AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1431640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 99 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGAAATATGAAGTTTAAA+TGG 0.149590 tig0026884:+4811 None:intergenic
CTCCAGCTGGAGTCAGATTT+TGG 0.184824 tig0026884:-8095 Msa1431640:CDS
GTCCTAATTTGCAGAATAAA+TGG 0.187586 tig0026884:-5550 Msa1431640:intron
ACTTATATATGTTATGAAAT+TGG 0.220164 tig0026884:+8959 None:intergenic
AATTGGATCACAAAGTTAAA+TGG 0.272678 tig0026884:-8174 Msa1431640:CDS
TATGAGAAATTTGTGTATTT+AGG 0.278442 tig0026884:-8061 Msa1431640:CDS
ACCCGTACAGTCTTCTTCTT+AGG 0.292295 tig0026884:+5491 None:intergenic
AATTCTTGGTTTAGGTGTAT+TGG 0.299299 tig0026884:-5119 Msa1431640:three_prime_UTR
TTCAGCATCAATTCCAAATC+TGG 0.309760 tig0026884:+5738 None:intergenic
TTTGGGCAGGCATTGGGCAT+TGG 0.319761 tig0026884:-6217 Msa1431640:intron
TCTACAGTGGACTCCAGATT+TGG 0.325328 tig0026884:-5751 Msa1431640:intron
TGTAAGCTGGCTAGGTCTAA+TGG 0.330328 tig0026884:-6431 Msa1431640:CDS
TTGGGCAGGCATTGGGCATT+GGG 0.331705 tig0026884:-6216 Msa1431640:intron
GTTCGAAAATTGCTGTTAAG+AGG 0.349529 tig0026884:+5276 None:intergenic
TTTCCATCGACAGACTTCTT+TGG 0.350193 tig0026884:-5372 Msa1431640:intron
TATAGTAGTGCATGTGGATT+AGG 0.356282 tig0026884:-4912 Msa1431640:three_prime_UTR
TATAGTAGTGCATGTGGATT+AGG 0.356282 tig0026884:-4974 Msa1431640:three_prime_UTR
GAAGACGCTGTGGCAGACTA+TGG 0.357365 tig0026884:-8127 Msa1431640:CDS
TTCTGCTGTGCCTGCTGTGA+TGG 0.363537 tig0026884:-5318 Msa1431640:CDS
TGTGTCTTTGGGCAGGCATT+GGG 0.368874 tig0026884:-6223 Msa1431640:intron
TAAATCAGAATCCATCCTTA+AGG 0.383863 tig0026884:-5676 Msa1431640:CDS
GTAAGCTGGCTAGGTCTAAT+GGG 0.391663 tig0026884:-6430 Msa1431640:CDS
GAAGTCTGTGGCATTGGAAT+TGG 0.392646 tig0026884:-8191 Msa1431640:CDS
AATTTGTGTATTTAGGCATT+GGG 0.396459 tig0026884:-8054 Msa1431640:CDS
TCCTAATTTGCAGAATAAAT+GGG 0.404078 tig0026884:-5549 Msa1431640:intron
ACCAGGCTCAGCAGAAGTAC+TGG 0.405633 tig0026884:+5343 None:intergenic
AGGAAATATGAAGTTTAAAT+GGG 0.410225 tig0026884:+4812 None:intergenic
CAAAACTCAACCACTCCTTC+CGG 0.418932 tig0026884:+5172 None:intergenic
AAATTTGTGTATTTAGGCAT+TGG 0.429814 tig0026884:-8055 Msa1431640:CDS
GGGAAGCCCGTCAGCTAGCT+AGG 0.436166 tig0026884:-6352 Msa1431640:CDS
TTGCTCGTGAATGTGATTCA+TGG 0.439097 tig0026884:-5089 Msa1431640:three_prime_UTR
CCCAGTACTTCTGCTGAGCC+TGG 0.444702 tig0026884:-5344 Msa1431640:CDS
CAAGATGAAGTCTGTGGCAT+TGG 0.445821 tig0026884:-8197 Msa1431640:CDS
CTTGTCTGCTGCAGCTTAAG+TGG 0.445957 tig0026884:-6460 Msa1431640:intron
AGAGGCAGCAACAAATTCTC+AGG 0.446494 tig0026884:-8848 Msa1431640:intron
GGCTAGGTCTAATGGGTTTG+AGG 0.450577 tig0026884:-6423 Msa1431640:CDS
GAGAGATCAGAGACGGTTAG+AGG 0.451933 tig0026884:-8866 Msa1431640:five_prime_UTR
CTAGGTCTAATGCAGGGACT+CGG 0.461461 tig0026884:-6334 Msa1431640:CDS
ACAAACAAAGTTCCTCTACT+TGG 0.463453 tig0026884:+8890 None:intergenic
AGCCAAAATCTGACTCCAGC+TGG 0.478708 tig0026884:+8093 None:intergenic
TGGTGTATATACTATATAGT+GGG 0.494321 tig0026884:-5069 Msa1431640:three_prime_UTR
ATGGTGTATATACTATATAG+TGG 0.495581 tig0026884:-5070 Msa1431640:three_prime_UTR
GAGCAAAATCAACATCCTTA+AGG 0.503039 tig0026884:+5661 None:intergenic
GGGAAGCTTGTAAGCTGGCT+AGG 0.506798 tig0026884:-6439 Msa1431640:CDS
GCAGGCACAGCAGAAGTACC+AGG 0.511520 tig0026884:+5326 None:intergenic
TAGGTCTAATGCAGGGACTC+GGG 0.513819 tig0026884:-6333 Msa1431640:CDS
TAACATATATAAGTTCCTCT+TGG 0.523535 tig0026884:-8950 Msa1431640:five_prime_UTR
TACTGCGAATGCAGGTATCA+AGG 0.530740 tig0026884:-5246 Msa1431640:CDS
CATTGGGGAACGTGAACTAA+AGG 0.533880 tig0026884:-8038 Msa1431640:intron
CAGATGGTTACTGCGAATGC+AGG 0.537426 tig0026884:-5254 Msa1431640:CDS
ATCCTAAGAAGAAGACTGTA+CGG 0.543822 tig0026884:-5493 Msa1431640:CDS
ATCCTCCCCATGTATATCTA+CGG 0.546575 tig0026884:+5710 None:intergenic
GAGTAGCTAGCCGGAAGGAG+TGG 0.546791 tig0026884:-5182 Msa1431640:three_prime_UTR
CACAGAACAATAACACTCAC+TGG 0.547496 tig0026884:+5002 None:intergenic
TTGTCTGCTGCAGCTTAAGT+GGG 0.549453 tig0026884:-6459 Msa1431640:intron
ATGGATCTGATGACTCCAGC+TGG 0.553415 tig0026884:-8108 Msa1431640:CDS
CAGCTAGCTAGGTCTAATGC+AGG 0.557805 tig0026884:-6341 Msa1431640:CDS
GATGGGAAAGAAGTATAGAG+AGG 0.558505 tig0026884:+9068 None:intergenic
AAAAGCACAAAAGCTGAAGA+GGG 0.560388 tig0026884:-6372 Msa1431640:CDS
AAAGATGCCGTAGATATACA+TGG 0.565113 tig0026884:-5717 Msa1431640:CDS
GTTAAGAGGTTCACAACAGC+AGG 0.566554 tig0026884:+5290 None:intergenic
CCTAATTTGCAGAATAAATG+GGG 0.566683 tig0026884:-5548 Msa1431640:intron
TTTGTACATAGCAGCAGTGG+TGG 0.567461 tig0026884:+4864 None:intergenic
CCAGGCTCAGCAGAAGTACT+GGG 0.570943 tig0026884:+5344 None:intergenic
CATCATGAGTCCATTTGTGA+AGG 0.572977 tig0026884:+5637 None:intergenic
AAAATCAACATCCTTAAGGA+TGG 0.578151 tig0026884:+5665 None:intergenic
TGAAGGATAGAAAGTGAAGG+TGG 0.579969 tig0026884:-5208 Msa1431640:exon
GCAGGCACATCCATCACAGC+AGG 0.580554 tig0026884:+5308 None:intergenic
CAGTGAGTGTTATTGTTCTG+TGG 0.584724 tig0026884:-5001 Msa1431640:three_prime_UTR
GAATGAGTGTTATTGTTCTG+TGG 0.587586 tig0026884:-4939 Msa1431640:three_prime_UTR
AAGATGCTTGTTATCAGAGA+GGG 0.590205 tig0026884:-8988 Msa1431640:five_prime_UTR
TGCTCTGCACTTCCAAGTAG+AGG 0.593164 tig0026884:-8902 Msa1431640:five_prime_UTR
CATTGGGAAACGTGAACCAA+AGG 0.594101 tig0026884:-6200 Msa1431640:intron
ATCATGAGTCCATTTGTGAA+GGG 0.594860 tig0026884:+5638 None:intergenic
TCCTAAGAAGAAGACTGTAC+GGG 0.599111 tig0026884:-5492 Msa1431640:CDS
TAAGTGGGAAGCTTGTAAGC+TGG 0.605300 tig0026884:-6444 Msa1431640:CDS
AGGTGGAAAGAGTAGCTAGC+CGG 0.605811 tig0026884:-5191 Msa1431640:three_prime_UTR
ATGGACTCATGATGCACTGA+GGG 0.605994 tig0026884:-5628 Msa1431640:intron
GTTTGTCGAGAGATCAGAGA+CGG 0.606401 tig0026884:-8873 Msa1431640:five_prime_UTR
ATTTGTGTATTTAGGCATTG+GGG 0.609636 tig0026884:-8053 Msa1431640:CDS
GGTTAATGAAAACATCAGAA+AGG 0.612698 tig0026884:-5471 Msa1431640:intron
AGGTCTAATGCAGGGACTCG+GGG 0.616145 tig0026884:-6332 Msa1431640:CDS
TGCCGTAGATATACATGGGG+AGG 0.620440 tig0026884:-5712 Msa1431640:CDS
GTCTCTGCTTGAAGACGCTG+TGG 0.621674 tig0026884:-8137 Msa1431640:CDS
TCATGAGTCCATTTGTGAAG+GGG 0.624080 tig0026884:+5639 None:intergenic
GGTGTCTATAGTAGTGCATG+TGG 0.631425 tig0026884:-4918 Msa1431640:three_prime_UTR
GGTGTCTATAGTAGTGCATG+TGG 0.631425 tig0026884:-4980 Msa1431640:three_prime_UTR
CATTAGACCTAGCTAGCTGA+CGG 0.635381 tig0026884:+6345 None:intergenic
AAGATGCCGTAGATATACAT+GGG 0.637221 tig0026884:-5716 Msa1431640:CDS
ATTAGACCTAGCTAGCTGAC+GGG 0.642091 tig0026884:+6346 None:intergenic
GGTGTATATACTATATAGTG+GGG 0.649578 tig0026884:-5068 Msa1431640:three_prime_UTR
AGCTAGCTAGGTCTAATGCA+GGG 0.656329 tig0026884:-6340 Msa1431640:CDS
CAAGATGCTTGTTATCAGAG+AGG 0.661100 tig0026884:-8989 Msa1431640:five_prime_UTR
ACTCTAGAAAGTTCGCCAAG+AGG 0.661447 tig0026884:+8935 None:intergenic
GGAAAGAGTAGCTAGCCGGA+AGG 0.663905 tig0026884:-5187 Msa1431640:three_prime_UTR
CTAATTTGCAGAATAAATGG+GGG 0.682270 tig0026884:-5547 Msa1431640:intron
AGATCGCAAGATGAAGTCTG+TGG 0.683681 tig0026884:-8203 Msa1431640:CDS
AATGGACTCATGATGCACTG+AGG 0.724301 tig0026884:-5629 Msa1431640:CDS
AGATGCCGTAGATATACATG+GGG 0.731909 tig0026884:-5715 Msa1431640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAGAAAAAATAATAAA+AGG + tig0026884:4822-4841 None:intergenic 10.0%
!!! TTATTTTATTTTTTACCTTT+GGG + tig0026884:7648-7667 None:intergenic 10.0%
!!! TTTATTTTATTTTTTACCTT+TGG + tig0026884:7649-7668 None:intergenic 10.0%
!! ACTTATATATGTTATGAAAT+TGG + tig0026884:4980-4999 None:intergenic 15.0%
!! AATTGTTATAGATTAATTAG+TGG - tig0026884:7147-7166 Msa1431640:intron 15.0%
!!! TATTTTATTTTTTACCTTTG+GGG + tig0026884:7647-7666 None:intergenic 15.0%
!! AATAAACAAACTACTATATA+TGG - tig0026884:7663-7682 Msa1431640:intron 15.0%
!!! ATAAGTTTTAAAAATACAGA+TGG - tig0026884:8497-8516 Msa1431640:intron 15.0%
!!! TAAGTTTTAAAAATACAGAT+GGG - tig0026884:8498-8517 Msa1431640:intron 15.0%
!! AAACAAATAAAAGAAAAACG+AGG + tig0026884:5499-5518 None:intergenic 20.0%
!! GTAAATATTGAAACAAAAGA+AGG + tig0026884:5526-5545 None:intergenic 20.0%
!!! ATCGAAAATTATTTTCGTTT+TGG - tig0026884:5581-5600 Msa1431640:intron 20.0%
!! TATGAGAAATTTGTGTATTT+AGG - tig0026884:5875-5894 Msa1431640:intron 20.0%
!!! TTTACTTTTTATACGTGAAT+TGG - tig0026884:5964-5983 Msa1431640:intron 20.0%
!!! TAATATCGATTCAAAATTTG+AGG + tig0026884:6080-6099 None:intergenic 20.0%
!! TATAAAAAAGAACATAGCTT+GGG - tig0026884:6270-6289 Msa1431640:intron 20.0%
!!! AAATGTGTTTAAGATTGAAA+AGG + tig0026884:6433-6452 None:intergenic 20.0%
!!! ATTTTGTTATTGGAAAAGAT+TGG + tig0026884:6649-6668 None:intergenic 20.0%
!!! TGAACAAGTTATTTTGTTAT+TGG + tig0026884:6659-6678 None:intergenic 20.0%
!!! TATTTTCTTCTTCATAACAA+AGG + tig0026884:6754-6773 None:intergenic 20.0%
!!! TGGTTCTTAAATTTAGTTTA+TGG + tig0026884:6838-6857 None:intergenic 20.0%
!!! AATAAAGCAAGTTAGTTTTT+TGG + tig0026884:7298-7317 None:intergenic 20.0%
!! TTGAATTATGTGATAGAAAA+TGG - tig0026884:8064-8083 Msa1431640:CDS 20.0%
!!! ACTAAAAAAAGATAATGGTT+GGG - tig0026884:8414-8433 Msa1431640:intron 20.0%
!! CAAGAATTTAGAAAAATCAT+AGG + tig0026884:8805-8824 None:intergenic 20.0%
!!! CTATGATTTTTCTAAATTCT+TGG - tig0026884:8803-8822 Msa1431640:intron 20.0%
!!! TTTTTCTAAATTCTTGGTTT+AGG - tig0026884:8809-8828 Msa1431640:intron 20.0%
!!! TGTTCTTAATTTCTTGTTTT+AGG - tig0026884:8893-8912 Msa1431640:five_prime_UTR 20.0%
!!! TTTTAGTTGTTAGTAGTGAT+GGG + tig0026884:4888-4907 None:intergenic 25.0%
! TAACATATATAAGTTCCTCT+TGG - tig0026884:4986-5005 Msa1431640:three_prime_UTR 25.0%
!!! TTTCATCATTGATTCGAATT+AGG + tig0026884:5369-5388 None:intergenic 25.0%
!! GAGAATAATTTTACGAATCT+AGG - tig0026884:5391-5410 Msa1431640:intron 25.0%
!! TTTTGTGTCAATTAGGTTTT+CGG - tig0026884:5420-5439 Msa1431640:intron 25.0%
! CAAAACGAAAAATAATGCAT+CGG + tig0026884:5474-5493 None:intergenic 25.0%
! AATTGGATCACAAAGTTAAA+TGG - tig0026884:5762-5781 Msa1431640:intron 25.0%
! AAATTTGTGTATTTAGGCAT+TGG - tig0026884:5881-5900 Msa1431640:intron 25.0%
! AATTTGTGTATTTAGGCATT+GGG - tig0026884:5882-5901 Msa1431640:intron 25.0%
! ATTGTGTATAATAGCTAGAA+TGG + tig0026884:6164-6183 None:intergenic 25.0%
! GTATAAAAAAGAACATAGCT+TGG - tig0026884:6269-6288 Msa1431640:intron 25.0%
!! TAATCATTCATTTGTTGCAA+AGG - tig0026884:6320-6339 Msa1431640:CDS 25.0%
!! ATATGACATTTTGTTGCAAT+TGG + tig0026884:6720-6739 None:intergenic 25.0%
!!! GTTTATGGTTTTTTTGTTGT+AGG + tig0026884:6823-6842 None:intergenic 25.0%
!! AAACTTTTTGAATTATGCCT+CGG - tig0026884:7088-7107 Msa1431640:intron 25.0%
! ATTGAATGAAAAATGAACAC+AGG - tig0026884:7112-7131 Msa1431640:intron 25.0%
! TGTGATTGATTAGAATGTTA+AGG - tig0026884:7367-7386 Msa1431640:intron 25.0%
!! TTGTTCTAATTTTGTGTCTT+TGG - tig0026884:7701-7720 Msa1431640:intron 25.0%
!! TGTTCTAATTTTGTGTCTTT+GGG - tig0026884:7702-7721 Msa1431640:intron 25.0%
!!! TTATTTTTACCTTGCTCAAA+AGG + tig0026884:7869-7888 None:intergenic 25.0%
! ATATGAAAATTACATGAACC+TGG - tig0026884:7924-7943 Msa1431640:intron 25.0%
!! GTAGTTTACTATTAGTTTGA+TGG - tig0026884:7332-7351 Msa1431640:intron 25.0%
! GATTAAAATGCTATCTATGA+TGG - tig0026884:8086-8105 Msa1431640:CDS 25.0%
! AAACAAACTATCTATCTATG+AGG - tig0026884:8118-8137 Msa1431640:CDS 25.0%
! AACAAACTATCTATCTATGA+GGG - tig0026884:8119-8138 Msa1431640:CDS 25.0%
!! TATCTGTTCTGATTTTTACA+TGG - tig0026884:8159-8178 Msa1431640:CDS 25.0%
! AGAAAAACACTATAATGAGA+AGG + tig0026884:8351-8370 None:intergenic 25.0%
!! TCCTAATTTGCAGAATAAAT+GGG - tig0026884:8387-8406 Msa1431640:intron 25.0%
!! GACTAAAAAAAGATAATGGT+TGG - tig0026884:8413-8432 Msa1431640:intron 25.0%
! ATGGTGTATATACTATATAG+TGG - tig0026884:8866-8885 Msa1431640:five_prime_UTR 25.0%
! TGGTGTATATACTATATAGT+GGG - tig0026884:8867-8886 Msa1431640:five_prime_UTR 25.0%
!! GTTTAAATGGGAAAAGTTTT+TGG + tig0026884:9115-9134 None:intergenic 25.0%
!!! GTTTTAGTTGTTAGTAGTGA+TGG + tig0026884:4889-4908 None:intergenic 30.0%
! GTTTCTGTTTTGTGTCAATT+AGG - tig0026884:5413-5432 Msa1431640:intron 30.0%
!! CGATGCATTATTTTTCGTTT+TGG - tig0026884:5472-5491 Msa1431640:CDS 30.0%
! ATTACAGTGTATGCTTTGTT+AGG - tig0026884:5705-5724 Msa1431640:CDS 30.0%
! ATTTGTGTATTTAGGCATTG+GGG - tig0026884:5883-5902 Msa1431640:intron 30.0%
! ATAGCTAGAATGGATTCATT+TGG + tig0026884:6154-6173 None:intergenic 30.0%
!!! TCGCAGCAACATTTTTTTAT+AGG + tig0026884:6240-6259 None:intergenic 30.0%
GCAACAAATGAATGATTAAC+AGG + tig0026884:6318-6337 None:intergenic 30.0%
CTACAGTGAAGAAATGAAAT+CGG + tig0026884:6388-6407 None:intergenic 30.0%
CTAACATAGTACTTTAACAG+AGG - tig0026884:6527-6546 Msa1431640:intron 30.0%
TTCTTCTTCTTCTTCTTTGT+TGG + tig0026884:6858-6877 None:intergenic 30.0%
!! TCATTTTTCATTCAATACCG+AGG + tig0026884:7108-7127 None:intergenic 30.0%
!!! AAGTTAGTTTTTTGGCAAGT+TGG + tig0026884:7290-7309 None:intergenic 30.0%
TTGTGATGATTAGAAGGTTA+AGG - tig0026884:8023-8042 Msa1431640:intron 30.0%
! TTTTACATGGTATTCTACAG+TGG - tig0026884:8172-8191 Msa1431640:CDS 30.0%
TAAATCAGAATCCATCCTTA+AGG - tig0026884:8260-8279 Msa1431640:intron 30.0%
AAAATCAACATCCTTAAGGA+TGG + tig0026884:8274-8293 None:intergenic 30.0%
ACACTATAATGAGAAGGAAA+AGG + tig0026884:8345-8364 None:intergenic 30.0%
! GTCCTAATTTGCAGAATAAA+TGG - tig0026884:8386-8405 Msa1431640:intron 30.0%
! CCTAATTTGCAGAATAAATG+GGG - tig0026884:8388-8407 Msa1431640:intron 30.0%
! CTAATTTGCAGAATAAATGG+GGG - tig0026884:8389-8408 Msa1431640:intron 30.0%
GGGAGACTAAAAAAAGATAA+TGG - tig0026884:8409-8428 Msa1431640:intron 30.0%
! AAAAAGATAATGGTTGGGTT+AGG - tig0026884:8419-8438 Msa1431640:intron 30.0%
GGTTAATGAAAACATCAGAA+AGG - tig0026884:8465-8484 Msa1431640:intron 30.0%
TTTAAAAATACAGATGGGAC+TGG - tig0026884:8503-8522 Msa1431640:intron 30.0%
!! TTTTGAAGGATAGAAAGTGA+AGG - tig0026884:8725-8744 Msa1431640:intron 30.0%
AATTCTTGGTTTAGGTGTAT+TGG - tig0026884:8817-8836 Msa1431640:intron 30.0%
GGTGTATATACTATATAGTG+GGG - tig0026884:8868-8887 Msa1431640:five_prime_UTR 30.0%
!! AAGATGCTTGTTATCAGAGA+GGG - tig0026884:4948-4967 Msa1431640:three_prime_UTR 35.0%
ACAAACAAAGTTCCTCTACT+TGG + tig0026884:5049-5068 None:intergenic 35.0%
TCCAAGAATCTCACAATCAA+TGG - tig0026884:5125-5144 Msa1431640:three_prime_UTR 35.0%
! ATCGCGATTACGAATTGTTT+TGG - tig0026884:5326-5345 Msa1431640:CDS 35.0%
CGGATATACACTAATTGCAT+CGG + tig0026884:5454-5473 None:intergenic 35.0%
! ATGGATTCATTTGGTGATAG+AGG + tig0026884:6145-6164 None:intergenic 35.0%
! TTTTCATTATCTCCCAAACC+TGG - tig0026884:6186-6205 Msa1431640:intron 35.0%
! TTTTCTCTATCTCCAGGTTT+GGG + tig0026884:6201-6220 None:intergenic 35.0%
! TTGGGTTGTTTGAGTAAGTT+AGG - tig0026884:6288-6307 Msa1431640:intron 35.0%
! TTGAAAAGGAAAAGCACACA+TGG + tig0026884:6419-6438 None:intergenic 35.0%
CAAAGCTGGATATTTGTTCT+AGG + tig0026884:6567-6586 None:intergenic 35.0%
AGGAGGATATTTGTTCTATG+TGG + tig0026884:6595-6614 None:intergenic 35.0%
AGATTGGAAGAGATAAGGAT+CGG + tig0026884:6633-6652 None:intergenic 35.0%
GGAAAAGATTGGAAGAGATA+AGG + tig0026884:6638-6657 None:intergenic 35.0%
! GACATTTTGTTGCAATTGGA+GGG + tig0026884:6716-6735 None:intergenic 35.0%
! TGACATTTTGTTGCAATTGG+AGG + tig0026884:6717-6736 None:intergenic 35.0%
! AAAAAGCACAAAAGCTGAAG+AGG - tig0026884:7563-7582 Msa1431640:intron 35.0%
! AAAAGCACAAAAGCTGAAGA+GGG - tig0026884:7564-7583 Msa1431640:intron 35.0%
AATCATTGAAAAAGCCCCAA+AGG - tig0026884:7630-7649 Msa1431640:intron 35.0%
AGAAGAGAGCAAATTACCTT+TGG + tig0026884:7755-7774 None:intergenic 35.0%
! TTATTCATGCCTTTTGAGCA+AGG - tig0026884:7857-7876 Msa1431640:intron 35.0%
! TGCTGTTTGTGATGATTAGA+AGG - tig0026884:8017-8036 Msa1431640:intron 35.0%
TTCAGCATCAATTCCAAATC+TGG + tig0026884:8201-8220 None:intergenic 35.0%
AAAGATGCCGTAGATATACA+TGG - tig0026884:8219-8238 Msa1431640:intron 35.0%
AAGATGCCGTAGATATACAT+GGG - tig0026884:8220-8239 Msa1431640:intron 35.0%
GAGCAAAATCAACATCCTTA+AGG + tig0026884:8278-8297 None:intergenic 35.0%
ATCATGAGTCCATTTGTGAA+GGG + tig0026884:8301-8320 None:intergenic 35.0%
CCCCATTTATTCTGCAAATT+AGG + tig0026884:8391-8410 None:intergenic 35.0%
ATCCTAAGAAGAAGACTGTA+CGG - tig0026884:8443-8462 Msa1431640:intron 35.0%
! GTTCGAAAATTGCTGTTAAG+AGG + tig0026884:8663-8682 None:intergenic 35.0%
! AACAGCAATTTTCGAACAGA+TGG - tig0026884:8666-8685 Msa1431640:intron 35.0%
! GGAAATTGTGACTCTTTTGA+AGG - tig0026884:8711-8730 Msa1431640:intron 35.0%
TATAGTAGTGCATGTGGATT+AGG - tig0026884:8962-8981 Msa1431640:five_prime_UTR 35.0%
! GAATGAGTGTTATTGTTCTG+TGG - tig0026884:8997-9016 Msa1431640:five_prime_UTR 35.0%
TATAGTAGTGCATGTGGATT+AGG - tig0026884:8962-8981 Msa1431640:five_prime_UTR 35.0%
! AATTTTGTACATAGCAGCAG+TGG + tig0026884:9078-9097 None:intergenic 35.0%
! GATGGGAAAGAAGTATAGAG+AGG + tig0026884:4871-4890 None:intergenic 40.0%
!! CAAGATGCTTGTTATCAGAG+AGG - tig0026884:4947-4966 Msa1431640:three_prime_UTR 40.0%
GATTGTGAGATTCTTGGAGA+AGG + tig0026884:5123-5142 None:intergenic 40.0%
! GCCATTGATTGTGAGATTCT+TGG + tig0026884:5129-5148 None:intergenic 40.0%
! TGTGTCAATTAGGTTTTCGG+TGG - tig0026884:5423-5442 Msa1431640:intron 40.0%
! CTTTTCTCTATCTCCAGGTT+TGG + tig0026884:6202-6221 None:intergenic 40.0%
! TTGAGCTTTTCTCTATCTCC+AGG + tig0026884:6207-6226 None:intergenic 40.0%
GAAGAAGAAGAAGATGCCAA+AGG - tig0026884:6869-6888 Msa1431640:intron 40.0%
AAGATGCCAAAGGTAGAGAT+AGG - tig0026884:6879-6898 Msa1431640:intron 40.0%
AGAAGAAGAAGAAGCTACAC+TGG - tig0026884:6930-6949 Msa1431640:intron 40.0%
!!! CACTGGTTTTCAACGTTGTA+TGG - tig0026884:6947-6966 Msa1431640:intron 40.0%
TCAACGTTGTATGGTGTGAA+TGG - tig0026884:6956-6975 Msa1431640:intron 40.0%
! CTAATTTTGTGTCTTTGGGC+AGG - tig0026884:7706-7725 Msa1431640:intron 40.0%
AGATGCCGTAGATATACATG+GGG - tig0026884:8221-8240 Msa1431640:intron 40.0%
ATCCTCCCCATGTATATCTA+CGG + tig0026884:8229-8248 None:intergenic 40.0%
! ATTTTGCTCCCCTTCACAAA+TGG - tig0026884:8289-8308 Msa1431640:intron 40.0%
TCATGAGTCCATTTGTGAAG+GGG + tig0026884:8300-8319 None:intergenic 40.0%
CATCATGAGTCCATTTGTGA+AGG + tig0026884:8302-8321 None:intergenic 40.0%
TCCTAAGAAGAAGACTGTAC+GGG - tig0026884:8444-8463 Msa1431640:intron 40.0%
TTTCCATCGACAGACTTCTT+TGG - tig0026884:8564-8583 Msa1431640:intron 40.0%
TGAAGGATAGAAAGTGAAGG+TGG - tig0026884:8728-8747 Msa1431640:intron 40.0%
TTGCTCGTGAATGTGATTCA+TGG - tig0026884:8847-8866 Msa1431640:intron 40.0%
CACAGAACAATAACACTCAC+TGG + tig0026884:8937-8956 None:intergenic 40.0%
! CAGTGAGTGTTATTGTTCTG+TGG - tig0026884:8935-8954 Msa1431640:five_prime_UTR 40.0%
! ACTCTAGAAAGTTCGCCAAG+AGG + tig0026884:5004-5023 None:intergenic 45.0%
GTTTGTCGAGAGATCAGAGA+CGG - tig0026884:5063-5082 Msa1431640:three_prime_UTR 45.0%
AGAGGCAGCAACAAATTCTC+AGG - tig0026884:5088-5107 Msa1431640:three_prime_UTR 45.0%
AGATCGCAAGATGAAGTCTG+TGG - tig0026884:5733-5752 Msa1431640:CDS 45.0%
CAAGATGAAGTCTGTGGCAT+TGG - tig0026884:5739-5758 Msa1431640:CDS 45.0%
! GAAGTCTGTGGCATTGGAAT+TGG - tig0026884:5745-5764 Msa1431640:CDS 45.0%
CATTGGGGAACGTGAACTAA+AGG - tig0026884:5898-5917 Msa1431640:intron 45.0%
TCTATGTGGTGACACAAAGC+TGG + tig0026884:6581-6600 None:intergenic 45.0%
ATGCCAAAGGTAGAGATAGG+TGG - tig0026884:6882-6901 Msa1431640:intron 45.0%
ACGTTGTATGGTGTGAATGG+AGG - tig0026884:6959-6978 Msa1431640:intron 45.0%
CGTTGTATGGTGTGAATGGA+GGG - tig0026884:6960-6979 Msa1431640:intron 45.0%
ATGGTGTGAATGGAGGGAAA+TGG - tig0026884:6966-6985 Msa1431640:intron 45.0%
TTGTCTGCTGCAGCTTAAGT+GGG - tig0026884:7477-7496 Msa1431640:intron 45.0%
TAAGTGGGAAGCTTGTAAGC+TGG - tig0026884:7492-7511 Msa1431640:intron 45.0%
TGTAAGCTGGCTAGGTCTAA+TGG - tig0026884:7505-7524 Msa1431640:intron 45.0%
GTAAGCTGGCTAGGTCTAAT+GGG - tig0026884:7506-7525 Msa1431640:intron 45.0%
ATTAGACCTAGCTAGCTGAC+GGG + tig0026884:7593-7612 None:intergenic 45.0%
CATTAGACCTAGCTAGCTGA+CGG + tig0026884:7594-7613 None:intergenic 45.0%
AGCTAGCTAGGTCTAATGCA+GGG - tig0026884:7596-7615 Msa1431640:intron 45.0%
CATTGGGAAACGTGAACCAA+AGG - tig0026884:7736-7755 Msa1431640:intron 45.0%
ACCTGGCTACATGAACTTGA+AGG - tig0026884:7941-7960 Msa1431640:intron 45.0%
CCTGGCTACATGAACTTGAA+GGG - tig0026884:7942-7961 Msa1431640:intron 45.0%
! TCTACAGTGGACTCCAGATT+TGG - tig0026884:8185-8204 Msa1431640:CDS 45.0%
! AATGGACTCATGATGCACTG+AGG - tig0026884:8307-8326 Msa1431640:intron 45.0%
ATGGACTCATGATGCACTGA+GGG - tig0026884:8308-8327 Msa1431640:intron 45.0%
ACCCGTACAGTCTTCTTCTT+AGG + tig0026884:8448-8467 None:intergenic 45.0%
! AATACAGATGGGACTGGTAC+TGG - tig0026884:8509-8528 Msa1431640:intron 45.0%
CATCCAAAGAAGTCTGTCGA+TGG + tig0026884:8570-8589 None:intergenic 45.0%
GTTAAGAGGTTCACAACAGC+AGG + tig0026884:8649-8668 None:intergenic 45.0%
TACTGCGAATGCAGGTATCA+AGG - tig0026884:8690-8709 Msa1431640:intron 45.0%
CAAAACTCAACCACTCCTTC+CGG + tig0026884:8767-8786 None:intergenic 45.0%
GGTGTCTATAGTAGTGCATG+TGG - tig0026884:8956-8975 Msa1431640:five_prime_UTR 45.0%
GGTGTCTATAGTAGTGCATG+TGG - tig0026884:8956-8975 Msa1431640:five_prime_UTR 45.0%
TTTGTACATAGCAGCAGTGG+TGG + tig0026884:9075-9094 None:intergenic 45.0%
TGCTCTGCACTTCCAAGTAG+AGG - tig0026884:5034-5053 Msa1431640:three_prime_UTR 50.0%
GAGAGATCAGAGACGGTTAG+AGG - tig0026884:5070-5089 Msa1431640:three_prime_UTR 50.0%
ATGGATCTGATGACTCCAGC+TGG - tig0026884:5828-5847 Msa1431640:intron 50.0%
! CTCCAGCTGGAGTCAGATTT+TGG - tig0026884:5841-5860 Msa1431640:intron 50.0%
AGCCAAAATCTGACTCCAGC+TGG + tig0026884:5846-5865 None:intergenic 50.0%
! ATCGGCTGGGTTGACAAAGA+AGG + tig0026884:6615-6634 None:intergenic 50.0%
GGAAGAGATAAGGATCGGCT+GGG + tig0026884:6628-6647 None:intergenic 50.0%
TGGAAGAGATAAGGATCGGC+TGG + tig0026884:6629-6648 None:intergenic 50.0%
CCACCACCTATCTCTACCTT+TGG + tig0026884:6888-6907 None:intergenic 50.0%
CCAAAGGTAGAGATAGGTGG+TGG - tig0026884:6885-6904 Msa1431640:intron 50.0%
! AAGGTAGAGATAGGTGGTGG+AGG - tig0026884:6888-6907 Msa1431640:intron 50.0%
CACTTAAGCTGCAGCAGACA+AGG + tig0026884:7478-7497 None:intergenic 50.0%
CTTGTCTGCTGCAGCTTAAG+TGG - tig0026884:7476-7495 Msa1431640:intron 50.0%
!! GGCTAGGTCTAATGGGTTTG+AGG - tig0026884:7513-7532 Msa1431640:intron 50.0%
CAGCTAGCTAGGTCTAATGC+AGG - tig0026884:7595-7614 Msa1431640:intron 50.0%
CTAGGTCTAATGCAGGGACT+CGG - tig0026884:7602-7621 Msa1431640:intron 50.0%
TAGGTCTAATGCAGGGACTC+GGG - tig0026884:7603-7622 Msa1431640:intron 50.0%
TTGTGTCTTTGGGCAGGCAT+TGG - tig0026884:7712-7731 Msa1431640:intron 50.0%
TGTGTCTTTGGGCAGGCATT+GGG - tig0026884:7713-7732 Msa1431640:intron 50.0%
! CCCTTCAAGTTCATGTAGCC+AGG + tig0026884:7945-7964 None:intergenic 50.0%
TGCCGTAGATATACATGGGG+AGG - tig0026884:8224-8243 Msa1431640:intron 50.0%
CAGATGGTTACTGCGAATGC+AGG - tig0026884:8682-8701 Msa1431640:intron 50.0%
AGGTGGAAAGAGTAGCTAGC+CGG - tig0026884:8745-8764 Msa1431640:intron 50.0%
GTCTCTGCTTGAAGACGCTG+TGG - tig0026884:5799-5818 Msa1431640:intron 55.0%
GAAGACGCTGTGGCAGACTA+TGG - tig0026884:5809-5828 Msa1431640:intron 55.0%
! GGCTGGGTTGACAAAGAAGG+AGG + tig0026884:6612-6631 None:intergenic 55.0%
!! GTAGAGATAGGTGGTGGAGG+AGG - tig0026884:6891-6910 Msa1431640:intron 55.0%
GGGAAGCTTGTAAGCTGGCT+AGG - tig0026884:7497-7516 Msa1431640:intron 55.0%
AGGTCTAATGCAGGGACTCG+GGG - tig0026884:7604-7623 Msa1431640:intron 55.0%
!! TTTGGGCAGGCATTGGGCAT+TGG - tig0026884:7719-7738 Msa1431640:intron 55.0%
!! TTGGGCAGGCATTGGGCATT+GGG - tig0026884:7720-7739 Msa1431640:intron 55.0%
!! CCAGGCTCAGCAGAAGTACT+GGG + tig0026884:8595-8614 None:intergenic 55.0%
! ACCAGGCTCAGCAGAAGTAC+TGG + tig0026884:8596-8615 None:intergenic 55.0%
TTCTGCTGTGCCTGCTGTGA+TGG - tig0026884:8618-8637 Msa1431640:intron 55.0%
GGAAAGAGTAGCTAGCCGGA+AGG - tig0026884:8749-8768 Msa1431640:intron 55.0%
!! GAGATAGGTGGTGGAGGAGG+AGG - tig0026884:6894-6913 Msa1431640:intron 60.0%
CCCAGTACTTCTGCTGAGCC+TGG - tig0026884:8592-8611 Msa1431640:intron 60.0%
!! GCAGGCACAGCAGAAGTACC+AGG + tig0026884:8613-8632 None:intergenic 60.0%
GCAGGCACATCCATCACAGC+AGG + tig0026884:8631-8650 None:intergenic 60.0%
GAGTAGCTAGCCGGAAGGAG+TGG - tig0026884:8754-8773 Msa1431640:intron 60.0%
GGGAAGCCCGTCAGCTAGCT+AGG - tig0026884:7584-7603 Msa1431640:intron 65.0%
Chromosome Type Strat End Strand Name
tig0026884 gene 4813 9145 4813 ID=Msa1431640;Name=Msa1431640
tig0026884 mRNA 4813 9145 4813 ID=Msa1431640-mRNA-1;Parent=Msa1431640;Name=Msa1431640-mRNA-1;_AED=0.27;_eAED=0.27;_QI=298|1|1|1|0.83|0.85|7|401|258
tig0026884 exon 4813 5381 4813 ID=Msa1431640-mRNA-1:exon:7689;Parent=Msa1431640-mRNA-1
tig0026884 exon 5472 5558 5472 ID=Msa1431640-mRNA-1:exon:7688;Parent=Msa1431640-mRNA-1
tig0026884 exon 5629 5766 5629 ID=Msa1431640-mRNA-1:exon:7687;Parent=Msa1431640-mRNA-1
tig0026884 exon 6201 6230 6201 ID=Msa1431640-mRNA-1:exon:7686;Parent=Msa1431640-mRNA-1
tig0026884 exon 6307 6468 6307 ID=Msa1431640-mRNA-1:exon:7685;Parent=Msa1431640-mRNA-1
tig0026884 exon 8039 8231 8039 ID=Msa1431640-mRNA-1:exon:7684;Parent=Msa1431640-mRNA-1
tig0026884 exon 8849 9145 8849 ID=Msa1431640-mRNA-1:exon:7683;Parent=Msa1431640-mRNA-1
tig0026884 five_prime_UTR 8849 9145 8849 ID=Msa1431640-mRNA-1:five_prime_utr;Parent=Msa1431640-mRNA-1
tig0026884 five_prime_UTR 8231 8231 8231 ID=Msa1431640-mRNA-1:five_prime_utr;Parent=Msa1431640-mRNA-1
tig0026884 CDS 8039 8230 8039 ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1
tig0026884 CDS 6307 6468 6307 ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1
tig0026884 CDS 6201 6230 6201 ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1
tig0026884 CDS 5629 5766 5629 ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1
tig0026884 CDS 5472 5558 5472 ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1
tig0026884 CDS 5214 5381 5214 ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1
tig0026884 three_prime_UTR 4813 5213 4813 ID=Msa1431640-mRNA-1:three_prime_utr;Parent=Msa1431640-mRNA-1
Gene Sequence

>Msa1431640

ATGAAAGATCGCAAGATGAAGTCTGTGGCATTGGAATTGGATCACAAAGTTAAATGGAGCACGCTTAGAGAGTCTCTGCTTGAAGACGCTGTGGCAGACTATGGATCTGATGACTCCAGCTGGAGTCAGATTTTGGCTGATGAGAAGTATGAGAAATTTGTGTATTTAGGCATTGGGGAACGTGAACTAAAGCTTAAGTGGGAAGCTTGTAAGCTGGCTAGGTCTAATGGGTTTGAGGATGAAAGTAGCGAAGAAGCTGAGAAGAAAAAAGCACAAAAGCTGAAGAGGGAAGCCCGTCAGCTAGCTAGGTCTAATGCAGGGACTCGGGGTGTAATCATTGAAAAAGCCCCAAAGGCATTGGGCATTGGGAAACGTGAACCAAAGTGGACTCCAGATTTGGAATTGATGCTGAAAGATGCCGTAGATATACATGGGGAGGATCATGCTGATTTTAAATCAGAATCCATCCTTAAGGATGTTGATTTTGCTCCCCTTCACAAATGGACTCATGATGCACTGAGGAATAAATGGGGGAGACTAAAAAAAGATAATGGTTGGGTTAGGAATCCTAAGAAGAAGACTGTACGGGTTAATGAAAACATCAGAAAGACTTCTTTGGATGTGCCCAGTACTTCTGCTGAGCCTGGTACTTCTGCTGTGCCTGCTGTGATGGATGTGCCTGCTGTTGTGAACCTCTTAACAGCAATTTTCGAACAGATGGTTACTGCGAATGCAGGTATCAAGGAAATTGTGACTCTTTTGAAGGATAGAAAGTGA

Protein sequence

>Msa1431640

MKDRKMKSVALELDHKVKWSTLRESLLEDAVADYGSDDSSWSQILADEKYEKFVYLGIGERELKLKWEACKLARSNGFEDESSEEAEKKKAQKLKREARQLARSNAGTRGVIIEKAPKALGIGKREPKWTPDLELMLKDAVDIHGEDHADFKSESILKDVDFAPLHKWTHDALRNKWGRLKKDNGWVRNPKKKTVRVNENIRKTSLDVPSTSAEPGTSAVPAVMDVPAVVNLLTAIFEQMVTANAGIKEIVTLLKDRK*