AlfalfaGEDB | Msa1445570

M. sativa cultivar zhongmu-4 / Msa1445570

KEGG: K05291
GO: -
PFAM: PF10510.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445570	sp\|Q3SZL5\|PIGS_BOVIN	27.224	562	350	19	50	585	25	553	7.00e-39	153

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445570	A0A072TZI8	95.093	591	25	2	1	588	1	590	0.0	1161

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029630	Msa1445570	0.824361	8.414476e-54	-8.615850e-47
Msa0079920	Msa1445570	0.819195	1.319645e-52	-8.615850e-47
Msa0125450	Msa1445570	0.823724	1.187366e-53	-8.615850e-47
Msa0125540	Msa1445570	0.830648	2.608440e-55	-8.615850e-47
Msa0184040	Msa1445570	0.802709	4.933684e-49	-8.615850e-47
Msa0556060	Msa1445570	0.822301	2.549246e-53	-8.615850e-47
Msa0794970	Msa1445570	0.809090	2.246553e-50	-8.615850e-47
Msa0898040	Msa1445570	0.817735	2.825912e-52	-8.615850e-47
Msa1130980	Msa1445570	0.820713	5.931512e-53	-8.615850e-47
Msa1356610	Msa1445570	0.837666	4.543013e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445570	MtrunA17_Chr7g0235571	95.093	591	25	2	1	588	1	590	0.0	1161

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1445570	AT3G07180.1	61.525	590	195	9	27	587	13	599	0.0	695
Msa1445570	AT3G07180.3	60.508	590	193	10	27	587	13	591	0.0	675
Msa1445570	AT3G07180.2	55.874	349	124	8	27	346	13	360	3.06e-119	361
Msa1445570	AT3G07180.2	68.041	97	31	0	491	587	358	454	2.07e-33	133

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Find 174 sgRNAs with CRISPR-Local

Find 564 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGGAAGTACTTGGCT+TGG	0.491213	tig0031148:+9777	Msa1445570:CDS
AAAATGAAGACTTTGGTGTG+TGG	0.709097	tig0031148:-4199	None:intergenic
AAAATGATTGAATTTAACCG+CGG	0.716413	tig0031148:+2550	Msa1445570:CDS
AAAGATACAAGCAAGAAAAT+AGG	0.352639	tig0031148:+9762	Msa1445570:CDS
AAATCCTTTATACAGCTTTG+GGG	0.588176	tig0031148:-5724	None:intergenic
AAATGACAGTAGTGCTGACA+CGG	0.617382	tig0031148:+9921	Msa1445570:three_prime_UTR
AAATGGGGAGGAAGAGGTGA+AGG	0.504258	tig0031148:+2849	Msa1445570:CDS
AAATTTACACGGAAAGAGTA+AGG	0.466437	tig0031148:-2461	None:intergenic
AAATTTCGTGCTATCTTCAT+CGG	0.483311	tig0031148:+2478	Msa1445570:CDS
AACAGGTGAATTCTAATGAG+TGG	0.622364	tig0031148:+4658	Msa1445570:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTACACGGAAAGAGTAA+GGG	-	tig0031148:2463-2482	None:intergenic	30.0%
AAATTTACACGGAAAGAGTA+AGG	-	tig0031148:2464-2483	None:intergenic	30.0%
AAGATAGCACGAAATTTACA+CGG	-	tig0031148:2475-2494	None:intergenic	30.0%
AAATTTCGTGCTATCTTCAT+CGG	+	tig0031148:2478-2497	Msa1445570:CDS	30.0%
GGCTTCTAATAATGAACTAA+GGG	+	tig0031148:2513-2532	Msa1445570:CDS	30.0%
ATGAACTAAGGGATTCAATT+CGG	+	tig0031148:2524-2543	Msa1445570:CDS	30.0%
AAGAATATGGTGAATGTGTA+TGG	+	tig0031148:2796-2815	Msa1445570:CDS	30.0%
GAGTTTGCCAAATTTATAGT+TGG	+	tig0031148:3245-3264	Msa1445570:intron	30.0%
CTATCACCCAACTATAAATT+TGG	-	tig0031148:3255-3274	None:intergenic	30.0%
ATGGATGATGATCTTATTGT+AGG	+	tig0031148:4009-4028	Msa1445570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0031148	gene	2132	10195	2132	ID=Msa1445570;Name=Msa1445570
tig0031148	mRNA	2132	10195	2132	ID=Msa1445570-mRNA-1;Parent=Msa1445570;Name=Msa1445570-mRNA-1;_AED=0.17;_eAED=0.17;_QI=64\|1\|1\|1\|0.92\|0.85\|14\|347\|588
tig0031148	exon	2132	2623	2132	ID=Msa1445570-mRNA-1:exon:15043;Parent=Msa1445570-mRNA-1
tig0031148	exon	2723	3088	2723	ID=Msa1445570-mRNA-1:exon:15044;Parent=Msa1445570-mRNA-1
tig0031148	exon	4031	4106	4031	ID=Msa1445570-mRNA-1:exon:15045;Parent=Msa1445570-mRNA-1
tig0031148	exon	4191	4280	4191	ID=Msa1445570-mRNA-1:exon:15046;Parent=Msa1445570-mRNA-1
tig0031148	exon	4663	4736	4663	ID=Msa1445570-mRNA-1:exon:15047;Parent=Msa1445570-mRNA-1
tig0031148	exon	5507	5591	5507	ID=Msa1445570-mRNA-1:exon:15048;Parent=Msa1445570-mRNA-1
tig0031148	exon	5697	5786	5697	ID=Msa1445570-mRNA-1:exon:15049;Parent=Msa1445570-mRNA-1
tig0031148	exon	6104	6234	6104	ID=Msa1445570-mRNA-1:exon:15050;Parent=Msa1445570-mRNA-1
tig0031148	exon	8178	8259	8178	ID=Msa1445570-mRNA-1:exon:15051;Parent=Msa1445570-mRNA-1
tig0031148	exon	8348	8395	8348	ID=Msa1445570-mRNA-1:exon:15052;Parent=Msa1445570-mRNA-1
tig0031148	exon	8893	8965	8893	ID=Msa1445570-mRNA-1:exon:15053;Parent=Msa1445570-mRNA-1
tig0031148	exon	9075	9178	9075	ID=Msa1445570-mRNA-1:exon:15054;Parent=Msa1445570-mRNA-1
tig0031148	exon	9707	10145	9707	ID=Msa1445570-mRNA-1:exon:15055;Parent=Msa1445570-mRNA-1
tig0031148	exon	10168	10195	10168	ID=Msa1445570-mRNA-1:exon:15056;Parent=Msa1445570-mRNA-1
tig0031148	five_prime_UTR	2132	2195	2132	ID=Msa1445570-mRNA-1:five_prime_utr;Parent=Msa1445570-mRNA-1
tig0031148	CDS	2196	2623	2196	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	2723	3088	2723	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	4031	4106	4031	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	4191	4280	4191	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	4663	4736	4663	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	5507	5591	5507	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	5697	5786	5697	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	6104	6234	6104	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	8178	8259	8178	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	8348	8395	8348	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	8893	8965	8893	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	9075	9178	9075	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	CDS	9707	9826	9707	ID=Msa1445570-mRNA-1:cds;Parent=Msa1445570-mRNA-1
tig0031148	three_prime_UTR	9827	10145	9827	ID=Msa1445570-mRNA-1:three_prime_utr;Parent=Msa1445570-mRNA-1
tig0031148	three_prime_UTR	10168	10195	10168	ID=Msa1445570-mRNA-1:three_prime_utr;Parent=Msa1445570-mRNA-1

Gene Sequence

>Msa1445570

ATGGCGGAAATCTCAGATTCACCACCACCGGAACCAAAAACCACCGACGAAAACCCTCAAACTCCGATAACCGATTCAACTTCAAAATTCGATTCCCAAACCATGCGAAAAACTAAACCCGGCGTTAAACGTCTCTTCATCACTCTCACAGTTCTCATTTCTTTCGTTCTAGGTTTTCCTCTTCTCTGGAAATCCATTGAAATCTACCGTGCACCTCTTCCTTTCGACCGCATCGAATCCTTCTCCTCCAACATCGAATCCAGTCCCTTACTCTTTCCGTGTAAATTTCGTGCTATCTTCATCGGTTTCAGTTTTAGGGCTTCTAATAATGAACTAAGGGATTCAATTCGGAGCAAAATGATTGAATTTAACCGCGGTGATTCGCAATGCGGTTGCAATGGGGATTACTCTGTGTCTGTCGTTGAAAGGTCTGATGAAGTCAATGCTGTTGATTTTGGCGGGAAATTGAGGCGAAACGATGAAGAGGCGGATGAATTGGTGAAGAATATGGTGAATGTGTATGGAGAAGAGAAGGTGTATAGTGTTGTGGTGGTAAATGGGGAGGAAGAGGTGAAGGCTGTGGTTGGGAAGTACAGGCATGGGTGGATTGTTGGGAAGGTTTCGGAGGACGAAGCGGTTTTGCGTGTGGCGGAGATTTTTGGTAAGGTGTTTGTGAATGGTGGGAGTGAAGATGGTTCGATTCGGAGTGAGTTTATGCCGGTTGGTTCTGATGGGAGGATTGTTCTTTCTTTTAGTTTGCTTAATGCTGACCCAAGGGATTGGGTTTATGATTGGGATTTTGGTGAAATAGACTTGAAACCTGTTATTGAGGCTTTGCATCCTATAGCCGATGTCACTGTTGAAAGCCAGGTTTTGTACCACACACCAAAGTCTTCATTTTCTTCCTGGGATGACGAGCATGGCAGCCACATATTCAGTACTCAAGATCTTCCGTTCTTTGTGAATTCTAATGAGTGGCACTTAGATACTTCAGTTGCAGCTGGTGGGAGGTCAAAAGTATTGCAACTTGTGGTATATATTCCATCTGCAAAGGAGTGTCCTCTCCAACTAGAGCTTGCGAATGGAGAGATCTCTAAGACTAATGGCTTTATATCTCCAATGTGGGGAGGTGTTGTGGTATGGAACCCCCAAAGCTGTATAAAGGATTTGGAAAGTAAGGATCCAGTCAGACATATGATTTCTCCTCAGGATCTCCAGAAGCTTTTTGAAGTTCTCATGGGGCAGTTACGGCAACTTCTTGGTCTAAAGTCAGATGACCTTTATGTTGGTGAGTCTGGCACATCCATTCTCCTAGGGAGCGAAAGAGGTTTCACAGAATGGGAATTGGATGTCTTGTCAAGGAAGCATTTTTGCTTTAATCTCCTTTCATGTGCCACAACGCTTGGATCTCTTTCTAGATTGGTACAATCATTACCAAGGATGATTATAATGGATGAAATTGGAAAACAGGTGAAGTTTTCACTTGAGGCTGCAAAATCTGCTCAAAATAATGCAACTGTTGGAATGTATGATGCTTCTGCTGTATCATCAAGGCAATCAAGATCTCTTGCGGAGGATGCCTTTTTTCATCCTTCAATTATGTCCATCAGCTACTATTCATTTGAGCATTGTTTTGCTATCTATTCGCCATTTTTTCTGCCAGTTACAATGCATATCCTTCTAGCTGCGATAAGAGAATGGAAAAGATACAAGCAAGAAAATAGGAAGTACTTGGCTTGGAAGGGCAAAGCAAAAGCTGCAGCTTAA

Protein sequence

>Msa1445570

MAEISDSPPPEPKTTDENPQTPITDSTSKFDSQTMRKTKPGVKRLFITLTVLISFVLGFPLLWKSIEIYRAPLPFDRIESFSSNIESSPLLFPCKFRAIFIGFSFRASNNELRDSIRSKMIEFNRGDSQCGCNGDYSVSVVERSDEVNAVDFGGKLRRNDEEADELVKNMVNVYGEEKVYSVVVVNGEEEVKAVVGKYRHGWIVGKVSEDEAVLRVAEIFGKVFVNGGSEDGSIRSEFMPVGSDGRIVLSFSLLNADPRDWVYDWDFGEIDLKPVIEALHPIADVTVESQVLYHTPKSSFSSWDDEHGSHIFSTQDLPFFVNSNEWHLDTSVAAGGRSKVLQLVVYIPSAKECPLQLELANGEISKTNGFISPMWGGVVVWNPQSCIKDLESKDPVRHMISPQDLQKLFEVLMGQLRQLLGLKSDDLYVGESGTSILLGSERGFTEWELDVLSRKHFCFNLLSCATTLGSLSRLVQSLPRMIIMDEIGKQVKFSLEAAKSAQNNATVGMYDASAVSSRQSRSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVTMHILLAAIREWKRYKQENRKYLAWKGKAKAAA*