AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242760 MtrunA17_Chr2g0317921 81.633 49 9 0 41 89 346 394 6.44e-19 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242760 AT5G54190.2 78.261 46 10 0 44 89 234 279 9.80e-18 77.4
Msa0242760 AT5G54190.1 78.261 46 10 0 44 89 355 400 1.40e-17 78.2
Msa0242760 AT4G27440.2 75.510 49 12 0 41 89 348 396 1.90e-17 77.8
Msa0242760 AT4G27440.1 75.510 49 12 0 41 89 348 396 1.90e-17 77.8
Msa0242760 AT1G03630.2 65.306 49 17 0 41 89 346 394 8.18e-14 67.4
Msa0242760 AT1G03630.1 65.306 49 17 0 41 89 348 396 8.21e-14 67.4

Find 40 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAAATTAAGGACCATATT+AGG 0.177201 2_2:+19169595 Msa0242760:three_prime_UTR
TTGTTGAAACCTGTTATTAA+AGG 0.196273 2_2:+19169544 Msa0242760:three_prime_UTR
ATATAGTATTATATTATTAA+AGG 0.229910 2_2:-19169623 None:intergenic
TAAAATTAAGGACCATATTA+GGG 0.285630 2_2:+19169596 Msa0242760:three_prime_UTR
GGGATTTAATCAATTAATAA+AGG 0.286639 2_2:+19169362 Msa0242760:CDS
CGCAAGGTGTGGGAGGTTAA+TGG 0.290751 2_2:+19169312 Msa0242760:CDS
GATCCAAGCGTAACAAAATA+TGG 0.310592 2_2:+19169210 Msa0242760:CDS
TCAAAATTACCTTTAATAAC+AGG 0.310735 2_2:-19169553 None:intergenic
GATCTCACCTAGGATTGTTT+TGG 0.350083 2_2:-19169701 None:intergenic
TAACAAAATATGGTGTTTAC+TGG 0.362827 2_2:+19169220 Msa0242760:CDS
AGAGGGGAGCTCTAAACTTA+TGG 0.373636 2_2:+19169425 Msa0242760:CDS
TTTGATACCAAAACAATCCT+AGG 0.412547 2_2:+19169694 Msa0242760:three_prime_UTR
ATTAAAGGAAGCCCCTAATA+TGG 0.425283 2_2:-19169608 None:intergenic
GCAAGGTGTGGGAGGTTAAT+GGG 0.431523 2_2:+19169313 Msa0242760:CDS
ATTGGAGAGGGCTGTGCAGC+CGG 0.435146 2_2:+19166614 Msa0242760:CDS
AATATGGTGTTTACTGGAGC+TGG 0.437642 2_2:+19169226 Msa0242760:CDS
TGGGTGAACCCCTAAAATTA+AGG 0.488507 2_2:+19169584 Msa0242760:three_prime_UTR
TGGAGCGGTGCGAAAATCAT+TGG 0.512589 2_2:+19166596 Msa0242760:CDS
GAACAGACATATGAGTCAAA+AGG 0.517341 2_2:-19166690 None:intergenic
AGAGGCAAGTGGTGTAGAGA+AGG 0.520951 2_2:+19169287 Msa0242760:CDS
TAGAGAAGGCTCGCAAGGTG+TGG 0.534550 2_2:+19169301 Msa0242760:CDS
CACTTGCCTCTTGAGATAGC+TGG 0.535140 2_2:-19169275 None:intergenic
AAGAAAGAGATAGAGACAGA+GGG 0.539568 2_2:+19169408 Msa0242760:CDS
GAGAGAGATCGCAGCAGCCA+CGG 0.554946 2_2:-19166659 None:intergenic
TCATATGTCTGTTCTTGACC+TGG 0.555844 2_2:+19166699 Msa0242760:CDS
TACGATCTAACTCTGAGTGC+CGG 0.557586 2_2:-19166633 None:intergenic
AAAGGTGAAAGAGAGAAGGA+TGG 0.572756 2_2:+19169380 Msa0242760:CDS
TAATAAAGGTGAAAGAGAGA+AGG 0.573535 2_2:+19169376 Msa0242760:CDS
TGGTGTAGAGAAGGCTCGCA+AGG 0.581297 2_2:+19169296 Msa0242760:CDS
AGAGAAGGCTCGCAAGGTGT+GGG 0.587119 2_2:+19169302 Msa0242760:CDS
AAAATTAAGGACCATATTAG+GGG 0.607639 2_2:+19169597 Msa0242760:three_prime_UTR
TGAGGACCAGCTATCTCAAG+AGG 0.618291 2_2:+19169269 Msa0242760:CDS
GGTGCGAAAATCATTGGAGA+GGG 0.619062 2_2:+19166602 Msa0242760:CDS
CGGTGCGAAAATCATTGGAG+AGG 0.621206 2_2:+19166601 Msa0242760:CDS
GAAGAAAGAGATAGAGACAG+AGG 0.639373 2_2:+19169407 Msa0242760:CDS
GAAGGCTCGCAAGGTGTGGG+AGG 0.649657 2_2:+19169305 Msa0242760:CDS
CAGCTATCTCAAGAGGCAAG+TGG 0.664485 2_2:+19169276 Msa0242760:CDS
TCAAAATTGAGATCTCACCT+AGG 0.694036 2_2:-19169711 None:intergenic
AGAAAGAGATAGAGACAGAG+GGG 0.706103 2_2:+19169409 Msa0242760:CDS
AGAGTTAGATCGTAAGACCG+TGG 0.724883 2_2:+19166642 Msa0242760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAGTTCATTTAT+TGG + chr2_2:19167562-19167581 Msa0242760:intron 10.0%
!! ATTAAATATAAGATTTACTA+AGG - chr2_2:19167787-19167806 None:intergenic 10.0%
!! AAATATAAATTAGTATTAAC+TGG - chr2_2:19168079-19168098 None:intergenic 10.0%
!! AACATAATACTATTTAATAA+TGG + chr2_2:19168106-19168125 Msa0242760:intron 10.0%
!! NNNNNNNNNTTGCTTTAATA+TGG - chr2_2:19168288-19168307 None:intergenic 10.0%
!!! TTTTTTTTTTCCTTTTTTTT+TGG + chr2_2:19168874-19168893 Msa0242760:intron 10.0%
!!! TTTTTGATGCTTTTTTTTAA+AGG + chr2_2:19167695-19167714 Msa0242760:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr2_2:19167909-19167928 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr2_2:19167910-19167929 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr2_2:19167974-19167993 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr2_2:19167975-19167994 None:intergenic 15.0%
!!! AAATATATTTTTTGCTATGT+GGG - chr2_2:19168229-19168248 None:intergenic 15.0%
!!! AAAATATATTTTTTGCTATG+TGG - chr2_2:19168230-19168249 None:intergenic 15.0%
!!! AAATGATTTTTTTTTGTATC+TGG + chr2_2:19169502-19169521 Msa0242760:three_prime_UTR 15.0%
!!! AATGATTTTTTTTTGTATCT+GGG + chr2_2:19169503-19169522 Msa0242760:three_prime_UTR 15.0%
!! ATTAAACACTCAAATCTTTA+TGG + chr2_2:19166872-19166891 Msa0242760:intron 20.0%
!! ATATCTAAATCATGACAAAA+TGG - chr2_2:19167197-19167216 None:intergenic 20.0%
!!! AGATTGCATTTTCATAAAAT+AGG - chr2_2:19167259-19167278 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr2_2:19167840-19167859 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+AGG - chr2_2:19167876-19167895 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr2_2:19167950-19167969 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr2_2:19167973-19167992 None:intergenic 20.0%
!! NNNNTTGCTTTAATATGGAA+GGG - chr2_2:19168283-19168302 None:intergenic 20.0%
!! NNNNNTTGCTTTAATATGGA+AGG - chr2_2:19168284-19168303 None:intergenic 20.0%
!! TGTATTCTATTAGTAAAAGT+CGG - chr2_2:19168959-19168978 None:intergenic 20.0%
!!! AGAAAAAAATAATGGAGAAT+TGG + chr2_2:19169340-19169359 Msa0242760:CDS 20.0%
!!! GAAAAAAATAATGGAGAATT+GGG + chr2_2:19169341-19169360 Msa0242760:CDS 20.0%
!!! AAAAAAATAATGGAGAATTG+GGG + chr2_2:19169342-19169361 Msa0242760:CDS 20.0%
!! GGGATTTAATCAATTAATAA+AGG + chr2_2:19169362-19169381 Msa0242760:CDS 20.0%
!!! CAACAAAAAATACTGTTTTT+TGG - chr2_2:19169530-19169549 None:intergenic 20.0%
!! TCAAAATTACCTTTAATAAC+AGG - chr2_2:19169556-19169575 None:intergenic 20.0%
!!! TTATTAAAGGTAATTTTGAG+AGG + chr2_2:19169557-19169576 Msa0242760:three_prime_UTR 20.0%
!!! TAATATGGTCCTTAATTTTA+GGG - chr2_2:19169596-19169615 None:intergenic 20.0%
!! TAAAATTAAGGACCATATTA+GGG + chr2_2:19169596-19169615 Msa0242760:three_prime_UTR 20.0%
!! TGATGATGATAATATTCAGT+TGG - chr2_2:19166998-19167017 None:intergenic 25.0%
!!! TTTATTTTTCACTGCATGAA+AGG - chr2_2:19167551-19167570 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr2_2:19167841-19167860 None:intergenic 25.0%
!!! TGAAATAGGTCAGTTATTTT+GGG - chr2_2:19167862-19167881 None:intergenic 25.0%
!! TTGAAATAGGTCAGTTATTT+TGG - chr2_2:19167863-19167882 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr2_2:19167951-19167970 None:intergenic 25.0%
! TATTATTAAGGTCCATACTA+GGG - chr2_2:19168136-19168155 None:intergenic 25.0%
! CAATTGATTAATGAAAGTGA+AGG - chr2_2:19168477-19168496 None:intergenic 25.0%
!!! TGGTTGTTTGTTTTTAATGT+AGG + chr2_2:19169179-19169198 Msa0242760:intron 25.0%
! TAACAAAATATGGTGTTTAC+TGG + chr2_2:19169220-19169239 Msa0242760:CDS 25.0%
! TGGGAAGAAGAAAAAAATAA+TGG + chr2_2:19169332-19169351 Msa0242760:CDS 25.0%
!!! TATGGATTTTTTGTGTTTAC+TGG + chr2_2:19169443-19169462 Msa0242760:CDS 25.0%
!!! ATTTTTTGTGTTTACTGGAA+GGG + chr2_2:19169448-19169467 Msa0242760:CDS 25.0%
! TTGTTGAAACCTGTTATTAA+AGG + chr2_2:19169544-19169563 Msa0242760:three_prime_UTR 25.0%
!! AATATGGTCCTTAATTTTAG+GGG - chr2_2:19169595-19169614 None:intergenic 25.0%
!! CTAATATGGTCCTTAATTTT+AGG - chr2_2:19169597-19169616 None:intergenic 25.0%
! CTAAAATTAAGGACCATATT+AGG + chr2_2:19169595-19169614 Msa0242760:three_prime_UTR 25.0%
! AAAATTAAGGACCATATTAG+GGG + chr2_2:19169597-19169616 Msa0242760:three_prime_UTR 25.0%
! TAGAACTACTCTAACCTTTT+TGG + chr2_2:19166800-19166819 Msa0242760:intron 30.0%
! AGAACTACTCTAACCTTTTT+GGG + chr2_2:19166801-19166820 Msa0242760:intron 30.0%
AAAAAAAAGCTTCCCCAAAA+AGG - chr2_2:19166817-19166836 None:intergenic 30.0%
ACACTCAAATCTTTATGGTT+TGG + chr2_2:19166877-19166896 Msa0242760:intron 30.0%
CACTCAAATCTTTATGGTTT+GGG + chr2_2:19166878-19166897 Msa0242760:intron 30.0%
ACTCAAATCTTTATGGTTTG+GGG + chr2_2:19166879-19166898 Msa0242760:intron 30.0%
GATAATATTCAGTTGGATTG+AGG - chr2_2:19166991-19167010 None:intergenic 30.0%
ACTAGCTGTTTATTCTTCAA+AGG - chr2_2:19167049-19167068 None:intergenic 30.0%
TGAAGAATAAACAGCTAGTA+CGG + chr2_2:19167050-19167069 Msa0242760:intron 30.0%
TTGCAGTGATATATGTTCTT+TGG + chr2_2:19167148-19167167 Msa0242760:intron 30.0%
TGTTGATATGCATATAAGCA+TGG + chr2_2:19167289-19167308 Msa0242760:intron 30.0%
ATGACATTCAACATCCATAT+GGG - chr2_2:19167518-19167537 None:intergenic 30.0%
TATGACATTCAACATCCATA+TGG - chr2_2:19167519-19167538 None:intergenic 30.0%
TATGATTTCATTGACCTTTG+TGG + chr2_2:19167609-19167628 Msa0242760:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr2_2:19167966-19167985 None:intergenic 30.0%
ATTATTAAGGTCCATACTAG+GGG - chr2_2:19168135-19168154 None:intergenic 30.0%
CTATTATTAAGGTCCATACT+AGG - chr2_2:19168137-19168156 None:intergenic 30.0%
AGTATGGACCTTAATAATAG+AGG + chr2_2:19168137-19168156 Msa0242760:intron 30.0%
!!! CTATTGAAGGTTATTTTGAG+AGG - chr2_2:19168175-19168194 None:intergenic 30.0%
TCAAAATAACCTTCAATAGC+AGG + chr2_2:19168176-19168195 Msa0242760:intron 30.0%
CAACCAAAAATACTGTTTCA+TGG + chr2_2:19168202-19168221 Msa0242760:intron 30.0%
!!! ATATTTTTAAAGTGCAGCAG+CGG + chr2_2:19168243-19168262 Msa0242760:intron 30.0%
CATTTCACTATGAGTAAAAG+TGG - chr2_2:19168586-19168605 None:intergenic 30.0%
GAATTTAACGAGTTTCTATG+CGG + chr2_2:19168617-19168636 Msa0242760:intron 30.0%
TGTTACTGTTATTATGCTTG+TGG + chr2_2:19168805-19168824 Msa0242760:intron 30.0%
!!! TCCTTTTTTTTTGGTTGTCA+CGG + chr2_2:19168883-19168902 Msa0242760:intron 30.0%
GGAAGATCATAATTTCACTT+AGG + chr2_2:19168931-19168950 Msa0242760:intron 30.0%
GTAAATAACATTGACACTCA+TGG + chr2_2:19169102-19169121 Msa0242760:intron 30.0%
! GTGAAAAGTGCATAAATCAT+TGG + chr2_2:19169134-19169153 Msa0242760:intron 30.0%
GTATCTTCATTTCTCATGTA+TGG + chr2_2:19169159-19169178 Msa0242760:intron 30.0%
! TAAAGCTTTTGCTTCATTTG+AGG + chr2_2:19169251-19169270 Msa0242760:CDS 30.0%
TAATAAAGGTGAAAGAGAGA+AGG + chr2_2:19169376-19169395 Msa0242760:CDS 30.0%
!!! GATTTTTTGTGTTTACTGGA+AGG + chr2_2:19169447-19169466 Msa0242760:CDS 30.0%
TTTGATACCAAAACAATCCT+AGG + chr2_2:19169694-19169713 Msa0242760:three_prime_UTR 30.0%
GAACAGACATATGAGTCAAA+AGG - chr2_2:19166693-19166712 None:intergenic 35.0%
! GAACTACTCTAACCTTTTTG+GGG + chr2_2:19166802-19166821 Msa0242760:intron 35.0%
! CTCAAATCTTTATGGTTTGG+GGG + chr2_2:19166880-19166899 Msa0242760:intron 35.0%
ACGGCTGAAAATCTTTGAAT+TGG + chr2_2:19166906-19166925 Msa0242760:intron 35.0%
GAACATATATCACTGCAACA+TGG - chr2_2:19167146-19167165 None:intergenic 35.0%
AAACAGACATATGGGTCAAA+AGG - chr2_2:19167464-19167483 None:intergenic 35.0%
CAGGTCAAAAACAGACATAT+GGG - chr2_2:19167472-19167491 None:intergenic 35.0%
GAAAATTTCGTTGACCCATA+TGG + chr2_2:19167501-19167520 Msa0242760:intron 35.0%
! CAACTTTTCAACATCCACAA+AGG - chr2_2:19167626-19167645 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr2_2:19167827-19167846 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr2_2:19167996-19168015 Msa0242760:intron 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr2_2:19168009-19168028 Msa0242760:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr2_2:19168010-19168029 Msa0242760:intron 35.0%
! AATAATGGAAACCCCTAGTA+TGG + chr2_2:19168121-19168140 Msa0242760:intron 35.0%
!!! GGTTATTTTGAGAGGATCAT+GGG - chr2_2:19168167-19168186 None:intergenic 35.0%
!!! AGGTTATTTTGAGAGGATCA+TGG - chr2_2:19168168-19168187 None:intergenic 35.0%
! GGACCATGAAACAGTATTTT+TGG - chr2_2:19168208-19168227 None:intergenic 35.0%
GGATGAAGAGAGAGAAAAAA+AGG - chr2_2:19168427-19168446 None:intergenic 35.0%
TAGAAGAACAAATCTGGTCT+GGG - chr2_2:19168449-19168468 None:intergenic 35.0%
ATAGAAGAACAAATCTGGTC+TGG - chr2_2:19168450-19168469 None:intergenic 35.0%
GAGTGATAGAAGAACAAATC+TGG - chr2_2:19168455-19168474 None:intergenic 35.0%
ATATGGACCTTAAGTTAACG+AGG + chr2_2:19168545-19168564 Msa0242760:intron 35.0%
ATATCCTCCTCGTTAACTTA+AGG - chr2_2:19168555-19168574 None:intergenic 35.0%
TTCTTCAACTCACATCACAA+TGG + chr2_2:19168665-19168684 Msa0242760:intron 35.0%
ACCGTGACAACCAAAAAAAA+AGG - chr2_2:19168887-19168906 None:intergenic 35.0%
AGTCAAGTTCTTATCCAAAC+AGG + chr2_2:19169078-19169097 Msa0242760:intron 35.0%
GTCAAGTTCTTATCCAAACA+GGG + chr2_2:19169079-19169098 Msa0242760:intron 35.0%
TCAAGTTCTTATCCAAACAG+GGG + chr2_2:19169080-19169099 Msa0242760:intron 35.0%
! CAATGTTATTTACCCCTGTT+TGG - chr2_2:19169095-19169114 None:intergenic 35.0%
GATCCAAGCGTAACAAAATA+TGG + chr2_2:19169210-19169229 Msa0242760:CDS 35.0%
! ACACCATATTTTGTTACGCT+TGG - chr2_2:19169216-19169235 None:intergenic 35.0%
AAGAAAGAGATAGAGACAGA+GGG + chr2_2:19169408-19169427 Msa0242760:CDS 35.0%
ATTAAAGGAAGCCCCTAATA+TGG - chr2_2:19169611-19169630 None:intergenic 35.0%
TCATATGTCTGTTCTTGACC+TGG + chr2_2:19166699-19166718 Msa0242760:CDS 40.0%
! TGTCGACAAAATTTTCACCG+CGG - chr2_2:19166745-19166764 None:intergenic 40.0%
! CTTTATGGTTTGGGGGATTA+CGG + chr2_2:19166887-19166906 Msa0242760:intron 40.0%
CGGCAAAGACTGATATCAAA+TGG + chr2_2:19167070-19167089 Msa0242760:intron 40.0%
CCAGGTCAAAAACAGACATA+TGG - chr2_2:19167473-19167492 None:intergenic 40.0%
!!! CCATATGTCTGTTTTTGACC+TGG + chr2_2:19167470-19167489 Msa0242760:intron 40.0%
! CGAAATTTTCACAGCAAACC+AGG - chr2_2:19167491-19167510 None:intergenic 40.0%
TGTTGAAAAGTTGCGCAATG+AGG + chr2_2:19167633-19167652 Msa0242760:intron 40.0%
GTTGAAAAGTTGCGCAATGA+GGG + chr2_2:19167634-19167653 Msa0242760:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr2_2:19167826-19167845 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG - chr2_2:19168012-19168031 None:intergenic 40.0%
TGGGTGGACCTCTATTATTA+AGG - chr2_2:19168148-19168167 None:intergenic 40.0%
!! TATTTTGAGAGGATCATGGG+TGG - chr2_2:19168164-19168183 None:intergenic 40.0%
AGAAGAACAAATCTGGTCTG+GGG - chr2_2:19168448-19168467 None:intergenic 40.0%
AGCAGCTGTGTATCGTTAAA+TGG - chr2_2:19168510-19168529 None:intergenic 40.0%
GTAACATTCTTCGTGTAGCT+CGG - chr2_2:19168724-19168743 None:intergenic 40.0%
TCACGGTTTGTACATCTTGT+GGG + chr2_2:19168900-19168919 Msa0242760:intron 40.0%
AATATGGTGTTTACTGGAGC+TGG + chr2_2:19169226-19169245 Msa0242760:CDS 40.0%
AAAGGTGAAAGAGAGAAGGA+TGG + chr2_2:19169380-19169399 Msa0242760:CDS 40.0%
GAAGAAAGAGATAGAGACAG+AGG + chr2_2:19169407-19169426 Msa0242760:CDS 40.0%
AGAAAGAGATAGAGACAGAG+GGG + chr2_2:19169409-19169428 Msa0242760:CDS 40.0%
!! AGGTAATTTTGAGAGGACCA+TGG + chr2_2:19169564-19169583 Msa0242760:three_prime_UTR 40.0%
!! GGTAATTTTGAGAGGACCAT+GGG + chr2_2:19169565-19169584 Msa0242760:three_prime_UTR 40.0%
!! TAATTTTAGGGGTTCACCCA+TGG - chr2_2:19169584-19169603 None:intergenic 40.0%
TGGGTGAACCCCTAAAATTA+AGG + chr2_2:19169584-19169603 Msa0242760:three_prime_UTR 40.0%
! GATCTCACCTAGGATTGTTT+TGG - chr2_2:19169704-19169723 None:intergenic 40.0%
GGTGCGAAAATCATTGGAGA+GGG + chr2_2:19166602-19166621 Msa0242760:CDS 45.0%
TACGATCTAACTCTGAGTGC+CGG - chr2_2:19166636-19166655 None:intergenic 45.0%
AGAGTTAGATCGTAAGACCG+TGG + chr2_2:19166642-19166661 Msa0242760:CDS 45.0%
! ATTTTTGCACCGCTATGGCA+TGG - chr2_2:19167375-19167394 None:intergenic 45.0%
! CAACGATTTTTGCACCGCTA+TGG - chr2_2:19167380-19167399 None:intergenic 45.0%
CATAGCGGTGCAAAAATCGT+TGG + chr2_2:19167378-19167397 Msa0242760:intron 45.0%
GGTGCAAAAATCGTTGGAGA+GGG + chr2_2:19167384-19167403 Msa0242760:intron 45.0%
ATATATTACTCCCTCCGTCC+CGG + chr2_2:19167805-19167824 Msa0242760:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr2_2:19168014-19168033 Msa0242760:intron 45.0%
TGGTTGCAACCTGCTATTGA+AGG - chr2_2:19168188-19168207 None:intergenic 45.0%
TGGACCTTAAGTTAACGAGG+AGG + chr2_2:19168548-19168567 Msa0242760:intron 45.0%
GTCACGGTTTGTACATCTTG+TGG + chr2_2:19168899-19168918 Msa0242760:intron 45.0%
GGTTTGTACATCTTGTGGGA+AGG + chr2_2:19168904-19168923 Msa0242760:intron 45.0%
! TACATCTTGTGGGAAGGTGT+TGG + chr2_2:19168910-19168929 Msa0242760:intron 45.0%
AAGCCTTACTCCCATTGAGT+AGG + chr2_2:19168996-19169015 Msa0242760:intron 45.0%
AGCCTTACTCCCATTGAGTA+GGG + chr2_2:19168997-19169016 Msa0242760:intron 45.0%
CAGAACAGACCCTACTCAAT+GGG - chr2_2:19169009-19169028 None:intergenic 45.0%
!! AGAGGGGAGCTCTAAACTTA+TGG + chr2_2:19169425-19169444 Msa0242760:CDS 45.0%
!! ATATAGTATTATATTATTAA+AGG - chr2_2:19169626-19169645 None:intergenic 5.0%
TGGAGCGGTGCGAAAATCAT+TGG + chr2_2:19166596-19166615 Msa0242760:CDS 50.0%
CGGTGCGAAAATCATTGGAG+AGG + chr2_2:19166601-19166620 Msa0242760:CDS 50.0%
CAAAGTCAAGAACACGGACC+AGG - chr2_2:19166720-19166739 None:intergenic 50.0%
CTGGTCCGTGTTCTTGACTT+TGG + chr2_2:19166718-19166737 Msa0242760:intron 50.0%
GCGGACCAAAGTCAAGAACA+CGG - chr2_2:19166726-19166745 None:intergenic 50.0%
GTGTTCTTGACTTTGGTCCG+CGG + chr2_2:19166725-19166744 Msa0242760:intron 50.0%
CTCCTTCAACCATGCCATAG+CGG + chr2_2:19167363-19167382 Msa0242760:intron 50.0%
CGGTGCAAAAATCGTTGGAG+AGG + chr2_2:19167383-19167402 Msa0242760:intron 50.0%
GCAAAAATCGTTGGAGAGGG+CGG + chr2_2:19167387-19167406 Msa0242760:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr2_2:19167822-19167841 None:intergenic 50.0%
! ATGAAGTACTACCTCCGTCC+CGG - chr2_2:19168031-19168050 None:intergenic 50.0%
! CTGTCACGCAGAGGAGTATA+TGG + chr2_2:19168528-19168547 Msa0242760:intron 50.0%
GACCCTACTCAATGGGAGTA+AGG - chr2_2:19169002-19169021 None:intergenic 50.0%
CCAGAACAGACCCTACTCAA+TGG - chr2_2:19169010-19169029 None:intergenic 50.0%
CCATTGAGTAGGGTCTGTTC+TGG + chr2_2:19169007-19169026 Msa0242760:intron 50.0%
TGAGGACCAGCTATCTCAAG+AGG + chr2_2:19169269-19169288 Msa0242760:CDS 50.0%
CACTTGCCTCTTGAGATAGC+TGG - chr2_2:19169278-19169297 None:intergenic 50.0%
CAGCTATCTCAAGAGGCAAG+TGG + chr2_2:19169276-19169295 Msa0242760:CDS 50.0%
AGAGGCAAGTGGTGTAGAGA+AGG + chr2_2:19169287-19169306 Msa0242760:CDS 50.0%
GCAAGGTGTGGGAGGTTAAT+GGG + chr2_2:19169313-19169332 Msa0242760:CDS 50.0%
GCTGCGATCTCTCTCTCTCT+CGG + chr2_2:19166667-19166686 Msa0242760:CDS 55.0%
CACCGCTATGGCATGGTTGA+AGG - chr2_2:19167368-19167387 None:intergenic 55.0%
TGCAGCGATCTATCTCGCAC+TGG + chr2_2:19167431-19167450 Msa0242760:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr2_2:19167818-19167837 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG + chr2_2:19168017-19168036 Msa0242760:intron 55.0%
TGGTGTAGAGAAGGCTCGCA+AGG + chr2_2:19169296-19169315 Msa0242760:CDS 55.0%
TAGAGAAGGCTCGCAAGGTG+TGG + chr2_2:19169301-19169320 Msa0242760:CDS 55.0%
AGAGAAGGCTCGCAAGGTGT+GGG + chr2_2:19169302-19169321 Msa0242760:CDS 55.0%
CGCAAGGTGTGGGAGGTTAA+TGG + chr2_2:19169312-19169331 Msa0242760:CDS 55.0%
ATTGGAGAGGGCTGTGCAGC+CGG + chr2_2:19166614-19166633 Msa0242760:CDS 60.0%
GAGAGAGATCGCAGCAGCCA+CGG - chr2_2:19166662-19166681 None:intergenic 60.0%
AAATCGTTGGAGAGGGCGGC+AGG + chr2_2:19167391-19167410 Msa0242760:intron 60.0%
AATCGTTGGAGAGGGCGGCA+GGG + chr2_2:19167392-19167411 Msa0242760:intron 60.0%
! CGCTGCACCGACAGTCTTAC+CGG - chr2_2:19167418-19167437 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr2_2:19167819-19167838 None:intergenic 60.0%
ACACAGCTGCTGTCACGCAG+AGG + chr2_2:19168519-19168538 Msa0242760:intron 60.0%
GGCAGGGCCGGTAAGACTGT+CGG + chr2_2:19167408-19167427 Msa0242760:intron 65.0%
GAAGGCTCGCAAGGTGTGGG+AGG + chr2_2:19169305-19169324 Msa0242760:CDS 65.0%
GTTGGAGAGGGCGGCAGGGC+CGG + chr2_2:19167396-19167415 Msa0242760:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 19166592 19169727 19166592 ID=Msa0242760;Name=Msa0242760
chr2_2 mRNA 19166592 19169727 19166592 ID=Msa0242760-mRNA-1;Parent=Msa0242760;Name=Msa0242760-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0.5|0.5|1|1|2|236|139
chr2_2 exon 19166592 19166720 19166592 ID=Msa0242760-mRNA-1:exon:7775;Parent=Msa0242760-mRNA-1
chr2_2 exon 19169201 19169727 19169201 ID=Msa0242760-mRNA-1:exon:7776;Parent=Msa0242760-mRNA-1
chr2_2 CDS 19166592 19166720 19166592 ID=Msa0242760-mRNA-1:cds;Parent=Msa0242760-mRNA-1
chr2_2 CDS 19169201 19169491 19169201 ID=Msa0242760-mRNA-1:cds;Parent=Msa0242760-mRNA-1
chr2_2 three_prime_UTR 19169492 19169727 19169492 ID=Msa0242760-mRNA-1:three_prime_utr;Parent=Msa0242760-mRNA-1
Gene Sequence

>Msa0242760

ATGCTGGAGCGGTGCGAAAATCATTGGAGAGGGCTGTGCAGCCGGCACTCAGAGTTAGATCGTAAGACCGTGGCTGCTGCGATCTCTCTCTCTCTCGGCCTTTTGACTCATATGTCTGTTCTTGACCTGGTTGTAAGTGATCCAAGCGTAACAAAATATGGTGTTTACTGGAGCTGGAATAAAGCTTTTGCTTCATTTGAGGACCAGCTATCTCAAGAGGCAAGTGGTGTAGAGAAGGCTCGCAAGGTGTGGGAGGTTAATGGGAAGAAGAAAAAAATAATGGAGAATTGGGGATTTAATCAATTAATAAAGGTGAAAGAGAGAAGGATGGCGATGAAGAAAGAGATAGAGACAGAGGGGAGCTCTAAACTTATGGATTTTTTGTGTTTACTGGAAGGGCACAAGAGTAATATCAGTTGA
Protein sequence

>Msa0242760

MLERCENHWRGLCSRHSELDRKTVAAAISLSLGLLTHMSVLDLVVSDPSVTKYGVYWSWNKAFASFEDQLSQEASGVEKARKVWEVNGKKKKIMENWGFNQLIKVKERRMAMKKEIETEGSSKLMDFLCLLEGHKSNIS*