AlfalfaGEDB | Msa0780350

M. sativa cultivar zhongmu-4 / Msa0780350

KEGG: -
GO: -
PFAM: PF13947.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0780350	sp\|Q9SKK8\|ATL22_ARATH	28.807	243	136	10	31	242	42	278	4.07e-15	77.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0780350	G7JXF0	91.903	247	13	3	2	244	1	244	3.86e-145	415

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001380	Msa0780350	0.811780	5.900562e-51	-8.615850e-47
Msa0078830	Msa0780350	0.805143	1.538887e-49	-8.615850e-47
Msa0091930	Msa0780350	0.978641	2.973633e-146	-8.615850e-47
Msa0092910	Msa0780350	0.821910	3.140746e-53	-8.615850e-47
Msa0650520	Msa0780350	0.856925	2.313589e-62	-8.615850e-47
Msa0661720	Msa0780350	0.800670	1.292549e-48	-8.615850e-47
Msa0662580	Msa0780350	0.832667	8.294872e-56	-8.615850e-47
Msa0692540	Msa0780350	0.856413	3.270956e-62	-8.615850e-47
Msa0708290	Msa0780350	0.841689	4.080710e-58	-8.615850e-47
Msa0708300	Msa0780350	0.834503	2.886193e-56	-8.615850e-47
Msa0708310	Msa0780350	0.819389	1.191467e-52	-8.615850e-47
Msa0780350	Msa0780450	0.886100	4.587781e-72	-8.615850e-47
Msa0780350	Msa0788660	0.807610	4.648199e-50	-8.615850e-47
Msa0780350	Msa0834030	0.980739	6.413744e-151	-8.615850e-47
Msa0780350	Msa0936530	0.806317	8.724684e-50	-8.615850e-47
Msa0780350	Msa0936550	0.818619	1.782992e-52	-8.615850e-47
Msa0780350	Msa0964490	0.830013	3.729634e-55	-8.615850e-47
Msa0780350	Msa0973520	0.811413	7.087397e-51	-8.615850e-47
Msa0780350	Msa0973530	0.822284	2.571693e-53	-8.615850e-47
Msa0780350	Msa0992640	0.800705	1.271663e-48	-8.615850e-47
Msa0780350	Msa0992680	0.801861	7.372177e-49	-8.615850e-47
Msa0780350	Msa1017160	0.810468	1.135711e-50	-8.615850e-47
Msa0780350	Msa1130390	0.813192	2.898144e-51	-8.615850e-47
Msa0780350	Msa1201200	0.805030	1.624770e-49	-8.615850e-47
Msa0780350	Msa1353870	0.846121	2.649403e-59	-8.615850e-47
Msa0780350	Msa1353880	0.815130	1.082482e-51	-8.615850e-47
Msa0780350	Msa1353890	0.818315	2.090076e-52	-8.615850e-47
Msa0780350	Msa1398900	0.807620	4.625249e-50	-8.615850e-47
Msa0780350	Msa1428070	0.802120	6.523104e-49	-8.615850e-47
Msa0780350	Msa1435210	0.849143	3.907484e-60	-8.615850e-47
Msa0780350	Msa1458510	0.809545	1.794310e-50	-8.615850e-47
Msa0235720	Msa0780350	0.806334	8.653285e-50	-8.615850e-47
Msa0377800	Msa0780350	0.833172	6.211773e-56	-8.615850e-47
Msa0419670	Msa0780350	0.803308	3.709643e-49	-8.615850e-47
Msa0426600	Msa0780350	0.817200	3.731325e-52	-8.615850e-47
Msa0431440	Msa0780350	0.828290	9.762889e-55	-8.615850e-47
Msa0443020	Msa0780350	0.806112	9.636833e-50	-8.615850e-47
Msa0466010	Msa0780350	0.831587	1.533961e-55	-8.615850e-47
Msa0472910	Msa0780350	0.822486	2.308274e-53	-8.615850e-47
Msa0476330	Msa0780350	0.829298	5.566432e-55	-8.615850e-47
Msa0348550	Msa0780350	0.848654	5.342079e-60	-8.615850e-47
Msa0484160	Msa0780350	0.803614	3.204628e-49	-8.615850e-47
Msa0490380	Msa0780350	0.847253	1.299875e-59	-8.615850e-47
Msa0517570	Msa0780350	0.823214	1.562673e-53	-8.615850e-47
Msa0520330	Msa0780350	0.838404	2.934026e-57	-8.615850e-47
Msa0524440	Msa0780350	0.811731	6.044963e-51	-8.615850e-47
Msa0574570	Msa0780350	0.827462	1.543939e-54	-8.615850e-47
Msa0574600	Msa0780350	0.802813	4.693975e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0780350	MtrunA17_Chr5g0399521	91.903	247	13	3	2	244	1	244	7.44e-149	415
Msa0780350	MtrunA17_Chr3g0126611	32.086	187	109	9	28	205	43	220	2.91e-15	74.3
Msa0780350	MtrunA17_Chr8g0347101	31.098	164	98	6	30	185	33	189	6.73e-15	73.2
Msa0780350	MtrunA17_Chr4g0037001	32.593	135	77	4	1	124	8	139	1.42e-12	67.0
Msa0780350	MtrunA17_Chr1g0158771	26.667	225	148	7	22	235	37	255	3.82e-12	65.5
Msa0780350	MtrunA17_Chr8g0388231	26.009	223	131	10	2	199	1	214	8.30e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0780350	AT5G53110.1	35.057	174	94	7	27	186	39	207	4.04e-17	80.1
Msa0780350	AT2G25410.1	28.807	243	136	10	31	242	42	278	4.14e-16	77.0
Msa0780350	AT2G46495.2	28.655	171	102	8	29	185	35	199	3.34e-13	68.6
Msa0780350	AT2G46495.1	28.655	171	102	8	29	185	35	199	3.68e-13	68.6
Msa0780350	AT5G36001.2	29.560	159	94	8	29	185	41	183	1.14e-11	62.8
Msa0780350	AT5G36001.1	29.560	159	94	8	29	185	41	183	3.96e-11	62.4

Find 58 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCTTTCTCACCCTCTTCT+TGG	0.138462	5_2:+62067812	Msa0780350:CDS
TATGATGATACCACTCTTTC+TGG	0.178660	5_2:+62067933	Msa0780350:CDS
AAGTTCTTCATTATCAAATT+TGG	0.203769	5_2:+62069060	Msa0780350:three_prime_UTR
TCACTATCCATTTCACATAA+AGG	0.295402	5_2:+62067887	Msa0780350:CDS
CAAGTAGACTTTGTGAAGTT+TGG	0.298271	5_2:-62067614	None:intergenic
CTTTGCATAAAGAATTAAAA+AGG	0.312037	5_2:-62067675	None:intergenic
TGTCACACAAAGAAAATATA+TGG	0.321871	5_2:-62069269	None:intergenic
AGACTGTTGTCTGAAATATA+AGG	0.324770	5_2:-62068308	None:intergenic
CACTATCCATTTCACATAAA+GGG	0.339521	5_2:+62067888	Msa0780350:CDS
GAACTAGGCATAGGAACTTC+AGG	0.345941	5_2:-62068242	None:intergenic
CATAGCGTGGCAGATTTCTA+AGG	0.365268	5_2:+62068994	Msa0780350:CDS
AAGAAGAGTGAATTCATCAT+TGG	0.384353	5_2:-62067795	None:intergenic
AACGCTTCAAGCGATGTTAG+AGG	0.407833	5_2:+62069139	Msa0780350:three_prime_UTR
GTTAACTGCAACGGTATTGC+TGG	0.410536	5_2:+62067855	Msa0780350:CDS
TAAAATACGAACACTATTTG+AGG	0.411041	5_2:+62069335	Msa0780350:three_prime_UTR
TGTTGACCCTTTATGTGAAA+TGG	0.413795	5_2:-62067894	None:intergenic
GTCACGACTACATCAATCTA+AGG	0.414143	5_2:+62069303	Msa0780350:three_prime_UTR
CGTTGCAGTTAACAGAGGTT+TGG	0.417106	5_2:-62067845	None:intergenic
GGCAACACTTGTAGGCATAA+AGG	0.435949	5_2:+62068936	Msa0780350:CDS
AGGACTTCTTGGTTTCTTGT+TGG	0.440422	5_2:-62067655	None:intergenic
GACTGTTGTCTGAAATATAA+GGG	0.447474	5_2:-62068307	None:intergenic
TATATTTCAGACAACAGTCT+TGG	0.476999	5_2:+62068311	Msa0780350:CDS
GCATAAAGGTTCATTTATCA+AGG	0.478351	5_2:+62068950	Msa0780350:CDS
GTAGACTTTGTGAAGTTTGG+TGG	0.479187	5_2:-62067611	None:intergenic
GTGGCACTGGCAACACTTGT+AGG	0.486667	5_2:+62068928	Msa0780350:CDS
AGAAGAGTGAATTCATCATT+GGG	0.494871	5_2:-62067794	None:intergenic
ACTATCAAATCACCATATGA+TGG	0.503242	5_2:-62067999	None:intergenic
TGAAATGGATAGTGAATGTC+AGG	0.523321	5_2:-62067879	None:intergenic
AATCTGAAGAAAGCAAAGAA+TGG	0.524107	5_2:+62068360	Msa0780350:CDS
AGTGAATTCATCATTGGGAA+TGG	0.525024	5_2:-62067789	None:intergenic
AACTAGGCATAGGAACTTCA+GGG	0.534743	5_2:-62068241	None:intergenic
CATTTATCAAGGAGGAAAGA+AGG	0.537861	5_2:+62068961	Msa0780350:CDS
CAAAATGACCAATTCTGTAA+AGG	0.539785	5_2:-62067588	None:intergenic
TCTCACACAGCACGCAATAC+AGG	0.540563	5_2:+62068398	Msa0780350:CDS
ACGGTGTAAAGGTGAGGTTA+AGG	0.543625	5_2:-62068097	None:intergenic
ATAGTATTGGAACGGTGTAA+AGG	0.555489	5_2:-62068108	None:intergenic
ACCATATGATGGAAAATGAA+TGG	0.555827	5_2:-62067988	None:intergenic
GATTTCTAAGGACATAGTAA+AGG	0.589533	5_2:+62069006	Msa0780350:exon
ATATAAGGGCTATATTTGAA+AGG	0.590983	5_2:-62068293	None:intergenic
GAAGATGAAAACCAAGAAGA+GGG	0.591458	5_2:-62067823	None:intergenic
AGGACAATTGTTGCATAGCG+TGG	0.602254	5_2:+62068981	Msa0780350:CDS
AAGCTCAAAACCAGAAAGAG+TGG	0.602365	5_2:-62067943	None:intergenic
CAAAGTACATATATTCTAGA+CGG	0.605467	5_2:+62067693	Msa0780350:five_prime_UTR
AGAACGTAATAGTATTGGAA+CGG	0.607440	5_2:-62068116	None:intergenic
GGAAGATGAAAACCAAGAAG+AGG	0.611027	5_2:-62067824	None:intergenic
CAAACCTCTGTTAACTGCAA+CGG	0.615436	5_2:+62067846	Msa0780350:CDS
TAACATCGCTTGAAGCGTTG+AGG	0.622468	5_2:-62069135	None:intergenic
ATATTTGAAAGGAATAGCAA+TGG	0.622554	5_2:-62068282	None:intergenic
GGAATGGAGAAGATGTTATG+AGG	0.622795	5_2:-62067773	None:intergenic
TAACTTGAATCACTTAAACA+TGG	0.633744	5_2:-62068200	None:intergenic
GTCTTGGTCTTAGATTAACA+TGG	0.638466	5_2:+62068327	Msa0780350:CDS
AAAGTCTTGTGGAGCAATTG+AGG	0.638737	5_2:-62068154	None:intergenic
TAAAGGTTCATTTATCAAGG+AGG	0.641975	5_2:+62068953	Msa0780350:CDS
ATTGGAACGGTGTAAAGGTG+AGG	0.642041	5_2:-62068103	None:intergenic
TCTTGGTCTTAGATTAACAT+GGG	0.645510	5_2:+62068328	Msa0780350:CDS
AATACCGTTGCAGTTAACAG+AGG	0.663218	5_2:-62067850	None:intergenic
TAAGGTTGAGAAAGACTCTG+TGG	0.692883	5_2:-62068079	None:intergenic
ATATGATGGAAAATGAATGG+TGG	0.729816	5_2:-62067985	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTACAAAAATAAAGTTCA+TGG	+	chr5_2:62068446-62068465	Msa0780350:intron	15.0%
!!	ATTACAAAAATAAAGTTCAT+GGG	+	chr5_2:62068447-62068466	Msa0780350:intron	15.0%
!!	TGTATAGTACATATATATAT+TGG	+	chr5_2:62068582-62068601	Msa0780350:intron	15.0%
!!	GTATAGTACATATATATATT+GGG	+	chr5_2:62068583-62068602	Msa0780350:intron	15.0%
!!	AATTACAAAAATAAAGTTCA+TGG	+	chr5_2:62068446-62068465	Msa0780350:intron	15.0%
!!	ATTACAAAAATAAAGTTCAT+GGG	+	chr5_2:62068447-62068466	Msa0780350:intron	15.0%
!!	TGTATAGTACATATATATAT+TGG	+	chr5_2:62068582-62068601	Msa0780350:intron	15.0%
!!	GTATAGTACATATATATATT+GGG	+	chr5_2:62068583-62068602	Msa0780350:intron	15.0%
!!	CTTTGCATAAAGAATTAAAA+AGG	-	chr5_2:62067678-62067697	None:intergenic	20.0%
!!!	TTTTACTTCTTATTCATTCT+TGG	+	chr5_2:62067726-62067745	Msa0780350:five_prime_UTR	20.0%
!!!	TTTTAAGAACGTAATAGTAT+TGG	-	chr5_2:62068124-62068143	None:intergenic	20.0%
!!	TTTGTAATTAAAGAAAGAGA+TGG	-	chr5_2:62068435-62068454	None:intergenic	20.0%
!!	AGAAAATTATTAACAAAGCT+TGG	+	chr5_2:62068810-62068829	Msa0780350:intron	20.0%
!!	AAGTTCTTCATTATCAAATT+TGG	+	chr5_2:62069060-62069079	Msa0780350:three_prime_UTR	20.0%
!!!	TTTTGTATAGTATATGTTGT+AGG	+	chr5_2:62069094-62069113	Msa0780350:three_prime_UTR	20.0%
!!	CTTTGCATAAAGAATTAAAA+AGG	-	chr5_2:62067678-62067697	None:intergenic	20.0%
!!!	TTTTACTTCTTATTCATTCT+TGG	+	chr5_2:62067726-62067745	Msa0780350:five_prime_UTR	20.0%
!!!	TTTTAAGAACGTAATAGTAT+TGG	-	chr5_2:62068124-62068143	None:intergenic	20.0%
!!	TTTGTAATTAAAGAAAGAGA+TGG	-	chr5_2:62068435-62068454	None:intergenic	20.0%
!!	AGAAAATTATTAACAAAGCT+TGG	+	chr5_2:62068810-62068829	Msa0780350:intron	20.0%
!!	AAGTTCTTCATTATCAAATT+TGG	+	chr5_2:62069060-62069079	Msa0780350:three_prime_UTR	20.0%
!!!	TTTTGTATAGTATATGTTGT+AGG	+	chr5_2:62069094-62069113	Msa0780350:three_prime_UTR	20.0%
!	AAGAATTAAAAAGGACTTCT+TGG	-	chr5_2:62067669-62067688	None:intergenic	25.0%
!	CAAAGTACATATATTCTAGA+CGG	+	chr5_2:62067693-62067712	Msa0780350:five_prime_UTR	25.0%
!!	ATCAAGAAGATCAATCTTTT+TGG	-	chr5_2:62068045-62068064	None:intergenic	25.0%
!	TAACTTGAATCACTTAAACA+TGG	-	chr5_2:62068203-62068222	None:intergenic	25.0%
!!!	TTGACTTTTTTACATGAACT+AGG	-	chr5_2:62068260-62068279	None:intergenic	25.0%
!	ATATTTGAAAGGAATAGCAA+TGG	-	chr5_2:62068285-62068304	None:intergenic	25.0%
!	ATATAAGGGCTATATTTGAA+AGG	-	chr5_2:62068296-62068315	None:intergenic	25.0%
!	AGGAAATTATGCTCATTTAA+AGG	-	chr5_2:62068491-62068510	None:intergenic	25.0%
!	ATAATTTCCTTATACTAGGT+TGG	+	chr5_2:62068501-62068520	Msa0780350:intron	25.0%
!	TAATTTCCTTATACTAGGTT+GGG	+	chr5_2:62068502-62068521	Msa0780350:intron	25.0%
!	AGTACATATATATATTGGGA+AGG	+	chr5_2:62068587-62068606	Msa0780350:intron	25.0%
!	ATCATTACGAAGTATATACT+AGG	+	chr5_2:62068641-62068660	Msa0780350:intron	25.0%
!	TGTCACACAAAGAAAATATA+TGG	-	chr5_2:62069272-62069291	None:intergenic	25.0%
!	TAAAATACGAACACTATTTG+AGG	+	chr5_2:62069335-62069354	Msa0780350:three_prime_UTR	25.0%
!	AAGAATTAAAAAGGACTTCT+TGG	-	chr5_2:62067669-62067688	None:intergenic	25.0%
!	CAAAGTACATATATTCTAGA+CGG	+	chr5_2:62067693-62067712	Msa0780350:five_prime_UTR	25.0%
!!	ATCAAGAAGATCAATCTTTT+TGG	-	chr5_2:62068045-62068064	None:intergenic	25.0%
!	TAACTTGAATCACTTAAACA+TGG	-	chr5_2:62068203-62068222	None:intergenic	25.0%
!!!	TTGACTTTTTTACATGAACT+AGG	-	chr5_2:62068260-62068279	None:intergenic	25.0%
!	ATATTTGAAAGGAATAGCAA+TGG	-	chr5_2:62068285-62068304	None:intergenic	25.0%
!	ATATAAGGGCTATATTTGAA+AGG	-	chr5_2:62068296-62068315	None:intergenic	25.0%
!	AGGAAATTATGCTCATTTAA+AGG	-	chr5_2:62068491-62068510	None:intergenic	25.0%
!	ATAATTTCCTTATACTAGGT+TGG	+	chr5_2:62068501-62068520	Msa0780350:intron	25.0%
!	TAATTTCCTTATACTAGGTT+GGG	+	chr5_2:62068502-62068521	Msa0780350:intron	25.0%
!	AGTACATATATATATTGGGA+AGG	+	chr5_2:62068587-62068606	Msa0780350:intron	25.0%
!	ATCATTACGAAGTATATACT+AGG	+	chr5_2:62068641-62068660	Msa0780350:intron	25.0%
!	TGTCACACAAAGAAAATATA+TGG	-	chr5_2:62069272-62069291	None:intergenic	25.0%
!	TAAAATACGAACACTATTTG+AGG	+	chr5_2:62069335-62069354	Msa0780350:three_prime_UTR	25.0%
!	TTTTTGCTCCTTTACAGAAT+TGG	+	chr5_2:62067580-62067599	Msa0780350:five_prime_UTR	30.0%
	CAAAATGACCAATTCTGTAA+AGG	-	chr5_2:62067591-62067610	None:intergenic	30.0%
	AGAAGAGTGAATTCATCATT+GGG	-	chr5_2:62067797-62067816	None:intergenic	30.0%
	AAGAAGAGTGAATTCATCAT+TGG	-	chr5_2:62067798-62067817	None:intergenic	30.0%
	TCACTATCCATTTCACATAA+AGG	+	chr5_2:62067887-62067906	Msa0780350:CDS	30.0%
	CACTATCCATTTCACATAAA+GGG	+	chr5_2:62067888-62067907	Msa0780350:CDS	30.0%
!	ATATGATGGAAAATGAATGG+TGG	-	chr5_2:62067988-62068007	None:intergenic	30.0%
!	ACCATTCATTTTCCATCATA+TGG	+	chr5_2:62067987-62068006	Msa0780350:CDS	30.0%
!	ACCATATGATGGAAAATGAA+TGG	-	chr5_2:62067991-62068010	None:intergenic	30.0%
	ACTATCAAATCACCATATGA+TGG	-	chr5_2:62068002-62068021	None:intergenic	30.0%
!!!	ATCAATCTTTTTGGTGTCAT+AGG	-	chr5_2:62068036-62068055	None:intergenic	30.0%
!	AGAACGTAATAGTATTGGAA+CGG	-	chr5_2:62068119-62068138	None:intergenic	30.0%
!!	TTTTGTTTGTGAAAGTCTTG+TGG	-	chr5_2:62068168-62068187	None:intergenic	30.0%
!	TTTTTACATGAACTAGGCAT+AGG	-	chr5_2:62068254-62068273	None:intergenic	30.0%
!	GACTGTTGTCTGAAATATAA+GGG	-	chr5_2:62068310-62068329	None:intergenic	30.0%
!	AGACTGTTGTCTGAAATATA+AGG	-	chr5_2:62068311-62068330	None:intergenic	30.0%
	TATATTTCAGACAACAGTCT+TGG	+	chr5_2:62068311-62068330	Msa0780350:CDS	30.0%
!!	TCTTGGTCTTAGATTAACAT+GGG	+	chr5_2:62068328-62068347	Msa0780350:CDS	30.0%
	AATCTGAAGAAAGCAAAGAA+TGG	+	chr5_2:62068360-62068379	Msa0780350:CDS	30.0%
	GAGCATAATTTCCTTATACT+AGG	+	chr5_2:62068497-62068516	Msa0780350:intron	30.0%
	TTACGAAGTATATACTAGGT+TGG	+	chr5_2:62068645-62068664	Msa0780350:intron	30.0%
	TACGAAGTATATACTAGGTT+GGG	+	chr5_2:62068646-62068665	Msa0780350:intron	30.0%
	TAGTACATTATCTTTCGTGT+AGG	+	chr5_2:62068708-62068727	Msa0780350:intron	30.0%
	GCATAAAGGTTCATTTATCA+AGG	+	chr5_2:62068950-62068969	Msa0780350:CDS	30.0%
	TAAAGGTTCATTTATCAAGG+AGG	+	chr5_2:62068953-62068972	Msa0780350:CDS	30.0%
!	GATTTCTAAGGACATAGTAA+AGG	+	chr5_2:62069006-62069025	Msa0780350:exon	30.0%
	AGTGTCTAAACTTCAATGTT+GGG	-	chr5_2:62067526-62067545	None:intergenic	30.0%
	AAGTGTCTAAACTTCAATGT+TGG	-	chr5_2:62067527-62067546	None:intergenic	30.0%
!	TTTTTGCTCCTTTACAGAAT+TGG	+	chr5_2:62067580-62067599	Msa0780350:five_prime_UTR	30.0%
	CAAAATGACCAATTCTGTAA+AGG	-	chr5_2:62067591-62067610	None:intergenic	30.0%
	AGAAGAGTGAATTCATCATT+GGG	-	chr5_2:62067797-62067816	None:intergenic	30.0%
	AAGAAGAGTGAATTCATCAT+TGG	-	chr5_2:62067798-62067817	None:intergenic	30.0%
	TCACTATCCATTTCACATAA+AGG	+	chr5_2:62067887-62067906	Msa0780350:CDS	30.0%
	CACTATCCATTTCACATAAA+GGG	+	chr5_2:62067888-62067907	Msa0780350:CDS	30.0%
!	ATATGATGGAAAATGAATGG+TGG	-	chr5_2:62067988-62068007	None:intergenic	30.0%
!	ACCATTCATTTTCCATCATA+TGG	+	chr5_2:62067987-62068006	Msa0780350:CDS	30.0%
!	ACCATATGATGGAAAATGAA+TGG	-	chr5_2:62067991-62068010	None:intergenic	30.0%
	ACTATCAAATCACCATATGA+TGG	-	chr5_2:62068002-62068021	None:intergenic	30.0%
!!!	ATCAATCTTTTTGGTGTCAT+AGG	-	chr5_2:62068036-62068055	None:intergenic	30.0%
!	AGAACGTAATAGTATTGGAA+CGG	-	chr5_2:62068119-62068138	None:intergenic	30.0%
!!	TTTTGTTTGTGAAAGTCTTG+TGG	-	chr5_2:62068168-62068187	None:intergenic	30.0%
!	TTTTTACATGAACTAGGCAT+AGG	-	chr5_2:62068254-62068273	None:intergenic	30.0%
!	GACTGTTGTCTGAAATATAA+GGG	-	chr5_2:62068310-62068329	None:intergenic	30.0%
!	AGACTGTTGTCTGAAATATA+AGG	-	chr5_2:62068311-62068330	None:intergenic	30.0%
	TATATTTCAGACAACAGTCT+TGG	+	chr5_2:62068311-62068330	Msa0780350:CDS	30.0%
!!	TCTTGGTCTTAGATTAACAT+GGG	+	chr5_2:62068328-62068347	Msa0780350:CDS	30.0%
	AATCTGAAGAAAGCAAAGAA+TGG	+	chr5_2:62068360-62068379	Msa0780350:CDS	30.0%
	GAGCATAATTTCCTTATACT+AGG	+	chr5_2:62068497-62068516	Msa0780350:intron	30.0%
	TTACGAAGTATATACTAGGT+TGG	+	chr5_2:62068645-62068664	Msa0780350:intron	30.0%
	TACGAAGTATATACTAGGTT+GGG	+	chr5_2:62068646-62068665	Msa0780350:intron	30.0%
	TAGTACATTATCTTTCGTGT+AGG	+	chr5_2:62068708-62068727	Msa0780350:intron	30.0%
	GCATAAAGGTTCATTTATCA+AGG	+	chr5_2:62068950-62068969	Msa0780350:CDS	30.0%
	TAAAGGTTCATTTATCAAGG+AGG	+	chr5_2:62068953-62068972	Msa0780350:CDS	30.0%
!	GATTTCTAAGGACATAGTAA+AGG	+	chr5_2:62069006-62069025	Msa0780350:exon	30.0%
	CAAGTAGACTTTGTGAAGTT+TGG	-	chr5_2:62067617-62067636	None:intergenic	35.0%
	AGTGAATTCATCATTGGGAA+TGG	-	chr5_2:62067792-62067811	None:intergenic	35.0%
	GAAGATGAAAACCAAGAAGA+GGG	-	chr5_2:62067826-62067845	None:intergenic	35.0%
	TGAAATGGATAGTGAATGTC+AGG	-	chr5_2:62067882-62067901	None:intergenic	35.0%
	TGTTGACCCTTTATGTGAAA+TGG	-	chr5_2:62067897-62067916	None:intergenic	35.0%
	TATGATGATACCACTCTTTC+TGG	+	chr5_2:62067933-62067952	Msa0780350:CDS	35.0%
!!!	CTTTTTGGTGTCATAGGAAA+TGG	-	chr5_2:62068030-62068049	None:intergenic	35.0%
!	ATAGTATTGGAACGGTGTAA+AGG	-	chr5_2:62068111-62068130	None:intergenic	35.0%
!!	GTCTTGGTCTTAGATTAACA+TGG	+	chr5_2:62068327-62068346	Msa0780350:CDS	35.0%
	AAACTACCCAACCTAGTATA+AGG	-	chr5_2:62068511-62068530	None:intergenic	35.0%
!	ATATACTAGGTTGGGTAGTT+TGG	+	chr5_2:62068654-62068673	Msa0780350:intron	35.0%
	TCTTTCGTGTAGGATTGATT+CGG	+	chr5_2:62068718-62068737	Msa0780350:intron	35.0%
	CATTTATCAAGGAGGAAAGA+AGG	+	chr5_2:62068961-62068980	Msa0780350:CDS	35.0%
	GTGTCTAAACTTCAATGTTG+GGG	-	chr5_2:62067525-62067544	None:intergenic	35.0%
	CAAGTAGACTTTGTGAAGTT+TGG	-	chr5_2:62067617-62067636	None:intergenic	35.0%
	AGTGAATTCATCATTGGGAA+TGG	-	chr5_2:62067792-62067811	None:intergenic	35.0%
	GAAGATGAAAACCAAGAAGA+GGG	-	chr5_2:62067826-62067845	None:intergenic	35.0%
	TGAAATGGATAGTGAATGTC+AGG	-	chr5_2:62067882-62067901	None:intergenic	35.0%
	TGTTGACCCTTTATGTGAAA+TGG	-	chr5_2:62067897-62067916	None:intergenic	35.0%
	TATGATGATACCACTCTTTC+TGG	+	chr5_2:62067933-62067952	Msa0780350:CDS	35.0%
!!!	CTTTTTGGTGTCATAGGAAA+TGG	-	chr5_2:62068030-62068049	None:intergenic	35.0%
!	ATAGTATTGGAACGGTGTAA+AGG	-	chr5_2:62068111-62068130	None:intergenic	35.0%
!!	GTCTTGGTCTTAGATTAACA+TGG	+	chr5_2:62068327-62068346	Msa0780350:CDS	35.0%
	AAACTACCCAACCTAGTATA+AGG	-	chr5_2:62068511-62068530	None:intergenic	35.0%
!	ATATACTAGGTTGGGTAGTT+TGG	+	chr5_2:62068654-62068673	Msa0780350:intron	35.0%
	TCTTTCGTGTAGGATTGATT+CGG	+	chr5_2:62068718-62068737	Msa0780350:intron	35.0%
	CATTTATCAAGGAGGAAAGA+AGG	+	chr5_2:62068961-62068980	Msa0780350:CDS	35.0%
	GTAGACTTTGTGAAGTTTGG+TGG	-	chr5_2:62067614-62067633	None:intergenic	40.0%
!!	TGTTGGCTTCAAAAAGCTCA+GGG	-	chr5_2:62067641-62067660	None:intergenic	40.0%
!!	TTGTTGGCTTCAAAAAGCTC+AGG	-	chr5_2:62067642-62067661	None:intergenic	40.0%
	AGGACTTCTTGGTTTCTTGT+TGG	-	chr5_2:62067658-62067677	None:intergenic	40.0%
	GGAATGGAGAAGATGTTATG+AGG	-	chr5_2:62067776-62067795	None:intergenic	40.0%
	GGAAGATGAAAACCAAGAAG+AGG	-	chr5_2:62067827-62067846	None:intergenic	40.0%
	CAAACCTCTGTTAACTGCAA+CGG	+	chr5_2:62067846-62067865	Msa0780350:CDS	40.0%
	AATACCGTTGCAGTTAACAG+AGG	-	chr5_2:62067853-62067872	None:intergenic	40.0%
	AAGCTCAAAACCAGAAAGAG+TGG	-	chr5_2:62067946-62067965	None:intergenic	40.0%
!!!	ACTCTGTGGACACAGTTTTT+TGG	-	chr5_2:62068068-62068087	None:intergenic	40.0%
	TAAGGTTGAGAAAGACTCTG+TGG	-	chr5_2:62068082-62068101	None:intergenic	40.0%
!	AAAGTCTTGTGGAGCAATTG+AGG	-	chr5_2:62068157-62068176	None:intergenic	40.0%
	AACTAGGCATAGGAACTTCA+GGG	-	chr5_2:62068244-62068263	None:intergenic	40.0%
	TTCAACACATGTGCAGTTCT+TGG	+	chr5_2:62068883-62068902	Msa0780350:intron	40.0%
!	TCTCAGCATCTGTATTTTCG+TGG	+	chr5_2:62068906-62068925	Msa0780350:CDS	40.0%
	GTCACGACTACATCAATCTA+AGG	+	chr5_2:62069303-62069322	Msa0780350:three_prime_UTR	40.0%
	GTAGACTTTGTGAAGTTTGG+TGG	-	chr5_2:62067614-62067633	None:intergenic	40.0%
!!	TGTTGGCTTCAAAAAGCTCA+GGG	-	chr5_2:62067641-62067660	None:intergenic	40.0%
!!	TTGTTGGCTTCAAAAAGCTC+AGG	-	chr5_2:62067642-62067661	None:intergenic	40.0%
	AGGACTTCTTGGTTTCTTGT+TGG	-	chr5_2:62067658-62067677	None:intergenic	40.0%
	GGAATGGAGAAGATGTTATG+AGG	-	chr5_2:62067776-62067795	None:intergenic	40.0%
	GGAAGATGAAAACCAAGAAG+AGG	-	chr5_2:62067827-62067846	None:intergenic	40.0%
	CAAACCTCTGTTAACTGCAA+CGG	+	chr5_2:62067846-62067865	Msa0780350:CDS	40.0%
	AATACCGTTGCAGTTAACAG+AGG	-	chr5_2:62067853-62067872	None:intergenic	40.0%
	AAGCTCAAAACCAGAAAGAG+TGG	-	chr5_2:62067946-62067965	None:intergenic	40.0%
!!!	ACTCTGTGGACACAGTTTTT+TGG	-	chr5_2:62068068-62068087	None:intergenic	40.0%
	TAAGGTTGAGAAAGACTCTG+TGG	-	chr5_2:62068082-62068101	None:intergenic	40.0%
!	AAAGTCTTGTGGAGCAATTG+AGG	-	chr5_2:62068157-62068176	None:intergenic	40.0%
	AACTAGGCATAGGAACTTCA+GGG	-	chr5_2:62068244-62068263	None:intergenic	40.0%
	TTCAACACATGTGCAGTTCT+TGG	+	chr5_2:62068883-62068902	Msa0780350:intron	40.0%
!	TCTCAGCATCTGTATTTTCG+TGG	+	chr5_2:62068906-62068925	Msa0780350:CDS	40.0%
	GTCACGACTACATCAATCTA+AGG	+	chr5_2:62069303-62069322	Msa0780350:three_prime_UTR	40.0%
	CTTCTTTCTCACCCTCTTCT+TGG	+	chr5_2:62067812-62067831	Msa0780350:CDS	45.0%
	CGTTGCAGTTAACAGAGGTT+TGG	-	chr5_2:62067848-62067867	None:intergenic	45.0%
	GTTAACTGCAACGGTATTGC+TGG	+	chr5_2:62067855-62067874	Msa0780350:CDS	45.0%
	ACGGTGTAAAGGTGAGGTTA+AGG	-	chr5_2:62068100-62068119	None:intergenic	45.0%
	ATTGGAACGGTGTAAAGGTG+AGG	-	chr5_2:62068106-62068125	None:intergenic	45.0%
	GAACTAGGCATAGGAACTTC+AGG	-	chr5_2:62068245-62068264	None:intergenic	45.0%
!	CAGCATCTGTATTTTCGTGG+TGG	+	chr5_2:62068909-62068928	Msa0780350:CDS	45.0%
	GGCAACACTTGTAGGCATAA+AGG	+	chr5_2:62068936-62068955	Msa0780350:CDS	45.0%
	AGGACAATTGTTGCATAGCG+TGG	+	chr5_2:62068981-62069000	Msa0780350:CDS	45.0%
	CATAGCGTGGCAGATTTCTA+AGG	+	chr5_2:62068994-62069013	Msa0780350:CDS	45.0%
!!	TAACATCGCTTGAAGCGTTG+AGG	-	chr5_2:62069138-62069157	None:intergenic	45.0%
	AACGCTTCAAGCGATGTTAG+AGG	+	chr5_2:62069139-62069158	Msa0780350:three_prime_UTR	45.0%
	CTTCTTTCTCACCCTCTTCT+TGG	+	chr5_2:62067812-62067831	Msa0780350:CDS	45.0%
	CGTTGCAGTTAACAGAGGTT+TGG	-	chr5_2:62067848-62067867	None:intergenic	45.0%
	GTTAACTGCAACGGTATTGC+TGG	+	chr5_2:62067855-62067874	Msa0780350:CDS	45.0%
	ACGGTGTAAAGGTGAGGTTA+AGG	-	chr5_2:62068100-62068119	None:intergenic	45.0%
	ATTGGAACGGTGTAAAGGTG+AGG	-	chr5_2:62068106-62068125	None:intergenic	45.0%
	GAACTAGGCATAGGAACTTC+AGG	-	chr5_2:62068245-62068264	None:intergenic	45.0%
!	CAGCATCTGTATTTTCGTGG+TGG	+	chr5_2:62068909-62068928	Msa0780350:CDS	45.0%
	GGCAACACTTGTAGGCATAA+AGG	+	chr5_2:62068936-62068955	Msa0780350:CDS	45.0%
	AGGACAATTGTTGCATAGCG+TGG	+	chr5_2:62068981-62069000	Msa0780350:CDS	45.0%
	CATAGCGTGGCAGATTTCTA+AGG	+	chr5_2:62068994-62069013	Msa0780350:CDS	45.0%
!!	TAACATCGCTTGAAGCGTTG+AGG	-	chr5_2:62069138-62069157	None:intergenic	45.0%
	AACGCTTCAAGCGATGTTAG+AGG	+	chr5_2:62069139-62069158	Msa0780350:three_prime_UTR	45.0%
	TCTCACACAGCACGCAATAC+AGG	+	chr5_2:62068398-62068417	Msa0780350:CDS	50.0%
!	CTGTATTTTCGTGGTGGCAC+TGG	+	chr5_2:62068915-62068934	Msa0780350:CDS	50.0%
	TCTCACACAGCACGCAATAC+AGG	+	chr5_2:62068398-62068417	Msa0780350:CDS	50.0%
!	CTGTATTTTCGTGGTGGCAC+TGG	+	chr5_2:62068915-62068934	Msa0780350:CDS	50.0%
!!	GTGGCACTGGCAACACTTGT+AGG	+	chr5_2:62068928-62068947	Msa0780350:CDS	55.0%
!!	GTGGCACTGGCAACACTTGT+AGG	+	chr5_2:62068928-62068947	Msa0780350:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	62067525	62069391	62067525	ID=Msa0780350;Name=Msa0780350
chr5_2	mRNA	62067525	62069391	62067525	ID=Msa0780350-mRNA-1;Parent=Msa0780350;Name=Msa0780350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=273\|1\|1\|1\|1\|1\|2\|377\|245
chr5_2	exon	62067525	62068419	62067525	ID=Msa0780350-mRNA-1:exon:18306;Parent=Msa0780350-mRNA-1
chr5_2	exon	62068899	62069391	62068899	ID=Msa0780350-mRNA-1:exon:18307;Parent=Msa0780350-mRNA-1
chr5_2	five_prime_UTR	62067525	62067797	62067525	ID=Msa0780350-mRNA-1:five_prime_utr;Parent=Msa0780350-mRNA-1
chr5_2	CDS	62067798	62068419	62067798	ID=Msa0780350-mRNA-1:cds;Parent=Msa0780350-mRNA-1
chr5_2	CDS	62068899	62069014	62068899	ID=Msa0780350-mRNA-1:cds;Parent=Msa0780350-mRNA-1
chr5_2	three_prime_UTR	62069015	62069391	62069015	ID=Msa0780350-mRNA-1:three_prime_utr;Parent=Msa0780350-mRNA-1

Gene Sequence

>Msa0780350

ATGATGAATTCACTCTTCTTTCTCACCCTCTTCTTGGTTTTCATCTTCCAAACCTCTGTTAACTGCAACGGTATTGCTGGTCCTGACATTCACTATCCATTTCACATAAAGGGTCAACAGCAACAACAACAAGAGTATGATGATACCACTCTTTCTGGTTTTGAGCTTCTTCGCAAAGACAACATCACCACCATTCATTTTCCATCATATGGTGATTTGATAGTCAAGTCCATTTCCTATGACACCAAAAAGATTGATCTTCTTGATCCAAAAAACTGTGTCCACAGAGTCTTTCTCAACCTTAACCTCACCTTTACACCGTTCCAATACTATTACGTTCTTAAAAACTTCACATACCTCAATTGCTCCACAAGACTTTCACAAACAAAATTCATTGAAGTTCCATGTTTAAGTGATTCAAGTTATCATGTTTACACAGTTGACCCTGAAGTTCCTATGCCTAGTTCATGTAAAAAAGTCAAAACCATTGCTATTCCTTTCAAATATAGCCCTTATATTTCAGACAACAGTCTTGGTCTTAGATTAACATGGGACTTGCGTGAATCTGAAGAAAGCAAAGAATGGAACAAGACTAGAGATTCTCACACAGCACGCAATACAGTTCTTGGTCTCAGCATCTGTATTTTCGTGGTGGCACTGGCAACACTTGTAGGCATAAAGGTTCATTTATCAAGGAGGAAAGAAGGACAATTGTTGCATAGCGTGGCAGATTTCTAA

Protein sequence

>Msa0780350

MMNSLFFLTLFLVFIFQTSVNCNGIAGPDIHYPFHIKGQQQQQQEYDDTTLSGFELLRKDNITTIHFPSYGDLIVKSISYDTKKIDLLDPKNCVHRVFLNLNLTFTPFQYYYVLKNFTYLNCSTRLSQTKFIEVPCLSDSSYHVYTVDPEVPMPSSCKKVKTIAIPFKYSPYISDNSLGLRLTWDLRESEESKEWNKTRDSHTARNTVLGLSICIFVVALATLVGIKVHLSRRKEGQLLHSVADF*