Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0043730 | Msa1431640 | 0.801500 | 8.743370e-49 | -8.615850e-47 |
Msa1423910 | Msa1431640 | 0.810097 | 1.365236e-50 | -8.615850e-47 |
Msa0735310 | Msa1431640 | 0.830849 | 2.329071e-55 | -8.615850e-47 |
Msa0814320 | Msa1431640 | 0.808559 | 2.918886e-50 | -8.615850e-47 |
Msa0815990 | Msa1431640 | 0.802232 | 6.186785e-49 | -8.615850e-47 |
Msa0139990 | Msa1431640 | 0.802515 | 5.408691e-49 | -8.615850e-47 |
Msa0182570 | Msa1431640 | 0.801063 | 1.074188e-48 | -8.615850e-47 |
Msa0392940 | Msa1431640 | 0.803259 | 3.796098e-49 | -8.615850e-47 |
Msa0429290 | Msa1431640 | 0.802945 | 4.409309e-49 | -8.615850e-47 |
Msa0465550 | Msa1431640 | 0.800566 | 1.357272e-48 | -8.615850e-47 |
Msa0475580 | Msa1431640 | 0.807037 | 6.147589e-50 | -8.615850e-47 |
Msa0242760 | Msa1431640 | 0.801672 | 8.062691e-49 | -8.615850e-47 |
Msa1176980 | Msa1431640 | 0.800449 | 1.434056e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 99 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGAAATATGAAGTTTAAA+TGG | 0.149590 | tig0026884:+4811 | None:intergenic |
CTCCAGCTGGAGTCAGATTT+TGG | 0.184824 | tig0026884:-8095 | Msa1431640:CDS |
GTCCTAATTTGCAGAATAAA+TGG | 0.187586 | tig0026884:-5550 | Msa1431640:intron |
ACTTATATATGTTATGAAAT+TGG | 0.220164 | tig0026884:+8959 | None:intergenic |
AATTGGATCACAAAGTTAAA+TGG | 0.272678 | tig0026884:-8174 | Msa1431640:CDS |
TATGAGAAATTTGTGTATTT+AGG | 0.278442 | tig0026884:-8061 | Msa1431640:CDS |
ACCCGTACAGTCTTCTTCTT+AGG | 0.292295 | tig0026884:+5491 | None:intergenic |
AATTCTTGGTTTAGGTGTAT+TGG | 0.299299 | tig0026884:-5119 | Msa1431640:three_prime_UTR |
TTCAGCATCAATTCCAAATC+TGG | 0.309760 | tig0026884:+5738 | None:intergenic |
TTTGGGCAGGCATTGGGCAT+TGG | 0.319761 | tig0026884:-6217 | Msa1431640:intron |
TCTACAGTGGACTCCAGATT+TGG | 0.325328 | tig0026884:-5751 | Msa1431640:intron |
TGTAAGCTGGCTAGGTCTAA+TGG | 0.330328 | tig0026884:-6431 | Msa1431640:CDS |
TTGGGCAGGCATTGGGCATT+GGG | 0.331705 | tig0026884:-6216 | Msa1431640:intron |
GTTCGAAAATTGCTGTTAAG+AGG | 0.349529 | tig0026884:+5276 | None:intergenic |
TTTCCATCGACAGACTTCTT+TGG | 0.350193 | tig0026884:-5372 | Msa1431640:intron |
TATAGTAGTGCATGTGGATT+AGG | 0.356282 | tig0026884:-4912 | Msa1431640:three_prime_UTR |
TATAGTAGTGCATGTGGATT+AGG | 0.356282 | tig0026884:-4974 | Msa1431640:three_prime_UTR |
GAAGACGCTGTGGCAGACTA+TGG | 0.357365 | tig0026884:-8127 | Msa1431640:CDS |
TTCTGCTGTGCCTGCTGTGA+TGG | 0.363537 | tig0026884:-5318 | Msa1431640:CDS |
TGTGTCTTTGGGCAGGCATT+GGG | 0.368874 | tig0026884:-6223 | Msa1431640:intron |
TAAATCAGAATCCATCCTTA+AGG | 0.383863 | tig0026884:-5676 | Msa1431640:CDS |
GTAAGCTGGCTAGGTCTAAT+GGG | 0.391663 | tig0026884:-6430 | Msa1431640:CDS |
GAAGTCTGTGGCATTGGAAT+TGG | 0.392646 | tig0026884:-8191 | Msa1431640:CDS |
AATTTGTGTATTTAGGCATT+GGG | 0.396459 | tig0026884:-8054 | Msa1431640:CDS |
TCCTAATTTGCAGAATAAAT+GGG | 0.404078 | tig0026884:-5549 | Msa1431640:intron |
ACCAGGCTCAGCAGAAGTAC+TGG | 0.405633 | tig0026884:+5343 | None:intergenic |
AGGAAATATGAAGTTTAAAT+GGG | 0.410225 | tig0026884:+4812 | None:intergenic |
CAAAACTCAACCACTCCTTC+CGG | 0.418932 | tig0026884:+5172 | None:intergenic |
AAATTTGTGTATTTAGGCAT+TGG | 0.429814 | tig0026884:-8055 | Msa1431640:CDS |
GGGAAGCCCGTCAGCTAGCT+AGG | 0.436166 | tig0026884:-6352 | Msa1431640:CDS |
TTGCTCGTGAATGTGATTCA+TGG | 0.439097 | tig0026884:-5089 | Msa1431640:three_prime_UTR |
CCCAGTACTTCTGCTGAGCC+TGG | 0.444702 | tig0026884:-5344 | Msa1431640:CDS |
CAAGATGAAGTCTGTGGCAT+TGG | 0.445821 | tig0026884:-8197 | Msa1431640:CDS |
CTTGTCTGCTGCAGCTTAAG+TGG | 0.445957 | tig0026884:-6460 | Msa1431640:intron |
AGAGGCAGCAACAAATTCTC+AGG | 0.446494 | tig0026884:-8848 | Msa1431640:intron |
GGCTAGGTCTAATGGGTTTG+AGG | 0.450577 | tig0026884:-6423 | Msa1431640:CDS |
GAGAGATCAGAGACGGTTAG+AGG | 0.451933 | tig0026884:-8866 | Msa1431640:five_prime_UTR |
CTAGGTCTAATGCAGGGACT+CGG | 0.461461 | tig0026884:-6334 | Msa1431640:CDS |
ACAAACAAAGTTCCTCTACT+TGG | 0.463453 | tig0026884:+8890 | None:intergenic |
AGCCAAAATCTGACTCCAGC+TGG | 0.478708 | tig0026884:+8093 | None:intergenic |
TGGTGTATATACTATATAGT+GGG | 0.494321 | tig0026884:-5069 | Msa1431640:three_prime_UTR |
ATGGTGTATATACTATATAG+TGG | 0.495581 | tig0026884:-5070 | Msa1431640:three_prime_UTR |
GAGCAAAATCAACATCCTTA+AGG | 0.503039 | tig0026884:+5661 | None:intergenic |
GGGAAGCTTGTAAGCTGGCT+AGG | 0.506798 | tig0026884:-6439 | Msa1431640:CDS |
GCAGGCACAGCAGAAGTACC+AGG | 0.511520 | tig0026884:+5326 | None:intergenic |
TAGGTCTAATGCAGGGACTC+GGG | 0.513819 | tig0026884:-6333 | Msa1431640:CDS |
TAACATATATAAGTTCCTCT+TGG | 0.523535 | tig0026884:-8950 | Msa1431640:five_prime_UTR |
TACTGCGAATGCAGGTATCA+AGG | 0.530740 | tig0026884:-5246 | Msa1431640:CDS |
CATTGGGGAACGTGAACTAA+AGG | 0.533880 | tig0026884:-8038 | Msa1431640:intron |
CAGATGGTTACTGCGAATGC+AGG | 0.537426 | tig0026884:-5254 | Msa1431640:CDS |
ATCCTAAGAAGAAGACTGTA+CGG | 0.543822 | tig0026884:-5493 | Msa1431640:CDS |
ATCCTCCCCATGTATATCTA+CGG | 0.546575 | tig0026884:+5710 | None:intergenic |
GAGTAGCTAGCCGGAAGGAG+TGG | 0.546791 | tig0026884:-5182 | Msa1431640:three_prime_UTR |
CACAGAACAATAACACTCAC+TGG | 0.547496 | tig0026884:+5002 | None:intergenic |
TTGTCTGCTGCAGCTTAAGT+GGG | 0.549453 | tig0026884:-6459 | Msa1431640:intron |
ATGGATCTGATGACTCCAGC+TGG | 0.553415 | tig0026884:-8108 | Msa1431640:CDS |
CAGCTAGCTAGGTCTAATGC+AGG | 0.557805 | tig0026884:-6341 | Msa1431640:CDS |
GATGGGAAAGAAGTATAGAG+AGG | 0.558505 | tig0026884:+9068 | None:intergenic |
AAAAGCACAAAAGCTGAAGA+GGG | 0.560388 | tig0026884:-6372 | Msa1431640:CDS |
AAAGATGCCGTAGATATACA+TGG | 0.565113 | tig0026884:-5717 | Msa1431640:CDS |
GTTAAGAGGTTCACAACAGC+AGG | 0.566554 | tig0026884:+5290 | None:intergenic |
CCTAATTTGCAGAATAAATG+GGG | 0.566683 | tig0026884:-5548 | Msa1431640:intron |
TTTGTACATAGCAGCAGTGG+TGG | 0.567461 | tig0026884:+4864 | None:intergenic |
CCAGGCTCAGCAGAAGTACT+GGG | 0.570943 | tig0026884:+5344 | None:intergenic |
CATCATGAGTCCATTTGTGA+AGG | 0.572977 | tig0026884:+5637 | None:intergenic |
AAAATCAACATCCTTAAGGA+TGG | 0.578151 | tig0026884:+5665 | None:intergenic |
TGAAGGATAGAAAGTGAAGG+TGG | 0.579969 | tig0026884:-5208 | Msa1431640:exon |
GCAGGCACATCCATCACAGC+AGG | 0.580554 | tig0026884:+5308 | None:intergenic |
CAGTGAGTGTTATTGTTCTG+TGG | 0.584724 | tig0026884:-5001 | Msa1431640:three_prime_UTR |
GAATGAGTGTTATTGTTCTG+TGG | 0.587586 | tig0026884:-4939 | Msa1431640:three_prime_UTR |
AAGATGCTTGTTATCAGAGA+GGG | 0.590205 | tig0026884:-8988 | Msa1431640:five_prime_UTR |
TGCTCTGCACTTCCAAGTAG+AGG | 0.593164 | tig0026884:-8902 | Msa1431640:five_prime_UTR |
CATTGGGAAACGTGAACCAA+AGG | 0.594101 | tig0026884:-6200 | Msa1431640:intron |
ATCATGAGTCCATTTGTGAA+GGG | 0.594860 | tig0026884:+5638 | None:intergenic |
TCCTAAGAAGAAGACTGTAC+GGG | 0.599111 | tig0026884:-5492 | Msa1431640:CDS |
TAAGTGGGAAGCTTGTAAGC+TGG | 0.605300 | tig0026884:-6444 | Msa1431640:CDS |
AGGTGGAAAGAGTAGCTAGC+CGG | 0.605811 | tig0026884:-5191 | Msa1431640:three_prime_UTR |
ATGGACTCATGATGCACTGA+GGG | 0.605994 | tig0026884:-5628 | Msa1431640:intron |
GTTTGTCGAGAGATCAGAGA+CGG | 0.606401 | tig0026884:-8873 | Msa1431640:five_prime_UTR |
ATTTGTGTATTTAGGCATTG+GGG | 0.609636 | tig0026884:-8053 | Msa1431640:CDS |
GGTTAATGAAAACATCAGAA+AGG | 0.612698 | tig0026884:-5471 | Msa1431640:intron |
AGGTCTAATGCAGGGACTCG+GGG | 0.616145 | tig0026884:-6332 | Msa1431640:CDS |
TGCCGTAGATATACATGGGG+AGG | 0.620440 | tig0026884:-5712 | Msa1431640:CDS |
GTCTCTGCTTGAAGACGCTG+TGG | 0.621674 | tig0026884:-8137 | Msa1431640:CDS |
TCATGAGTCCATTTGTGAAG+GGG | 0.624080 | tig0026884:+5639 | None:intergenic |
GGTGTCTATAGTAGTGCATG+TGG | 0.631425 | tig0026884:-4918 | Msa1431640:three_prime_UTR |
GGTGTCTATAGTAGTGCATG+TGG | 0.631425 | tig0026884:-4980 | Msa1431640:three_prime_UTR |
CATTAGACCTAGCTAGCTGA+CGG | 0.635381 | tig0026884:+6345 | None:intergenic |
AAGATGCCGTAGATATACAT+GGG | 0.637221 | tig0026884:-5716 | Msa1431640:CDS |
ATTAGACCTAGCTAGCTGAC+GGG | 0.642091 | tig0026884:+6346 | None:intergenic |
GGTGTATATACTATATAGTG+GGG | 0.649578 | tig0026884:-5068 | Msa1431640:three_prime_UTR |
AGCTAGCTAGGTCTAATGCA+GGG | 0.656329 | tig0026884:-6340 | Msa1431640:CDS |
CAAGATGCTTGTTATCAGAG+AGG | 0.661100 | tig0026884:-8989 | Msa1431640:five_prime_UTR |
ACTCTAGAAAGTTCGCCAAG+AGG | 0.661447 | tig0026884:+8935 | None:intergenic |
GGAAAGAGTAGCTAGCCGGA+AGG | 0.663905 | tig0026884:-5187 | Msa1431640:three_prime_UTR |
CTAATTTGCAGAATAAATGG+GGG | 0.682270 | tig0026884:-5547 | Msa1431640:intron |
AGATCGCAAGATGAAGTCTG+TGG | 0.683681 | tig0026884:-8203 | Msa1431640:CDS |
AATGGACTCATGATGCACTG+AGG | 0.724301 | tig0026884:-5629 | Msa1431640:CDS |
AGATGCCGTAGATATACATG+GGG | 0.731909 | tig0026884:-5715 | Msa1431640:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACATAGAAAAAATAATAAA+AGG | + | tig0026884:4822-4841 | None:intergenic | 10.0% |
!!! | TTATTTTATTTTTTACCTTT+GGG | + | tig0026884:7648-7667 | None:intergenic | 10.0% |
!!! | TTTATTTTATTTTTTACCTT+TGG | + | tig0026884:7649-7668 | None:intergenic | 10.0% |
!! | ACTTATATATGTTATGAAAT+TGG | + | tig0026884:4980-4999 | None:intergenic | 15.0% |
!! | AATTGTTATAGATTAATTAG+TGG | - | tig0026884:7147-7166 | Msa1431640:intron | 15.0% |
!!! | TATTTTATTTTTTACCTTTG+GGG | + | tig0026884:7647-7666 | None:intergenic | 15.0% |
!! | AATAAACAAACTACTATATA+TGG | - | tig0026884:7663-7682 | Msa1431640:intron | 15.0% |
!!! | ATAAGTTTTAAAAATACAGA+TGG | - | tig0026884:8497-8516 | Msa1431640:intron | 15.0% |
!!! | TAAGTTTTAAAAATACAGAT+GGG | - | tig0026884:8498-8517 | Msa1431640:intron | 15.0% |
!! | AAACAAATAAAAGAAAAACG+AGG | + | tig0026884:5499-5518 | None:intergenic | 20.0% |
!! | GTAAATATTGAAACAAAAGA+AGG | + | tig0026884:5526-5545 | None:intergenic | 20.0% |
!!! | ATCGAAAATTATTTTCGTTT+TGG | - | tig0026884:5581-5600 | Msa1431640:intron | 20.0% |
!! | TATGAGAAATTTGTGTATTT+AGG | - | tig0026884:5875-5894 | Msa1431640:intron | 20.0% |
!!! | TTTACTTTTTATACGTGAAT+TGG | - | tig0026884:5964-5983 | Msa1431640:intron | 20.0% |
!!! | TAATATCGATTCAAAATTTG+AGG | + | tig0026884:6080-6099 | None:intergenic | 20.0% |
!! | TATAAAAAAGAACATAGCTT+GGG | - | tig0026884:6270-6289 | Msa1431640:intron | 20.0% |
!!! | AAATGTGTTTAAGATTGAAA+AGG | + | tig0026884:6433-6452 | None:intergenic | 20.0% |
!!! | ATTTTGTTATTGGAAAAGAT+TGG | + | tig0026884:6649-6668 | None:intergenic | 20.0% |
!!! | TGAACAAGTTATTTTGTTAT+TGG | + | tig0026884:6659-6678 | None:intergenic | 20.0% |
!!! | TATTTTCTTCTTCATAACAA+AGG | + | tig0026884:6754-6773 | None:intergenic | 20.0% |
!!! | TGGTTCTTAAATTTAGTTTA+TGG | + | tig0026884:6838-6857 | None:intergenic | 20.0% |
!!! | AATAAAGCAAGTTAGTTTTT+TGG | + | tig0026884:7298-7317 | None:intergenic | 20.0% |
!! | TTGAATTATGTGATAGAAAA+TGG | - | tig0026884:8064-8083 | Msa1431640:CDS | 20.0% |
!!! | ACTAAAAAAAGATAATGGTT+GGG | - | tig0026884:8414-8433 | Msa1431640:intron | 20.0% |
!! | CAAGAATTTAGAAAAATCAT+AGG | + | tig0026884:8805-8824 | None:intergenic | 20.0% |
!!! | CTATGATTTTTCTAAATTCT+TGG | - | tig0026884:8803-8822 | Msa1431640:intron | 20.0% |
!!! | TTTTTCTAAATTCTTGGTTT+AGG | - | tig0026884:8809-8828 | Msa1431640:intron | 20.0% |
!!! | TGTTCTTAATTTCTTGTTTT+AGG | - | tig0026884:8893-8912 | Msa1431640:five_prime_UTR | 20.0% |
!!! | TTTTAGTTGTTAGTAGTGAT+GGG | + | tig0026884:4888-4907 | None:intergenic | 25.0% |
! | TAACATATATAAGTTCCTCT+TGG | - | tig0026884:4986-5005 | Msa1431640:three_prime_UTR | 25.0% |
!!! | TTTCATCATTGATTCGAATT+AGG | + | tig0026884:5369-5388 | None:intergenic | 25.0% |
!! | GAGAATAATTTTACGAATCT+AGG | - | tig0026884:5391-5410 | Msa1431640:intron | 25.0% |
!! | TTTTGTGTCAATTAGGTTTT+CGG | - | tig0026884:5420-5439 | Msa1431640:intron | 25.0% |
! | CAAAACGAAAAATAATGCAT+CGG | + | tig0026884:5474-5493 | None:intergenic | 25.0% |
! | AATTGGATCACAAAGTTAAA+TGG | - | tig0026884:5762-5781 | Msa1431640:intron | 25.0% |
! | AAATTTGTGTATTTAGGCAT+TGG | - | tig0026884:5881-5900 | Msa1431640:intron | 25.0% |
! | AATTTGTGTATTTAGGCATT+GGG | - | tig0026884:5882-5901 | Msa1431640:intron | 25.0% |
! | ATTGTGTATAATAGCTAGAA+TGG | + | tig0026884:6164-6183 | None:intergenic | 25.0% |
! | GTATAAAAAAGAACATAGCT+TGG | - | tig0026884:6269-6288 | Msa1431640:intron | 25.0% |
!! | TAATCATTCATTTGTTGCAA+AGG | - | tig0026884:6320-6339 | Msa1431640:CDS | 25.0% |
!! | ATATGACATTTTGTTGCAAT+TGG | + | tig0026884:6720-6739 | None:intergenic | 25.0% |
!!! | GTTTATGGTTTTTTTGTTGT+AGG | + | tig0026884:6823-6842 | None:intergenic | 25.0% |
!! | AAACTTTTTGAATTATGCCT+CGG | - | tig0026884:7088-7107 | Msa1431640:intron | 25.0% |
! | ATTGAATGAAAAATGAACAC+AGG | - | tig0026884:7112-7131 | Msa1431640:intron | 25.0% |
! | TGTGATTGATTAGAATGTTA+AGG | - | tig0026884:7367-7386 | Msa1431640:intron | 25.0% |
!! | TTGTTCTAATTTTGTGTCTT+TGG | - | tig0026884:7701-7720 | Msa1431640:intron | 25.0% |
!! | TGTTCTAATTTTGTGTCTTT+GGG | - | tig0026884:7702-7721 | Msa1431640:intron | 25.0% |
!!! | TTATTTTTACCTTGCTCAAA+AGG | + | tig0026884:7869-7888 | None:intergenic | 25.0% |
! | ATATGAAAATTACATGAACC+TGG | - | tig0026884:7924-7943 | Msa1431640:intron | 25.0% |
!! | GTAGTTTACTATTAGTTTGA+TGG | - | tig0026884:7332-7351 | Msa1431640:intron | 25.0% |
! | GATTAAAATGCTATCTATGA+TGG | - | tig0026884:8086-8105 | Msa1431640:CDS | 25.0% |
! | AAACAAACTATCTATCTATG+AGG | - | tig0026884:8118-8137 | Msa1431640:CDS | 25.0% |
! | AACAAACTATCTATCTATGA+GGG | - | tig0026884:8119-8138 | Msa1431640:CDS | 25.0% |
!! | TATCTGTTCTGATTTTTACA+TGG | - | tig0026884:8159-8178 | Msa1431640:CDS | 25.0% |
! | AGAAAAACACTATAATGAGA+AGG | + | tig0026884:8351-8370 | None:intergenic | 25.0% |
!! | TCCTAATTTGCAGAATAAAT+GGG | - | tig0026884:8387-8406 | Msa1431640:intron | 25.0% |
!! | GACTAAAAAAAGATAATGGT+TGG | - | tig0026884:8413-8432 | Msa1431640:intron | 25.0% |
! | ATGGTGTATATACTATATAG+TGG | - | tig0026884:8866-8885 | Msa1431640:five_prime_UTR | 25.0% |
! | TGGTGTATATACTATATAGT+GGG | - | tig0026884:8867-8886 | Msa1431640:five_prime_UTR | 25.0% |
!! | GTTTAAATGGGAAAAGTTTT+TGG | + | tig0026884:9115-9134 | None:intergenic | 25.0% |
!!! | GTTTTAGTTGTTAGTAGTGA+TGG | + | tig0026884:4889-4908 | None:intergenic | 30.0% |
! | GTTTCTGTTTTGTGTCAATT+AGG | - | tig0026884:5413-5432 | Msa1431640:intron | 30.0% |
!! | CGATGCATTATTTTTCGTTT+TGG | - | tig0026884:5472-5491 | Msa1431640:CDS | 30.0% |
! | ATTACAGTGTATGCTTTGTT+AGG | - | tig0026884:5705-5724 | Msa1431640:CDS | 30.0% |
! | ATTTGTGTATTTAGGCATTG+GGG | - | tig0026884:5883-5902 | Msa1431640:intron | 30.0% |
! | ATAGCTAGAATGGATTCATT+TGG | + | tig0026884:6154-6173 | None:intergenic | 30.0% |
!!! | TCGCAGCAACATTTTTTTAT+AGG | + | tig0026884:6240-6259 | None:intergenic | 30.0% |
GCAACAAATGAATGATTAAC+AGG | + | tig0026884:6318-6337 | None:intergenic | 30.0% | |
CTACAGTGAAGAAATGAAAT+CGG | + | tig0026884:6388-6407 | None:intergenic | 30.0% | |
CTAACATAGTACTTTAACAG+AGG | - | tig0026884:6527-6546 | Msa1431640:intron | 30.0% | |
TTCTTCTTCTTCTTCTTTGT+TGG | + | tig0026884:6858-6877 | None:intergenic | 30.0% | |
!! | TCATTTTTCATTCAATACCG+AGG | + | tig0026884:7108-7127 | None:intergenic | 30.0% |
!!! | AAGTTAGTTTTTTGGCAAGT+TGG | + | tig0026884:7290-7309 | None:intergenic | 30.0% |
TTGTGATGATTAGAAGGTTA+AGG | - | tig0026884:8023-8042 | Msa1431640:intron | 30.0% | |
! | TTTTACATGGTATTCTACAG+TGG | - | tig0026884:8172-8191 | Msa1431640:CDS | 30.0% |
TAAATCAGAATCCATCCTTA+AGG | - | tig0026884:8260-8279 | Msa1431640:intron | 30.0% | |
AAAATCAACATCCTTAAGGA+TGG | + | tig0026884:8274-8293 | None:intergenic | 30.0% | |
ACACTATAATGAGAAGGAAA+AGG | + | tig0026884:8345-8364 | None:intergenic | 30.0% | |
! | GTCCTAATTTGCAGAATAAA+TGG | - | tig0026884:8386-8405 | Msa1431640:intron | 30.0% |
! | CCTAATTTGCAGAATAAATG+GGG | - | tig0026884:8388-8407 | Msa1431640:intron | 30.0% |
! | CTAATTTGCAGAATAAATGG+GGG | - | tig0026884:8389-8408 | Msa1431640:intron | 30.0% |
GGGAGACTAAAAAAAGATAA+TGG | - | tig0026884:8409-8428 | Msa1431640:intron | 30.0% | |
! | AAAAAGATAATGGTTGGGTT+AGG | - | tig0026884:8419-8438 | Msa1431640:intron | 30.0% |
GGTTAATGAAAACATCAGAA+AGG | - | tig0026884:8465-8484 | Msa1431640:intron | 30.0% | |
TTTAAAAATACAGATGGGAC+TGG | - | tig0026884:8503-8522 | Msa1431640:intron | 30.0% | |
!! | TTTTGAAGGATAGAAAGTGA+AGG | - | tig0026884:8725-8744 | Msa1431640:intron | 30.0% |
AATTCTTGGTTTAGGTGTAT+TGG | - | tig0026884:8817-8836 | Msa1431640:intron | 30.0% | |
GGTGTATATACTATATAGTG+GGG | - | tig0026884:8868-8887 | Msa1431640:five_prime_UTR | 30.0% | |
!! | AAGATGCTTGTTATCAGAGA+GGG | - | tig0026884:4948-4967 | Msa1431640:three_prime_UTR | 35.0% |
ACAAACAAAGTTCCTCTACT+TGG | + | tig0026884:5049-5068 | None:intergenic | 35.0% | |
TCCAAGAATCTCACAATCAA+TGG | - | tig0026884:5125-5144 | Msa1431640:three_prime_UTR | 35.0% | |
! | ATCGCGATTACGAATTGTTT+TGG | - | tig0026884:5326-5345 | Msa1431640:CDS | 35.0% |
CGGATATACACTAATTGCAT+CGG | + | tig0026884:5454-5473 | None:intergenic | 35.0% | |
! | ATGGATTCATTTGGTGATAG+AGG | + | tig0026884:6145-6164 | None:intergenic | 35.0% |
! | TTTTCATTATCTCCCAAACC+TGG | - | tig0026884:6186-6205 | Msa1431640:intron | 35.0% |
! | TTTTCTCTATCTCCAGGTTT+GGG | + | tig0026884:6201-6220 | None:intergenic | 35.0% |
! | TTGGGTTGTTTGAGTAAGTT+AGG | - | tig0026884:6288-6307 | Msa1431640:intron | 35.0% |
! | TTGAAAAGGAAAAGCACACA+TGG | + | tig0026884:6419-6438 | None:intergenic | 35.0% |
CAAAGCTGGATATTTGTTCT+AGG | + | tig0026884:6567-6586 | None:intergenic | 35.0% | |
AGGAGGATATTTGTTCTATG+TGG | + | tig0026884:6595-6614 | None:intergenic | 35.0% | |
AGATTGGAAGAGATAAGGAT+CGG | + | tig0026884:6633-6652 | None:intergenic | 35.0% | |
GGAAAAGATTGGAAGAGATA+AGG | + | tig0026884:6638-6657 | None:intergenic | 35.0% | |
! | GACATTTTGTTGCAATTGGA+GGG | + | tig0026884:6716-6735 | None:intergenic | 35.0% |
! | TGACATTTTGTTGCAATTGG+AGG | + | tig0026884:6717-6736 | None:intergenic | 35.0% |
! | AAAAAGCACAAAAGCTGAAG+AGG | - | tig0026884:7563-7582 | Msa1431640:intron | 35.0% |
! | AAAAGCACAAAAGCTGAAGA+GGG | - | tig0026884:7564-7583 | Msa1431640:intron | 35.0% |
AATCATTGAAAAAGCCCCAA+AGG | - | tig0026884:7630-7649 | Msa1431640:intron | 35.0% | |
AGAAGAGAGCAAATTACCTT+TGG | + | tig0026884:7755-7774 | None:intergenic | 35.0% | |
! | TTATTCATGCCTTTTGAGCA+AGG | - | tig0026884:7857-7876 | Msa1431640:intron | 35.0% |
! | TGCTGTTTGTGATGATTAGA+AGG | - | tig0026884:8017-8036 | Msa1431640:intron | 35.0% |
TTCAGCATCAATTCCAAATC+TGG | + | tig0026884:8201-8220 | None:intergenic | 35.0% | |
AAAGATGCCGTAGATATACA+TGG | - | tig0026884:8219-8238 | Msa1431640:intron | 35.0% | |
AAGATGCCGTAGATATACAT+GGG | - | tig0026884:8220-8239 | Msa1431640:intron | 35.0% | |
GAGCAAAATCAACATCCTTA+AGG | + | tig0026884:8278-8297 | None:intergenic | 35.0% | |
ATCATGAGTCCATTTGTGAA+GGG | + | tig0026884:8301-8320 | None:intergenic | 35.0% | |
CCCCATTTATTCTGCAAATT+AGG | + | tig0026884:8391-8410 | None:intergenic | 35.0% | |
ATCCTAAGAAGAAGACTGTA+CGG | - | tig0026884:8443-8462 | Msa1431640:intron | 35.0% | |
! | GTTCGAAAATTGCTGTTAAG+AGG | + | tig0026884:8663-8682 | None:intergenic | 35.0% |
! | AACAGCAATTTTCGAACAGA+TGG | - | tig0026884:8666-8685 | Msa1431640:intron | 35.0% |
! | GGAAATTGTGACTCTTTTGA+AGG | - | tig0026884:8711-8730 | Msa1431640:intron | 35.0% |
TATAGTAGTGCATGTGGATT+AGG | - | tig0026884:8962-8981 | Msa1431640:five_prime_UTR | 35.0% | |
! | GAATGAGTGTTATTGTTCTG+TGG | - | tig0026884:8997-9016 | Msa1431640:five_prime_UTR | 35.0% |
TATAGTAGTGCATGTGGATT+AGG | - | tig0026884:8962-8981 | Msa1431640:five_prime_UTR | 35.0% | |
! | AATTTTGTACATAGCAGCAG+TGG | + | tig0026884:9078-9097 | None:intergenic | 35.0% |
! | GATGGGAAAGAAGTATAGAG+AGG | + | tig0026884:4871-4890 | None:intergenic | 40.0% |
!! | CAAGATGCTTGTTATCAGAG+AGG | - | tig0026884:4947-4966 | Msa1431640:three_prime_UTR | 40.0% |
GATTGTGAGATTCTTGGAGA+AGG | + | tig0026884:5123-5142 | None:intergenic | 40.0% | |
! | GCCATTGATTGTGAGATTCT+TGG | + | tig0026884:5129-5148 | None:intergenic | 40.0% |
! | TGTGTCAATTAGGTTTTCGG+TGG | - | tig0026884:5423-5442 | Msa1431640:intron | 40.0% |
! | CTTTTCTCTATCTCCAGGTT+TGG | + | tig0026884:6202-6221 | None:intergenic | 40.0% |
! | TTGAGCTTTTCTCTATCTCC+AGG | + | tig0026884:6207-6226 | None:intergenic | 40.0% |
GAAGAAGAAGAAGATGCCAA+AGG | - | tig0026884:6869-6888 | Msa1431640:intron | 40.0% | |
AAGATGCCAAAGGTAGAGAT+AGG | - | tig0026884:6879-6898 | Msa1431640:intron | 40.0% | |
AGAAGAAGAAGAAGCTACAC+TGG | - | tig0026884:6930-6949 | Msa1431640:intron | 40.0% | |
!!! | CACTGGTTTTCAACGTTGTA+TGG | - | tig0026884:6947-6966 | Msa1431640:intron | 40.0% |
TCAACGTTGTATGGTGTGAA+TGG | - | tig0026884:6956-6975 | Msa1431640:intron | 40.0% | |
! | CTAATTTTGTGTCTTTGGGC+AGG | - | tig0026884:7706-7725 | Msa1431640:intron | 40.0% |
AGATGCCGTAGATATACATG+GGG | - | tig0026884:8221-8240 | Msa1431640:intron | 40.0% | |
ATCCTCCCCATGTATATCTA+CGG | + | tig0026884:8229-8248 | None:intergenic | 40.0% | |
! | ATTTTGCTCCCCTTCACAAA+TGG | - | tig0026884:8289-8308 | Msa1431640:intron | 40.0% |
TCATGAGTCCATTTGTGAAG+GGG | + | tig0026884:8300-8319 | None:intergenic | 40.0% | |
CATCATGAGTCCATTTGTGA+AGG | + | tig0026884:8302-8321 | None:intergenic | 40.0% | |
TCCTAAGAAGAAGACTGTAC+GGG | - | tig0026884:8444-8463 | Msa1431640:intron | 40.0% | |
TTTCCATCGACAGACTTCTT+TGG | - | tig0026884:8564-8583 | Msa1431640:intron | 40.0% | |
TGAAGGATAGAAAGTGAAGG+TGG | - | tig0026884:8728-8747 | Msa1431640:intron | 40.0% | |
TTGCTCGTGAATGTGATTCA+TGG | - | tig0026884:8847-8866 | Msa1431640:intron | 40.0% | |
CACAGAACAATAACACTCAC+TGG | + | tig0026884:8937-8956 | None:intergenic | 40.0% | |
! | CAGTGAGTGTTATTGTTCTG+TGG | - | tig0026884:8935-8954 | Msa1431640:five_prime_UTR | 40.0% |
! | ACTCTAGAAAGTTCGCCAAG+AGG | + | tig0026884:5004-5023 | None:intergenic | 45.0% |
GTTTGTCGAGAGATCAGAGA+CGG | - | tig0026884:5063-5082 | Msa1431640:three_prime_UTR | 45.0% | |
AGAGGCAGCAACAAATTCTC+AGG | - | tig0026884:5088-5107 | Msa1431640:three_prime_UTR | 45.0% | |
AGATCGCAAGATGAAGTCTG+TGG | - | tig0026884:5733-5752 | Msa1431640:CDS | 45.0% | |
CAAGATGAAGTCTGTGGCAT+TGG | - | tig0026884:5739-5758 | Msa1431640:CDS | 45.0% | |
! | GAAGTCTGTGGCATTGGAAT+TGG | - | tig0026884:5745-5764 | Msa1431640:CDS | 45.0% |
CATTGGGGAACGTGAACTAA+AGG | - | tig0026884:5898-5917 | Msa1431640:intron | 45.0% | |
TCTATGTGGTGACACAAAGC+TGG | + | tig0026884:6581-6600 | None:intergenic | 45.0% | |
ATGCCAAAGGTAGAGATAGG+TGG | - | tig0026884:6882-6901 | Msa1431640:intron | 45.0% | |
ACGTTGTATGGTGTGAATGG+AGG | - | tig0026884:6959-6978 | Msa1431640:intron | 45.0% | |
CGTTGTATGGTGTGAATGGA+GGG | - | tig0026884:6960-6979 | Msa1431640:intron | 45.0% | |
ATGGTGTGAATGGAGGGAAA+TGG | - | tig0026884:6966-6985 | Msa1431640:intron | 45.0% | |
TTGTCTGCTGCAGCTTAAGT+GGG | - | tig0026884:7477-7496 | Msa1431640:intron | 45.0% | |
TAAGTGGGAAGCTTGTAAGC+TGG | - | tig0026884:7492-7511 | Msa1431640:intron | 45.0% | |
TGTAAGCTGGCTAGGTCTAA+TGG | - | tig0026884:7505-7524 | Msa1431640:intron | 45.0% | |
GTAAGCTGGCTAGGTCTAAT+GGG | - | tig0026884:7506-7525 | Msa1431640:intron | 45.0% | |
ATTAGACCTAGCTAGCTGAC+GGG | + | tig0026884:7593-7612 | None:intergenic | 45.0% | |
CATTAGACCTAGCTAGCTGA+CGG | + | tig0026884:7594-7613 | None:intergenic | 45.0% | |
AGCTAGCTAGGTCTAATGCA+GGG | - | tig0026884:7596-7615 | Msa1431640:intron | 45.0% | |
CATTGGGAAACGTGAACCAA+AGG | - | tig0026884:7736-7755 | Msa1431640:intron | 45.0% | |
ACCTGGCTACATGAACTTGA+AGG | - | tig0026884:7941-7960 | Msa1431640:intron | 45.0% | |
CCTGGCTACATGAACTTGAA+GGG | - | tig0026884:7942-7961 | Msa1431640:intron | 45.0% | |
! | TCTACAGTGGACTCCAGATT+TGG | - | tig0026884:8185-8204 | Msa1431640:CDS | 45.0% |
! | AATGGACTCATGATGCACTG+AGG | - | tig0026884:8307-8326 | Msa1431640:intron | 45.0% |
ATGGACTCATGATGCACTGA+GGG | - | tig0026884:8308-8327 | Msa1431640:intron | 45.0% | |
ACCCGTACAGTCTTCTTCTT+AGG | + | tig0026884:8448-8467 | None:intergenic | 45.0% | |
! | AATACAGATGGGACTGGTAC+TGG | - | tig0026884:8509-8528 | Msa1431640:intron | 45.0% |
CATCCAAAGAAGTCTGTCGA+TGG | + | tig0026884:8570-8589 | None:intergenic | 45.0% | |
GTTAAGAGGTTCACAACAGC+AGG | + | tig0026884:8649-8668 | None:intergenic | 45.0% | |
TACTGCGAATGCAGGTATCA+AGG | - | tig0026884:8690-8709 | Msa1431640:intron | 45.0% | |
CAAAACTCAACCACTCCTTC+CGG | + | tig0026884:8767-8786 | None:intergenic | 45.0% | |
GGTGTCTATAGTAGTGCATG+TGG | - | tig0026884:8956-8975 | Msa1431640:five_prime_UTR | 45.0% | |
GGTGTCTATAGTAGTGCATG+TGG | - | tig0026884:8956-8975 | Msa1431640:five_prime_UTR | 45.0% | |
TTTGTACATAGCAGCAGTGG+TGG | + | tig0026884:9075-9094 | None:intergenic | 45.0% | |
TGCTCTGCACTTCCAAGTAG+AGG | - | tig0026884:5034-5053 | Msa1431640:three_prime_UTR | 50.0% | |
GAGAGATCAGAGACGGTTAG+AGG | - | tig0026884:5070-5089 | Msa1431640:three_prime_UTR | 50.0% | |
ATGGATCTGATGACTCCAGC+TGG | - | tig0026884:5828-5847 | Msa1431640:intron | 50.0% | |
! | CTCCAGCTGGAGTCAGATTT+TGG | - | tig0026884:5841-5860 | Msa1431640:intron | 50.0% |
AGCCAAAATCTGACTCCAGC+TGG | + | tig0026884:5846-5865 | None:intergenic | 50.0% | |
! | ATCGGCTGGGTTGACAAAGA+AGG | + | tig0026884:6615-6634 | None:intergenic | 50.0% |
GGAAGAGATAAGGATCGGCT+GGG | + | tig0026884:6628-6647 | None:intergenic | 50.0% | |
TGGAAGAGATAAGGATCGGC+TGG | + | tig0026884:6629-6648 | None:intergenic | 50.0% | |
CCACCACCTATCTCTACCTT+TGG | + | tig0026884:6888-6907 | None:intergenic | 50.0% | |
CCAAAGGTAGAGATAGGTGG+TGG | - | tig0026884:6885-6904 | Msa1431640:intron | 50.0% | |
! | AAGGTAGAGATAGGTGGTGG+AGG | - | tig0026884:6888-6907 | Msa1431640:intron | 50.0% |
CACTTAAGCTGCAGCAGACA+AGG | + | tig0026884:7478-7497 | None:intergenic | 50.0% | |
CTTGTCTGCTGCAGCTTAAG+TGG | - | tig0026884:7476-7495 | Msa1431640:intron | 50.0% | |
!! | GGCTAGGTCTAATGGGTTTG+AGG | - | tig0026884:7513-7532 | Msa1431640:intron | 50.0% |
CAGCTAGCTAGGTCTAATGC+AGG | - | tig0026884:7595-7614 | Msa1431640:intron | 50.0% | |
CTAGGTCTAATGCAGGGACT+CGG | - | tig0026884:7602-7621 | Msa1431640:intron | 50.0% | |
TAGGTCTAATGCAGGGACTC+GGG | - | tig0026884:7603-7622 | Msa1431640:intron | 50.0% | |
TTGTGTCTTTGGGCAGGCAT+TGG | - | tig0026884:7712-7731 | Msa1431640:intron | 50.0% | |
TGTGTCTTTGGGCAGGCATT+GGG | - | tig0026884:7713-7732 | Msa1431640:intron | 50.0% | |
! | CCCTTCAAGTTCATGTAGCC+AGG | + | tig0026884:7945-7964 | None:intergenic | 50.0% |
TGCCGTAGATATACATGGGG+AGG | - | tig0026884:8224-8243 | Msa1431640:intron | 50.0% | |
CAGATGGTTACTGCGAATGC+AGG | - | tig0026884:8682-8701 | Msa1431640:intron | 50.0% | |
AGGTGGAAAGAGTAGCTAGC+CGG | - | tig0026884:8745-8764 | Msa1431640:intron | 50.0% | |
GTCTCTGCTTGAAGACGCTG+TGG | - | tig0026884:5799-5818 | Msa1431640:intron | 55.0% | |
GAAGACGCTGTGGCAGACTA+TGG | - | tig0026884:5809-5828 | Msa1431640:intron | 55.0% | |
! | GGCTGGGTTGACAAAGAAGG+AGG | + | tig0026884:6612-6631 | None:intergenic | 55.0% |
!! | GTAGAGATAGGTGGTGGAGG+AGG | - | tig0026884:6891-6910 | Msa1431640:intron | 55.0% |
GGGAAGCTTGTAAGCTGGCT+AGG | - | tig0026884:7497-7516 | Msa1431640:intron | 55.0% | |
AGGTCTAATGCAGGGACTCG+GGG | - | tig0026884:7604-7623 | Msa1431640:intron | 55.0% | |
!! | TTTGGGCAGGCATTGGGCAT+TGG | - | tig0026884:7719-7738 | Msa1431640:intron | 55.0% |
!! | TTGGGCAGGCATTGGGCATT+GGG | - | tig0026884:7720-7739 | Msa1431640:intron | 55.0% |
!! | CCAGGCTCAGCAGAAGTACT+GGG | + | tig0026884:8595-8614 | None:intergenic | 55.0% |
! | ACCAGGCTCAGCAGAAGTAC+TGG | + | tig0026884:8596-8615 | None:intergenic | 55.0% |
TTCTGCTGTGCCTGCTGTGA+TGG | - | tig0026884:8618-8637 | Msa1431640:intron | 55.0% | |
GGAAAGAGTAGCTAGCCGGA+AGG | - | tig0026884:8749-8768 | Msa1431640:intron | 55.0% | |
!! | GAGATAGGTGGTGGAGGAGG+AGG | - | tig0026884:6894-6913 | Msa1431640:intron | 60.0% |
CCCAGTACTTCTGCTGAGCC+TGG | - | tig0026884:8592-8611 | Msa1431640:intron | 60.0% | |
!! | GCAGGCACAGCAGAAGTACC+AGG | + | tig0026884:8613-8632 | None:intergenic | 60.0% |
GCAGGCACATCCATCACAGC+AGG | + | tig0026884:8631-8650 | None:intergenic | 60.0% | |
GAGTAGCTAGCCGGAAGGAG+TGG | - | tig0026884:8754-8773 | Msa1431640:intron | 60.0% | |
GGGAAGCCCGTCAGCTAGCT+AGG | - | tig0026884:7584-7603 | Msa1431640:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0026884 | gene | 4813 | 9145 | 4813 | ID=Msa1431640;Name=Msa1431640 |
tig0026884 | mRNA | 4813 | 9145 | 4813 | ID=Msa1431640-mRNA-1;Parent=Msa1431640;Name=Msa1431640-mRNA-1;_AED=0.27;_eAED=0.27;_QI=298|1|1|1|0.83|0.85|7|401|258 |
tig0026884 | exon | 4813 | 5381 | 4813 | ID=Msa1431640-mRNA-1:exon:7689;Parent=Msa1431640-mRNA-1 |
tig0026884 | exon | 5472 | 5558 | 5472 | ID=Msa1431640-mRNA-1:exon:7688;Parent=Msa1431640-mRNA-1 |
tig0026884 | exon | 5629 | 5766 | 5629 | ID=Msa1431640-mRNA-1:exon:7687;Parent=Msa1431640-mRNA-1 |
tig0026884 | exon | 6201 | 6230 | 6201 | ID=Msa1431640-mRNA-1:exon:7686;Parent=Msa1431640-mRNA-1 |
tig0026884 | exon | 6307 | 6468 | 6307 | ID=Msa1431640-mRNA-1:exon:7685;Parent=Msa1431640-mRNA-1 |
tig0026884 | exon | 8039 | 8231 | 8039 | ID=Msa1431640-mRNA-1:exon:7684;Parent=Msa1431640-mRNA-1 |
tig0026884 | exon | 8849 | 9145 | 8849 | ID=Msa1431640-mRNA-1:exon:7683;Parent=Msa1431640-mRNA-1 |
tig0026884 | five_prime_UTR | 8849 | 9145 | 8849 | ID=Msa1431640-mRNA-1:five_prime_utr;Parent=Msa1431640-mRNA-1 |
tig0026884 | five_prime_UTR | 8231 | 8231 | 8231 | ID=Msa1431640-mRNA-1:five_prime_utr;Parent=Msa1431640-mRNA-1 |
tig0026884 | CDS | 8039 | 8230 | 8039 | ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1 |
tig0026884 | CDS | 6307 | 6468 | 6307 | ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1 |
tig0026884 | CDS | 6201 | 6230 | 6201 | ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1 |
tig0026884 | CDS | 5629 | 5766 | 5629 | ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1 |
tig0026884 | CDS | 5472 | 5558 | 5472 | ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1 |
tig0026884 | CDS | 5214 | 5381 | 5214 | ID=Msa1431640-mRNA-1:cds;Parent=Msa1431640-mRNA-1 |
tig0026884 | three_prime_UTR | 4813 | 5213 | 4813 | ID=Msa1431640-mRNA-1:three_prime_utr;Parent=Msa1431640-mRNA-1 |
Gene Sequence |
Protein sequence |