AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0465550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465550 MtrunA17_Chr3g0117831 100.000 73 0 0 1 73 1 73 3.85e-44 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465550 AT1G64750.2 76.712 73 16 1 1 72 1 73 3.37e-11 53.5
Msa0465550 AT1G64750.1 76.712 73 16 1 1 72 1 73 3.37e-11 53.5

Find 40 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTGTTTCATTTATATT+TGG 0.190193 3_3:-65946639 Msa0465550:three_prime_UTR
TTTCATTTATATTTGGTATT+GGG 0.244519 3_3:-65946632 Msa0465550:three_prime_UTR
GTTTCATTTATATTTGGTAT+TGG 0.268290 3_3:-65946633 Msa0465550:three_prime_UTR
CTCAACAATGGGAGGATGAT+TGG 0.329365 3_3:-65947018 Msa0465550:CDS
TTGGCATCTAGCTTTATGTT+TGG 0.368291 3_3:-65946678 Msa0465550:three_prime_UTR
TGTGATTCTATATGATTAGT+TGG 0.393123 3_3:-65946697 Msa0465550:three_prime_UTR
GCAAAGTAATTACCCGGTAT+TGG 0.396702 3_3:+65948301 None:intergenic
ATTTATATTTGGTATTGGGT+TGG 0.401822 3_3:-65946628 Msa0465550:three_prime_UTR
CGATAAACCTTGGAGTGGTT+AGG 0.422444 3_3:+65948338 None:intergenic
TAAACTATGCCTTGTTATGA+AGG 0.436496 3_3:-65946818 Msa0465550:three_prime_UTR
TCAACAATGGGAGGATGATT+GGG 0.443446 3_3:-65947017 Msa0465550:CDS
TCATTCAATTCAACCAATAC+CGG 0.446119 3_3:-65948314 Msa0465550:five_prime_UTR
ATTTCTCTGTTCAGCTGAGA+AGG 0.461195 3_3:-65946973 Msa0465550:CDS
GCTTGTAAAGGAAGTAAGAA+AGG 0.491583 3_3:+65948395 None:intergenic
TGTTCAGCTGAGAAGGGAGT+TGG 0.494913 3_3:-65946966 Msa0465550:CDS
GAAAGAAGTAACTCAACAAT+GGG 0.498445 3_3:-65947029 Msa0465550:CDS
GAAGAGTTTGAAATCAATGA+AGG 0.502774 3_3:-65948055 Msa0465550:intron
ATTGAATGAACGATAAACCT+TGG 0.515059 3_3:+65948328 None:intergenic
AGAATCTTGTGTGCTTGTAA+AGG 0.524189 3_3:+65948383 None:intergenic
GAGTGGGATGACATGGAGGA+AGG 0.532354 3_3:-65947052 Msa0465550:CDS
TTTCTCTGTTCAGCTGAGAA+GGG 0.558420 3_3:-65946972 Msa0465550:CDS
AGCCTTTGCTTCAGTCGCCA+TGG 0.560336 3_3:+65948126 None:intergenic
GGTATCTGAGACTTTGAGCT+CGG 0.562408 3_3:-65946866 Msa0465550:three_prime_UTR
CATTCAATTCAACCAATACC+GGG 0.563039 3_3:-65948313 Msa0465550:intron
GGAAAGAAGTAACTCAACAA+TGG 0.565472 3_3:-65947030 Msa0465550:CDS
ATCCATGGCGACTGAAGCAA+AGG 0.576258 3_3:-65948128 Msa0465550:exon
ACTTGCAGAGTGGGATGACA+TGG 0.578383 3_3:-65947059 Msa0465550:intron
TGTTACTAAAACAGCACACA+AGG 0.588638 3_3:-65946792 Msa0465550:three_prime_UTR
AGTGGGATGACATGGAGGAA+GGG 0.591985 3_3:-65947051 Msa0465550:CDS
TGCAGATTCAGATTTATCCA+TGG 0.592856 3_3:-65948143 Msa0465550:intron
ATAAGAATTAAACCACCTGC+TGG 0.593819 3_3:-65946931 Msa0465550:exon
TGTGTAATGAGTTACAACTT+AGG 0.596314 3_3:-65946887 Msa0465550:three_prime_UTR
CATATAGAATCACAGAACTC+AGG 0.596950 3_3:+65946706 None:intergenic
TGAAGCAAAGGCTGTGACCG+AGG 0.600680 3_3:-65948116 Msa0465550:CDS
GTAACATTTCCTTCATAACA+AGG 0.614099 3_3:+65946809 None:intergenic
TAGATCGATCTTGACATCCT+CGG 0.618819 3_3:+65948099 None:intergenic
AGAAGTAACTCAACAATGGG+AGG 0.631574 3_3:-65947026 Msa0465550:CDS
AGCGAAACCTAACCACTCCA+AGG 0.652837 3_3:-65948345 Msa0465550:five_prime_UTR
ATGAACGATAAACCTTGGAG+TGG 0.655424 3_3:+65948333 None:intergenic
TGCAGAGTGGGATGACATGG+AGG 0.657206 3_3:-65947056 Msa0465550:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTGTTTCATTTATATT+TGG - chr3_3:65948358-65948377 Msa0465550:five_prime_UTR 15.0%
!! TTTCATTTATATTTGGTATT+GGG - chr3_3:65948365-65948384 Msa0465550:five_prime_UTR 15.0%
!! TATTCTGTTTCATTTATATT+TGG - chr3_3:65948358-65948377 Msa0465550:five_prime_UTR 15.0%
!! TTTCATTTATATTTGGTATT+GGG - chr3_3:65948365-65948384 Msa0465550:five_prime_UTR 15.0%
!!! AAAACCCTAATTTTGATAAA+GGG + chr3_3:65946786-65946805 None:intergenic 20.0%
!!! AAAAACCCTAATTTTGATAA+AGG + chr3_3:65946787-65946806 None:intergenic 20.0%
!! AAGTTTCAAATTACATGATT+GGG + chr3_3:65947424-65947443 None:intergenic 20.0%
!! TAAGTTTCAAATTACATGAT+TGG + chr3_3:65947425-65947444 None:intergenic 20.0%
!! GTTTCATTTATATTTGGTAT+TGG - chr3_3:65948364-65948383 Msa0465550:five_prime_UTR 20.0%
!!! AAAACCCTAATTTTGATAAA+GGG + chr3_3:65946786-65946805 None:intergenic 20.0%
!!! AAAAACCCTAATTTTGATAA+AGG + chr3_3:65946787-65946806 None:intergenic 20.0%
!! AAGTTTCAAATTACATGATT+GGG + chr3_3:65947424-65947443 None:intergenic 20.0%
!! TAAGTTTCAAATTACATGAT+TGG + chr3_3:65947425-65947444 None:intergenic 20.0%
!! GTTTCATTTATATTTGGTAT+TGG - chr3_3:65948364-65948383 Msa0465550:five_prime_UTR 20.0%
!!! AATTTTGATAAAGGGGAATA+GGG + chr3_3:65946778-65946797 None:intergenic 25.0%
!!! TAATTTTGATAAAGGGGAAT+AGG + chr3_3:65946779-65946798 None:intergenic 25.0%
! TATTCCCCTTTATCAAAATT+AGG - chr3_3:65946778-65946797 Msa0465550:three_prime_UTR 25.0%
! ATTCCCCTTTATCAAAATTA+GGG - chr3_3:65946779-65946798 Msa0465550:three_prime_UTR 25.0%
!!! AAACCCTAATTTTGATAAAG+GGG + chr3_3:65946785-65946804 None:intergenic 25.0%
!! ATTATCTTTGCTTCTGTTTT+AGG - chr3_3:65946999-65947018 Msa0465550:CDS 25.0%
! AACATCACTGAAAATTTCTT+AGG + chr3_3:65947045-65947064 None:intergenic 25.0%
! GTTTGGCATTCAATTAATTA+CGG - chr3_3:65947168-65947187 Msa0465550:intron 25.0%
! TTTGGCATTCAATTAATTAC+GGG - chr3_3:65947169-65947188 Msa0465550:intron 25.0%
! CTTATACATAAGCACTTATT+TGG - chr3_3:65947345-65947364 Msa0465550:intron 25.0%
! ATTTCATACACGAAATAAAG+TGG + chr3_3:65947465-65947484 None:intergenic 25.0%
!! TGTTAATCCTATTTCTCATT+AGG - chr3_3:65947712-65947731 Msa0465550:intron 25.0%
!!! TGAATCTCATTTAGTTTGAT+TGG - chr3_3:65947780-65947799 Msa0465550:intron 25.0%
! ATTGGCATTTGTATGTTAAT+TGG - chr3_3:65947798-65947817 Msa0465550:intron 25.0%
! TGTGATTCTATATGATTAGT+TGG - chr3_3:65948300-65948319 Msa0465550:intron 25.0%
!! ATTTATATTTGGTATTGGGT+TGG - chr3_3:65948369-65948388 Msa0465550:five_prime_UTR 25.0%
!!! AATTTTGATAAAGGGGAATA+GGG + chr3_3:65946778-65946797 None:intergenic 25.0%
!!! TAATTTTGATAAAGGGGAAT+AGG + chr3_3:65946779-65946798 None:intergenic 25.0%
! TATTCCCCTTTATCAAAATT+AGG - chr3_3:65946778-65946797 Msa0465550:three_prime_UTR 25.0%
! ATTCCCCTTTATCAAAATTA+GGG - chr3_3:65946779-65946798 Msa0465550:three_prime_UTR 25.0%
!!! AAACCCTAATTTTGATAAAG+GGG + chr3_3:65946785-65946804 None:intergenic 25.0%
!! ATTATCTTTGCTTCTGTTTT+AGG - chr3_3:65946999-65947018 Msa0465550:CDS 25.0%
! AACATCACTGAAAATTTCTT+AGG + chr3_3:65947045-65947064 None:intergenic 25.0%
! GTTTGGCATTCAATTAATTA+CGG - chr3_3:65947168-65947187 Msa0465550:intron 25.0%
! TTTGGCATTCAATTAATTAC+GGG - chr3_3:65947169-65947188 Msa0465550:intron 25.0%
! CTTATACATAAGCACTTATT+TGG - chr3_3:65947345-65947364 Msa0465550:intron 25.0%
! ATTTCATACACGAAATAAAG+TGG + chr3_3:65947465-65947484 None:intergenic 25.0%
!! TGTTAATCCTATTTCTCATT+AGG - chr3_3:65947712-65947731 Msa0465550:intron 25.0%
!!! TGAATCTCATTTAGTTTGAT+TGG - chr3_3:65947780-65947799 Msa0465550:intron 25.0%
! ATTGGCATTTGTATGTTAAT+TGG - chr3_3:65947798-65947817 Msa0465550:intron 25.0%
! TGTGATTCTATATGATTAGT+TGG - chr3_3:65948300-65948319 Msa0465550:intron 25.0%
!! ATTTATATTTGGTATTGGGT+TGG - chr3_3:65948369-65948388 Msa0465550:five_prime_UTR 25.0%
ATTGAATGAACGATAAACCT+TGG + chr3_3:65946672-65946691 None:intergenic 30.0%
TCATTCAATTCAACCAATAC+CGG - chr3_3:65946683-65946702 Msa0465550:three_prime_UTR 30.0%
AGAACAAATGATTGCAATGA+AGG + chr3_3:65946723-65946742 None:intergenic 30.0%
GCGCATAAATTTCACAAATT+CGG + chr3_3:65946816-65946835 None:intergenic 30.0%
! GAAGAGTTTGAAATCAATGA+AGG - chr3_3:65946942-65946961 Msa0465550:exon 30.0%
AAGCAAAGATAATTGCATCA+GGG + chr3_3:65946992-65947011 None:intergenic 30.0%
ACAGCACTTATATACTAGAT+AGG + chr3_3:65947212-65947231 None:intergenic 30.0%
! TCTAGTATATAAGTGCTGTT+TGG - chr3_3:65947213-65947232 Msa0465550:intron 30.0%
! TGAACATTTGTTAGACTGTT+TGG - chr3_3:65947248-65947267 Msa0465550:intron 30.0%
! GAACATTTGTTAGACTGTTT+GGG - chr3_3:65947249-65947268 Msa0465550:intron 30.0%
CAAATTACATGATTGGGTTA+TGG + chr3_3:65947418-65947437 None:intergenic 30.0%
GCTGCATCATTTATATAATC+AGG + chr3_3:65947567-65947586 None:intergenic 30.0%
TTTCTTGACGACTTGAAATT+AGG - chr3_3:65947840-65947859 Msa0465550:intron 30.0%
GAAAGAAGTAACTCAACAAT+GGG - chr3_3:65947968-65947987 Msa0465550:intron 30.0%
TGTGTAATGAGTTACAACTT+AGG - chr3_3:65948110-65948129 Msa0465550:CDS 30.0%
! TAAACTATGCCTTGTTATGA+AGG - chr3_3:65948179-65948198 Msa0465550:intron 30.0%
GTAACATTTCCTTCATAACA+AGG + chr3_3:65948191-65948210 None:intergenic 30.0%
!! TTTTTCTATGAAGAGTGTGT+TGG - chr3_3:65948398-65948417 Msa0465550:five_prime_UTR 30.0%
ATTGAATGAACGATAAACCT+TGG + chr3_3:65946672-65946691 None:intergenic 30.0%
TCATTCAATTCAACCAATAC+CGG - chr3_3:65946683-65946702 Msa0465550:three_prime_UTR 30.0%
AGAACAAATGATTGCAATGA+AGG + chr3_3:65946723-65946742 None:intergenic 30.0%
GCGCATAAATTTCACAAATT+CGG + chr3_3:65946816-65946835 None:intergenic 30.0%
! GAAGAGTTTGAAATCAATGA+AGG - chr3_3:65946942-65946961 Msa0465550:exon 30.0%
AAGCAAAGATAATTGCATCA+GGG + chr3_3:65946992-65947011 None:intergenic 30.0%
ACAGCACTTATATACTAGAT+AGG + chr3_3:65947212-65947231 None:intergenic 30.0%
! TCTAGTATATAAGTGCTGTT+TGG - chr3_3:65947213-65947232 Msa0465550:intron 30.0%
! TGAACATTTGTTAGACTGTT+TGG - chr3_3:65947248-65947267 Msa0465550:intron 30.0%
! GAACATTTGTTAGACTGTTT+GGG - chr3_3:65947249-65947268 Msa0465550:intron 30.0%
CAAATTACATGATTGGGTTA+TGG + chr3_3:65947418-65947437 None:intergenic 30.0%
GCTGCATCATTTATATAATC+AGG + chr3_3:65947567-65947586 None:intergenic 30.0%
TTTCTTGACGACTTGAAATT+AGG - chr3_3:65947840-65947859 Msa0465550:intron 30.0%
GAAAGAAGTAACTCAACAAT+GGG - chr3_3:65947968-65947987 Msa0465550:intron 30.0%
TGTGTAATGAGTTACAACTT+AGG - chr3_3:65948110-65948129 Msa0465550:CDS 30.0%
! TAAACTATGCCTTGTTATGA+AGG - chr3_3:65948179-65948198 Msa0465550:intron 30.0%
GTAACATTTCCTTCATAACA+AGG + chr3_3:65948191-65948210 None:intergenic 30.0%
!! TTTTTCTATGAAGAGTGTGT+TGG - chr3_3:65948398-65948417 Msa0465550:five_prime_UTR 30.0%
GCTTGTAAAGGAAGTAAGAA+AGG + chr3_3:65946605-65946624 None:intergenic 35.0%
AGAATCTTGTGTGCTTGTAA+AGG + chr3_3:65946617-65946636 None:intergenic 35.0%
CATTCAATTCAACCAATACC+GGG - chr3_3:65946684-65946703 Msa0465550:three_prime_UTR 35.0%
TTGTGAAATTTATGCGCTGT+TGG - chr3_3:65946819-65946838 Msa0465550:three_prime_UTR 35.0%
TGTGAAATTTATGCGCTGTT+GGG - chr3_3:65946820-65946839 Msa0465550:three_prime_UTR 35.0%
TGCAGATTCAGATTTATCCA+TGG - chr3_3:65946854-65946873 Msa0465550:three_prime_UTR 35.0%
TAATTGCATCAGGGAAGAAA+CGG + chr3_3:65946983-65947002 None:intergenic 35.0%
GAAGCAAAGATAATTGCATC+AGG + chr3_3:65946993-65947012 None:intergenic 35.0%
!! TATTCATTAGTTTGCTTCCG+TGG - chr3_3:65947088-65947107 Msa0465550:intron 35.0%
ATCCTAATTCGTTTCTTCCA+CGG + chr3_3:65947108-65947127 None:intergenic 35.0%
TTACATGATTGGGTTATGGT+TGG + chr3_3:65947414-65947433 None:intergenic 35.0%
ATACACGAAATAAAGTGGTG+AGG + chr3_3:65947460-65947479 None:intergenic 35.0%
GTTCATGCCTAATGAGAAAT+AGG + chr3_3:65947722-65947741 None:intergenic 35.0%
ATTAGGCATGAACACTTCTA+GGG - chr3_3:65947729-65947748 Msa0465550:intron 35.0%
!! ACTTCTAGGGCGAAAATTAT+AGG - chr3_3:65947742-65947761 Msa0465550:intron 35.0%
TTCAAGTCGTCAAGAAAAGT+TGG + chr3_3:65947837-65947856 None:intergenic 35.0%
! GACTTGAAATTAGGAGGTTT+TGG - chr3_3:65947849-65947868 Msa0465550:intron 35.0%
AGATTAGATTGTGAGTGCAA+TGG + chr3_3:65947882-65947901 None:intergenic 35.0%
!! TTGTTTTACAACTTGCAGAG+TGG - chr3_3:65947928-65947947 Msa0465550:intron 35.0%
! TGTTTTACAACTTGCAGAGT+GGG - chr3_3:65947929-65947948 Msa0465550:intron 35.0%
GGAAAGAAGTAACTCAACAA+TGG - chr3_3:65947967-65947986 Msa0465550:intron 35.0%
ATAAGAATTAAACCACCTGC+TGG - chr3_3:65948066-65948085 Msa0465550:CDS 35.0%
ATCAAACAAAAATAGCCAGC+AGG + chr3_3:65948084-65948103 None:intergenic 35.0%
TGTTACTAAAACAGCACACA+AGG - chr3_3:65948205-65948224 Msa0465550:intron 35.0%
CATATAGAATCACAGAACTC+AGG + chr3_3:65948294-65948313 None:intergenic 35.0%
!! TTGGCATCTAGCTTTATGTT+TGG - chr3_3:65948319-65948338 Msa0465550:five_prime_UTR 35.0%
GCTTGTAAAGGAAGTAAGAA+AGG + chr3_3:65946605-65946624 None:intergenic 35.0%
AGAATCTTGTGTGCTTGTAA+AGG + chr3_3:65946617-65946636 None:intergenic 35.0%
CATTCAATTCAACCAATACC+GGG - chr3_3:65946684-65946703 Msa0465550:three_prime_UTR 35.0%
TTGTGAAATTTATGCGCTGT+TGG - chr3_3:65946819-65946838 Msa0465550:three_prime_UTR 35.0%
TGTGAAATTTATGCGCTGTT+GGG - chr3_3:65946820-65946839 Msa0465550:three_prime_UTR 35.0%
TGCAGATTCAGATTTATCCA+TGG - chr3_3:65946854-65946873 Msa0465550:three_prime_UTR 35.0%
TAATTGCATCAGGGAAGAAA+CGG + chr3_3:65946983-65947002 None:intergenic 35.0%
GAAGCAAAGATAATTGCATC+AGG + chr3_3:65946993-65947012 None:intergenic 35.0%
!! TATTCATTAGTTTGCTTCCG+TGG - chr3_3:65947088-65947107 Msa0465550:intron 35.0%
ATCCTAATTCGTTTCTTCCA+CGG + chr3_3:65947108-65947127 None:intergenic 35.0%
TTACATGATTGGGTTATGGT+TGG + chr3_3:65947414-65947433 None:intergenic 35.0%
ATACACGAAATAAAGTGGTG+AGG + chr3_3:65947460-65947479 None:intergenic 35.0%
GTTCATGCCTAATGAGAAAT+AGG + chr3_3:65947722-65947741 None:intergenic 35.0%
ATTAGGCATGAACACTTCTA+GGG - chr3_3:65947729-65947748 Msa0465550:intron 35.0%
!! ACTTCTAGGGCGAAAATTAT+AGG - chr3_3:65947742-65947761 Msa0465550:intron 35.0%
TTCAAGTCGTCAAGAAAAGT+TGG + chr3_3:65947837-65947856 None:intergenic 35.0%
! GACTTGAAATTAGGAGGTTT+TGG - chr3_3:65947849-65947868 Msa0465550:intron 35.0%
AGATTAGATTGTGAGTGCAA+TGG + chr3_3:65947882-65947901 None:intergenic 35.0%
!! TTGTTTTACAACTTGCAGAG+TGG - chr3_3:65947928-65947947 Msa0465550:intron 35.0%
! TGTTTTACAACTTGCAGAGT+GGG - chr3_3:65947929-65947948 Msa0465550:intron 35.0%
GGAAAGAAGTAACTCAACAA+TGG - chr3_3:65947967-65947986 Msa0465550:intron 35.0%
ATAAGAATTAAACCACCTGC+TGG - chr3_3:65948066-65948085 Msa0465550:CDS 35.0%
ATCAAACAAAAATAGCCAGC+AGG + chr3_3:65948084-65948103 None:intergenic 35.0%
TGTTACTAAAACAGCACACA+AGG - chr3_3:65948205-65948224 Msa0465550:intron 35.0%
CATATAGAATCACAGAACTC+AGG + chr3_3:65948294-65948313 None:intergenic 35.0%
!! TTGGCATCTAGCTTTATGTT+TGG - chr3_3:65948319-65948338 Msa0465550:five_prime_UTR 35.0%
! TCTGAAGAGCGTGAAAAACT+TGG + chr3_3:65946568-65946587 None:intergenic 40.0%
ATGAACGATAAACCTTGGAG+TGG + chr3_3:65946667-65946686 None:intergenic 40.0%
GCAAAGTAATTACCCGGTAT+TGG + chr3_3:65946699-65946718 None:intergenic 40.0%
GAAGGAGCAAAGTAATTACC+CGG + chr3_3:65946705-65946724 None:intergenic 40.0%
TAGATCGATCTTGACATCCT+CGG + chr3_3:65946901-65946920 None:intergenic 40.0%
AATTGCATCAGGGAAGAAAC+GGG + chr3_3:65946982-65947001 None:intergenic 40.0%
TTCCGTGGAAGAAACGAATT+AGG - chr3_3:65947103-65947122 Msa0465550:intron 40.0%
TGAGCTAGACTTTGTGTGTT+TGG - chr3_3:65947151-65947170 Msa0465550:intron 40.0%
GGCATTCAATTAATTACGGG+AGG - chr3_3:65947172-65947191 Msa0465550:intron 40.0%
AGACTGTTTGGGAGAACTTA+TGG - chr3_3:65947260-65947279 Msa0465550:intron 40.0%
CATTAGGCATGAACACTTCT+AGG - chr3_3:65947728-65947747 Msa0465550:intron 40.0%
GTCGTCAAGAAAAGTTGGAT+AGG + chr3_3:65947832-65947851 None:intergenic 40.0%
CTTGACGACTTGAAATTAGG+AGG - chr3_3:65947843-65947862 Msa0465550:intron 40.0%
AGAAGTAACTCAACAATGGG+AGG - chr3_3:65947971-65947990 Msa0465550:intron 40.0%
TCAACAATGGGAGGATGATT+GGG - chr3_3:65947980-65947999 Msa0465550:intron 40.0%
ATTTCTCTGTTCAGCTGAGA+AGG - chr3_3:65948024-65948043 Msa0465550:intron 40.0%
TTTCTCTGTTCAGCTGAGAA+GGG - chr3_3:65948025-65948044 Msa0465550:intron 40.0%
AAACAAAAATAGCCAGCAGG+TGG + chr3_3:65948081-65948100 None:intergenic 40.0%
! TCTGAAGAGCGTGAAAAACT+TGG + chr3_3:65946568-65946587 None:intergenic 40.0%
ATGAACGATAAACCTTGGAG+TGG + chr3_3:65946667-65946686 None:intergenic 40.0%
GCAAAGTAATTACCCGGTAT+TGG + chr3_3:65946699-65946718 None:intergenic 40.0%
GAAGGAGCAAAGTAATTACC+CGG + chr3_3:65946705-65946724 None:intergenic 40.0%
TAGATCGATCTTGACATCCT+CGG + chr3_3:65946901-65946920 None:intergenic 40.0%
AATTGCATCAGGGAAGAAAC+GGG + chr3_3:65946982-65947001 None:intergenic 40.0%
TTCCGTGGAAGAAACGAATT+AGG - chr3_3:65947103-65947122 Msa0465550:intron 40.0%
TGAGCTAGACTTTGTGTGTT+TGG - chr3_3:65947151-65947170 Msa0465550:intron 40.0%
GGCATTCAATTAATTACGGG+AGG - chr3_3:65947172-65947191 Msa0465550:intron 40.0%
AGACTGTTTGGGAGAACTTA+TGG - chr3_3:65947260-65947279 Msa0465550:intron 40.0%
CATTAGGCATGAACACTTCT+AGG - chr3_3:65947728-65947747 Msa0465550:intron 40.0%
GTCGTCAAGAAAAGTTGGAT+AGG + chr3_3:65947832-65947851 None:intergenic 40.0%
CTTGACGACTTGAAATTAGG+AGG - chr3_3:65947843-65947862 Msa0465550:intron 40.0%
AGAAGTAACTCAACAATGGG+AGG - chr3_3:65947971-65947990 Msa0465550:intron 40.0%
TCAACAATGGGAGGATGATT+GGG - chr3_3:65947980-65947999 Msa0465550:intron 40.0%
ATTTCTCTGTTCAGCTGAGA+AGG - chr3_3:65948024-65948043 Msa0465550:intron 40.0%
TTTCTCTGTTCAGCTGAGAA+GGG - chr3_3:65948025-65948044 Msa0465550:intron 40.0%
AAACAAAAATAGCCAGCAGG+TGG + chr3_3:65948081-65948100 None:intergenic 40.0%
CGATAAACCTTGGAGTGGTT+AGG + chr3_3:65946662-65946681 None:intergenic 45.0%
ATGCCACTACTCTCTTCTCA+TGG - chr3_3:65947688-65947707 Msa0465550:intron 45.0%
TGCCACTACTCTCTTCTCAT+GGG - chr3_3:65947689-65947708 Msa0465550:intron 45.0%
CTCAACAATGGGAGGATGAT+TGG - chr3_3:65947979-65947998 Msa0465550:intron 45.0%
! GGTATCTGAGACTTTGAGCT+CGG - chr3_3:65948131-65948150 Msa0465550:exon 45.0%
CGATAAACCTTGGAGTGGTT+AGG + chr3_3:65946662-65946681 None:intergenic 45.0%
ATGCCACTACTCTCTTCTCA+TGG - chr3_3:65947688-65947707 Msa0465550:intron 45.0%
TGCCACTACTCTCTTCTCAT+GGG - chr3_3:65947689-65947708 Msa0465550:intron 45.0%
CTCAACAATGGGAGGATGAT+TGG - chr3_3:65947979-65947998 Msa0465550:intron 45.0%
! GGTATCTGAGACTTTGAGCT+CGG - chr3_3:65948131-65948150 Msa0465550:exon 45.0%
AGCGAAACCTAACCACTCCA+AGG - chr3_3:65946652-65946671 Msa0465550:three_prime_UTR 50.0%
ATCCATGGCGACTGAAGCAA+AGG - chr3_3:65946869-65946888 Msa0465550:three_prime_UTR 50.0%
CACCCATGAGAAGAGAGTAG+TGG + chr3_3:65947694-65947713 None:intergenic 50.0%
ACTTGCAGAGTGGGATGACA+TGG - chr3_3:65947938-65947957 Msa0465550:intron 50.0%
AGTGGGATGACATGGAGGAA+GGG - chr3_3:65947946-65947965 Msa0465550:intron 50.0%
TGTTCAGCTGAGAAGGGAGT+TGG - chr3_3:65948031-65948050 Msa0465550:intron 50.0%
AGCGAAACCTAACCACTCCA+AGG - chr3_3:65946652-65946671 Msa0465550:three_prime_UTR 50.0%
ATCCATGGCGACTGAAGCAA+AGG - chr3_3:65946869-65946888 Msa0465550:three_prime_UTR 50.0%
CACCCATGAGAAGAGAGTAG+TGG + chr3_3:65947694-65947713 None:intergenic 50.0%
ACTTGCAGAGTGGGATGACA+TGG - chr3_3:65947938-65947957 Msa0465550:intron 50.0%
AGTGGGATGACATGGAGGAA+GGG - chr3_3:65947946-65947965 Msa0465550:intron 50.0%
TGTTCAGCTGAGAAGGGAGT+TGG - chr3_3:65948031-65948050 Msa0465550:intron 50.0%
AGCCTTTGCTTCAGTCGCCA+TGG + chr3_3:65946874-65946893 None:intergenic 55.0%
TGAAGCAAAGGCTGTGACCG+AGG - chr3_3:65946881-65946900 Msa0465550:three_prime_UTR 55.0%
TGCAGAGTGGGATGACATGG+AGG - chr3_3:65947941-65947960 Msa0465550:intron 55.0%
GAGTGGGATGACATGGAGGA+AGG - chr3_3:65947945-65947964 Msa0465550:intron 55.0%
AGCCTTTGCTTCAGTCGCCA+TGG + chr3_3:65946874-65946893 None:intergenic 55.0%
TGAAGCAAAGGCTGTGACCG+AGG - chr3_3:65946881-65946900 Msa0465550:three_prime_UTR 55.0%
TGCAGAGTGGGATGACATGG+AGG - chr3_3:65947941-65947960 Msa0465550:intron 55.0%
GAGTGGGATGACATGGAGGA+AGG - chr3_3:65947945-65947964 Msa0465550:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 65946562 65948457 65946562 ID=Msa0465550;Name=Msa0465550
chr3_3 mRNA 65946562 65948457 65946562 ID=Msa0465550-mRNA-1;Parent=Msa0465550;Name=Msa0465550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158|1|1|1|0.5|0.33|3|381|73
chr3_3 exon 65946562 65947073 65946562 ID=Msa0465550-mRNA-1:exon:14793;Parent=Msa0465550-mRNA-1
chr3_3 exon 65948056 65948160 65948056 ID=Msa0465550-mRNA-1:exon:14792;Parent=Msa0465550-mRNA-1
chr3_3 exon 65948314 65948457 65948314 ID=Msa0465550-mRNA-1:exon:14791;Parent=Msa0465550-mRNA-1
chr3_3 five_prime_UTR 65948314 65948457 65948314 ID=Msa0465550-mRNA-1:five_prime_utr;Parent=Msa0465550-mRNA-1
chr3_3 five_prime_UTR 65948147 65948160 65948147 ID=Msa0465550-mRNA-1:five_prime_utr;Parent=Msa0465550-mRNA-1
chr3_3 CDS 65948056 65948146 65948056 ID=Msa0465550-mRNA-1:cds;Parent=Msa0465550-mRNA-1
chr3_3 CDS 65946943 65947073 65946943 ID=Msa0465550-mRNA-1:cds;Parent=Msa0465550-mRNA-1
chr3_3 three_prime_UTR 65946562 65946942 65946562 ID=Msa0465550-mRNA-1:three_prime_utr;Parent=Msa0465550-mRNA-1
Gene Sequence

>Msa0465550

ATGGCGACTGAAGCAAAGGCTGTGACCGAGGATGTCAAGATCGATCTATTCGAAGACGATGATGAGTTCGAAGAGTTTGAAATCAATGAAGAGTGGGATGACATGGAGGAAGGGAAAGAAGTAACTCAACAATGGGAGGATGATTGGGATGATGATGATGTTAGCGATGATTTCTCTGTTCAGCTGAGAAGGGAGTTGGAGAAGACTACTGATAAGAATTAA

Protein sequence

>Msa0465550

MATEAKAVTEDVKIDLFEDDDEFEEFEINEEWDDMEEGKEVTQQWEDDWDDDDVSDDFSVQLRRELEKTTDKN*