Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039330 | Msa0815990 | 0.831081 | 2.043071e-55 | -8.615850e-47 |
| Msa0076320 | Msa0815990 | 0.816842 | 4.488201e-52 | -8.615850e-47 |
| Msa0090100 | Msa0815990 | 0.806684 | 7.299363e-50 | -8.615850e-47 |
| Msa0621790 | Msa0815990 | 0.803134 | 4.029435e-49 | -8.615850e-47 |
| Msa0641670 | Msa0815990 | 0.800467 | 1.422020e-48 | -8.615850e-47 |
| Msa0657970 | Msa0815990 | 0.819724 | 9.991392e-53 | -8.615850e-47 |
| Msa0673460 | Msa0815990 | 0.842232 | 2.931492e-58 | -8.615850e-47 |
| Msa0693380 | Msa0815990 | 0.823242 | 1.538856e-53 | -8.615850e-47 |
| Msa0736190 | Msa0815990 | 0.957943 | 7.965522e-116 | -8.615850e-47 |
| Msa0773840 | Msa0815990 | 0.811021 | 8.620605e-51 | -8.615850e-47 |
| Msa0795720 | Msa0815990 | 0.804583 | 2.014796e-49 | -8.615850e-47 |
| Msa0802830 | Msa0815990 | 0.810463 | 1.138607e-50 | -8.615850e-47 |
| Msa0815990 | Msa0901500 | 0.807889 | 4.055036e-50 | -8.615850e-47 |
| Msa0815990 | Msa1014540 | 0.813335 | 2.696322e-51 | -8.615850e-47 |
| Msa0815990 | Msa1082500 | 0.836529 | 8.870162e-57 | -8.615850e-47 |
| Msa0815990 | Msa1090260 | 0.814664 | 1.373028e-51 | -8.615850e-47 |
| Msa0815990 | Msa1228590 | 0.834492 | 2.904522e-56 | -8.615850e-47 |
| Msa0815990 | Msa1233500 | 0.825958 | 3.527847e-54 | -8.615850e-47 |
| Msa0815990 | Msa1249490 | 0.803434 | 3.491903e-49 | -8.615850e-47 |
| Msa0815990 | Msa1288420 | 0.803419 | 3.517870e-49 | -8.615850e-47 |
| Msa0815990 | Msa1291660 | 0.811839 | 5.728417e-51 | -8.615850e-47 |
| Msa0815990 | Msa1314170 | 0.804986 | 1.659518e-49 | -8.615850e-47 |
| Msa0815990 | Msa1331320 | 0.804756 | 1.853901e-49 | -8.615850e-47 |
| Msa0815990 | Msa1333410 | 0.816029 | 6.827413e-52 | -8.615850e-47 |
| Msa0815990 | Msa1357530 | 0.818480 | 1.917760e-52 | -8.615850e-47 |
| Msa0815990 | Msa1362880 | 0.812662 | 3.787001e-51 | -8.615850e-47 |
| Msa0815990 | Msa1384350 | 0.800890 | 1.165508e-48 | -8.615850e-47 |
| Msa0815990 | Msa1392260 | 0.807484 | 4.942174e-50 | -8.615850e-47 |
| Msa0815990 | Msa1429900 | 0.803625 | 3.188306e-49 | -8.615850e-47 |
| Msa0815990 | Msa1430680 | 0.815539 | 8.777449e-52 | -8.615850e-47 |
| Msa0815990 | Msa1431640 | 0.802232 | 6.186785e-49 | -8.615850e-47 |
| Msa0815990 | Msa1440940 | 0.805180 | 1.511998e-49 | -8.615850e-47 |
| Msa0182570 | Msa0815990 | 0.801409 | 9.127531e-49 | -8.615850e-47 |
| Msa0188830 | Msa0815990 | 0.811726 | 6.060640e-51 | -8.615850e-47 |
| Msa0220580 | Msa0815990 | 0.828456 | 8.902337e-55 | -8.615850e-47 |
| Msa0373930 | Msa0815990 | 0.816202 | 6.244418e-52 | -8.615850e-47 |
| Msa0376590 | Msa0815990 | 0.807115 | 5.917128e-50 | -8.615850e-47 |
| Msa0309770 | Msa0815990 | 0.811829 | 5.757528e-51 | -8.615850e-47 |
| Msa0484780 | Msa0815990 | 0.826315 | 2.902806e-54 | -8.615850e-47 |
| Msa0512900 | Msa0815990 | 0.803292 | 3.737492e-49 | -8.615850e-47 |
| Msa0535630 | Msa0815990 | 0.802872 | 4.565776e-49 | -8.615850e-47 |
| Msa0538930 | Msa0815990 | 0.805962 | 1.036003e-49 | -8.615850e-47 |
| Msa0545210 | Msa0815990 | 0.820884 | 5.417233e-53 | -8.615850e-47 |
| Msa0558690 | Msa0815990 | 0.823464 | 1.365915e-53 | -8.615850e-47 |
| Msa0562440 | Msa0815990 | 0.815912 | 7.249175e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGAAATATGAAGTTTAAA+TGG | 0.149590 | 5_3:+49788614 | None:intergenic |
| CTCCAGCTGGAGTCAGATTT+TGG | 0.184824 | 5_3:-49791897 | Msa0815990:CDS |
| GTCCTAATTTGCAGAATAAA+TGG | 0.187586 | 5_3:-49789353 | Msa0815990:intron |
| ACTTATATATGTTATGAAAT+TGG | 0.220164 | 5_3:+49792761 | None:intergenic |
| TATGAGAAATTTGTGTATTT+AGG | 0.278442 | 5_3:-49791863 | Msa0815990:CDS |
| ACCCGTACAGTCTTCTTCTT+AGG | 0.292295 | 5_3:+49789294 | None:intergenic |
| AATTGGATAACAAAGTTAAA+TGG | 0.292488 | 5_3:-49791976 | Msa0815990:CDS |
| AATTCTTGGTTTAGGTGTAT+TGG | 0.299299 | 5_3:-49788922 | Msa0815990:three_prime_UTR |
| TTCAGCATCAATTCCAAATC+TGG | 0.309760 | 5_3:+49789541 | None:intergenic |
| TTTGGGCAGGCATTGGGCAT+TGG | 0.319761 | 5_3:-49790020 | Msa0815990:intron |
| TCTACAGTGGACTCCAGATT+TGG | 0.325328 | 5_3:-49789554 | Msa0815990:intron |
| TGTAAGCTGGCTAGGTCTAA+TGG | 0.330328 | 5_3:-49790234 | Msa0815990:CDS |
| TTGGGCAGGCATTGGGCATT+GGG | 0.331705 | 5_3:-49790019 | Msa0815990:intron |
| GTTCGAAAATTGCTGTTAAG+AGG | 0.349529 | 5_3:+49789079 | None:intergenic |
| TTTCCATCGACAGACTTCTT+TGG | 0.350193 | 5_3:-49789175 | Msa0815990:intron |
| TATAGTAGTGCATGTGGATT+AGG | 0.356282 | 5_3:-49788715 | Msa0815990:three_prime_UTR |
| TATAGTAGTGCATGTGGATT+AGG | 0.356282 | 5_3:-49788777 | Msa0815990:three_prime_UTR |
| GAAGACGCTGTGGCAGACTA+TGG | 0.357365 | 5_3:-49791929 | Msa0815990:CDS |
| TTCTGCTGTGCCTGCTGTGA+TGG | 0.363537 | 5_3:-49789121 | Msa0815990:CDS |
| TGTGTCTTTGGGCAGGCATT+GGG | 0.368874 | 5_3:-49790026 | Msa0815990:intron |
| CCAGGCTCAGCAGAAGAATT+AGG | 0.378579 | 5_3:+49789147 | None:intergenic |
| TAAATCAGAATCCATCCTTA+AGG | 0.383863 | 5_3:-49789479 | Msa0815990:CDS |
| GTAAGCTGGCTAGGTCTAAT+GGG | 0.391663 | 5_3:-49790233 | Msa0815990:CDS |
| AATTTGTGTATTTAGGCATT+GGG | 0.396459 | 5_3:-49791856 | Msa0815990:CDS |
| GAAGTCTGTGGCATTGGAAT+TGG | 0.398089 | 5_3:-49791993 | Msa0815990:CDS |
| TCCTAATTTGCAGAATAAAT+GGG | 0.404078 | 5_3:-49789352 | Msa0815990:intron |
| AGGAAATATGAAGTTTAAAT+GGG | 0.410225 | 5_3:+49788615 | None:intergenic |
| CAAAACTCAACCACTCCTTC+CGG | 0.418932 | 5_3:+49788975 | None:intergenic |
| AAATTTGTGTATTTAGGCAT+TGG | 0.429814 | 5_3:-49791857 | Msa0815990:CDS |
| GGGAAGCCCGTCAGCTAGCT+AGG | 0.436166 | 5_3:-49790155 | Msa0815990:CDS |
| TTGCTCGTGAATGTGATTCA+TGG | 0.439097 | 5_3:-49788892 | Msa0815990:three_prime_UTR |
| CAAGATGAAGTCTGTGGCAT+TGG | 0.445821 | 5_3:-49791999 | Msa0815990:CDS |
| CTTGTCTGCTGCAGCTTAAG+TGG | 0.445957 | 5_3:-49790263 | Msa0815990:intron |
| AGAGGCAGCAACAAATTCTC+AGG | 0.446494 | 5_3:-49792650 | Msa0815990:intron |
| GGCTAGGTCTAATGGGTTTG+AGG | 0.450577 | 5_3:-49790226 | Msa0815990:CDS |
| GAGAGATCAGAGACGGTTAG+AGG | 0.451933 | 5_3:-49792668 | Msa0815990:five_prime_UTR |
| CCTAATTCTTCTGCTGAGCC+TGG | 0.453232 | 5_3:-49789147 | Msa0815990:CDS |
| CTAGGTCTAATGCAGGGACT+CGG | 0.461461 | 5_3:-49790137 | Msa0815990:CDS |
| ACAAACAAAGTTCCTCTACT+TGG | 0.463453 | 5_3:+49792692 | None:intergenic |
| AGCCAAAATCTGACTCCAGC+TGG | 0.478708 | 5_3:+49791895 | None:intergenic |
| TGGTGTATATACTATATAGT+GGG | 0.494321 | 5_3:-49788872 | Msa0815990:three_prime_UTR |
| ATGGTGTATATACTATATAG+TGG | 0.495581 | 5_3:-49788873 | Msa0815990:three_prime_UTR |
| GAGCAAAATCAACATCCTTA+AGG | 0.503039 | 5_3:+49789464 | None:intergenic |
| GGGAAGCTTGTAAGCTGGCT+AGG | 0.506798 | 5_3:-49790242 | Msa0815990:CDS |
| GCAGGCACAGCAGAAGTACC+AGG | 0.511520 | 5_3:+49789129 | None:intergenic |
| TAGGTCTAATGCAGGGACTC+GGG | 0.513819 | 5_3:-49790136 | Msa0815990:CDS |
| TAACATATATAAGTTCCTCT+TGG | 0.523535 | 5_3:-49792752 | Msa0815990:five_prime_UTR |
| TACTGCGAATGCAGGTATCA+AGG | 0.530740 | 5_3:-49789049 | Msa0815990:CDS |
| CATTGGGGAACGTGAACTAA+AGG | 0.533880 | 5_3:-49791840 | Msa0815990:intron |
| CAGATGGTTACTGCGAATGC+AGG | 0.537426 | 5_3:-49789057 | Msa0815990:CDS |
| ATCCTAAGAAGAAGACTGTA+CGG | 0.543822 | 5_3:-49789296 | Msa0815990:CDS |
| GAGTAGCTAGCCGGAAGGAG+TGG | 0.546791 | 5_3:-49788985 | Msa0815990:three_prime_UTR |
| CACAGAACAATAACACTCAC+TGG | 0.547496 | 5_3:+49788805 | None:intergenic |
| TTGTCTGCTGCAGCTTAAGT+GGG | 0.549453 | 5_3:-49790262 | Msa0815990:intron |
| ATGGATCTGATGACTCCAGC+TGG | 0.553415 | 5_3:-49791910 | Msa0815990:CDS |
| CAGCTAGCTAGGTCTAATGC+AGG | 0.557805 | 5_3:-49790144 | Msa0815990:CDS |
| GATGGGAAAGAAGTATAGAG+AGG | 0.558505 | 5_3:+49792870 | None:intergenic |
| AAAAGCACAAAAGCTGAAGA+GGG | 0.560388 | 5_3:-49790175 | Msa0815990:CDS |
| GTTAAGAGGTTCACAACAGC+AGG | 0.566554 | 5_3:+49789093 | None:intergenic |
| CCTAATTTGCAGAATAAATG+GGG | 0.566683 | 5_3:-49789351 | Msa0815990:intron |
| TTTGTACATAGCAGCAGTGG+TGG | 0.567461 | 5_3:+49788667 | None:intergenic |
| CATCATGAGTCCATTTGTGA+AGG | 0.572977 | 5_3:+49789440 | None:intergenic |
| AAAATCAACATCCTTAAGGA+TGG | 0.578151 | 5_3:+49789468 | None:intergenic |
| TGAAGGATAGAAAGTGAAGG+TGG | 0.579969 | 5_3:-49789011 | Msa0815990:exon |
| GCAGGCACATCCATCACAGC+AGG | 0.580554 | 5_3:+49789111 | None:intergenic |
| CAGTGAGTGTTATTGTTCTG+TGG | 0.584724 | 5_3:-49788804 | Msa0815990:three_prime_UTR |
| AAAGATGCAGTAGATATACA+TGG | 0.585581 | 5_3:-49789520 | Msa0815990:CDS |
| GAATGAGTGTTATTGTTCTG+TGG | 0.587586 | 5_3:-49788742 | Msa0815990:three_prime_UTR |
| AAGATGCTTGTTATCAGAGA+GGG | 0.590205 | 5_3:-49792790 | Msa0815990:five_prime_UTR |
| TGCTCTGCACTTCCAAGTAG+AGG | 0.593164 | 5_3:-49792704 | Msa0815990:five_prime_UTR |
| CATTGGGAAACGTGAACCAA+AGG | 0.594101 | 5_3:-49790003 | Msa0815990:intron |
| ATCATGAGTCCATTTGTGAA+GGG | 0.594860 | 5_3:+49789441 | None:intergenic |
| TCCTAAGAAGAAGACTGTAC+GGG | 0.599111 | 5_3:-49789295 | Msa0815990:CDS |
| TAAGTGGGAAGCTTGTAAGC+TGG | 0.605300 | 5_3:-49790247 | Msa0815990:CDS |
| AGGTGGAAAGAGTAGCTAGC+CGG | 0.605811 | 5_3:-49788994 | Msa0815990:three_prime_UTR |
| ATGGACTCATGATGCACTGA+GGG | 0.605994 | 5_3:-49789431 | Msa0815990:intron |
| GTTTGTCGAGAGATCAGAGA+CGG | 0.606401 | 5_3:-49792675 | Msa0815990:five_prime_UTR |
| ATTTGTGTATTTAGGCATTG+GGG | 0.609636 | 5_3:-49791855 | Msa0815990:CDS |
| TGCAGTAGATATACATGGGG+AGG | 0.612105 | 5_3:-49789515 | Msa0815990:CDS |
| GGTTAATGAAAACATCAGAA+AGG | 0.612698 | 5_3:-49789274 | Msa0815990:intron |
| AGGTCTAATGCAGGGACTCG+GGG | 0.616145 | 5_3:-49790135 | Msa0815990:CDS |
| GTCTCTGCTTGAAGACGCTG+TGG | 0.621674 | 5_3:-49791939 | Msa0815990:CDS |
| TCATGAGTCCATTTGTGAAG+GGG | 0.624080 | 5_3:+49789442 | None:intergenic |
| GGTGTCTATAGTAGTGCATG+TGG | 0.631425 | 5_3:-49788721 | Msa0815990:three_prime_UTR |
| GGTGTCTATAGTAGTGCATG+TGG | 0.631425 | 5_3:-49788783 | Msa0815990:three_prime_UTR |
| CATTAGACCTAGCTAGCTGA+CGG | 0.635381 | 5_3:+49790148 | None:intergenic |
| AAGATGCAGTAGATATACAT+GGG | 0.637221 | 5_3:-49789519 | Msa0815990:CDS |
| ATTAGACCTAGCTAGCTGAC+GGG | 0.642091 | 5_3:+49790149 | None:intergenic |
| GGTGTATATACTATATAGTG+GGG | 0.649578 | 5_3:-49788871 | Msa0815990:three_prime_UTR |
| AGCTAGCTAGGTCTAATGCA+GGG | 0.656329 | 5_3:-49790143 | Msa0815990:CDS |
| CAAGATGCTTGTTATCAGAG+AGG | 0.661100 | 5_3:-49792791 | Msa0815990:five_prime_UTR |
| ACTCTAGAAAGTTCGCCAAG+AGG | 0.661447 | 5_3:+49792737 | None:intergenic |
| GGAAAGAGTAGCTAGCCGGA+AGG | 0.663905 | 5_3:-49788990 | Msa0815990:three_prime_UTR |
| CTAATTTGCAGAATAAATGG+GGG | 0.682270 | 5_3:-49789350 | Msa0815990:intron |
| AGATCGCAAGATGAAGTCTG+TGG | 0.683681 | 5_3:-49792005 | Msa0815990:CDS |
| AGATGCAGTAGATATACATG+GGG | 0.716090 | 5_3:-49789518 | Msa0815990:CDS |
| AATGGACTCATGATGCACTG+AGG | 0.724301 | 5_3:-49789432 | Msa0815990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAGAAAAAATAATAAA+AGG | + | chr5_3:49788625-49788644 | None:intergenic | 10.0% |
| !!! | TTATTTTATTTTTTACCTTT+GGG | + | chr5_3:49791450-49791469 | None:intergenic | 10.0% |
| !!! | TTTATTTTATTTTTTACCTT+TGG | + | chr5_3:49791451-49791470 | None:intergenic | 10.0% |
| !! | ACTTATATATGTTATGAAAT+TGG | + | chr5_3:49788783-49788802 | None:intergenic | 15.0% |
| !!! | TTTACTTTTTATACATGAAT+TGG | - | chr5_3:49789767-49789786 | Msa0815990:intron | 15.0% |
| !! | AATTGTTATAGATTAATTAG+TGG | - | chr5_3:49790949-49790968 | Msa0815990:intron | 15.0% |
| !!! | TATTTTATTTTTTACCTTTG+GGG | + | chr5_3:49791449-49791468 | None:intergenic | 15.0% |
| !! | AATAAACAAACTACTATATA+TGG | - | chr5_3:49791465-49791484 | Msa0815990:intron | 15.0% |
| !! | TTGAATTATTTGATAGAAAA+TGG | - | chr5_3:49791866-49791885 | Msa0815990:CDS | 15.0% |
| !!! | ATAAGTTTTAAAAATACAGA+TGG | - | chr5_3:49792299-49792318 | Msa0815990:intron | 15.0% |
| !!! | TAAGTTTTAAAAATACAGAT+GGG | - | chr5_3:49792300-49792319 | Msa0815990:intron | 15.0% |
| !! | AAACAAATAAAAGAAAAACG+AGG | + | chr5_3:49789302-49789321 | None:intergenic | 20.0% |
| !! | GTAAATATTGAAACAAAAGA+AGG | + | chr5_3:49789329-49789348 | None:intergenic | 20.0% |
| !!! | TCGAAAATTATTTTTCGTTT+TGG | - | chr5_3:49789385-49789404 | Msa0815990:intron | 20.0% |
| !! | AATTGGATAACAAAGTTAAA+TGG | - | chr5_3:49789565-49789584 | Msa0815990:intron | 20.0% |
| !! | TATGAGAAATTTGTGTATTT+AGG | - | chr5_3:49789678-49789697 | Msa0815990:intron | 20.0% |
| !!! | TAATATCGATTCAAAATTTG+AGG | + | chr5_3:49789883-49789902 | None:intergenic | 20.0% |
| !! | TATAAAAAAGAACATAGCTT+GGG | - | chr5_3:49790073-49790092 | Msa0815990:intron | 20.0% |
| !!! | AAATGTGTTTAAGATTGAAA+AGG | + | chr5_3:49790236-49790255 | None:intergenic | 20.0% |
| !!! | ATTTTGTTATTGGAAAAGAT+TGG | + | chr5_3:49790452-49790471 | None:intergenic | 20.0% |
| !!! | TGAACAAGTTATTTTGTTAT+TGG | + | chr5_3:49790462-49790481 | None:intergenic | 20.0% |
| !!! | TATTTTCTTCTTCATAACAA+AGG | + | chr5_3:49790557-49790576 | None:intergenic | 20.0% |
| !!! | TGGTTCTTAAATTTAGTTTA+TGG | + | chr5_3:49790641-49790660 | None:intergenic | 20.0% |
| !!! | AATAAAGCAAGTTAGTTTTT+TGG | + | chr5_3:49791100-49791119 | None:intergenic | 20.0% |
| !!! | ACTAAAAAAAGATAATGGTT+GGG | - | chr5_3:49792216-49792235 | Msa0815990:intron | 20.0% |
| !! | CAAGAATTTAGAAAAATCAT+AGG | + | chr5_3:49792607-49792626 | None:intergenic | 20.0% |
| !!! | CTATGATTTTTCTAAATTCT+TGG | - | chr5_3:49792605-49792624 | Msa0815990:intron | 20.0% |
| !!! | TTTTTCTAAATTCTTGGTTT+AGG | - | chr5_3:49792611-49792630 | Msa0815990:intron | 20.0% |
| !!! | TGTTCTTAATTTCTTGTTTT+AGG | - | chr5_3:49792695-49792714 | Msa0815990:five_prime_UTR | 20.0% |
| !!! | TTTTAGTTGTTAGTAGTGAT+GGG | + | chr5_3:49788691-49788710 | None:intergenic | 25.0% |
| ! | TAACATATATAAGTTCCTCT+TGG | - | chr5_3:49788789-49788808 | Msa0815990:three_prime_UTR | 25.0% |
| !!! | TTTCATCATTGATTCGAATT+AGG | + | chr5_3:49789172-49789191 | None:intergenic | 25.0% |
| !! | GAGAATAATTTTACGAATCT+AGG | - | chr5_3:49789194-49789213 | Msa0815990:intron | 25.0% |
| !! | TTTTGTGTCAATTAGGTTTT+CGG | - | chr5_3:49789223-49789242 | Msa0815990:intron | 25.0% |
| ! | CAAAACGAAAAATAATGCAT+CGG | + | chr5_3:49789277-49789296 | None:intergenic | 25.0% |
| ! | AAATTTGTGTATTTAGGCAT+TGG | - | chr5_3:49789684-49789703 | Msa0815990:intron | 25.0% |
| ! | AATTTGTGTATTTAGGCATT+GGG | - | chr5_3:49789685-49789704 | Msa0815990:intron | 25.0% |
| ! | ATTGTGTATAATAGCTAGAA+TGG | + | chr5_3:49789967-49789986 | None:intergenic | 25.0% |
| ! | GTATAAAAAAGAACATAGCT+TGG | - | chr5_3:49790072-49790091 | Msa0815990:intron | 25.0% |
| !! | TAATCATTCATTTGTTGCAA+AGG | - | chr5_3:49790123-49790142 | Msa0815990:CDS | 25.0% |
| !! | TAAAGTACTATGTTAGACTT+TGG | + | chr5_3:49790326-49790345 | None:intergenic | 25.0% |
| !! | ATATGACATTTTGTTGCAAT+TGG | + | chr5_3:49790523-49790542 | None:intergenic | 25.0% |
| !!! | GTTTATGGTTTTTTTGTTGT+AGG | + | chr5_3:49790626-49790645 | None:intergenic | 25.0% |
| !! | AAACTTTTTGAATTATGCCT+CGG | - | chr5_3:49790890-49790909 | Msa0815990:intron | 25.0% |
| ! | ATTGAATGAAAAATGAACAC+AGG | - | chr5_3:49790914-49790933 | Msa0815990:intron | 25.0% |
| ! | TGTGATTGATTAGAATGTTA+AGG | - | chr5_3:49791169-49791188 | Msa0815990:intron | 25.0% |
| !! | TTGTTCTAATTTTGTGTCTT+TGG | - | chr5_3:49791503-49791522 | Msa0815990:intron | 25.0% |
| !! | TGTTCTAATTTTGTGTCTTT+GGG | - | chr5_3:49791504-49791523 | Msa0815990:intron | 25.0% |
| !!! | TTATTTTTACCTTGCTCAAA+AGG | + | chr5_3:49791671-49791690 | None:intergenic | 25.0% |
| ! | ATATGAAAATTACATGAACC+TGG | - | chr5_3:49791726-49791745 | Msa0815990:intron | 25.0% |
| !! | GTAGTTTACTATTAGTTTGA+TGG | - | chr5_3:49791134-49791153 | Msa0815990:intron | 25.0% |
| ! | GATTAAAATGCTATCTATGA+TGG | - | chr5_3:49791888-49791907 | Msa0815990:CDS | 25.0% |
| ! | AAACAAACTATCTATCTATG+AGG | - | chr5_3:49791920-49791939 | Msa0815990:CDS | 25.0% |
| ! | AACAAACTATCTATCTATGA+GGG | - | chr5_3:49791921-49791940 | Msa0815990:CDS | 25.0% |
| !! | TATCTGTTCTGATTTTTACA+TGG | - | chr5_3:49791961-49791980 | Msa0815990:CDS | 25.0% |
| ! | AGAAAAACACTATAATGAGA+AGG | + | chr5_3:49792153-49792172 | None:intergenic | 25.0% |
| !! | TCCTAATTTGCAGAATAAAT+GGG | - | chr5_3:49792189-49792208 | Msa0815990:intron | 25.0% |
| !! | GACTAAAAAAAGATAATGGT+TGG | - | chr5_3:49792215-49792234 | Msa0815990:intron | 25.0% |
| ! | ATGGTGTATATACTATATAG+TGG | - | chr5_3:49792668-49792687 | Msa0815990:five_prime_UTR | 25.0% |
| ! | TGGTGTATATACTATATAGT+GGG | - | chr5_3:49792669-49792688 | Msa0815990:five_prime_UTR | 25.0% |
| !! | GTTTAAATGGGAAAAGTTTT+TGG | + | chr5_3:49792917-49792936 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTGTTAGTAGTGA+TGG | + | chr5_3:49788692-49788711 | None:intergenic | 30.0% |
| ! | GTTTCTGTTTTGTGTCAATT+AGG | - | chr5_3:49789216-49789235 | Msa0815990:intron | 30.0% |
| !! | CGATGCATTATTTTTCGTTT+TGG | - | chr5_3:49789275-49789294 | Msa0815990:CDS | 30.0% |
| ! | ATTACAGTGTATGCTTTGTT+AGG | - | chr5_3:49789508-49789527 | Msa0815990:CDS | 30.0% |
| ! | ATTTGTGTATTTAGGCATTG+GGG | - | chr5_3:49789686-49789705 | Msa0815990:intron | 30.0% |
| ! | ATAGCTAGAATGGATTCATT+TGG | + | chr5_3:49789957-49789976 | None:intergenic | 30.0% |
| !!! | TCGCAGCAACATTTTTTTAT+AGG | + | chr5_3:49790043-49790062 | None:intergenic | 30.0% |
| GCAACAAATGAATGATTAAC+AGG | + | chr5_3:49790121-49790140 | None:intergenic | 30.0% | |
| CTACAGTGAAGAAATGAAAT+CGG | + | chr5_3:49790191-49790210 | None:intergenic | 30.0% | |
| CTAACATAGTACTTTAACAG+AGG | - | chr5_3:49790330-49790349 | Msa0815990:intron | 30.0% | |
| TTCTTCTTCTTCTTCTTTGT+TGG | + | chr5_3:49790661-49790680 | None:intergenic | 30.0% | |
| !! | TCATTTTTCATTCAATACCG+AGG | + | chr5_3:49790910-49790929 | None:intergenic | 30.0% |
| !!! | AAGTTAGTTTTTTGGCAAGT+TGG | + | chr5_3:49791092-49791111 | None:intergenic | 30.0% |
| TTGTGATGATTAGAAGGTTA+AGG | - | chr5_3:49791825-49791844 | Msa0815990:intron | 30.0% | |
| ! | TTTTACATGGTATTCTACAG+TGG | - | chr5_3:49791974-49791993 | Msa0815990:CDS | 30.0% |
| AAAGATGCAGTAGATATACA+TGG | - | chr5_3:49792021-49792040 | Msa0815990:intron | 30.0% | |
| AAGATGCAGTAGATATACAT+GGG | - | chr5_3:49792022-49792041 | Msa0815990:intron | 30.0% | |
| TAAATCAGAATCCATCCTTA+AGG | - | chr5_3:49792062-49792081 | Msa0815990:intron | 30.0% | |
| AAAATCAACATCCTTAAGGA+TGG | + | chr5_3:49792076-49792095 | None:intergenic | 30.0% | |
| ACACTATAATGAGAAGGAAA+AGG | + | chr5_3:49792147-49792166 | None:intergenic | 30.0% | |
| ! | GTCCTAATTTGCAGAATAAA+TGG | - | chr5_3:49792188-49792207 | Msa0815990:intron | 30.0% |
| ! | CCTAATTTGCAGAATAAATG+GGG | - | chr5_3:49792190-49792209 | Msa0815990:intron | 30.0% |
| ! | CTAATTTGCAGAATAAATGG+GGG | - | chr5_3:49792191-49792210 | Msa0815990:intron | 30.0% |
| GGGAGACTAAAAAAAGATAA+TGG | - | chr5_3:49792211-49792230 | Msa0815990:intron | 30.0% | |
| ! | AAAAAGATAATGGTTGGGTT+AGG | - | chr5_3:49792221-49792240 | Msa0815990:intron | 30.0% |
| GGTTAATGAAAACATCAGAA+AGG | - | chr5_3:49792267-49792286 | Msa0815990:intron | 30.0% | |
| TTTAAAAATACAGATGGGAC+TGG | - | chr5_3:49792305-49792324 | Msa0815990:intron | 30.0% | |
| !! | TTTTGAAGGATAGAAAGTGA+AGG | - | chr5_3:49792527-49792546 | Msa0815990:intron | 30.0% |
| AATTCTTGGTTTAGGTGTAT+TGG | - | chr5_3:49792619-49792638 | Msa0815990:intron | 30.0% | |
| GGTGTATATACTATATAGTG+GGG | - | chr5_3:49792670-49792689 | Msa0815990:five_prime_UTR | 30.0% | |
| !! | AAGATGCTTGTTATCAGAGA+GGG | - | chr5_3:49788751-49788770 | Msa0815990:three_prime_UTR | 35.0% |
| ACAAACAAAGTTCCTCTACT+TGG | + | chr5_3:49788852-49788871 | None:intergenic | 35.0% | |
| TCCAAGAATCTCACAATCAA+TGG | - | chr5_3:49788928-49788947 | Msa0815990:three_prime_UTR | 35.0% | |
| ! | ATCGCGATTACGAATTGTTT+TGG | - | chr5_3:49789129-49789148 | Msa0815990:CDS | 35.0% |
| CGGATATACACTAATTGCAT+CGG | + | chr5_3:49789257-49789276 | None:intergenic | 35.0% | |
| ! | ATGGATTCATTTGGTGATAG+AGG | + | chr5_3:49789948-49789967 | None:intergenic | 35.0% |
| ! | TTTTCATTATCTCCCAAACC+TGG | - | chr5_3:49789989-49790008 | Msa0815990:intron | 35.0% |
| ! | TTTTCTCTATCTCCAGGTTT+GGG | + | chr5_3:49790004-49790023 | None:intergenic | 35.0% |
| ! | TTGGGTTGTTTGAGTAAGTT+AGG | - | chr5_3:49790091-49790110 | Msa0815990:intron | 35.0% |
| ! | TTGAAAAGGAAAAGCACACA+TGG | + | chr5_3:49790222-49790241 | None:intergenic | 35.0% |
| CAAAGCTGGATATTTGTTCT+AGG | + | chr5_3:49790370-49790389 | None:intergenic | 35.0% | |
| AGGAGGATATTTGTTCTATG+TGG | + | chr5_3:49790398-49790417 | None:intergenic | 35.0% | |
| AGATTGGAAGAGATAAGGAT+CGG | + | chr5_3:49790436-49790455 | None:intergenic | 35.0% | |
| GGAAAAGATTGGAAGAGATA+AGG | + | chr5_3:49790441-49790460 | None:intergenic | 35.0% | |
| ! | GACATTTTGTTGCAATTGGA+GGG | + | chr5_3:49790519-49790538 | None:intergenic | 35.0% |
| ! | TGACATTTTGTTGCAATTGG+AGG | + | chr5_3:49790520-49790539 | None:intergenic | 35.0% |
| ! | AAAAAGCACAAAAGCTGAAG+AGG | - | chr5_3:49791365-49791384 | Msa0815990:intron | 35.0% |
| ! | AAAAGCACAAAAGCTGAAGA+GGG | - | chr5_3:49791366-49791385 | Msa0815990:intron | 35.0% |
| AATCATTGAAAAAGCCCCAA+AGG | - | chr5_3:49791432-49791451 | Msa0815990:intron | 35.0% | |
| AGAAGAGAGCAAATTACCTT+TGG | + | chr5_3:49791557-49791576 | None:intergenic | 35.0% | |
| ! | TTATTCATGCCTTTTGAGCA+AGG | - | chr5_3:49791659-49791678 | Msa0815990:intron | 35.0% |
| ! | TGCTGTTTGTGATGATTAGA+AGG | - | chr5_3:49791819-49791838 | Msa0815990:intron | 35.0% |
| TTCAGCATCAATTCCAAATC+TGG | + | chr5_3:49792003-49792022 | None:intergenic | 35.0% | |
| AGATGCAGTAGATATACATG+GGG | - | chr5_3:49792023-49792042 | Msa0815990:intron | 35.0% | |
| GAGCAAAATCAACATCCTTA+AGG | + | chr5_3:49792080-49792099 | None:intergenic | 35.0% | |
| ATCATGAGTCCATTTGTGAA+GGG | + | chr5_3:49792103-49792122 | None:intergenic | 35.0% | |
| CCCCATTTATTCTGCAAATT+AGG | + | chr5_3:49792193-49792212 | None:intergenic | 35.0% | |
| ATCCTAAGAAGAAGACTGTA+CGG | - | chr5_3:49792245-49792264 | Msa0815990:intron | 35.0% | |
| ! | GTTCGAAAATTGCTGTTAAG+AGG | + | chr5_3:49792465-49792484 | None:intergenic | 35.0% |
| ! | AACAGCAATTTTCGAACAGA+TGG | - | chr5_3:49792468-49792487 | Msa0815990:intron | 35.0% |
| ! | GGAAATTGTGACTCTTTTGA+AGG | - | chr5_3:49792513-49792532 | Msa0815990:intron | 35.0% |
| TATAGTAGTGCATGTGGATT+AGG | - | chr5_3:49792764-49792783 | Msa0815990:five_prime_UTR | 35.0% | |
| ! | GAATGAGTGTTATTGTTCTG+TGG | - | chr5_3:49792799-49792818 | Msa0815990:five_prime_UTR | 35.0% |
| TATAGTAGTGCATGTGGATT+AGG | - | chr5_3:49792764-49792783 | Msa0815990:five_prime_UTR | 35.0% | |
| ! | AATTTTGTACATAGCAGCAG+TGG | + | chr5_3:49792880-49792899 | None:intergenic | 35.0% |
| ! | GATGGGAAAGAAGTATAGAG+AGG | + | chr5_3:49788674-49788693 | None:intergenic | 40.0% |
| !! | CAAGATGCTTGTTATCAGAG+AGG | - | chr5_3:49788750-49788769 | Msa0815990:three_prime_UTR | 40.0% |
| GATTGTGAGATTCTTGGAGA+AGG | + | chr5_3:49788926-49788945 | None:intergenic | 40.0% | |
| ! | GCCATTGATTGTGAGATTCT+TGG | + | chr5_3:49788932-49788951 | None:intergenic | 40.0% |
| ! | TGTGTCAATTAGGTTTTCGG+TGG | - | chr5_3:49789226-49789245 | Msa0815990:intron | 40.0% |
| ! | CTTTTCTCTATCTCCAGGTT+TGG | + | chr5_3:49790005-49790024 | None:intergenic | 40.0% |
| ! | TTGAGCTTTTCTCTATCTCC+AGG | + | chr5_3:49790010-49790029 | None:intergenic | 40.0% |
| GAAGAAGAAGAAGATGCCAA+AGG | - | chr5_3:49790672-49790691 | Msa0815990:intron | 40.0% | |
| AAGATGCCAAAGGTAGAGAT+AGG | - | chr5_3:49790682-49790701 | Msa0815990:intron | 40.0% | |
| AGAAGAAGAAGAAGCTACAC+TGG | - | chr5_3:49790733-49790752 | Msa0815990:intron | 40.0% | |
| !!! | CACTGGTTTTCAACGTTGTA+TGG | - | chr5_3:49790750-49790769 | Msa0815990:intron | 40.0% |
| TCAACGTTGTATGGTGTGAA+TGG | - | chr5_3:49790759-49790778 | Msa0815990:intron | 40.0% | |
| ! | CTAATTTTGTGTCTTTGGGC+AGG | - | chr5_3:49791508-49791527 | Msa0815990:intron | 40.0% |
| ! | ATTTTGCTCCCCTTCACAAA+TGG | - | chr5_3:49792091-49792110 | Msa0815990:intron | 40.0% |
| TCATGAGTCCATTTGTGAAG+GGG | + | chr5_3:49792102-49792121 | None:intergenic | 40.0% | |
| CATCATGAGTCCATTTGTGA+AGG | + | chr5_3:49792104-49792123 | None:intergenic | 40.0% | |
| TCCTAAGAAGAAGACTGTAC+GGG | - | chr5_3:49792246-49792265 | Msa0815990:intron | 40.0% | |
| TTTCCATCGACAGACTTCTT+TGG | - | chr5_3:49792366-49792385 | Msa0815990:intron | 40.0% | |
| TGAAGGATAGAAAGTGAAGG+TGG | - | chr5_3:49792530-49792549 | Msa0815990:intron | 40.0% | |
| TTGCTCGTGAATGTGATTCA+TGG | - | chr5_3:49792649-49792668 | Msa0815990:intron | 40.0% | |
| CACAGAACAATAACACTCAC+TGG | + | chr5_3:49792739-49792758 | None:intergenic | 40.0% | |
| ! | CAGTGAGTGTTATTGTTCTG+TGG | - | chr5_3:49792737-49792756 | Msa0815990:five_prime_UTR | 40.0% |
| ! | ACTCTAGAAAGTTCGCCAAG+AGG | + | chr5_3:49788807-49788826 | None:intergenic | 45.0% |
| GTTTGTCGAGAGATCAGAGA+CGG | - | chr5_3:49788866-49788885 | Msa0815990:three_prime_UTR | 45.0% | |
| AGAGGCAGCAACAAATTCTC+AGG | - | chr5_3:49788891-49788910 | Msa0815990:three_prime_UTR | 45.0% | |
| AGATCGCAAGATGAAGTCTG+TGG | - | chr5_3:49789536-49789555 | Msa0815990:CDS | 45.0% | |
| CAAGATGAAGTCTGTGGCAT+TGG | - | chr5_3:49789542-49789561 | Msa0815990:CDS | 45.0% | |
| ! | GAAGTCTGTGGCATTGGAAT+TGG | - | chr5_3:49789548-49789567 | Msa0815990:CDS | 45.0% |
| CATTGGGGAACGTGAACTAA+AGG | - | chr5_3:49789701-49789720 | Msa0815990:intron | 45.0% | |
| TCTATGTGGTGACACAAAGC+TGG | + | chr5_3:49790384-49790403 | None:intergenic | 45.0% | |
| ATGCCAAAGGTAGAGATAGG+TGG | - | chr5_3:49790685-49790704 | Msa0815990:intron | 45.0% | |
| ACGTTGTATGGTGTGAATGG+AGG | - | chr5_3:49790762-49790781 | Msa0815990:intron | 45.0% | |
| CGTTGTATGGTGTGAATGGA+GGG | - | chr5_3:49790763-49790782 | Msa0815990:intron | 45.0% | |
| ATGGTGTGAATGGAGGGAAA+TGG | - | chr5_3:49790769-49790788 | Msa0815990:intron | 45.0% | |
| TTGTCTGCTGCAGCTTAAGT+GGG | - | chr5_3:49791279-49791298 | Msa0815990:intron | 45.0% | |
| TAAGTGGGAAGCTTGTAAGC+TGG | - | chr5_3:49791294-49791313 | Msa0815990:intron | 45.0% | |
| TGTAAGCTGGCTAGGTCTAA+TGG | - | chr5_3:49791307-49791326 | Msa0815990:intron | 45.0% | |
| GTAAGCTGGCTAGGTCTAAT+GGG | - | chr5_3:49791308-49791327 | Msa0815990:intron | 45.0% | |
| ATTAGACCTAGCTAGCTGAC+GGG | + | chr5_3:49791395-49791414 | None:intergenic | 45.0% | |
| CATTAGACCTAGCTAGCTGA+CGG | + | chr5_3:49791396-49791415 | None:intergenic | 45.0% | |
| AGCTAGCTAGGTCTAATGCA+GGG | - | chr5_3:49791398-49791417 | Msa0815990:intron | 45.0% | |
| CATTGGGAAACGTGAACCAA+AGG | - | chr5_3:49791538-49791557 | Msa0815990:intron | 45.0% | |
| ACCTGGCTACATGAACTTGA+AGG | - | chr5_3:49791743-49791762 | Msa0815990:intron | 45.0% | |
| CCTGGCTACATGAACTTGAA+GGG | - | chr5_3:49791744-49791763 | Msa0815990:intron | 45.0% | |
| ! | TCTACAGTGGACTCCAGATT+TGG | - | chr5_3:49791987-49792006 | Msa0815990:CDS | 45.0% |
| TGCAGTAGATATACATGGGG+AGG | - | chr5_3:49792026-49792045 | Msa0815990:intron | 45.0% | |
| ! | AATGGACTCATGATGCACTG+AGG | - | chr5_3:49792109-49792128 | Msa0815990:intron | 45.0% |
| ATGGACTCATGATGCACTGA+GGG | - | chr5_3:49792110-49792129 | Msa0815990:intron | 45.0% | |
| ACCCGTACAGTCTTCTTCTT+AGG | + | chr5_3:49792250-49792269 | None:intergenic | 45.0% | |
| ! | AATACAGATGGGACTGGTAC+TGG | - | chr5_3:49792311-49792330 | Msa0815990:intron | 45.0% |
| CATCCAAAGAAGTCTGTCGA+TGG | + | chr5_3:49792372-49792391 | None:intergenic | 45.0% | |
| GTTAAGAGGTTCACAACAGC+AGG | + | chr5_3:49792451-49792470 | None:intergenic | 45.0% | |
| TACTGCGAATGCAGGTATCA+AGG | - | chr5_3:49792492-49792511 | Msa0815990:intron | 45.0% | |
| CAAAACTCAACCACTCCTTC+CGG | + | chr5_3:49792569-49792588 | None:intergenic | 45.0% | |
| GGTGTCTATAGTAGTGCATG+TGG | - | chr5_3:49792758-49792777 | Msa0815990:five_prime_UTR | 45.0% | |
| GGTGTCTATAGTAGTGCATG+TGG | - | chr5_3:49792758-49792777 | Msa0815990:five_prime_UTR | 45.0% | |
| TTTGTACATAGCAGCAGTGG+TGG | + | chr5_3:49792877-49792896 | None:intergenic | 45.0% | |
| TGCTCTGCACTTCCAAGTAG+AGG | - | chr5_3:49788837-49788856 | Msa0815990:three_prime_UTR | 50.0% | |
| GAGAGATCAGAGACGGTTAG+AGG | - | chr5_3:49788873-49788892 | Msa0815990:three_prime_UTR | 50.0% | |
| ATGGATCTGATGACTCCAGC+TGG | - | chr5_3:49789631-49789650 | Msa0815990:intron | 50.0% | |
| ! | CTCCAGCTGGAGTCAGATTT+TGG | - | chr5_3:49789644-49789663 | Msa0815990:intron | 50.0% |
| AGCCAAAATCTGACTCCAGC+TGG | + | chr5_3:49789649-49789668 | None:intergenic | 50.0% | |
| ! | ATCGGCTGGGTTGACAAAGA+AGG | + | chr5_3:49790418-49790437 | None:intergenic | 50.0% |
| GGAAGAGATAAGGATCGGCT+GGG | + | chr5_3:49790431-49790450 | None:intergenic | 50.0% | |
| TGGAAGAGATAAGGATCGGC+TGG | + | chr5_3:49790432-49790451 | None:intergenic | 50.0% | |
| CCACCACCTATCTCTACCTT+TGG | + | chr5_3:49790691-49790710 | None:intergenic | 50.0% | |
| CCAAAGGTAGAGATAGGTGG+TGG | - | chr5_3:49790688-49790707 | Msa0815990:intron | 50.0% | |
| ! | AAGGTAGAGATAGGTGGTGG+AGG | - | chr5_3:49790691-49790710 | Msa0815990:intron | 50.0% |
| CACTTAAGCTGCAGCAGACA+AGG | + | chr5_3:49791280-49791299 | None:intergenic | 50.0% | |
| CTTGTCTGCTGCAGCTTAAG+TGG | - | chr5_3:49791278-49791297 | Msa0815990:intron | 50.0% | |
| !! | GGCTAGGTCTAATGGGTTTG+AGG | - | chr5_3:49791315-49791334 | Msa0815990:intron | 50.0% |
| CAGCTAGCTAGGTCTAATGC+AGG | - | chr5_3:49791397-49791416 | Msa0815990:intron | 50.0% | |
| CTAGGTCTAATGCAGGGACT+CGG | - | chr5_3:49791404-49791423 | Msa0815990:intron | 50.0% | |
| TAGGTCTAATGCAGGGACTC+GGG | - | chr5_3:49791405-49791424 | Msa0815990:intron | 50.0% | |
| TTGTGTCTTTGGGCAGGCAT+TGG | - | chr5_3:49791514-49791533 | Msa0815990:intron | 50.0% | |
| TGTGTCTTTGGGCAGGCATT+GGG | - | chr5_3:49791515-49791534 | Msa0815990:intron | 50.0% | |
| ! | CCCTTCAAGTTCATGTAGCC+AGG | + | chr5_3:49791747-49791766 | None:intergenic | 50.0% |
| CCAGGCTCAGCAGAAGAATT+AGG | + | chr5_3:49792397-49792416 | None:intergenic | 50.0% | |
| CCTAATTCTTCTGCTGAGCC+TGG | - | chr5_3:49792394-49792413 | Msa0815990:intron | 50.0% | |
| CAGATGGTTACTGCGAATGC+AGG | - | chr5_3:49792484-49792503 | Msa0815990:intron | 50.0% | |
| AGGTGGAAAGAGTAGCTAGC+CGG | - | chr5_3:49792547-49792566 | Msa0815990:intron | 50.0% | |
| GTCTCTGCTTGAAGACGCTG+TGG | - | chr5_3:49789602-49789621 | Msa0815990:intron | 55.0% | |
| GAAGACGCTGTGGCAGACTA+TGG | - | chr5_3:49789612-49789631 | Msa0815990:intron | 55.0% | |
| ! | GGCTGGGTTGACAAAGAAGG+AGG | + | chr5_3:49790415-49790434 | None:intergenic | 55.0% |
| !! | GTAGAGATAGGTGGTGGAGG+AGG | - | chr5_3:49790694-49790713 | Msa0815990:intron | 55.0% |
| GGGAAGCTTGTAAGCTGGCT+AGG | - | chr5_3:49791299-49791318 | Msa0815990:intron | 55.0% | |
| AGGTCTAATGCAGGGACTCG+GGG | - | chr5_3:49791406-49791425 | Msa0815990:intron | 55.0% | |
| !! | TTTGGGCAGGCATTGGGCAT+TGG | - | chr5_3:49791521-49791540 | Msa0815990:intron | 55.0% |
| !! | TTGGGCAGGCATTGGGCATT+GGG | - | chr5_3:49791522-49791541 | Msa0815990:intron | 55.0% |
| TTCTGCTGTGCCTGCTGTGA+TGG | - | chr5_3:49792420-49792439 | Msa0815990:intron | 55.0% | |
| GGAAAGAGTAGCTAGCCGGA+AGG | - | chr5_3:49792551-49792570 | Msa0815990:intron | 55.0% | |
| !! | GAGATAGGTGGTGGAGGAGG+AGG | - | chr5_3:49790697-49790716 | Msa0815990:intron | 60.0% |
| !! | GCAGGCACAGCAGAAGTACC+AGG | + | chr5_3:49792415-49792434 | None:intergenic | 60.0% |
| GCAGGCACATCCATCACAGC+AGG | + | chr5_3:49792433-49792452 | None:intergenic | 60.0% | |
| GAGTAGCTAGCCGGAAGGAG+TGG | - | chr5_3:49792556-49792575 | Msa0815990:intron | 60.0% | |
| GGGAAGCCCGTCAGCTAGCT+AGG | - | chr5_3:49791386-49791405 | Msa0815990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 49788616 | 49792947 | 49788616 | ID=Msa0815990;Name=Msa0815990 |
| chr5_3 | mRNA | 49788616 | 49792947 | 49788616 | ID=Msa0815990-mRNA-1;Parent=Msa0815990;Name=Msa0815990-mRNA-1;_AED=0.27;_eAED=0.27;_QI=298|1|1|1|0.83|0.85|7|401|258 |
| chr5_3 | exon | 49788616 | 49789184 | 49788616 | ID=Msa0815990-mRNA-1:exon:15026;Parent=Msa0815990-mRNA-1 |
| chr5_3 | exon | 49789275 | 49789361 | 49789275 | ID=Msa0815990-mRNA-1:exon:15025;Parent=Msa0815990-mRNA-1 |
| chr5_3 | exon | 49789432 | 49789569 | 49789432 | ID=Msa0815990-mRNA-1:exon:15024;Parent=Msa0815990-mRNA-1 |
| chr5_3 | exon | 49790004 | 49790033 | 49790004 | ID=Msa0815990-mRNA-1:exon:15023;Parent=Msa0815990-mRNA-1 |
| chr5_3 | exon | 49790110 | 49790271 | 49790110 | ID=Msa0815990-mRNA-1:exon:15022;Parent=Msa0815990-mRNA-1 |
| chr5_3 | exon | 49791841 | 49792033 | 49791841 | ID=Msa0815990-mRNA-1:exon:15021;Parent=Msa0815990-mRNA-1 |
| chr5_3 | exon | 49792651 | 49792947 | 49792651 | ID=Msa0815990-mRNA-1:exon:15020;Parent=Msa0815990-mRNA-1 |
| chr5_3 | five_prime_UTR | 49792651 | 49792947 | 49792651 | ID=Msa0815990-mRNA-1:five_prime_utr;Parent=Msa0815990-mRNA-1 |
| chr5_3 | five_prime_UTR | 49792033 | 49792033 | 49792033 | ID=Msa0815990-mRNA-1:five_prime_utr;Parent=Msa0815990-mRNA-1 |
| chr5_3 | CDS | 49791841 | 49792032 | 49791841 | ID=Msa0815990-mRNA-1:cds;Parent=Msa0815990-mRNA-1 |
| chr5_3 | CDS | 49790110 | 49790271 | 49790110 | ID=Msa0815990-mRNA-1:cds;Parent=Msa0815990-mRNA-1 |
| chr5_3 | CDS | 49790004 | 49790033 | 49790004 | ID=Msa0815990-mRNA-1:cds;Parent=Msa0815990-mRNA-1 |
| chr5_3 | CDS | 49789432 | 49789569 | 49789432 | ID=Msa0815990-mRNA-1:cds;Parent=Msa0815990-mRNA-1 |
| chr5_3 | CDS | 49789275 | 49789361 | 49789275 | ID=Msa0815990-mRNA-1:cds;Parent=Msa0815990-mRNA-1 |
| chr5_3 | CDS | 49789017 | 49789184 | 49789017 | ID=Msa0815990-mRNA-1:cds;Parent=Msa0815990-mRNA-1 |
| chr5_3 | three_prime_UTR | 49788616 | 49789016 | 49788616 | ID=Msa0815990-mRNA-1:three_prime_utr;Parent=Msa0815990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
