AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367590 MtrunA17_Chr3g0145771 100.000 151 0 0 1 151 66 216 3.73e-111 314
Msa1367590 MtrunA17_Chr3g0139231 72.143 140 33 2 1 137 1 137 6.88e-71 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367590 AT1G02140.1 88.591 149 17 0 3 151 2 150 8.19e-99 281

Find 64 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCACTTGCTTCCATTGT+TGG 0.189002 tig0018513:+240339 Msa1367590:three_prime_UTR
TAGTTTCGAGTTTGTCTTCT+TGG 0.210632 tig0018513:+240171 Msa1367590:three_prime_UTR
GGTGGAACCAGGTTAATATT+AGG 0.283202 tig0018513:-240439 None:intergenic
TTCAAACTTCATTAGCTAAA+GGG 0.324358 tig0018513:-240220 None:intergenic
AAACTCTGGTGGTTGCTTGC+TGG 0.326575 tig0018513:+239011 Msa1367590:five_prime_UTR
TCCTTTACTACTTCCAAGAT+TGG 0.348725 tig0018513:+239482 Msa1367590:CDS
TAAAAGATGCGAAGGCCTTC+AGG 0.353524 tig0018513:-239536 None:intergenic
AAAGGTTATCCATTCAAATC+AGG 0.354030 tig0018513:-240269 None:intergenic
CAGGAACTTGAGATTGTTAT+GGG 0.355218 tig0018513:+239446 Msa1367590:CDS
TCAGGAACTTGAGATTGTTA+TGG 0.374992 tig0018513:+239445 Msa1367590:CDS
AATCGATCGGCGGTTATTGT+TGG 0.395434 tig0018513:+239039 Msa1367590:five_prime_UTR
TTTCAAACTTCATTAGCTAA+AGG 0.412577 tig0018513:-240221 None:intergenic
CGACCAACACGGTCTGGTTC+AGG 0.414314 tig0018513:-239422 None:intergenic
GAGATACTACGTTGGTCATA+AGG 0.416637 tig0018513:+239106 Msa1367590:CDS
GTGGAACCAGGTTAATATTA+GGG 0.417421 tig0018513:-240438 None:intergenic
TATCATACAACACTAAATAC+TGG 0.420013 tig0018513:-240392 None:intergenic
ATCAACAAGAGAACCAATCT+TGG 0.427300 tig0018513:-239495 None:intergenic
TAATAGTGAACATCTTATAT+AGG 0.432174 tig0018513:-240150 None:intergenic
ACCAGACCGTGTTGGTCGTC+AGG 0.432239 tig0018513:+239427 Msa1367590:CDS
GTTGGTCATAAGGGTAAATT+CGG 0.435065 tig0018513:+239116 Msa1367590:CDS
AATATGTATCGGTGATGAAC+AGG 0.447090 tig0018513:+240242 Msa1367590:three_prime_UTR
TCGAGTTGGGCCTTTCCACC+AGG 0.453183 tig0018513:-238937 None:intergenic
TCCTGACGACCAACACGGTC+TGG 0.460919 tig0018513:-239428 None:intergenic
CAGACAGCATGCTCCAACAA+TGG 0.471628 tig0018513:-240352 None:intergenic
ATAAACCTCCTTACGAATGA+TGG 0.480860 tig0018513:-239216 None:intergenic
GGCTACAAAAGAAGCGGGCC+TGG 0.482296 tig0018513:+238919 None:intergenic
ACCAATCTTGGAAGTAGTAA+AGG 0.483775 tig0018513:-239483 None:intergenic
ATCAATCATGTGGTGGAACC+AGG 0.493929 tig0018513:-240450 None:intergenic
AGATACTACGTTGGTCATAA+GGG 0.498454 tig0018513:+239107 Msa1367590:CDS
TGAAGGAGGATGATAACAAC+TGG 0.499238 tig0018513:+239399 Msa1367590:CDS
CCACCACATGATTGATGACA+TGG 0.502437 tig0018513:+240457 Msa1367590:three_prime_UTR
GCGGTTATTGTTGGATCAGT+AGG 0.504722 tig0018513:+239048 Msa1367590:five_prime_UTR
AAGAAGCGGGCCTGGTGGAA+AGG 0.505575 tig0018513:+238927 Msa1367590:five_prime_UTR
TCAAACTTCATTAGCTAAAG+GGG 0.509998 tig0018513:-240219 None:intergenic
ACAGGAAAACCTGATTTGAA+TGG 0.511064 tig0018513:+240260 Msa1367590:three_prime_UTR
GTTGGAGCATGCTGTCTGTA+TGG 0.513636 tig0018513:+240357 Msa1367590:three_prime_UTR
GCATAACGAAGCTTACCATC+TGG 0.517649 tig0018513:-239167 None:intergenic
AGTAAGGGCTACAAAAGAAG+CGG 0.544722 tig0018513:+238913 None:intergenic
TCTACTCCCTAATATTAACC+TGG 0.548482 tig0018513:+240432 Msa1367590:three_prime_UTR
CGACACTCACGAAGAACAGC+AGG 0.558457 tig0018513:-239245 None:intergenic
TCAACAACAACAGATTATGA+AGG 0.558662 tig0018513:+239382 Msa1367590:intron
GAGTTTGAGTTCCGTCCAGA+TGG 0.565284 tig0018513:+239152 Msa1367590:CDS
CAAGATAGTAAAAGATGCGA+AGG 0.565769 tig0018513:-239544 None:intergenic
CGATACCATCATTCGTAAGG+AGG 0.567991 tig0018513:+239211 Msa1367590:CDS
ATGAAGTTTGAAATATGTAT+CGG 0.572232 tig0018513:+240231 Msa1367590:three_prime_UTR
AAAGCAAAGATCTGGTACAA+AGG 0.574547 tig0018513:-240287 None:intergenic
TTATTGTTGGATCAGTAGGA+TGG 0.578574 tig0018513:+239052 Msa1367590:exon
AAACGATACCATCATTCGTA+AGG 0.579284 tig0018513:+239208 Msa1367590:CDS
CTCGCAGTCATATTAAACTC+TGG 0.583050 tig0018513:+238997 Msa1367590:five_prime_UTR
GTAAGGGCTACAAAAGAAGC+GGG 0.590136 tig0018513:+238914 None:intergenic
CAAAGCAGTGCTGATCCTGA+AGG 0.593679 tig0018513:+239521 Msa1367590:CDS
CTTGCTGGTTGAGAATCGAT+CGG 0.600812 tig0018513:+239026 Msa1367590:five_prime_UTR
TATTGTTGGATCAGTAGGAT+GGG 0.602444 tig0018513:+239053 Msa1367590:exon
CCATGTCATCAATCATGTGG+TGG 0.605732 tig0018513:-240457 None:intergenic
AACGAAGCTTACCATCTGGA+CGG 0.634567 tig0018513:-239163 None:intergenic
AATCCATGTCATCAATCATG+TGG 0.640325 tig0018513:-240460 None:intergenic
ACAACAACAGATTATGAAGG+AGG 0.642882 tig0018513:+239385 Msa1367590:intron
CAAGTTCCTGACGACCAACA+CGG 0.649649 tig0018513:-239433 None:intergenic
TACAAAAGAAGCGGGCCTGG+TGG 0.662815 tig0018513:+238922 None:intergenic
GCAGTCATATTAAACTCTGG+TGG 0.677409 tig0018513:+239000 Msa1367590:five_prime_UTR
TGGCCTGAACCAGACCGTGT+TGG 0.677826 tig0018513:+239419 Msa1367590:CDS
GCTGGTTGAGAATCGATCGG+CGG 0.697178 tig0018513:+239029 Msa1367590:five_prime_UTR
TCGTATTATTTCTGACAGCG+AGG 0.703758 tig0018513:+239268 Msa1367590:CDS
AGGAACTTGAGATTGTTATG+GGG 0.708397 tig0018513:+239447 Msa1367590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATAAGCAATAATAAAAA+AGG - tig0018513:239357-239376 None:intergenic 15.0%
!! TAAAGTATATTTGTGAATTT+AGG - tig0018513:239700-239719 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG - tig0018513:240076-240095 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG + tig0018513:240077-240096 Msa1367590:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG + tig0018513:240299-240318 Msa1367590:three_prime_UTR 15.0%
!! GTTATAAGCAATAATAAAAA+AGG - tig0018513:239357-239376 None:intergenic 15.0%
!! TAAAGTATATTTGTGAATTT+AGG - tig0018513:239700-239719 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG - tig0018513:240076-240095 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG + tig0018513:240077-240096 Msa1367590:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG + tig0018513:240299-240318 Msa1367590:three_prime_UTR 15.0%
!! AATAATAAAAAAGGAAAAGG+GGG - tig0018513:239348-239367 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG - tig0018513:239349-239368 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG - tig0018513:239350-239369 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG - tig0018513:239351-239370 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG - tig0018513:239952-239971 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG - tig0018513:239953-239972 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG - tig0018513:240153-240172 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG + tig0018513:240231-240250 Msa1367590:three_prime_UTR 20.0%
!! AAATATAAAAAGCAAAGATC+TGG - tig0018513:240298-240317 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG + tig0018513:240305-240324 Msa1367590:three_prime_UTR 20.0%
!! AATAATAAAAAAGGAAAAGG+GGG - tig0018513:239348-239367 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG - tig0018513:239349-239368 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG - tig0018513:239350-239369 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG - tig0018513:239351-239370 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG - tig0018513:239952-239971 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG - tig0018513:239953-239972 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG - tig0018513:240153-240172 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG + tig0018513:240231-240250 Msa1367590:three_prime_UTR 20.0%
!! AAATATAAAAAGCAAAGATC+TGG - tig0018513:240298-240317 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG + tig0018513:240305-240324 Msa1367590:three_prime_UTR 20.0%
!! TAAATTCGGACATGAATTTT+TGG + tig0018513:239130-239149 Msa1367590:CDS 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG - tig0018513:239347-239366 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG - tig0018513:239590-239609 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG - tig0018513:239635-239654 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG - tig0018513:239695-239714 None:intergenic 25.0%
! CACAAATATACTTTAGACAA+TGG + tig0018513:239705-239724 Msa1367590:intron 25.0%
! TCATATATTGATACTTTAGC+TGG + tig0018513:239730-239749 Msa1367590:intron 25.0%
! CATATATTGATACTTTAGCT+GGG + tig0018513:239731-239750 Msa1367590:intron 25.0%
! TTTCAATATAGCTGATGTAA+TGG + tig0018513:239755-239774 Msa1367590:intron 25.0%
! CAGTAAAAAAATAACAGCAA+AGG - tig0018513:239811-239830 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG - tig0018513:239951-239970 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG - tig0018513:240030-240049 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG - tig0018513:240031-240050 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG - tig0018513:240223-240242 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG - tig0018513:240224-240243 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG - tig0018513:240395-240414 None:intergenic 25.0%
!! TAAATTCGGACATGAATTTT+TGG + tig0018513:239130-239149 Msa1367590:CDS 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG - tig0018513:239347-239366 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG - tig0018513:239590-239609 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG - tig0018513:239635-239654 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG - tig0018513:239695-239714 None:intergenic 25.0%
! CACAAATATACTTTAGACAA+TGG + tig0018513:239705-239724 Msa1367590:intron 25.0%
! TCATATATTGATACTTTAGC+TGG + tig0018513:239730-239749 Msa1367590:intron 25.0%
! CATATATTGATACTTTAGCT+GGG + tig0018513:239731-239750 Msa1367590:intron 25.0%
! TTTCAATATAGCTGATGTAA+TGG + tig0018513:239755-239774 Msa1367590:intron 25.0%
! CAGTAAAAAAATAACAGCAA+AGG - tig0018513:239811-239830 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG - tig0018513:239951-239970 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG - tig0018513:240030-240049 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG - tig0018513:240031-240050 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG - tig0018513:240223-240242 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG - tig0018513:240224-240243 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG - tig0018513:240395-240414 None:intergenic 25.0%
! TTTTACTTGAGATACTACGT+TGG + tig0018513:239098-239117 Msa1367590:CDS 30.0%
!! GATGGTATCGTTTTTGTAAT+TGG - tig0018513:239201-239220 None:intergenic 30.0%
TAATAAAAAAGGAAAAGGGG+GGG - tig0018513:239346-239365 None:intergenic 30.0%
TCAACAACAACAGATTATGA+AGG + tig0018513:239382-239401 Msa1367590:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG + tig0018513:239550-239569 Msa1367590:CDS 30.0%
TAACTCAAATTAAACTGACC+TGG + tig0018513:239644-239663 Msa1367590:intron 30.0%
AATGATATATGTAAGTTGCC+AGG - tig0018513:239665-239684 None:intergenic 30.0%
!! GCAAAGGAATTCTAAAGTAT+GGG - tig0018513:239795-239814 None:intergenic 30.0%
!! AGCAAAGGAATTCTAAAGTA+TGG - tig0018513:239796-239815 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG - tig0018513:239862-239881 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG - tig0018513:239863-239882 None:intergenic 30.0%
!!! TGCTAGTATTTTTTAGCCTT+TGG + tig0018513:239884-239903 Msa1367590:intron 30.0%
!!! GCTAGTATTTTTTAGCCTTT+GGG + tig0018513:239885-239904 Msa1367590:intron 30.0%
TCAAACTTCATTAGCTAAAG+GGG - tig0018513:240222-240241 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG - tig0018513:240272-240291 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG + tig0018513:240478-240497 Msa1367590:three_prime_UTR 30.0%
! TTTTACTTGAGATACTACGT+TGG + tig0018513:239098-239117 Msa1367590:CDS 30.0%
!! GATGGTATCGTTTTTGTAAT+TGG - tig0018513:239201-239220 None:intergenic 30.0%
TAATAAAAAAGGAAAAGGGG+GGG - tig0018513:239346-239365 None:intergenic 30.0%
TCAACAACAACAGATTATGA+AGG + tig0018513:239382-239401 Msa1367590:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG + tig0018513:239550-239569 Msa1367590:CDS 30.0%
TAACTCAAATTAAACTGACC+TGG + tig0018513:239644-239663 Msa1367590:intron 30.0%
AATGATATATGTAAGTTGCC+AGG - tig0018513:239665-239684 None:intergenic 30.0%
!! GCAAAGGAATTCTAAAGTAT+GGG - tig0018513:239795-239814 None:intergenic 30.0%
!! AGCAAAGGAATTCTAAAGTA+TGG - tig0018513:239796-239815 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG - tig0018513:239862-239881 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG - tig0018513:239863-239882 None:intergenic 30.0%
!!! TGCTAGTATTTTTTAGCCTT+TGG + tig0018513:239884-239903 Msa1367590:intron 30.0%
!!! GCTAGTATTTTTTAGCCTTT+GGG + tig0018513:239885-239904 Msa1367590:intron 30.0%
TCAAACTTCATTAGCTAAAG+GGG - tig0018513:240222-240241 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG - tig0018513:240272-240291 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG + tig0018513:240478-240497 Msa1367590:three_prime_UTR 30.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG - tig0018513:238953-238972 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG - tig0018513:238954-238973 None:intergenic 35.0%
TTATTGTTGGATCAGTAGGA+TGG + tig0018513:239052-239071 Msa1367590:exon 35.0%
TATTGTTGGATCAGTAGGAT+GGG + tig0018513:239053-239072 Msa1367590:exon 35.0%
AGATACTACGTTGGTCATAA+GGG + tig0018513:239107-239126 Msa1367590:CDS 35.0%
GTTGGTCATAAGGGTAAATT+CGG + tig0018513:239116-239135 Msa1367590:CDS 35.0%
AAACGATACCATCATTCGTA+AGG + tig0018513:239208-239227 Msa1367590:CDS 35.0%
ATAAACCTCCTTACGAATGA+TGG - tig0018513:239219-239238 None:intergenic 35.0%
ACAACAACAGATTATGAAGG+AGG + tig0018513:239385-239404 Msa1367590:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG + tig0018513:239445-239464 Msa1367590:CDS 35.0%
CAGGAACTTGAGATTGTTAT+GGG + tig0018513:239446-239465 Msa1367590:CDS 35.0%
AGGAACTTGAGATTGTTATG+GGG + tig0018513:239447-239466 Msa1367590:CDS 35.0%
TCCTTTACTACTTCCAAGAT+TGG + tig0018513:239482-239501 Msa1367590:CDS 35.0%
ACCAATCTTGGAAGTAGTAA+AGG - tig0018513:239486-239505 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG - tig0018513:239498-239517 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG - tig0018513:239547-239566 None:intergenic 35.0%
! TATCTGTGCTTAAGCAGTTT+TGG - tig0018513:239608-239627 None:intergenic 35.0%
TGTGAATTTAGGCATGGTAA+TGG - tig0018513:239689-239708 None:intergenic 35.0%
! TTTACTGTATTTCTGCAGAG+TGG + tig0018513:239824-239843 Msa1367590:intron 35.0%
AAAATGACAACACATCATGG+GGG - tig0018513:239860-239879 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG - tig0018513:239861-239880 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG + tig0018513:239892-239911 Msa1367590:intron 35.0%
AGTGGAAAAAATCACAGCAA+AGG - tig0018513:239920-239939 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG - tig0018513:239938-239957 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG - tig0018513:240019-240038 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG - tig0018513:240020-240039 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG - tig0018513:240063-240082 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG + tig0018513:240171-240190 Msa1367590:three_prime_UTR 35.0%
! AATATGTATCGGTGATGAAC+AGG + tig0018513:240242-240261 Msa1367590:three_prime_UTR 35.0%
! ACAGGAAAACCTGATTTGAA+TGG + tig0018513:240260-240279 Msa1367590:three_prime_UTR 35.0%
AAAGCAAAGATCTGGTACAA+AGG - tig0018513:240290-240309 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG + tig0018513:240432-240451 Msa1367590:three_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG - tig0018513:240441-240460 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG - tig0018513:240463-240482 None:intergenic 35.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG - tig0018513:238953-238972 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG - tig0018513:238954-238973 None:intergenic 35.0%
TTATTGTTGGATCAGTAGGA+TGG + tig0018513:239052-239071 Msa1367590:exon 35.0%
TATTGTTGGATCAGTAGGAT+GGG + tig0018513:239053-239072 Msa1367590:exon 35.0%
AGATACTACGTTGGTCATAA+GGG + tig0018513:239107-239126 Msa1367590:CDS 35.0%
GTTGGTCATAAGGGTAAATT+CGG + tig0018513:239116-239135 Msa1367590:CDS 35.0%
AAACGATACCATCATTCGTA+AGG + tig0018513:239208-239227 Msa1367590:CDS 35.0%
ATAAACCTCCTTACGAATGA+TGG - tig0018513:239219-239238 None:intergenic 35.0%
ACAACAACAGATTATGAAGG+AGG + tig0018513:239385-239404 Msa1367590:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG + tig0018513:239445-239464 Msa1367590:CDS 35.0%
CAGGAACTTGAGATTGTTAT+GGG + tig0018513:239446-239465 Msa1367590:CDS 35.0%
AGGAACTTGAGATTGTTATG+GGG + tig0018513:239447-239466 Msa1367590:CDS 35.0%
TCCTTTACTACTTCCAAGAT+TGG + tig0018513:239482-239501 Msa1367590:CDS 35.0%
ACCAATCTTGGAAGTAGTAA+AGG - tig0018513:239486-239505 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG - tig0018513:239498-239517 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG - tig0018513:239547-239566 None:intergenic 35.0%
! TATCTGTGCTTAAGCAGTTT+TGG - tig0018513:239608-239627 None:intergenic 35.0%
TGTGAATTTAGGCATGGTAA+TGG - tig0018513:239689-239708 None:intergenic 35.0%
! TTTACTGTATTTCTGCAGAG+TGG + tig0018513:239824-239843 Msa1367590:intron 35.0%
AAAATGACAACACATCATGG+GGG - tig0018513:239860-239879 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG - tig0018513:239861-239880 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG + tig0018513:239892-239911 Msa1367590:intron 35.0%
AGTGGAAAAAATCACAGCAA+AGG - tig0018513:239920-239939 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG - tig0018513:239938-239957 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG - tig0018513:240019-240038 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG - tig0018513:240020-240039 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG - tig0018513:240063-240082 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG + tig0018513:240171-240190 Msa1367590:three_prime_UTR 35.0%
! AATATGTATCGGTGATGAAC+AGG + tig0018513:240242-240261 Msa1367590:three_prime_UTR 35.0%
! ACAGGAAAACCTGATTTGAA+TGG + tig0018513:240260-240279 Msa1367590:three_prime_UTR 35.0%
AAAGCAAAGATCTGGTACAA+AGG - tig0018513:240290-240309 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG + tig0018513:240432-240451 Msa1367590:three_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG - tig0018513:240441-240460 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG - tig0018513:240463-240482 None:intergenic 35.0%
CTCGCAGTCATATTAAACTC+TGG + tig0018513:238997-239016 Msa1367590:five_prime_UTR 40.0%
GCAGTCATATTAAACTCTGG+TGG + tig0018513:239000-239019 Msa1367590:five_prime_UTR 40.0%
GAGATACTACGTTGGTCATA+AGG + tig0018513:239106-239125 Msa1367590:CDS 40.0%
!! TCGTATTATTTCTGACAGCG+AGG + tig0018513:239268-239287 Msa1367590:CDS 40.0%
TGAAGGAGGATGATAACAAC+TGG + tig0018513:239399-239418 Msa1367590:CDS 40.0%
TTGATGTCAGCTTATGCCTT+TGG + tig0018513:240044-240063 Msa1367590:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG + tig0018513:240339-240358 Msa1367590:three_prime_UTR 40.0%
GGTGGAACCAGGTTAATATT+AGG - tig0018513:240442-240461 None:intergenic 40.0%
CTCGCAGTCATATTAAACTC+TGG + tig0018513:238997-239016 Msa1367590:five_prime_UTR 40.0%
GCAGTCATATTAAACTCTGG+TGG + tig0018513:239000-239019 Msa1367590:five_prime_UTR 40.0%
GAGATACTACGTTGGTCATA+AGG + tig0018513:239106-239125 Msa1367590:CDS 40.0%
!! TCGTATTATTTCTGACAGCG+AGG + tig0018513:239268-239287 Msa1367590:CDS 40.0%
TGAAGGAGGATGATAACAAC+TGG + tig0018513:239399-239418 Msa1367590:CDS 40.0%
TTGATGTCAGCTTATGCCTT+TGG + tig0018513:240044-240063 Msa1367590:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG + tig0018513:240339-240358 Msa1367590:three_prime_UTR 40.0%
GGTGGAACCAGGTTAATATT+AGG - tig0018513:240442-240461 None:intergenic 40.0%
! CTTGCTGGTTGAGAATCGAT+CGG + tig0018513:239026-239045 Msa1367590:five_prime_UTR 45.0%
AATCGATCGGCGGTTATTGT+TGG + tig0018513:239039-239058 Msa1367590:five_prime_UTR 45.0%
GCGGTTATTGTTGGATCAGT+AGG + tig0018513:239048-239067 Msa1367590:five_prime_UTR 45.0%
AACGAAGCTTACCATCTGGA+CGG - tig0018513:239166-239185 None:intergenic 45.0%
GCATAACGAAGCTTACCATC+TGG - tig0018513:239170-239189 None:intergenic 45.0%
CGATACCATCATTCGTAAGG+AGG + tig0018513:239211-239230 Msa1367590:CDS 45.0%
GAAAAGGGGGGGTGAAATTA+GGG - tig0018513:239335-239354 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG - tig0018513:239539-239558 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG - tig0018513:239903-239922 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG - tig0018513:240453-240472 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG - tig0018513:240460-240479 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG + tig0018513:240457-240476 Msa1367590:three_prime_UTR 45.0%
! CTTGCTGGTTGAGAATCGAT+CGG + tig0018513:239026-239045 Msa1367590:five_prime_UTR 45.0%
AATCGATCGGCGGTTATTGT+TGG + tig0018513:239039-239058 Msa1367590:five_prime_UTR 45.0%
GCGGTTATTGTTGGATCAGT+AGG + tig0018513:239048-239067 Msa1367590:five_prime_UTR 45.0%
AACGAAGCTTACCATCTGGA+CGG - tig0018513:239166-239185 None:intergenic 45.0%
GCATAACGAAGCTTACCATC+TGG - tig0018513:239170-239189 None:intergenic 45.0%
CGATACCATCATTCGTAAGG+AGG + tig0018513:239211-239230 Msa1367590:CDS 45.0%
GAAAAGGGGGGGTGAAATTA+GGG - tig0018513:239335-239354 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG - tig0018513:239539-239558 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG - tig0018513:239903-239922 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG - tig0018513:240453-240472 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG - tig0018513:240460-240479 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG + tig0018513:240457-240476 Msa1367590:three_prime_UTR 45.0%
AAACTCTGGTGGTTGCTTGC+TGG + tig0018513:239011-239030 Msa1367590:five_prime_UTR 50.0%
! GAGTTTGAGTTCCGTCCAGA+TGG + tig0018513:239152-239171 Msa1367590:CDS 50.0%
GGGGGGTGAAATTAGGGTTA+GGG - tig0018513:239329-239348 None:intergenic 50.0%
GGAAAAGGGGGGGTGAAATT+AGG - tig0018513:239336-239355 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG - tig0018513:239436-239455 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG + tig0018513:239521-239540 Msa1367590:CDS 50.0%
! GTATTGGGTGACTAATGGGC+AGG - tig0018513:240015-240034 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG - tig0018513:240355-240374 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG + tig0018513:240357-240376 Msa1367590:three_prime_UTR 50.0%
AAACTCTGGTGGTTGCTTGC+TGG + tig0018513:239011-239030 Msa1367590:five_prime_UTR 50.0%
! GAGTTTGAGTTCCGTCCAGA+TGG + tig0018513:239152-239171 Msa1367590:CDS 50.0%
GGGGGGTGAAATTAGGGTTA+GGG - tig0018513:239329-239348 None:intergenic 50.0%
GGAAAAGGGGGGGTGAAATT+AGG - tig0018513:239336-239355 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG - tig0018513:239436-239455 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG + tig0018513:239521-239540 Msa1367590:CDS 50.0%
! GTATTGGGTGACTAATGGGC+AGG - tig0018513:240015-240034 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG - tig0018513:240355-240374 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG + tig0018513:240357-240376 Msa1367590:three_prime_UTR 50.0%
GCTGGTTGAGAATCGATCGG+CGG + tig0018513:239029-239048 Msa1367590:five_prime_UTR 55.0%
CGACACTCACGAAGAACAGC+AGG - tig0018513:239248-239267 None:intergenic 55.0%
GGGGGGGTGAAATTAGGGTT+AGG - tig0018513:239330-239349 None:intergenic 55.0%
GCTGGTTGAGAATCGATCGG+CGG + tig0018513:239029-239048 Msa1367590:five_prime_UTR 55.0%
CGACACTCACGAAGAACAGC+AGG - tig0018513:239248-239267 None:intergenic 55.0%
GGGGGGGTGAAATTAGGGTT+AGG - tig0018513:239330-239349 None:intergenic 55.0%
AAGAAGCGGGCCTGGTGGAA+AGG + tig0018513:238927-238946 Msa1367590:five_prime_UTR 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG - tig0018513:238940-238959 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG + tig0018513:239419-239438 Msa1367590:CDS 60.0%
! CGACCAACACGGTCTGGTTC+AGG - tig0018513:239425-239444 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG + tig0018513:239427-239446 Msa1367590:CDS 60.0%
TCCTGACGACCAACACGGTC+TGG - tig0018513:239431-239450 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG - tig0018513:240011-240030 None:intergenic 60.0%
AAGAAGCGGGCCTGGTGGAA+AGG + tig0018513:238927-238946 Msa1367590:five_prime_UTR 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG - tig0018513:238940-238959 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG + tig0018513:239419-239438 Msa1367590:CDS 60.0%
! CGACCAACACGGTCTGGTTC+AGG - tig0018513:239425-239444 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG + tig0018513:239427-239446 Msa1367590:CDS 60.0%
TCCTGACGACCAACACGGTC+TGG - tig0018513:239431-239450 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG - tig0018513:240011-240030 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0018513 gene 238924 240504 238924 ID=Msa1367590;Name=Msa1367590
tig0018513 mRNA 238924 240504 238924 ID=Msa1367590-mRNA-1;Parent=Msa1367590;Name=Msa1367590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=147|1|1|1|1|1|3|346|151
tig0018513 exon 238924 239289 238924 ID=Msa1367590-mRNA-1:exon:15540;Parent=Msa1367590-mRNA-1
tig0018513 exon 239395 239571 239395 ID=Msa1367590-mRNA-1:exon:15541;Parent=Msa1367590-mRNA-1
tig0018513 exon 240099 240504 240099 ID=Msa1367590-mRNA-1:exon:15542;Parent=Msa1367590-mRNA-1
tig0018513 five_prime_UTR 238924 239070 238924 ID=Msa1367590-mRNA-1:five_prime_utr;Parent=Msa1367590-mRNA-1
tig0018513 CDS 239071 239289 239071 ID=Msa1367590-mRNA-1:cds;Parent=Msa1367590-mRNA-1
tig0018513 CDS 239395 239571 239395 ID=Msa1367590-mRNA-1:cds;Parent=Msa1367590-mRNA-1
tig0018513 CDS 240099 240158 240099 ID=Msa1367590-mRNA-1:cds;Parent=Msa1367590-mRNA-1
tig0018513 three_prime_UTR 240159 240504 240159 ID=Msa1367590-mRNA-1:three_prime_utr;Parent=Msa1367590-mRNA-1
Gene Sequence

>Msa1367590

ATGGGAAGCGAAGAAGAGAATGCAGAGTTTTACTTGAGATACTACGTTGGTCATAAGGGTAAATTCGGACATGAATTTTTGGAGTTTGAGTTCCGTCCAGATGGTAAGCTTCGTTATGCTAACAATTCCAATTACAAAAACGATACCATCATTCGTAAGGAGGTTTATCTTACTCCTGCTGTTCTTCGTGAGTGTCGTCGTATTATTTCTGACAGCGAGATTATGAAGGAGGATGATAACAACTGGCCTGAACCAGACCGTGTTGGTCGTCAGGAACTTGAGATTGTTATGGGGAATGAGCATATCTCCTTTACTACTTCCAAGATTGGTTCTCTTGTTGATGTTCAAAGCAGTGCTGATCCTGAAGGCCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATATAA

Protein sequence

>Msa1367590

MGSEEENAEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIISDSEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI*