285 None:intergenic
GCAGGGTATGGTGGATTGGT+TGG 0.368471 tig0005973:+88476 Msa1342640:intron
TTGGTTCGACGCAGCTTTAT+GGG 0.368819 tig0005973:+89928 Msa1342640:CDS
TGCTGACATTCCTGCTGATC+AGG 0.370843 tig0005973:-90122 None:intergenic
TCACCAACAACCGTCTATAC+TGG 0.371079 tig0005973:+89966 Msa1342640:CDS
GACATTACCATTGGCCCATA+AGG 0.373452 tig0005973:-89741 None:intergenic
CTGATTGTATCTATTATTTG+AGG 0.384105 tig0005973:+88534 Msa1342640:CDS
CTGGATCCTGATGCAAGTTC+AGG 0.386934 tig0005973:-91531 None:intergenic
AAAAGCAAGTTGCGACTGTA+TGG 0.387335 tig0005973:-91959 None:intergenic
ATTGGAGCTGCGAGGATTGC+CGG 0.388091 tig0005973:+88868 Msa1342640:CDS
GCTCATTGATGATGACATTC+TGG 0.391929 tig0005973:-91571 None:intergenic
CAACCATCTTCTCAGAGTTC+CGG 0.392756 tig0005973:+91657 Msa1342640:CDS
TCTTGGGAACAATGGCAAAC+AGG 0.395029 tig0005973:-92149 None:intergenic
TGTCAGCATTACATGAAAAC+AGG 0.398214 tig0005973:+90137 Msa1342640:CDS
AGTAAAATGCTTGACTTGTT+GGG 0.398533 tig0005973:+92271 Msa1342640:three_prime_UTR
AGAAACTGGTTCGGATTTCT+GGG 0.399991 tig0005973:-88148 None:intergenic
AAAGTGAACCTTAGTCCTAT+TGG 0.411454 tig0005973:+90218 Msa1342640:CDS
TGAATTAACCACCTGGCAAA+CGG 0.411779 tig0005973:-88917 None:intergenic
GGTGCTACTTGTGGTGGCAC+TGG 0.412279 tig0005973:-91694 None:intergenic
GGTCCCTCAACCGGTCCTTC+AGG 0.414102 tig0005973:+90065 Msa1342640:CDS
CAATCCTCTGGTCCCTCAGC+TGG 0.414974 tig0005973:+89996 Msa1342640:CDS
CAATCTTCTGGTCCCTCAGC+TGG 0.414974 tig0005973:+90026 Msa1342640:CDS
TCTACATGGCTCATTTGTCC+AGG 0.415319 tig0005973:+89716 Msa1342640:CDS
GCACCGACGGAAGTCCATTC+CGG 0.418324 tig0005973:-88342 None:intergenic
AAGAAACTAGAGTGAGAAAC+TGG 0.419904 tig0005973:-88162 None:intergenic
AAAACGGGACAATGCAAGTT+TGG 0.420191 tig0005973:+89516 Msa1342640:CDS
CCCACAGGATAGGGTGCAAC+TGG 0.421391 tig0005973:-91459 None:intergenic
AGAGGTGAAACTTGGGGAAC+TGG 0.421536 tig0005973:-89597 None:intergenic
ACCTGAAAGGCCTGATCAGC+AGG 0.421548 tig0005973:+90112 Msa1342640:CDS
GCATTGGCAGAGGTGAAACT+TGG 0.425784 tig0005973:-89605 None:intergenic
CGATTGACTGTCTTTACTCA+TGG 0.427704 tig0005973:+91786 Msa1342640:three_prime_UTR
AGTCCGGGACATACCTGATA+AGG 0.428673 tig0005973:-89795 None:intergenic
ATAGGACTAAGGTTCACTTT+TGG 0.429387 tig0005973:-90215 None:intergenic
GACTTTGTCAACGGTTGTAC+CGG 0.430550 tig0005973:+91617 Msa1342640:CDS
TATCCTGTGGGTTCCGCCAT+TGG 0.430848 tig0005973:+91471 Msa1342640:CDS
CAATCTTCTGGTCCCTCAAC+CGG 0.435809 tig0005973:+90056 Msa1342640:CDS
AGTTGGACAGCCCGTTTGCC+AGG 0.438645 tig0005973:+88906 Msa1342640:CDS
TCAAGCTTTCGTGTGAGATC+AGG 0.441319 tig0005973:+92396 Msa1342640:three_prime_UTR
AAGCAGATGGACTGTAACTC+AGG 0.442386 tig0005973:-91419 None:intergenic
GGGCGCAAAGGAAGGCCAAT+AGG 0.442531 tig0005973:-90233 None:intergenic
GAATTAACCACCTGGCAAAC+GGG 0.443512 tig0005973:-88916 None:intergenic
TGTATCTATTATTTGAGGAC+AGG 0.449948 tig0005973:+88539 Msa1342640:CDS
CCCTCAAAACAGAGAATGAA+TGG 0.451293 tig0005973:-88208 None:intergenic
GTGTTCCTATTATGTGAAAA+CGG 0.451501 tig0005973:+89500 Msa1342640:CDS
AAGTAAAATGCTTGACTTGT+TGG 0.455044 tig0005973:+92270 Msa1342640:three_prime_UTR
TGGGCATCTGATTGAGAAAC+CGG 0.455710 tig0005973:-91636 None:intergenic
GGGTATGGTGGATTGGTTGG+TGG 0.457920 tig0005973:+88479 Msa1342640:intron
CCCGTGTCGCTAAATTGTTA+TGG 0.459022 tig0005973:+89329 Msa1342640:CDS
GGAAGTACAGGGCTTGCTGC+TGG 0.460193 tig0005973:-89885 None:intergenic
CTCCTGATAACTTCTCTTCA+CGG 0.464631 tig0005973:-92186 None:intergenic
GCGGTTATGGTTCTAGGTGT+CGG 0.465761 tig0005973:+88567 Msa1342640:CDS
GTGGATGGGCATGTGCATAA+TGG 0.466074 tig0005973:-92008 None:intergenic
TGTTGCAGGGTATGGTGGAT+TGG 0.467100 tig0005973:+88472 Msa1342640:intron
TATGGTGGATTGGTTGGTGG+TGG 0.468504 tig0005973:+88482 Msa1342640:CDS
CACCCGCAGGCTGTGGATGA+TGG 0.471640 tig0005973:-89554 None:intergenic
ATTTGGCCACCCGCAGGCTG+TGG 0.472332 tig0005973:-89561 None:intergenic
CGTACCTTTGTTCCATTGTA+CGG 0.473375 tig0005973:-88275 None:intergenic
GGTAAACCTTTCGATATCTT+GGG 0.476022 tig0005973:-92165 None:intergenic
CAGCTGAGGGACCAGAAGAT+TGG 0.481828 tig0005973:-90025 None:intergenic
ACACTCAACGGAGTACTAGA+AGG 0.482108 tig0005973:-89906 None:intergenic
GGTCCTTCACAACAACAATA+TGG 0.484846 tig0005973:+89669 Msa1342640:CDS
AACTCGGATGATGAGGATGA+TGG 0.484942 tig0005973:-91504 None:intergenic
TATTGGCCTTCCTTTGCGCC+CGG 0.486134 tig0005973:+90235 Msa1342640:CDS
TGTTCCTATTATGTGAAAAC+GGG 0.487218 tig0005973:+89501 Msa1342640:CDS
TTGAGGCCTGAACTTGCATC+AGG 0.491757 tig0005973:+91525 Msa1342640:CDS
ACATTACCATTGGCCCATAA+GGG 0.494713 tig0005973:-89740 None:intergenic
GTGAATGTTGCAGGGTATGG+TGG 0.494891 tig0005973:+88467 Msa1342640:intron
ACTGGGAGTTGCTAAAGAAC+CGG 0.495795 tig0005973:-91676 None:intergenic
ACAGGTGAAGGTACCGGCAT+TGG 0.496432 tig0005973:-89621 None:intergenic
AGCTGGCTTGACTTTGTCAA+CGG 0.496678 tig0005973:+91608 Msa1342640:CDS
TGAACACAAAGACAATTGAT+TGG 0.497325 tig0005973:-91868 None:intergenic
TAGATACAATCAGCTTCATC+AGG 0.499288 tig0005973:-88524 None:intergenic
CCTTCGTTTCGTCCGTACAA+TGG 0.504041 tig0005973:+88263 Msa1342640:exon
CTACCTGAAGGACCGGTTGA+GGG 0.505161 tig0005973:-90068 None:intergenic
GATAAAATGGAGTGATAATG+AGG 0.513137 tig0005973:-91754 None:intergenic
CTGGTGATGGTGCTATCATT+TGG 0.515476 tig0005973:-89578 None:intergenic
GGAGTACTAGAAGGAAGTAC+AGG 0.516255 tig0005973:-89897 None:intergenic
ATATCATCATCCGCCGGACA+TGG 0.516601 tig0005973:+90187 Msa1342640:CDS
GCCAGTTGCACCCTATCCTG+TGG 0.516851 tig0005973:+91458 Msa1342640:CDS
GAACCGGAACTCTGAGAAGA+TGG 0.517115 tig0005973:-91660 None:intergenic
TCTAGTACTCCGTTGAGTGT+TGG 0.517479 tig0005973:+89909 Msa1342640:CDS
CGGAACTCTGAGAAGATGGT+TGG 0.517807 tig0005973:-91656 None:intergenic
AACAGAGCAGAGAGAAGAGA+AGG 0.518824 tig0005973:+88097 Msa1342640:five_prime_UTR
TTCCATCATCCACAGCCTGC+GGG 0.519032 tig0005973:+89552 Msa1342640:CDS
GCTATCATTTGGCCACCCGC+AGG 0.521595 tig0005973:-89567 None:intergenic
ACTCTGATCCGTCGCCGGAA+TGG 0.523998 tig0005973:+88328 Msa1342640:CDS
CAGCTGAGGGACCAGAGGAT+TGG 0.524806 tig0005973:-89995 None:intergenic
CCATTGGCCCATAAGGGCCC+TGG 0.526364 tig0005973:-89734 None:intergenic
GAAGGTACCGGCATTGGCAG+AGG 0.526800 tig0005973:-89615 None:intergenic
AGCACATCGACTTCTTCAGC+TGG 0.527262 tig0005973:+91591 Msa1342640:CDS
CTACATGGCTCATTTGTCCA+GGG 0.527744 tig0005973:+89717 Msa1342640:CDS
CTGCAGTACTATGCGAGGAC+GGG 0.528562 tig0005973:+89242 Msa1342640:intron
GTGCTACTTGTGGTGGCACT+GGG 0.532061 tig0005973:-91693 None:intergenic
GGTCCAGTATAGACGGTTGT+TGG 0.532400 tig0005973:-89969 None:intergenic
ACTCGGATGATGAGGATGAT+GGG 0.532572 tig0005973:-91503 None:intergenic
CATTGGCAGAGGTGAAACTT+GGG 0.537765 tig0005973:-89604 None:intergenic
CAAGTATCACCATCCTAGAC+AGG 0.538523 tig0005973:+89289 Msa1342640:CDS
GTCCGGGACATACCTGATAA+GGG 0.540447 tig0005973:-89794 None:intergenic
AATGGCGGAACCCACAGGAT+AGG 0.542826 tig0005973:-91469 None:intergenic
TGCAACTGGCATATCAGAAA+GGG 0.543825 tig0005973:-91445 None:intergenic
GGAACTCTGAGAAGATGGTT+GGG 0.544097 tig0005973:-91655 None:intergenic
GCGAGGCCACCTCTTCTACA+TGG 0.546491 tig0005973:+89702 Msa1342640:CDS
CTTGGGAACAATGGCAAACA+GGG 0.546859 tig0005973:-92148 None:intergenic
ACTGGACCTTACCAATCCTC+TGG 0.549245 tig0005973:+89984 Msa1342640:CDS
GTACCAATGGCGGAACCCAC+AGG 0.549531 tig0005973:-91474 None:intergenic
GTTGCACTCTGATCCGTCGC+CGG 0.554636 tig0005973:+88323 Msa1342640:CDS
CATTCACATTGCTTAGCTTG+AGG 0.554771 tig0005973:-91727 None:intergenic
TGCAAGTTTGATCATCCTAC+GGG 0.556067 tig0005973:+91393 Msa1342640:CDS
ATATTGTTGTTGTGAAGGAC+CGG 0.556322 tig0005973:-89667 None:intergenic
CCAGTTGCACCCTATCCTGT+GGG 0.556861 tig0005973:+91459 Msa1342640:CDS
AACTCGTTCTGGATATTCAC+CGG 0.557101 tig0005973:-88887 None:intergenic
GTGCAACTGGCATATCAGAA+AGG 0.557979 tig0005973:-91446 None:intergenic
ACTACCTGAAGGACCGGTTG+AGG 0.558770 tig0005973:-90069 None:intergenic
ACTAGAGTGAGAAACTGGTT+CGG 0.558999 tig0005973:-88157 None:intergenic
AAGGAAGGCCAATAGGACTA+AGG 0.560421 tig0005973:-90226 None:intergenic
GAAACTTGGGGAACTGGTGA+TGG 0.560745 tig0005973:-89591 None:intergenic
TTGATTGGTGCAATGACTGT+TGG 0.560870 tig0005973:-91853 None:intergenic
ACGGAAGTCCATTCCGGCGA+CGG 0.563671 tig0005973:-88336 None:intergenic
GTATAGACGGTTGTTGGTGA+AGG 0.565761 tig0005973:-89963 None:intergenic
GAGGGACCAGAAGATTGATA+AGG 0.567065 tig0005973:-90050 None:intergenic
AGTTTCACCTCTGCCAATGC+CGG 0.567846 tig0005973:+89608 Msa1342640:CDS
TGATAAACAGGTGAAGGTAC+CGG 0.568456 tig0005973:-89627 None:intergenic
TTCCTGCCGCCTGTCTAGGA+TGG 0.568534 tig0005973:-89298 None:intergenic
ACTTCCGTCGGTGCTGATGA+AGG 0.569648 tig0005973:+88351 Msa1342640:CDS
TTGACTGTCTTTACTCATGG+AGG 0.571021 tig0005973:+91789 Msa1342640:three_prime_UTR
GCTGCAGTACTATGCGAGGA+CGG 0.572531 tig0005973:+89241 Msa1342640:intron
ATGACTGTTGGACCTGAACT+GGG 0.574035 tig0005973:-91841 None:intergenic
AAAGCAAGTTGCGACTGTAT+GGG 0.574997 tig0005973:-91958 None:intergenic
TTTATTCAAGATCAAAGAGA+TGG 0.575418 tig0005973:-91907 None:intergenic
TGACTGTCTTTACTCATGGA+GGG 0.575436 tig0005973:+91790 Msa1342640:three_prime_UTR
GTGCAAGTTTGATCATCCTA+CGG 0.575614 tig0005973:+91392 Msa1342640:CDS
ACACCATATTGTTGTTGTGA+AGG 0.575855 tig0005973:-89672 None:intergenic
CAAACTGTACAGCCTCCGTC+CGG 0.577193 tig0005973:+89648 Msa1342640:CDS
CGCTGGGTATAATGAGTGCA+AGG 0.577555 tig0005973:-91345 None:intergenic
CCAGGGCCCTTATGGGCCAA+TGG 0.578875 tig0005973:+89734 Msa1342640:CDS
GAGACGACCCATCGTTAGCT+CGG 0.581397 tig0005973:-88299 None:intergenic
ATTGTTCCCAAGATATCGAA+AGG 0.581686 tig0005973:+92159 Msa1342640:three_prime_UTR
ATAATCATTACCGGGCGCAA+AGG 0.584792 tig0005973:-90245 None:intergenic
CCATTGTACGGACGAAACGA+AGG 0.589644 tig0005973:-88263 None:intergenic
TATCATCATCCGCCGGACAT+GGG 0.589789 tig0005973:+90188 Msa1342640:CDS
CTCGGATGATGAGGATGATG+GGG 0.590885 tig0005973:-91502 None:intergenic
CTGACTACTACCTGAAGGAC+CGG 0.592024 tig0005973:-90075 None:intergenic
AGGCCTCAACTCGGATGATG+AGG 0.592496 tig0005973:-91511 None:intergenic
TTTACCGCGCCACGGTCACG+TGG 0.593039 tig0005973:-88599 None:intergenic
TTTCGATATCTTGGGAACAA+TGG 0.595556 tig0005973:-92157 None:intergenic
TGCAAGTTCAGGCCTCAACT+CGG 0.595724 tig0005973:-91520 None:intergenic
TCCTTCAGGTAGTAGTCAGA+AGG 0.595822 tig0005973:+90079 Msa1342640:CDS
CTTTGATCTTGAATAAACCA+TGG 0.599624 tig0005973:+91913 Msa1342640:three_prime_UTR
CCATAACAATTTAGCGACAC+GGG 0.599754 tig0005973:-89329 None:intergenic
AGATTGATAAGGACCAGCTG+AGG 0.601283 tig0005973:-90039 None:intergenic
TCAGAAAGGGAAGAAGCAGA+TGG 0.603283 tig0005973:-91432 None:intergenic
CATCCTCATCATCCGAGTTG+AGG 0.603884 tig0005973:+91508 Msa1342640:CDS
GATGACATTCTGGATGAAGC+AGG 0.604175 tig0005973:-91561 None:intergenic
AGATTGGTAAGGACCAGCTG+AGG 0.604660 tig0005973:-90009 None:intergenic
TGATGGGGCAAGAGTACCAA+TGG 0.604718 tig0005973:-91487 None:intergenic
ATTCCATCATCCACAGCCTG+CGG 0.605023 tig0005973:+89551 Msa1342640:CDS
TTTGGTGCACCCATGTCCGG+CGG 0.607060 tig0005973:-90197 None:intergenic
AAAGTACAAACCACTCGCAA+CGG 0.608625 tig0005973:-89356 None:intergenic
AAACTTACAAAATCCACGCT+GGG 0.608759 tig0005973:-91361 None:intergenic
TCAGCTTCATCAGGTCGTTG+TGG 0.608955 tig0005973:-88515 None:intergenic
GAGGGACCAGAGGATTGGTA+AGG 0.609630 tig0005973:-89990 None:intergenic
TGCGTCGAACCAACACTCAA+CGG 0.610522 tig0005973:-89918 None:intergenic
GGTGAATATCCAGAACGAGT+TGG 0.612989 tig0005973:+88889 Msa1342640:CDS
AGGTACGGCCGAGCTAACGA+TGG 0.613122 tig0005973:+88291 Msa1342640:CDS
ACAAATGAGCCATGTAGAAG+AGG 0.616318 tig0005973:-89711 None:intergenic
TTGGTAAGGTCCAGTATAGA+CGG 0.617115 tig0005973:-89976 None:intergenic
GGTACGGCCGAGCTAACGAT+GGG 0.619629 tig0005973:+88292 Msa1342640:CDS
GAGGGACCAGAAGATTGGTA+AGG 0.620595 tig0005973:-90020 None:intergenic
AGCAGATGGACTGTAACTCA+GGG 0.621538 tig0005973:-91418 None:intergenic
CATCATCCACAGCCTGCGGG+TGG 0.623790 tig0005973:+89555 Msa1342640:CDS
TCCATAACAATTTAGCGACA+CGG 0.624173 tig0005973:-89330 None:intergenic
CAAACTTACAAAATCCACGC+TGG 0.625616 tig0005973:-91362 None:intergenic
AGTACCTTCATCAGCACCGA+CGG 0.628033 tig0005973:-88355 None:intergenic
CCATCCACGTGACCGTGGCG+CGG 0.628156 tig0005973:+88595 Msa1342640:CDS
AATGAGCCATGTAGAAGAGG+TGG 0.628441 tig0005973:-89708 None:intergenic
TTATGGATATCCGTTGCGAG+TGG 0.629078 tig0005973:+89346 Msa1342640:CDS
ACAGAGCAGAGAGAAGAGAA+GGG 0.629461 tig0005973:+88098 Msa1342640:five_prime_UTR
AGGAACACTCATTACCTGAA+AGG 0.629964 tig0005973:+90099 Msa1342640:CDS
TCCTTCTGACTACTACCTGA+AGG 0.631642 tig0005973:-90080 None:intergenic
GATTGATAAGGACCAGCTGA+GGG 0.633302 tig0005973:-90038 None:intergenic
CATTGTACGGACGAAACGAA+GGG 0.633887 tig0005973:-88262 None:intergenic
ACAGTTTGATAAACAGGTGA+AGG 0.637901 tig0005973:-89633 None:intergenic
GTGAGAGACGGTGCTACTTG+TGG 0.638791 tig0005973:-91703 None:intergenic
TTTAACCATCCACGTGACCG+TGG 0.642316 tig0005973:+88590 Msa1342640:CDS
GAAACTGGTTCGGATTTCTG+GGG 0.642440 tig0005973:-88147 None:intergenic
GTCAGCATTACATGAAAACA+GGG 0.642817 tig0005973:+90138 Msa1342640:CDS
GATTGGTAAGGACCAGCTGA+GGG 0.643343 tig0005973:-90008 None:intergenic
TTAGCTTGAGGTGTGAGAGA+CGG 0.646603 tig0005973:-91715 None:intergenic
AGGACCAGCTGAGGGACCAG+AGG 0.646769 tig0005973:-90000 None:intergenic
TGCACTCATTATACCCAGCG+TGG 0.650258 tig0005973:+91348 Msa1342640:CDS
TGTTGTTGTGAAGGACCGGA+CGG 0.652804 tig0005973:-89663 None:intergenic
ATGTAGATATCATCATCCGC+CGG 0.657903 tig0005973:+90181 Msa1342640:CDS
AATATGGTGTACTTGTTGCG+AGG 0.663439 tig0005973:+89685 Msa1342640:CDS
TCATGCTGCAGTACTATGCG+AGG 0.670087 tig0005973:+89237 Msa1342640:intron
GAGTACTAGAAGGAAGTACA+GGG 0.672699 tig0005973:-89896 None:intergenic
CGTACAATGGAACAAAGGTA+CGG 0.672974 tig0005973:+88276 Msa1342640:exon
ATTGGCAGAGGTGAAACTTG+GGG 0.673579 tig0005973:-89603 None:intergenic
ACTTGCATCAGGATCCAGCA+AGG 0.675326 tig0005973:+91536 Msa1342640:CDS
TCGTCCGTACAATGGAACAA+AGG 0.678724 tig0005973:+88271 Msa1342640:exon
CTGTAACTCAGGGATCCCGT+AGG 0.679795 tig0005973:-91408 None:intergenic
GTATCACCATCCTAGACAGG+CGG 0.680328 tig0005973:+89292 Msa1342640:CDS
TTTAGGTTATTGGAGCTGCG+AGG 0.685804 tig0005973:+88860 Msa1342640:intron
AGAGACGGTGCTACTTGTGG+TGG 0.702854 tig0005973:-91700 None:intergenic
TGTTGTGAAGGACCGGACGG+AGG 0.705461 tig0005973:-89660 None:intergenic
TGGGGCAAGAGTACCAATGG+CGG 0.727761 tig0005973:-91484 None:intergenic
GTTATCAGGAGACTACAATG+AGG 0.728131 tig0005973:+92198 Msa1342640:three_prime_UTR
TCAGCATTACATGAAAACAG+GGG 0.793025 tig0005973:+90139 Msa1342640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATGTTTTTTTACTAA+CGG + tig0005973:88719-88738 Msa1342640:intron 10.0%
!!! TTATTTTTATGTCATATATT+TGG + tig0005973:90593-90612 Msa1342640:intron 10.0%
!!! TCACATTTTTTTTTATTTTT+GGG - tig0005973:90741-90760 None:intergenic 10.0%
!!! TTCACATTTTTTTTTATTTT+TGG - tig0005973:90742-90761 None:intergenic 10.0%
!! GTTTAATCAAATTAAAATTT+GGG - tig0005973:91038-91057 None:intergenic 10.0%
!!! CGGTAAATTTTTATTTTTTA+AGG + tig0005973:88615-88634 Msa1342640:intron 15.0%
!!! TATAATGTTTTTTTACTAAC+GGG + tig0005973:88720-88739 Msa1342640:intron 15.0%
!!! ACATTTTTTTTTATTTTTGG+GGG - tig0005973:90739-90758 None:intergenic 15.0%
!!! CACATTTTTTTTTATTTTTG+GGG - tig0005973:90740-90759 None:intergenic 15.0%
!!! TTGATGTTTTTTTTTTTTTG+AGG + tig0005973:90887-90906 Msa1342640:intron 15.0%
!!! TGATGTTTTTTTTTTTTTGA+GGG + tig0005973:90888-90907 Msa1342640:intron 15.0%
!! CGTTTAATCAAATTAAAATT+TGG - tig0005973:91039-91058 None:intergenic 15.0%
!!! TTTTTAAGGTTTTTGTTTTG+AGG + tig0005973:88629-88648 Msa1342640:intron 20.0%
!!! TTTTATTCATTGAATTCTGT+CGG + tig0005973:88755-88774 Msa1342640:intron 20.0%
!! GCAAATATAATCAATACAAA+AGG - tig0005973:89212-89231 None:intergenic 20.0%
!!! TTTTATGAAAAATCGTAACA+GGG + tig0005973:89468-89487 Msa1342640:intron 20.0%
!! GCTATTATTATTATCATCAA+AGG - tig0005973:90365-90384 None:intergenic 20.0%
!!! ATTTTTTTTTATTTTTGGGG+GGG - tig0005973:90737-90756 None:intergenic 20.0%
!!! CATTTTTTTTTATTTTTGGG+GGG - tig0005973:90738-90757 None:intergenic 20.0%
!! ACTATTGCATTAAAATACAT+CGG - tig0005973:90934-90953 None:intergenic 20.0%
!!! TTAATTTGATTAAACGATTG+TGG + tig0005973:91043-91062 Msa1342640:intron 20.0%
!! AAAAGATCAATAAAGACAAA+TGG - tig0005973:91126-91145 None:intergenic 20.0%
!!! TTTGTCTTTATTGATCTTTT+TGG + tig0005973:91126-91145 Msa1342640:intron 20.0%
!!! TTGTTGTATGTTTTATAATC+AGG + tig0005973:91314-91333 Msa1342640:intron 20.0%
!!! TGTTGTATGTTTTATAATCA+GGG + tig0005973:91315-91334 Msa1342640:intron 20.0%
!! ATCGAAAAATTGAGATAAAA+TGG - tig0005973:91770-91789 None:intergenic 20.0%
!!! ATCCTTCAATCTTTTTTTTT+TGG + tig0005973:92054-92073 Msa1342640:three_prime_UTR 20.0%
!! TACCAAAAAAAAAAGATTGA+AGG - tig0005973:92059-92078 None:intergenic 20.0%
!!! TTATTATTTTTGATACACCA+TGG + tig0005973:92238-92257 Msa1342640:three_prime_UTR 20.0%
! CTGATTGTATCTATTATTTG+AGG + tig0005973:88534-88553 Msa1342640:CDS 25.0%
!! ACATGGTGATTGAAATTTTA+GGG + tig0005973:88819-88838 Msa1342640:intron 25.0%
! ATTCAGTTTATGCTCAATTA+TGG + tig0005973:88935-88954 Msa1342640:intron 25.0%
! TTCAGTTTATGCTCAATTAT+GGG + tig0005973:88936-88955 Msa1342640:intron 25.0%
!! CTTTTATGAAAAATCGTAAC+AGG + tig0005973:89467-89486 Msa1342640:intron 25.0%
! ACAAAGTTAAGAAGTCAATT+TGG - tig0005973:90412-90431 None:intergenic 25.0%
!! AATTGACTTCTTAACTTTGT+TGG + tig0005973:90412-90431 Msa1342640:intron 25.0%
! ATTTATTATTCCTTGTATGC+AGG + tig0005973:90442-90461 Msa1342640:intron 25.0%
!!! ATTTTTAGTGAACTCTTTTC+TGG + tig0005973:90559-90578 Msa1342640:intron 25.0%
!!! TTTTTAGTGAACTCTTTTCT+GGG + tig0005973:90560-90579 Msa1342640:intron 25.0%
!!! TTTTTTTTTATTTTTGGGGG+GGG - tig0005973:90736-90755 None:intergenic 25.0%
!! ATCTGAACTTTTAAATCTCT+AGG + tig0005973:90829-90848 Msa1342640:intron 25.0%
! AATTACTTGAGCTTGAAAAA+TGG + tig0005973:90985-91004 Msa1342640:intron 25.0%
!! TCAAATTAAAATTTGGGACA+AGG - tig0005973:91032-91051 None:intergenic 25.0%
! CAAAATAATATGTGGTTTAG+TGG - tig0005973:91097-91116 None:intergenic 25.0%
! TTAATGCAATACTTTGTCTT+TGG + tig0005973:91162-91181 Msa1342640:intron 25.0%
!! GTGTTCATATAATCTTTTTG+TGG + tig0005973:91884-91903 Msa1342640:three_prime_UTR 25.0%
! TTTATTCAAGATCAAAGAGA+TGG - tig0005973:91910-91929 None:intergenic 25.0%
!! GTTGCTAAAATTTTCAAAGT+TGG - tig0005973:91939-91958 None:intergenic 25.0%
! TTATTCCCAAATGCAAAAAA+GGG - tig0005973:92106-92125 None:intergenic 25.0%
! ATTATTCCCAAATGCAAAAA+AGG - tig0005973:92107-92126 None:intergenic 25.0%
! GACAAGTAAACTGATAAAAA+GGG - tig0005973:92378-92397 None:intergenic 25.0%
! TGACAAGTAAACTGATAAAA+AGG - tig0005973:92379-92398 None:intergenic 25.0%
TGGAACAATCTGAAAAAGTT+TGG - tig0005973:88236-88255 None:intergenic 30.0%
! TTTCTTCGATTTGAGTGTAA+TGG + tig0005973:88434-88453 Msa1342640:intron 30.0%
TGTATCTATTATTTGAGGAC+AGG + tig0005973:88539-88558 Msa1342640:CDS 30.0%
! GACATGGTGATTGAAATTTT+AGG + tig0005973:88818-88837 Msa1342640:intron 30.0%
!! TTTGTGTTTGTGATTGGTTT+AGG + tig0005973:88843-88862 Msa1342640:intron 30.0%
!! TTGTGATTGGTTTAGGTTAT+TGG + tig0005973:88850-88869 Msa1342640:intron 30.0%
!! CTGTTTTAAACCACTCAAAT+TGG + tig0005973:89073-89092 Msa1342640:intron 30.0%
! ATTTGTTCCATGAGATTTTG+TGG + tig0005973:89391-89410 Msa1342640:intron 30.0%
GTGTTCCTATTATGTGAAAA+CGG + tig0005973:89500-89519 Msa1342640:CDS 30.0%
TGTTCCTATTATGTGAAAAC+GGG + tig0005973:89501-89520 Msa1342640:CDS 30.0%
AAGCAATCAAAACAAAAGTC+CGG - tig0005973:89814-89833 None:intergenic 30.0%
AGTTGAGAGATAATCATTAC+CGG - tig0005973:90257-90276 None:intergenic 30.0%
CCAAAAAATATAGTACCAGA+GGG - tig0005973:90339-90358 None:intergenic 30.0%
TCCAAAAAATATAGTACCAG+AGG - tig0005973:90340-90359 None:intergenic 30.0%
AAGAACCAACTGACAAAAAA+AGG - tig0005973:90539-90558 None:intergenic 30.0%
TGTCATATATTTGGTTACAC+AGG + tig0005973:90602-90621 Msa1342640:intron 30.0%
!!! TTTTTTTTATTTTTGGGGGG+GGG - tig0005973:90735-90754 None:intergenic 30.0%
AGTACTGCAAAAATCTTCAA+CGG - tig0005973:90855-90874 None:intergenic 30.0%
!!! AACCACATATTATTTTGACG+TGG + tig0005973:91100-91119 Msa1342640:intron 30.0%
TTGGACTTCAGGTAAATAAT+AGG + tig0005973:91181-91200 Msa1342640:intron 30.0%
! GATAAAATGGAGTGATAATG+AGG - tig0005973:91757-91776 None:intergenic 30.0%
TGAACACAAAGACAATTGAT+TGG - tig0005973:91871-91890 None:intergenic 30.0%
CTTTGATCTTGAATAAACCA+TGG + tig0005973:91913-91932 Msa1342640:three_prime_UTR 30.0%
! AAAATTTTCAAAGTTGGCCA+TGG - tig0005973:91933-91952 None:intergenic 30.0%
CAAAAAATAGACATGTGGAT+GGG - tig0005973:92025-92044 None:intergenic 30.0%
ACAAAAAATAGACATGTGGA+TGG - tig0005973:92026-92045 None:intergenic 30.0%
AAGCACAAAAAATAGACATG+TGG - tig0005973:92030-92049 None:intergenic 30.0%
!!! CAAAACCCTTTTTTGCATTT+GGG + tig0005973:92098-92117 Msa1342640:three_prime_UTR 30.0%
!! AAGTAAAATGCTTGACTTGT+TGG + tig0005973:92270-92289 Msa1342640:three_prime_UTR 30.0%
!! AGTAAAATGCTTGACTTGTT+GGG + tig0005973:92271-92290 Msa1342640:three_prime_UTR 30.0%
AAGAAACTAGAGTGAGAAAC+TGG - tig0005973:88165-88184 None:intergenic 35.0%
! TTCATTCACACGCTTTTCAT+CGG + tig0005973:88183-88202 Msa1342640:five_prime_UTR 35.0%
! ACCATTCATTCTCTGTTTTG+AGG + tig0005973:88207-88226 Msa1342640:five_prime_UTR 35.0%
!! CCATTCATTCTCTGTTTTGA+GGG + tig0005973:88208-88227 Msa1342640:five_prime_UTR 35.0%
! AGTGATTTTGTGAATGTTGC+AGG + tig0005973:88458-88477 Msa1342640:intron 35.0%
! GTGATTTTGTGAATGTTGCA+GGG + tig0005973:88459-88478 Msa1342640:intron 35.0%
TAGATACAATCAGCTTCATC+AGG - tig0005973:88527-88546 None:intergenic 35.0%
! TATTTGAGGACAGGTTTTTG+CGG + tig0005973:88548-88567 Msa1342640:CDS 35.0%
AATAAAAATTTACCGCGCCA+CGG - tig0005973:88610-88629 None:intergenic 35.0%
! GTTTTTGATGTGATTGTCTC+TGG + tig0005973:88656-88675 Msa1342640:intron 35.0%
CACTTAATTGTGTGTGATTG+AGG + tig0005973:88785-88804 Msa1342640:intron 35.0%
TAGGGATTTGTGTTTGTGAT+TGG + tig0005973:88837-88856 Msa1342640:intron 35.0%
CATAAACTGAATTAACCACC+TGG - tig0005973:88927-88946 None:intergenic 35.0%
GACGAATAACAGTGTCAATT+GGG - tig0005973:88992-89011 None:intergenic 35.0%
AGACGAATAACAGTGTCAAT+TGG - tig0005973:88993-89012 None:intergenic 35.0%
! ACTGTTATTCGTCTTTTGTG+TGG + tig0005973:88999-89018 Msa1342640:intron 35.0%
TCCATAACAATTTAGCGACA+CGG - tig0005973:89333-89352 None:intergenic 35.0%
GCATAAACCACAAAATCTCA+TGG - tig0005973:89401-89420 None:intergenic 35.0%
! TTGTCCCGTTTTCACATAAT+AGG - tig0005973:89508-89527 None:intergenic 35.0%
ACAGTTTGATAAACAGGTGA+AGG - tig0005973:89636-89655 None:intergenic 35.0%
! ATATTGTTGTTGTGAAGGAC+CGG - tig0005973:89670-89689 None:intergenic 35.0%
! ACACCATATTGTTGTTGTGA+AGG - tig0005973:89675-89694 None:intergenic 35.0%
AGCAATCAAAACAAAAGTCC+GGG - tig0005973:89813-89832 None:intergenic 35.0%
TGTCAGCATTACATGAAAAC+AGG + tig0005973:90137-90156 Msa1342640:CDS 35.0%
GTCAGCATTACATGAAAACA+GGG + tig0005973:90138-90157 Msa1342640:CDS 35.0%
TCAGCATTACATGAAAACAG+GGG + tig0005973:90139-90158 Msa1342640:CDS 35.0%
AAAACAGGGGACTGTAAATT+TGG + tig0005973:90152-90171 Msa1342640:CDS 35.0%
! ATAGGACTAAGGTTCACTTT+TGG - tig0005973:90218-90237 None:intergenic 35.0%
AAAGTGAACCTTAGTCCTAT+TGG + tig0005973:90218-90237 Msa1342640:CDS 35.0%
GTTGAGAGATAATCATTACC+GGG - tig0005973:90256-90275 None:intergenic 35.0%
!! ATCCACTTTGGTTCTTGAAT+TGG + tig0005973:90280-90299 Msa1342640:intron 35.0%
AACCAATTCAAGAACCAAAG+TGG - tig0005973:90285-90304 None:intergenic 35.0%
AATATTCTCTGATTTCCCTC+TGG + tig0005973:90321-90340 Msa1342640:intron 35.0%
!!! CCCTCTGGTACTATATTTTT+TGG + tig0005973:90336-90355 Msa1342640:intron 35.0%
GAAATTGAATCCTGCATACA+AGG - tig0005973:90455-90474 None:intergenic 35.0%
CATTGAAAACAATTCACAGC+TGG + tig0005973:90511-90530 Msa1342640:intron 35.0%
!!! TGGAACCTTTTTTTGTCAGT+TGG + tig0005973:90531-90550 Msa1342640:intron 35.0%
!!! TTTTTTTATTTTTGGGGGGG+GGG - tig0005973:90734-90753 None:intergenic 35.0%
GAATGTGTTGAGTAGTATGT+TGG + tig0005973:90789-90808 Msa1342640:intron 35.0%
TCAAGCTCAAGTAATTATGC+AGG - tig0005973:90981-91000 None:intergenic 35.0%
GATTAAACGATTGTGGAAGT+AGG + tig0005973:91050-91069 Msa1342640:intron 35.0%
ATACTTTGTCTTTGGACTTC+AGG + tig0005973:91170-91189 Msa1342640:intron 35.0%
AAACTTACAAAATCCACGCT+GGG - tig0005973:91364-91383 None:intergenic 35.0%
!!! CTTTTAAGTTATCCCAGTTC+AGG + tig0005973:91829-91848 Msa1342640:three_prime_UTR 35.0%
! CCAAATGCAAAAAAGGGTTT+TGG - tig0005973:92100-92119 None:intergenic 35.0%
!!! CCAAAACCCTTTTTTGCATT+TGG + tig0005973:92097-92116 Msa1342640:three_prime_UTR 35.0%
TTTCGATATCTTGGGAACAA+TGG - tig0005973:92160-92179 None:intergenic 35.0%
ATTGTTCCCAAGATATCGAA+AGG + tig0005973:92159-92178 Msa1342640:three_prime_UTR 35.0%
GGTAAACCTTTCGATATCTT+GGG - tig0005973:92168-92187 None:intergenic 35.0%
! TTTTACTTGTCACAACACCA+TGG - tig0005973:92258-92277 None:intergenic 35.0%
!! AGAAACTGGTTCGGATTTCT+GGG - tig0005973:88151-88170 None:intergenic 40.0%
ACTAGAGTGAGAAACTGGTT+CGG - tig0005973:88160-88179 None:intergenic 40.0%
CCCTCAAAACAGAGAATGAA+TGG - tig0005973:88211-88230 None:intergenic 40.0%
GACGAAACGAAGGGTAAAAA+TGG - tig0005973:88256-88275 None:intergenic 40.0%
CGTACCTTTGTTCCATTGTA+CGG - tig0005973:88278-88297 None:intergenic 40.0%
CGTACAATGGAACAAAGGTA+CGG + tig0005973:88276-88295 Msa1342640:exon 40.0%
TTTGTGAATGTTGCAGGGTA+TGG + tig0005973:88464-88483 Msa1342640:intron 40.0%
! GTTTTTGCGGTTATGGTTCT+AGG + tig0005973:88561-88580 Msa1342640:CDS 40.0%
! AACTCGTTCTGGATATTCAC+CGG - tig0005973:88890-88909 None:intergenic 40.0%
TGAATTAACCACCTGGCAAA+CGG - tig0005973:88920-88939 None:intergenic 40.0%
CAGTTTCGTTCCAATTTGAG+TGG - tig0005973:89086-89105 None:intergenic 40.0%
CCATAACAATTTAGCGACAC+GGG - tig0005973:89332-89351 None:intergenic 40.0%
AAAGTACAAACCACTCGCAA+CGG - tig0005973:89359-89378 None:intergenic 40.0%
AAAACGGGACAATGCAAGTT+TGG + tig0005973:89516-89535 Msa1342640:CDS 40.0%
! TGATAAACAGGTGAAGGTAC+CGG - tig0005973:89630-89649 None:intergenic 40.0%
GGCTGTACAGTTTGATAAAC+AGG - tig0005973:89642-89661 None:intergenic 40.0%
GGTCCTTCACAACAACAATA+TGG + tig0005973:89669-89688 Msa1342640:CDS 40.0%
! AATATGGTGTACTTGTTGCG+AGG + tig0005973:89685-89704 Msa1342640:CDS 40.0%
ACAAATGAGCCATGTAGAAG+AGG - tig0005973:89714-89733 None:intergenic 40.0%
ACATTACCATTGGCCCATAA+GGG - tig0005973:89743-89762 None:intergenic 40.0%
!!! AGCTTTTGAGTTCTAGATGC+AGG + tig0005973:89860-89879 Msa1342640:intron 40.0%
! GAGTACTAGAAGGAAGTACA+GGG - tig0005973:89899-89918 None:intergenic 40.0%
TTGGTAAGGTCCAGTATAGA+CGG - tig0005973:89979-89998 None:intergenic 40.0%
AGGAACACTCATTACCTGAA+AGG + tig0005973:90099-90118 Msa1342640:CDS 40.0%
ATGTAGATATCATCATCCGC+CGG + tig0005973:90181-90200 Msa1342640:CDS 40.0%
CTCTCAACTCATATCCACTT+TGG + tig0005973:90268-90287 Msa1342640:intron 40.0%
!! TAGTGAACTCTTTTCTGGGA+TGG + tig0005973:90564-90583 Msa1342640:intron 40.0%
AGGAATATGCAAGAGTAGTG+AGG + tig0005973:90673-90692 Msa1342640:intron 40.0%
AGAGTAGTGAGGAGTTTGTA+TGG + tig0005973:90684-90703 Msa1342640:intron 40.0%
GAGTAGTGAGGAGTTTGTAT+GGG + tig0005973:90685-90704 Msa1342640:intron 40.0%
!!! TTTTTTATTTTTGGGGGGGG+GGG - tig0005973:90733-90752 None:intergenic 40.0%
TGTGTTGAGTAGTATGTTGG+AGG + tig0005973:90792-90811 Msa1342640:intron 40.0%
! ATTTGGGACAAGGTGCAATA+AGG - tig0005973:91022-91041 None:intergenic 40.0%
GGCCACGTCAAAATAATATG+TGG - tig0005973:91105-91124 None:intergenic 40.0%
CAAACTTACAAAATCCACGC+TGG - tig0005973:91365-91384 None:intergenic 40.0%
! CAGCGTGGATTTTGTAAGTT+TGG + tig0005973:91363-91382 Msa1342640:CDS 40.0%
GTGCAAGTTTGATCATCCTA+CGG + tig0005973:91392-91411 Msa1342640:CDS 40.0%
TGCAAGTTTGATCATCCTAC+GGG + tig0005973:91393-91412 Msa1342640:CDS 40.0%
TGCAACTGGCATATCAGAAA+GGG - tig0005973:91448-91467 None:intergenic 40.0%
!! GCTCATTGATGATGACATTC+TGG - tig0005973:91574-91593 None:intergenic 40.0%
! CATTCACATTGCTTAGCTTG+AGG - tig0005973:91730-91749 None:intergenic 40.0%
CGATTGACTGTCTTTACTCA+TGG + tig0005973:91786-91805 Msa1342640:three_prime_UTR 40.0%
TTGACTGTCTTTACTCATGG+AGG + tig0005973:91789-91808 Msa1342640:three_prime_UTR 40.0%
TGACTGTCTTTACTCATGGA+GGG + tig0005973:91790-91809 Msa1342640:three_prime_UTR 40.0%
TTGATTGGTGCAATGACTGT+TGG - tig0005973:91856-91875 None:intergenic 40.0%
AAAGCAAGTTGCGACTGTAT+GGG - tig0005973:91961-91980 None:intergenic 40.0%
AAAAGCAAGTTGCGACTGTA+TGG - tig0005973:91962-91981 None:intergenic 40.0%
CGGTAAACCTTTCGATATCT+TGG - tig0005973:92169-92188 None:intergenic 40.0%
TACCGTGAAGAGAAGTTATC+AGG + tig0005973:92184-92203 Msa1342640:three_prime_UTR 40.0%
CTCCTGATAACTTCTCTTCA+CGG - tig0005973:92189-92208 None:intergenic 40.0%
GTTATCAGGAGACTACAATG+AGG + tig0005973:92198-92217 Msa1342640:three_prime_UTR 40.0%
! TGTGAGATCAGGTGATTTTC+TGG + tig0005973:92407-92426 Msa1342640:three_prime_UTR 40.0%
AACAGAGCAGAGAGAAGAGA+AGG + tig0005973:88097-88116 Msa1342640:five_prime_UTR 45.0%
ACAGAGCAGAGAGAAGAGAA+GGG + tig0005973:88098-88117 Msa1342640:five_prime_UTR 45.0%
!! GAAACTGGTTCGGATTTCTG+GGG - tig0005973:88150-88169 None:intergenic 45.0%
!! GAGAAACTGGTTCGGATTTC+TGG - tig0005973:88152-88171 None:intergenic 45.0%
CATTGTACGGACGAAACGAA+GGG - tig0005973:88265-88284 None:intergenic 45.0%
TCGTCCGTACAATGGAACAA+AGG + tig0005973:88271-88290 Msa1342640:exon 45.0%
! AGGACAGGTTTTTGCGGTTA+TGG + tig0005973:88554-88573 Msa1342640:CDS 45.0%
GTGTGATTGAGGATGTGCAT+TGG + tig0005973:88796-88815 Msa1342640:intron 45.0%
TTGAGGATGTGCATTGGACA+TGG + tig0005973:88802-88821 Msa1342640:intron 45.0%
! TTTAGGTTATTGGAGCTGCG+AGG + tig0005973:88860-88879 Msa1342640:intron 45.0%
GGTGAATATCCAGAACGAGT+TGG + tig0005973:88889-88908 Msa1342640:CDS 45.0%
GAATTAACCACCTGGCAAAC+GGG - tig0005973:88919-88938 None:intergenic 45.0%
! TCTAGGATGGTGATACTTGC+AGG - tig0005973:89288-89307 None:intergenic 45.0%
CAAGTATCACCATCCTAGAC+AGG + tig0005973:89289-89308 Msa1342640:CDS 45.0%
! CCCGTGTCGCTAAATTGTTA+TGG + tig0005973:89329-89348 Msa1342640:CDS 45.0%
TTATGGATATCCGTTGCGAG+TGG + tig0005973:89346-89365 Msa1342640:CDS 45.0%
!! CTGGTGATGGTGCTATCATT+TGG - tig0005973:89581-89600 None:intergenic 45.0%
ATTGGCAGAGGTGAAACTTG+GGG - tig0005973:89606-89625 None:intergenic 45.0%
CATTGGCAGAGGTGAAACTT+GGG - tig0005973:89607-89626 None:intergenic 45.0%
AATGAGCCATGTAGAAGAGG+TGG - tig0005973:89711-89730 None:intergenic 45.0%
TCTACATGGCTCATTTGTCC+AGG + tig0005973:89716-89735 Msa1342640:CDS 45.0%
CTACATGGCTCATTTGTCCA+GGG + tig0005973:89717-89736 Msa1342640:CDS 45.0%
GACATTACCATTGGCCCATA+AGG - tig0005973:89744-89763 None:intergenic 45.0%
! GGAGTACTAGAAGGAAGTAC+AGG - tig0005973:89900-89919 None:intergenic 45.0%
! ACACTCAACGGAGTACTAGA+AGG - tig0005973:89909-89928 None:intergenic 45.0%
TCTAGTACTCCGTTGAGTGT+TGG + tig0005973:89909-89928 Msa1342640:CDS 45.0%
! TTGGTTCGACGCAGCTTTAT+GGG + tig0005973:89928-89947 Msa1342640:CDS 45.0%
! GTATAGACGGTTGTTGGTGA+AGG - tig0005973:89966-89985 None:intergenic 45.0%
TCACCAACAACCGTCTATAC+TGG + tig0005973:89966-89985 Msa1342640:CDS 45.0%
GATTGATAAGGACCAGCTGA+GGG - tig0005973:90041-90060 None:intergenic 45.0%
AGATTGATAAGGACCAGCTG+AGG - tig0005973:90042-90061 None:intergenic 45.0%
GCTGGTCCTTATCAATCTTC+TGG + tig0005973:90044-90063 Msa1342640:CDS 45.0%
GAGGGACCAGAAGATTGATA+AGG - tig0005973:90053-90072 None:intergenic 45.0%
TCCTTCAGGTAGTAGTCAGA+AGG + tig0005973:90079-90098 Msa1342640:CDS 45.0%
TCCTTCTGACTACTACCTGA+AGG - tig0005973:90083-90102 None:intergenic 45.0%
AAGGAAGGCCAATAGGACTA+AGG - tig0005973:90229-90248 None:intergenic 45.0%
ATAATCATTACCGGGCGCAA+AGG - tig0005973:90248-90267 None:intergenic 45.0%
TAGCTAGCTAGCTAGCTGTA+AGG + tig0005973:90381-90400 Msa1342640:intron 45.0%
CTAGGACTCAGTTGAATGAG+TGG + tig0005973:90637-90656 Msa1342640:intron 45.0%
TGAGTGGTGTGTGCTTTACT+AGG + tig0005973:90653-90672 Msa1342640:intron 45.0%
!!! TTTTTATTTTTGGGGGGGGG+GGG - tig0005973:90732-90751 None:intergenic 45.0%
!! AGCAGATGGACTGTAACTCA+GGG - tig0005973:91421-91440 None:intergenic 45.0%
!! AAGCAGATGGACTGTAACTC+AGG - tig0005973:91422-91441 None:intergenic 45.0%
TCAGAAAGGGAAGAAGCAGA+TGG - tig0005973:91435-91454 None:intergenic 45.0%
GTGCAACTGGCATATCAGAA+AGG - tig0005973:91449-91468 None:intergenic 45.0%
ACTCGGATGATGAGGATGAT+GGG - tig0005973:91506-91525 None:intergenic 45.0%
AACTCGGATGATGAGGATGA+TGG - tig0005973:91507-91526 None:intergenic 45.0%
GATGACATTCTGGATGAAGC+AGG - tig0005973:91564-91583 None:intergenic 45.0%
!! AGCTGGCTTGACTTTGTCAA+CGG + tig0005973:91608-91627 Msa1342640:CDS 45.0%
GACTTTGTCAACGGTTGTAC+CGG + tig0005973:91617-91636 Msa1342640:CDS 45.0%
TGGGCATCTGATTGAGAAAC+CGG - tig0005973:91639-91658 None:intergenic 45.0%
! GGAACTCTGAGAAGATGGTT+GGG - tig0005973:91658-91677 None:intergenic 45.0%
CAACCATCTTCTCAGAGTTC+CGG + tig0005973:91657-91676 Msa1342640:CDS 45.0%
ACTGGGAGTTGCTAAAGAAC+CGG - tig0005973:91679-91698 None:intergenic 45.0%
! TTAGCTTGAGGTGTGAGAGA+CGG - tig0005973:91718-91737 None:intergenic 45.0%
ACTCATGGAGGGTCTCAAAT+AGG + tig0005973:91801-91820 Msa1342640:three_prime_UTR 45.0%
ATGACTGTTGGACCTGAACT+GGG - tig0005973:91844-91863 None:intergenic 45.0%
AATGACTGTTGGACCTGAAC+TGG - tig0005973:91845-91864 None:intergenic 45.0%
CTTGGGAACAATGGCAAACA+GGG - tig0005973:92151-92170 None:intergenic 45.0%
TCTTGGGAACAATGGCAAAC+AGG - tig0005973:92152-92171 None:intergenic 45.0%
TCAAGCTTTCGTGTGAGATC+AGG + tig0005973:92396-92415 Msa1342640:three_prime_UTR 45.0%
CCATTGTACGGACGAAACGA+AGG - tig0005973:88266-88285 None:intergenic 50.0%
CCTTCGTTTCGTCCGTACAA+TGG + tig0005973:88263-88282 Msa1342640:exon 50.0%
! AGTACCTTCATCAGCACCGA+CGG - tig0005973:88358-88377 None:intergenic 50.0%
GTGAATGTTGCAGGGTATGG+TGG + tig0005973:88467-88486 Msa1342640:intron 50.0%
!! TGTTGCAGGGTATGGTGGAT+TGG + tig0005973:88472-88491 Msa1342640:intron 50.0%
!! TATGGTGGATTGGTTGGTGG+TGG + tig0005973:88482-88501 Msa1342640:CDS 50.0%
TCAGCTTCATCAGGTCGTTG+TGG - tig0005973:88518-88537 None:intergenic 50.0%
!! GCGGTTATGGTTCTAGGTGT+CGG + tig0005973:88567-88586 Msa1342640:CDS 50.0%
TTTAACCATCCACGTGACCG+TGG + tig0005973:88590-88609 Msa1342640:CDS 50.0%
TCTTGCATGCATGTCAGTGC+AGG + tig0005973:89135-89154 Msa1342640:intron 50.0%
TCATGCTGCAGTACTATGCG+AGG + tig0005973:89237-89256 Msa1342640:intron 50.0%
AGGACGGGATCGTGCAAATT+TGG + tig0005973:89257-89276 Msa1342640:CDS 50.0%
GTATCACCATCCTAGACAGG+CGG + tig0005973:89292-89311 Msa1342640:CDS 50.0%
ATTCCATCATCCACAGCCTG+CGG + tig0005973:89551-89570 Msa1342640:CDS 50.0%
GAAACTTGGGGAACTGGTGA+TGG - tig0005973:89594-89613 None:intergenic 50.0%
AGAGGTGAAACTTGGGGAAC+TGG - tig0005973:89600-89619 None:intergenic 50.0%
! GCATTGGCAGAGGTGAAACT+TGG - tig0005973:89608-89627 None:intergenic 50.0%
AGTTTCACCTCTGCCAATGC+CGG + tig0005973:89608-89627 Msa1342640:CDS 50.0%
TGTTGTTGTGAAGGACCGGA+CGG - tig0005973:89666-89685 None:intergenic 50.0%
TCATTTGTCCAGGGCCCTTA+TGG + tig0005973:89726-89745 Msa1342640:CDS 50.0%
CATTTGTCCAGGGCCCTTAT+GGG + tig0005973:89727-89746 Msa1342640:CDS 50.0%
! ATGGTGGGGGACATTACCAT+TGG - tig0005973:89753-89772 None:intergenic 50.0%
! AATGGTAATGTCCCCCACCA+TGG + tig0005973:89752-89771 Msa1342640:CDS 50.0%
TGAAAAAGGGACCATGGTGG+GGG - tig0005973:89766-89785 None:intergenic 50.0%
CTGAAAAAGGGACCATGGTG+GGG - tig0005973:89767-89786 None:intergenic 50.0%
CCTGAAAAAGGGACCATGGT+GGG - tig0005973:89768-89787 None:intergenic 50.0%
AAGGGCTCCAGCCTGAAAAA+GGG - tig0005973:89779-89798 None:intergenic 50.0%
TAAGGGCTCCAGCCTGAAAA+AGG - tig0005973:89780-89799 None:intergenic 50.0%
AGCCCTTATCAGGTATGTCC+CGG + tig0005973:89792-89811 Msa1342640:intron 50.0%
GTCCGGGACATACCTGATAA+GGG - tig0005973:89797-89816 None:intergenic 50.0%
AGTCCGGGACATACCTGATA+AGG - tig0005973:89798-89817 None:intergenic 50.0%
TGCGTCGAACCAACACTCAA+CGG - tig0005973:89921-89940 None:intergenic 50.0%
!! GTTGGTTCGACGCAGCTTTA+TGG + tig0005973:89927-89946 Msa1342640:CDS 50.0%
GGTCCAGTATAGACGGTTGT+TGG - tig0005973:89972-89991 None:intergenic 50.0%
ACTGGACCTTACCAATCCTC+TGG + tig0005973:89984-90003 Msa1342640:CDS 50.0%
GATTGGTAAGGACCAGCTGA+GGG - tig0005973:90011-90030 None:intergenic 50.0%
AGATTGGTAAGGACCAGCTG+AGG - tig0005973:90012-90031 None:intergenic 50.0%
GCTGGTCCTTACCAATCTTC+TGG + tig0005973:90014-90033 Msa1342640:CDS 50.0%
GAGGGACCAGAAGATTGGTA+AGG - tig0005973:90023-90042 None:intergenic 50.0%
CAATCTTCTGGTCCCTCAAC+CGG + tig0005973:90056-90075 Msa1342640:CDS 50.0%
CTGACTACTACCTGAAGGAC+CGG - tig0005973:90078-90097 None:intergenic 50.0%
TGCTGACATTCCTGCTGATC+AGG - tig0005973:90125-90144 None:intergenic 50.0%
ATATCATCATCCGCCGGACA+TGG + tig0005973:90187-90206 Msa1342640:CDS 50.0%
TATCATCATCCGCCGGACAT+GGG + tig0005973:90188-90207 Msa1342640:CDS 50.0%
!! ACTTTTGGTGCACCCATGTC+CGG - tig0005973:90203-90222 None:intergenic 50.0%
CACAGGTCTGTCTGATCTCT+AGG + tig0005973:90619-90638 Msa1342640:intron 50.0%
!!! TTTTATTTTTGGGGGGGGGG+GGG - tig0005973:90731-90750 None:intergenic 50.0%
CGCTGGGTATAATGAGTGCA+AGG - tig0005973:91348-91367 None:intergenic 50.0%
TGCACTCATTATACCCAGCG+TGG + tig0005973:91348-91367 Msa1342640:CDS 50.0%
!! TGATGGGGCAAGAGTACCAA+TGG - tig0005973:91490-91509 None:intergenic 50.0%
CTCGGATGATGAGGATGATG+GGG - tig0005973:91505-91524 None:intergenic 50.0%
CATCCTCATCATCCGAGTTG+AGG + tig0005973:91508-91527 Msa1342640:CDS 50.0%
TGCAAGTTCAGGCCTCAACT+CGG - tig0005973:91523-91542 None:intergenic 50.0%
TTGAGGCCTGAACTTGCATC+AGG + tig0005973:91525-91544 Msa1342640:CDS 50.0%
CTGGATCCTGATGCAAGTTC+AGG - tig0005973:91534-91553 None:intergenic 50.0%
ACTTGCATCAGGATCCAGCA+AGG + tig0005973:91536-91555 Msa1342640:CDS 50.0%
!! AGCACATCGACTTCTTCAGC+TGG + tig0005973:91591-91610 Msa1342640:CDS 50.0%
! CGGAACTCTGAGAAGATGGT+TGG - tig0005973:91659-91678 None:intergenic 50.0%
! GAACCGGAACTCTGAGAAGA+TGG - tig0005973:91663-91682 None:intergenic 50.0%
GTGGATGGGCATGTGCATAA+TGG - tig0005973:92011-92030 None:intergenic 50.0%
GAGACGACCCATCGTTAGCT+CGG - tig0005973:88302-88321 None:intergenic 55.0%
!! ACTTCCGTCGGTGCTGATGA+AGG + tig0005973:88351-88370 Msa1342640:CDS 55.0%
!! GCAGGGTATGGTGGATTGGT+TGG + tig0005973:88476-88495 Msa1342640:intron 55.0%
!! GGGTATGGTGGATTGGTTGG+TGG + tig0005973:88479-88498 Msa1342640:intron 55.0%
ATTGGAGCTGCGAGGATTGC+CGG + tig0005973:88868-88887 Msa1342640:CDS 55.0%
GCTGCAGTACTATGCGAGGA+CGG + tig0005973:89241-89260 Msa1342640:intron 55.0%
CTGCAGTACTATGCGAGGAC+GGG + tig0005973:89242-89261 Msa1342640:intron 55.0%
TTCCATCATCCACAGCCTGC+GGG + tig0005973:89552-89571 Msa1342640:CDS 55.0%
!! ACAGGTGAAGGTACCGGCAT+TGG - tig0005973:89624-89643 None:intergenic 55.0%
CAAACTGTACAGCCTCCGTC+CGG + tig0005973:89648-89667 Msa1342640:CDS 55.0%
! CCCACCATGGTCCCTTTTTC+AGG + tig0005973:89765-89784 Msa1342640:CDS 55.0%
GCCTGAAAAAGGGACCATGG+TGG - tig0005973:89769-89788 None:intergenic 55.0%
CCAGCCTGAAAAAGGGACCA+TGG - tig0005973:89772-89791 None:intergenic 55.0%
!!! CCATGGTCCCTTTTTCAGGC+TGG + tig0005973:89769-89788 Msa1342640:CDS 55.0%
TTCAGGCTGGAGCCCTTATC+AGG + tig0005973:89782-89801 Msa1342640:CDS 55.0%
! GAGGGACCAGAGGATTGGTA+AGG - tig0005973:89993-90012 None:intergenic 55.0%
CAGCTGAGGGACCAGAAGAT+TGG - tig0005973:90028-90047 None:intergenic 55.0%
CAATCTTCTGGTCCCTCAGC+TGG + tig0005973:90026-90045 Msa1342640:CDS 55.0%
CTACCTGAAGGACCGGTTGA+GGG - tig0005973:90071-90090 None:intergenic 55.0%
ACTACCTGAAGGACCGGTTG+AGG - tig0005973:90072-90091 None:intergenic 55.0%
ACCTGAAAGGCCTGATCAGC+AGG + tig0005973:90112-90131 Msa1342640:CDS 55.0%
TCCTGCTGATCAGGCCTTTC+AGG - tig0005973:90116-90135 None:intergenic 55.0%
!! TATTGGCCTTCCTTTGCGCC+CGG + tig0005973:90235-90254 Msa1342640:CDS 55.0%
TCATTACCGGGCGCAAAGGA+AGG - tig0005973:90244-90263 None:intergenic 55.0%
!!! TTTATTTTTGGGGGGGGGGG+GGG - tig0005973:90730-90749 None:intergenic 55.0%
CTGTAACTCAGGGATCCCGT+AGG - tig0005973:91411-91430 None:intergenic 55.0%
CCAGTTGCACCCTATCCTGT+GGG + tig0005973:91459-91478 Msa1342640:CDS 55.0%
! ATGGCGGAACCCACAGGATA+GGG - tig0005973:91471-91490 None:intergenic 55.0%
! AATGGCGGAACCCACAGGAT+AGG - tig0005973:91472-91491 None:intergenic 55.0%
TATCCTGTGGGTTCCGCCAT+TGG + tig0005973:91471-91490 Msa1342640:CDS 55.0%
!! TGGGGCAAGAGTACCAATGG+CGG - tig0005973:91487-91506 None:intergenic 55.0%
AGGCCTCAACTCGGATGATG+AGG - tig0005973:91514-91533 None:intergenic 55.0%
!! GTGCTACTTGTGGTGGCACT+GGG - tig0005973:91696-91715 None:intergenic 55.0%
!! AGAGACGGTGCTACTTGTGG+TGG - tig0005973:91703-91722 None:intergenic 55.0%
!! GTGAGAGACGGTGCTACTTG+TGG - tig0005973:91706-91725 None:intergenic 55.0%
AGGTACGGCCGAGCTAACGA+TGG + tig0005973:88291-88310 Msa1342640:CDS 60.0%
GGTACGGCCGAGCTAACGAT+GGG + tig0005973:88292-88311 Msa1342640:CDS 60.0%
GTTGCACTCTGATCCGTCGC+CGG + tig0005973:88323-88342 Msa1342640:CDS 60.0%
ACTCTGATCCGTCGCCGGAA+TGG + tig0005973:88328-88347 Msa1342640:CDS 60.0%
ACGGAAGTCCATTCCGGCGA+CGG - tig0005973:88339-88358 None:intergenic 60.0%
! TCGCCGGAATGGACTTCCGT+CGG + tig0005973:88339-88358 Msa1342640:CDS 60.0%
! GCACCGACGGAAGTCCATTC+CGG - tig0005973:88345-88364 None:intergenic 60.0%
! ACGGGCTGTCCAACTCGTTC+TGG - tig0005973:88901-88920 None:intergenic 60.0%
AGTTGGACAGCCCGTTTGCC+AGG + tig0005973:88906-88925 Msa1342640:CDS 60.0%
TTCCTGCCGCCTGTCTAGGA+TGG - tig0005973:89301-89320 None:intergenic 60.0%
GTAGTTCCTGCCGCCTGTCT+AGG - tig0005973:89305-89324 None:intergenic 60.0%
GCTATCATTTGGCCACCCGC+AGG - tig0005973:89570-89589 None:intergenic 60.0%
!! GAAGGTACCGGCATTGGCAG+AGG - tig0005973:89618-89637 None:intergenic 60.0%
TGTTGTGAAGGACCGGACGG+AGG - tig0005973:89663-89682 None:intergenic 60.0%
GCGAGGCCACCTCTTCTACA+TGG + tig0005973:89702-89721 Msa1342640:CDS 60.0%
!! GGAAGTACAGGGCTTGCTGC+TGG - tig0005973:89888-89907 None:intergenic 60.0%
CAGCTGAGGGACCAGAGGAT+TGG - tig0005973:89998-90017 None:intergenic 60.0%
CAATCCTCTGGTCCCTCAGC+TGG + tig0005973:89996-90015 Msa1342640:CDS 60.0%
! TTTGGTGCACCCATGTCCGG+CGG - tig0005973:90200-90219 None:intergenic 60.0%
GGGCGCAAAGGAAGGCCAAT+AGG - tig0005973:90236-90255 None:intergenic 60.0%
!!! TTATTTTTGGGGGGGGGGGG+GGG - tig0005973:90729-90748 None:intergenic 60.0%
GCCAGTTGCACCCTATCCTG+TGG + tig0005973:91458-91477 Msa1342640:CDS 60.0%
CCCACAGGATAGGGTGCAAC+TGG - tig0005973:91462-91481 None:intergenic 60.0%
! GTACCAATGGCGGAACCCAC+AGG - tig0005973:91477-91496 None:intergenic 60.0%
GGATGAAGCAGGCTCCTTGC+TGG - tig0005973:91553-91572 None:intergenic 60.0%
!! GGTGCTACTTGTGGTGGCAC+TGG - tig0005973:91697-91716 None:intergenic 60.0%
TTTACCGCGCCACGGTCACG+TGG - tig0005973:88602-88621 None:intergenic 65.0%
TGGACAGCCCGTTTGCCAGG+TGG + tig0005973:88909-88928 Msa1342640:intron 65.0%
CACCATCCTAGACAGGCGGC+AGG + tig0005973:89296-89315 Msa1342640:CDS 65.0%
CACCCGCAGGCTGTGGATGA+TGG - tig0005973:89557-89576 None:intergenic 65.0%
CATCATCCACAGCCTGCGGG+TGG + tig0005973:89555-89574 Msa1342640:CDS 65.0%
ATTTGGCCACCCGCAGGCTG+TGG - tig0005973:89564-89583 None:intergenic 65.0%
CCATTGGCCCATAAGGGCCC+TGG - tig0005973:89737-89756 None:intergenic 65.0%
CCAGGGCCCTTATGGGCCAA+TGG + tig0005973:89734-89753 Msa1342640:CDS 65.0%
AGGACCAGCTGAGGGACCAG+AGG - tig0005973:90003-90022 None:intergenic 65.0%
GGTCCCTCAACCGGTCCTTC+AGG + tig0005973:90065-90084 Msa1342640:CDS 65.0%
!!! TATTTTTGGGGGGGGGGGGG+GGG - tig0005973:90728-90747 None:intergenic 65.0%
CCATCCACGTGACCGTGGCG+CGG + tig0005973:88595-88614 Msa1342640:CDS 70.0%
!! ATTTTTGGGGGGGGGGGGGG+GGG - tig0005973:90727-90746 None:intergenic 70.0%
CCGCGCCACGGTCACGTGGA+TGG - tig0005973:88598-88617 None:intergenic 75.0%
! TTGGGGGGGGGGGGGGGGGA+GGG - tig0005973:90723-90742 None:intergenic 85.0%
! TTTGGGGGGGGGGGGGGGGG+AGG - tig0005973:90724-90743 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
tig0005973 gene 88039 92466 88039 ID=Msa1342640;Name=Msa1342640
tig0005973 mRNA 88039 92466 88039 ID=Msa1342640-mRNA-1;Parent=Msa1342640;Name=Msa1342640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=243|1|1|1|1|1|7|729|500
tig0005973 exon 88039 88372 88039 ID=Msa1342640-mRNA-1:exon:3670;Parent=Msa1342640-mRNA-1
tig0005973 exon 88480 88616 88480 ID=Msa1342640-mRNA-1:exon:3671;Parent=Msa1342640-mRNA-1
tig0005973 exon 88865 88927 88865 ID=Msa1342640-mRNA-1:exon:3672;Parent=Msa1342640-mRNA-1
tig0005973 exon 89248 89367 89248 ID=Msa1342640-mRNA-1:exon:3673;Parent=Msa1342640-mRNA-1
tig0005973 exon 89489 89803 89489 ID=Msa1342640-mRNA-1:exon:3674;Parent=Msa1342640-mRNA-1
tig0005973 exon 89882 90256 89882 ID=Msa1342640-mRNA-1:exon:3675;Parent=Msa1342640-mRNA-1
tig0005973 exon 91336 92466 91336 ID=Msa1342640-mRNA-1:exon:3676;Parent=Msa1342640-mRNA-1
tig0005973 five_prime_UTR 88039 88281 88039 ID=Msa1342640-mRNA-1:five_prime_utr;Parent=Msa1342640-mRNA-1
tig0005973 CDS 88282 88372 88282 ID=Msa1342640-mRNA-1:cds;Parent=Msa1342640-mRNA-1
tig0005973 CDS 88480 88616 88480 ID=Msa1342640-mRNA-1:cds;Parent=Msa1342640-mRNA-1
tig0005973 CDS 88865 88927 88865 ID=Msa1342640-mRNA-1:cds;Parent=Msa1342640-mRNA-1
tig0005973 CDS 89248 89367 89248 ID=Msa1342640-mRNA-1:cds;Parent=Msa1342640-mRNA-1
tig0005973 CDS 89489 89803 89489 ID=Msa1342640-mRNA-1:cds;Parent=Msa1342640-mRNA-1
tig0005973 CDS 89882 90256 89882 ID=Msa1342640-mRNA-1:cds;Parent=Msa1342640-mRNA-1
tig0005973 CDS 91336 91737 91336 ID=Msa1342640-mRNA-1:cds;Parent=Msa1342640-mRNA-1
tig0005973 three_prime_UTR 91738 92466 91738 ID=Msa1342640-mRNA-1:three_prime_utr;Parent=Msa1342640-mRNA-1
Gene Sequence

>Msa1342640

ATGGAACAAAGGTACGGCCGAGCTAACGATGGGTCGTCTCAGTTGCACTCTGATCCGTCGCCGGAATGGACTTCCGTCGGTGCTGATGAAGGGTATGGTGGATTGGTTGGTGGTGGTGAATCGTATCCACAACGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTATGGTTCTAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCCGGTGAATATCCAGAACGAGTTGGACAGCCCGTTTGCCAGTACTATGCGAGGACGGGATCGTGCAAATTTGGCGCTTCCTGCAAGTATCACCATCCTAGACAGGCGGCAGGAACTACTGCTCCCGTGTCGCTAAATTGTTATGGATATCCGTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACATGTAAATTCCATCATCCACAGCCTGCGGGTGGCCAAATGATAGCACCATCACCAGTTCCCCAAGTTTCACCTCTGCCAATGCCGGTACCTTCACCTGTTTATCAAACTGTACAGCCTCCGTCCGGTCCTTCACAACAACAATATGGTGTACTTGTTGCGAGGCCACCTCTTCTACATGGCTCATTTGTCCAGGGCCCTTATGGGCCAATGGTAATGTCCCCCACCATGGTCCCTTTTTCAGGCTGGAGCCCTTATCAGGCTCCAGCAGCAAGCCCTGTACTTCCTTCTAGTACTCCGTTGAGTGTTGGTTCGACGCAGCTTTATGGGATAACTCAGCTACCTTCACCAACAACCGTCTATACTGGACCTTACCAATCCTCTGGTCCCTCAGCTGGTCCTTACCAATCTTCTGGTCCCTCAGCTGGTCCTTATCAATCTTCTGGTCCCTCAACCGGTCCTTCAGGTAGTAGTCAGAAGGAACACTCATTACCTGAAAGGCCTGATCAGCAGGAATGTCAGCATTACATGAAAACAGGGGACTGTAAATTTGGTTCTACATGTAGATATCATCATCCGCCGGACATGGGTGCACCAAAAGTGAACCTTAGTCCTATTGGCCTTCCTTTGCGCCCGGGAGCACAACCTTGCACTCATTATACCCAGCGTGGATTTTGTAAGTTTGGATCTGCGTGCAAGTTTGATCATCCTACGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTTTCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCGCCATTGGTACTCTTGCCCCATCATCCTCATCATCCGAGTTGAGGCCTGAACTTGCATCAGGATCCAGCAAGGAGCCTGCTTCATCCAGAATGTCATCATCAATGAGCACATCGACTTCTTCAGCTGGCTTGACTTTGTCAACGGTTGTACCGGTTTCTCAATCAGATGCCCAACCATCTTCTCAGAGTTCCGGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACCGTCTCTCACACCTCAAGCTAA
Protein sequence

>Msa1342640

MEQRYGRANDGSSQLHSDPSPEWTSVGADEGYGGLVGGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYARTGSCKFGASCKYHHPRQAAGTTAPVSLNCYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGGQMIAPSPVPQVSPLPMPVPSPVYQTVQPPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVMSPTMVPFSGWSPYQAPAASPVLPSSTPLSVGSTQLYGITQLPSPTTVYTGPYQSSGPSAGPYQSSGPSAGPYQSSGPSTGPSGSSQKEHSLPERPDQQECQHYMKTGDCKFGSTCRYHHPPDMGAPKVNLSPIGLPLRPGAQPCTHYTQRGFCKFGSACKFDHPTGSLSYSPSASSLSDMPVAPYPVGSAIGTLAPSSSSSELRPELASGSSKEPASSRMSSSMSTSTSSAGLTLSTVVPVSQSDAQPSSQSSGSLATPSATTSSTVSHTSS*