AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1418340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418340 MtrunA17_Chr7g0276201 99.165 479 4 0 1 479 1 479 0.0 973
Msa1418340 MtrunA17_Chr4g0026301 53.611 360 160 4 85 443 91 444 2.70e-140 412
Msa1418340 MtrunA17_Chr7g0266451 50.248 404 182 7 86 479 83 477 1.10e-131 389
Msa1418340 MtrunA17_Chr7g0217261 50.970 361 170 4 84 443 329 683 8.44e-125 379
Msa1418340 MtrunA17_Chr8g0372111 32.653 245 160 4 105 345 419 662 9.18e-38 147
Msa1418340 MtrunA17_Chr8g0335981 28.571 266 173 7 76 337 198 450 3.36e-32 130
Msa1418340 MtrunA17_Chr7g0250221 24.468 282 185 10 72 337 162 431 1.35e-18 89.0
Msa1418340 MtrunA17_Chr4g0068631 32.237 152 83 3 104 240 88 234 6.78e-17 83.6
Msa1418340 MtrunA17_Chr1g0153181 26.434 401 217 17 93 458 109 466 3.80e-16 81.3
Msa1418340 MtrunA17_Chr1g0153181 23.048 269 188 5 104 361 32 292 4.51e-15 77.8
Msa1418340 MtrunA17_Chr6g0465751 23.810 273 184 7 104 364 25 285 6.06e-15 77.4
Msa1418340 MtrunA17_Chr6g0466501 23.443 273 185 7 104 364 25 285 7.92e-15 77.0
Msa1418340 MtrunA17_Chr6g0466501 21.550 413 274 10 93 479 102 490 7.16e-11 64.7
Msa1418340 MtrunA17_Chr4g0044541 25.676 370 219 15 106 449 124 463 1.15e-14 76.6
Msa1418340 MtrunA17_Chr4g0044541 23.704 270 185 7 104 361 34 294 1.65e-14 76.3
Msa1418340 MtrunA17_Chr3g0133651 21.408 341 225 8 106 422 95 416 1.26e-14 75.9
Msa1418340 MtrunA17_Chr0c09g0493511 23.367 398 255 12 93 464 20 393 2.86e-14 75.1
Msa1418340 MtrunA17_Chr3g0134141 23.404 235 161 5 104 327 24 250 3.32e-14 75.1
Msa1418340 MtrunA17_Chr2g0328791 20.792 303 186 7 106 362 17 311 3.47e-14 74.3
Msa1418340 MtrunA17_Chr1g0153871 21.752 331 223 8 106 412 99 417 3.87e-14 74.3
Msa1418340 MtrunA17_Chr6g0449481 29.384 211 126 8 68 267 14 212 4.00e-14 73.9
Msa1418340 MtrunA17_Chr3g0120721 31.724 145 89 5 105 241 19 161 2.32e-13 71.2
Msa1418340 MtrunA17_Chr4g0074711 22.157 343 210 10 106 416 76 393 9.34e-13 69.7
Msa1418340 MtrunA17_Chr7g0219021 34.483 87 57 0 99 185 35 121 1.05e-12 68.2
Msa1418340 MtrunA17_Chr1g0201151 23.247 271 194 5 100 361 26 291 1.77e-12 69.7
Msa1418340 MtrunA17_Chr2g0288251 21.374 262 172 9 128 362 84 338 2.00e-12 68.9
Msa1418340 MtrunA17_Chr1g0168601 32.432 148 85 3 133 269 91 234 8.38e-12 65.1
Msa1418340 MtrunA17_Chr5g0447761 27.632 152 84 5 105 234 7 154 8.44e-12 67.0
Msa1418340 MtrunA17_Chr1g0201001 35.526 76 49 0 106 181 31 106 1.29e-11 67.0
Msa1418340 MtrunA17_Chr7g0268551 26.316 171 112 5 105 265 17 183 1.91e-11 65.9
Msa1418340 MtrunA17_Chr6g0465691 21.550 413 274 10 93 479 20 408 3.52e-11 65.5
Msa1418340 MtrunA17_Chr7g0263001 44.118 68 38 0 105 172 36 103 3.99e-11 60.8
Msa1418340 MtrunA17_Chr7g0265341 25.818 275 174 9 106 356 160 428 5.15e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418340 AT4G00830.2 68.434 415 115 7 75 479 87 495 0.0 578
Msa1418340 AT4G00830.1 68.434 415 115 7 75 479 87 495 0.0 578
Msa1418340 AT4G00830.6 68.434 415 115 7 75 479 87 495 0.0 578
Msa1418340 AT4G00830.3 66.988 415 113 8 75 479 87 487 0.0 559
Msa1418340 AT4G00830.5 66.988 415 113 8 75 479 87 487 0.0 559
Msa1418340 AT4G00830.4 66.827 416 120 9 75 479 87 495 0.0 557
Msa1418340 AT3G52660.3 44.045 445 216 8 3 442 13 429 3.15e-118 355
Msa1418340 AT3G52660.1 44.045 445 216 8 3 442 13 429 3.15e-118 355
Msa1418340 AT3G52660.2 44.045 445 216 8 3 442 13 429 3.15e-118 355
Msa1418340 AT5G28390.1 38.889 198 62 6 247 442 1 141 7.23e-33 123
Msa1418340 AT2G44710.4 26.715 277 197 6 73 345 98 372 9.70e-28 117
Msa1418340 AT2G44710.2 26.715 277 197 6 73 345 183 457 1.23e-27 117
Msa1418340 AT2G44710.1 26.715 277 197 6 73 345 183 457 1.23e-27 117
Msa1418340 AT1G71770.1 27.719 285 170 8 106 362 148 424 1.59e-17 85.9
Msa1418340 AT1G71770.1 20.879 273 192 6 104 364 59 319 7.41e-13 71.2
Msa1418340 AT1G71770.2 27.719 285 170 8 106 362 148 424 1.59e-17 85.9
Msa1418340 AT1G71770.2 20.879 273 192 6 104 364 59 319 7.41e-13 71.2
Msa1418340 AT2G23350.1 26.410 390 225 17 106 458 136 500 4.55e-17 84.7
Msa1418340 AT2G23350.1 23.221 267 192 4 104 362 46 307 1.33e-14 77.0
Msa1418340 AT1G22760.1 27.778 288 166 10 106 362 138 414 1.24e-16 83.2
Msa1418340 AT1G49760.1 23.970 267 190 4 104 362 45 306 1.28e-16 83.2
Msa1418340 AT1G49760.1 26.075 372 214 15 106 449 135 473 8.20e-15 77.4
Msa1418340 AT1G49760.2 23.970 267 190 4 104 362 45 306 1.28e-16 83.2
Msa1418340 AT1G49760.2 26.075 372 214 15 106 449 135 473 8.20e-15 77.4
Msa1418340 AT4G34110.1 24.723 271 183 7 104 362 36 297 2.15e-16 82.4
Msa1418340 AT4G34110.1 27.907 387 202 18 106 458 126 469 1.63e-15 79.7
Msa1418340 AT5G19350.1 23.127 307 181 8 99 356 8 308 3.79e-15 77.8
Msa1418340 AT5G19350.2 22.112 303 185 7 99 356 8 304 6.91e-15 77.0
Msa1418340 AT2G36660.1 25.806 279 179 6 106 362 114 386 1.55e-14 76.6
Msa1418340 AT4G16280.3 31.973 147 86 4 105 240 121 264 5.55e-14 74.7
Msa1418340 AT4G16280.2 32.117 137 81 3 105 230 121 256 7.08e-14 74.7
Msa1418340 AT5G08695.1 27.273 253 164 7 106 340 229 479 7.68e-14 74.3
Msa1418340 AT4G16280.4 32.353 136 80 3 105 229 46 180 7.75e-14 74.3
Msa1418340 AT5G54900.1 21.767 317 193 10 105 384 61 359 1.04e-13 73.2
Msa1418340 AT3G13224.2 28.571 147 93 3 105 241 20 164 2.39e-13 71.6
Msa1418340 AT5G40490.1 28.655 171 110 5 105 267 43 209 2.86e-13 72.0
Msa1418340 AT2G33410.1 24.026 154 91 2 105 234 7 158 4.76e-13 71.2
Msa1418340 AT1G71800.1 33.051 118 67 2 106 223 11 116 5.00e-13 71.2
Msa1418340 AT3G13224.3 28.571 147 93 3 105 241 11 155 7.78e-13 70.1
Msa1418340 AT4G19610.1 24.710 259 157 8 106 337 296 543 1.96e-12 70.1
Msa1418340 AT1G60000.1 25.381 197 129 5 85 267 64 256 2.60e-12 67.4
Msa1418340 AT3G13224.1 29.252 147 92 4 105 241 20 164 2.65e-12 67.0
Msa1418340 AT3G16380.1 23.256 258 181 4 106 352 23 274 9.09e-12 67.8
Msa1418340 AT4G13850.4 39.726 73 44 0 104 176 35 107 4.93e-11 60.8
Msa1418340 AT3G23830.2 33.750 80 53 0 104 183 35 114 7.90e-11 60.5
Msa1418340 AT3G23830.1 33.750 80 53 0 104 183 35 114 7.90e-11 60.5
Msa1418340 AT4G13850.3 39.726 73 44 0 104 176 35 107 8.90e-11 60.5

Find 186 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTCTCTGGAAATCTTTA+TGG 0.146801 tig0024576:-46627 Msa1418340:CDS
ATCACATGGTTGTGTCTTCT+TGG 0.191780 tig0024576:-46118 Msa1418340:three_prime_UTR
AGTAGAAAATTGTGTTAATT+TGG 0.197651 tig0024576:-45885 Msa1418340:three_prime_UTR
CATGGGTCTGAAGTCTTTAT+TGG 0.210631 tig0024576:-50416 Msa1418340:CDS
GCTTCAGGGAAACGTGATTT+TGG 0.232910 tig0024576:-47084 Msa1418340:CDS
ATTTACCTCCTACCACTAAT+AGG 0.237446 tig0024576:+46153 None:intergenic
TATACATAACAAGGAATTTA+AGG 0.244355 tig0024576:-50126 Msa1418340:intron
TCCCTTCTTCTCATCAGTTC+AGG 0.274729 tig0024576:+46038 None:intergenic
GACTGGTCAGGTGAGGTCTT+TGG 0.291173 tig0024576:+49617 None:intergenic
CCGGTCATTTCTACGGGGTC+GGG 0.302448 tig0024576:+46246 None:intergenic
GGCTCTGTAGGGGCTGGATA+TGG 0.316133 tig0024576:-46606 Msa1418340:CDS
CTCAGGTATTTGACATAAAC+AGG 0.324627 tig0024576:+50748 None:intergenic
ACTGGTCAGGTGAGGTCTTT+GGG 0.328446 tig0024576:+49618 None:intergenic
CCTCGATGAGGAAAATTATA+TGG 0.332236 tig0024576:-50684 Msa1418340:CDS
CTCTTTCTCTCTCTCTTCAA+AGG 0.341629 tig0024576:-51733 Msa1418340:five_prime_UTR
ATGCCACCTGGCAAAGCTTC+AGG 0.345103 tig0024576:-47099 Msa1418340:CDS
CCAGGCGGGCGTGGAGGAGG+TGG 0.345717 tig0024576:-46214 Msa1418340:CDS
GGTGGTGTAGGGGTCCTTGA+GGG 0.352000 tig0024576:-46097 Msa1418340:three_prime_UTR
TGTGTCTTCTTGGTGGTGTA+GGG 0.368817 tig0024576:-46108 Msa1418340:three_prime_UTR
TGGTGTAGGGGTCCTTGAGG+GGG 0.372286 tig0024576:-46095 Msa1418340:three_prime_UTR
ATTGAACAGCCAATGATATA+TGG 0.372369 tig0024576:-46456 Msa1418340:intron
TTGTGTCTTCTTGGTGGTGT+AGG 0.376655 tig0024576:-46109 Msa1418340:three_prime_UTR
GAAAATGTTAAGGTAGGATT+AGG 0.377395 tig0024576:-45998 Msa1418340:three_prime_UTR
CCCGGTCATTTCTACGGGGT+CGG 0.380279 tig0024576:+46245 None:intergenic
CATTTCCCCGGTCATTTCTA+CGG 0.383712 tig0024576:+46239 None:intergenic
TGAAAGCATTGATCTCATAA+AGG 0.384681 tig0024576:-49867 Msa1418340:intron
GGTCCAGGCGGGCGTGGAGG+AGG 0.385930 tig0024576:-46217 Msa1418340:CDS
CTTCTTTCCCGTCCTCCTCA+TGG 0.386056 tig0024576:-50434 Msa1418340:CDS
TGGTGGTGTAGGGGTCCTTG+AGG 0.387491 tig0024576:-46098 Msa1418340:three_prime_UTR
ATACATGTGACGACGATGTC+AGG 0.391860 tig0024576:-50379 Msa1418340:CDS
CGTTTCCCTGAAGCTTTGCC+AGG 0.391885 tig0024576:+47093 None:intergenic
CCAGTCTGCTGCTGCTTCAC+AGG 0.392392 tig0024576:-49600 Msa1418340:intron
TCTTTATTGGCGGACTTCCT+CGG 0.402355 tig0024576:-50403 Msa1418340:CDS
CCTGGTTATGGTAACTTCTC+TGG 0.403154 tig0024576:-46639 Msa1418340:CDS
CCAGGATGTGGAAGATGGTT+AGG 0.404372 tig0024576:+46657 None:intergenic
GGAAATGGTCCAGGCGGGCG+TGG 0.407432 tig0024576:-46223 Msa1418340:CDS
TTTCTACGGGGTCGGGGACC+TGG 0.410876 tig0024576:+46253 None:intergenic
CATCTTCCACATCCTGGTTA+TGG 0.411894 tig0024576:-46651 Msa1418340:CDS
TGCTGCTGCTGCTTATCAAC+AGG 0.412652 tig0024576:-46577 Msa1418340:intron
GGAAATCTTTATGGCTCTGT+AGG 0.414546 tig0024576:-46618 Msa1418340:CDS
CCACCTCCTCCACGCCCGCC+TGG 0.417952 tig0024576:+46214 None:intergenic
TTCTTTCCCGTCCTCCTCAT+GGG 0.418722 tig0024576:-50433 Msa1418340:CDS
CGTAGAAATGACCGGGGAAA+TGG 0.418861 tig0024576:-46238 Msa1418340:CDS
GGTGTAGGGGTCCTTGAGGG+GGG 0.421376 tig0024576:-46094 Msa1418340:three_prime_UTR
ACCAAACACAGGTTATTCAT+TGG 0.421589 tig0024576:-49956 Msa1418340:CDS
CATGGACAGAGGATGAGTTT+AGG 0.422354 tig0024576:-49919 Msa1418340:CDS
CTTTATTGGCGGACTTCCTC+GGG 0.429131 tig0024576:-50402 Msa1418340:CDS
TTAATCAAAGACAGGGAGAC+TGG 0.429314 tig0024576:-50215 Msa1418340:CDS
ATCTGCATTCCTGCTGGCAT+TGG 0.429710 tig0024576:+46426 None:intergenic
GGCGGGCGTGGAGGAGGTGG+TGG 0.432818 tig0024576:-46211 Msa1418340:CDS
CATCAGTTCAGGATTGAGAA+AGG 0.438101 tig0024576:+46049 None:intergenic
GGAGGTTATGCGTACAATCC+TGG 0.438826 tig0024576:-46687 Msa1418340:CDS
CAGTCAACAGCCTGGTGTAC+AGG 0.439586 tig0024576:-46278 Msa1418340:CDS
ATTTCCCCGGTCATTTCTAC+GGG 0.439635 tig0024576:+46240 None:intergenic
AATGGTCCAGGCGGGCGTGG+AGG 0.440125 tig0024576:-46220 Msa1418340:CDS
CTTGTTATGTATATCATCAA+TGG 0.440341 tig0024576:+50136 None:intergenic
GTGGTGTAGGGGTCCTTGAG+GGG 0.442584 tig0024576:-46096 Msa1418340:three_prime_UTR
ATCCTGAACTGATGAGAAGA+AGG 0.444453 tig0024576:-46040 Msa1418340:three_prime_UTR
TTTACCTCCTACCACTAATA+GGG 0.450615 tig0024576:+46154 None:intergenic
TCTTTCTCTCTCTCTTCAAA+GGG 0.451006 tig0024576:-51732 Msa1418340:five_prime_UTR
TCCTCTTCATCAATGAGAGC+TGG 0.454460 tig0024576:+50476 None:intergenic
ACCAATGAATAACCTGTGTT+TGG 0.455471 tig0024576:+49955 None:intergenic
TGTTCAGTAGTAACATTCTC+AGG 0.458986 tig0024576:+47168 None:intergenic
GAAGATATCGACCCTATTAG+TGG 0.463195 tig0024576:-46165 Msa1418340:exon
AGATTTGCTTGTGTTGTGTT+CGG 0.464946 tig0024576:+51669 None:intergenic
GCCGTTGAGGGTGTTGGTCC+CGG 0.465967 tig0024576:-49893 Msa1418340:CDS
GCCCGCCTGGACCATTTCCC+CGG 0.468739 tig0024576:+46227 None:intergenic
ACATAGCCAATTCGACCATC+TGG 0.472814 tig0024576:+46387 None:intergenic
TGCCACCTGGCAAAGCTTCA+GGG 0.476094 tig0024576:-47098 Msa1418340:CDS
GAAATCTTTATGGCTCTGTA+GGG 0.476396 tig0024576:-46617 Msa1418340:CDS
AGATTAAATTAATCAAAGAC+AGG 0.481330 tig0024576:-50223 Msa1418340:CDS
GAGATCAATGCTTTCAACTC+CGG 0.481985 tig0024576:+49874 None:intergenic
CGACCATCTGGTAAAACCAT+TGG 0.482813 tig0024576:+46399 None:intergenic
GGAGGTGGTGGTAATGATGA+TGG 0.484593 tig0024576:-46199 Msa1418340:CDS
TCTGCACCTTCTGACATGAT+TGG 0.485195 tig0024576:+50725 None:intergenic
AGGAGCTATTTCGTCGTCAT+GGG 0.490593 tig0024576:-47140 Msa1418340:CDS
AGTTGTTATTGCGAAGCCTC+AGG 0.490927 tig0024576:-46727 Msa1418340:CDS
AAAATGTGAAGAAAATGTTA+AGG 0.492398 tig0024576:-46008 Msa1418340:three_prime_UTR
GAAGCAGCAGCAGACTGGTC+AGG 0.493493 tig0024576:+49605 None:intergenic
CTTTATGGCTCTGTAGGGGC+TGG 0.493827 tig0024576:-46612 Msa1418340:CDS
AAGGAGCTATTTCGTCGTCA+TGG 0.495504 tig0024576:-47141 Msa1418340:CDS
CGGTCATTTCTACGGGGTCG+GGG 0.495783 tig0024576:+46247 None:intergenic
CAATAACAACTTCAAGAGCT+TGG 0.499467 tig0024576:+46739 None:intergenic
AGGAAAGCCGTTGAGGGTGT+TGG 0.501756 tig0024576:-49899 Msa1418340:CDS
GGAAAATTATATGGAAGAGA+TGG 0.503412 tig0024576:-50675 Msa1418340:CDS
AACAAAGGAGGTGGCACAGA+AGG 0.503949 tig0024576:-50159 Msa1418340:CDS
GAGGAGACAGCAGCAGAGGC+TGG 0.509710 tig0024576:-50563 Msa1418340:CDS
TGTTACTACTGAACAACTAA+AGG 0.511831 tig0024576:-47160 Msa1418340:CDS
GGGTCTGAAGTCTTTATTGG+CGG 0.513723 tig0024576:-50413 Msa1418340:CDS
ACCAGCTCTCATTGATGAAG+AGG 0.515995 tig0024576:-50477 Msa1418340:CDS
CAGGGAATTGTGTGAGCCCA+TGG 0.518448 tig0024576:-50360 Msa1418340:CDS
CCTTCTGACATGATTGGCTC+AGG 0.518642 tig0024576:+50731 None:intergenic
GGAACCATCTGCATTCCTGC+TGG 0.518900 tig0024576:+46420 None:intergenic
TGTGAAGAAAATGTTAAGGT+AGG 0.519298 tig0024576:-46004 Msa1418340:three_prime_UTR
AGATCAATGCTTTCAACTCC+GGG 0.521590 tig0024576:+49875 None:intergenic
GGACCCCTACCATATATCAT+TGG 0.523074 tig0024576:+46447 None:intergenic
TCTGACCAAAACACAAAATG+AGG 0.523169 tig0024576:+51789 None:intergenic
CAGCCTGGTGTACAGGTGCC+AGG 0.525138 tig0024576:-46271 Msa1418340:CDS
TTCAGACCCATGAGGAGGAC+GGG 0.525429 tig0024576:+50427 None:intergenic
CCAGAGAAGTTACCATAACC+AGG 0.530505 tig0024576:+46639 None:intergenic
ACAAAAGTGGTCATGCCACC+TGG 0.531745 tig0024576:-47111 Msa1418340:CDS
AAGCAAGGGTTATGCATTCG+TGG 0.533835 tig0024576:-50189 Msa1418340:CDS
ACATGGTTGTGTCTTCTTGG+TGG 0.535839 tig0024576:-46115 Msa1418340:three_prime_UTR
CATAACCAGGATGTGGAAGA+TGG 0.536285 tig0024576:+46652 None:intergenic
CCCGACCCCGTAGAAATGAC+CGG 0.536467 tig0024576:-46246 Msa1418340:CDS
CAGGGAGACTGGAGAAAGCA+AGG 0.536934 tig0024576:-50204 Msa1418340:CDS
CCTGTGAAGCAGCAGCAGAC+TGG 0.538416 tig0024576:+49600 None:intergenic
AATAGAAATATCACTGGTCC+TGG 0.539313 tig0024576:+45974 None:intergenic
CCTAACCATCTTCCACATCC+TGG 0.539820 tig0024576:-46657 Msa1418340:CDS
GTGTCTTCTTGGTGGTGTAG+GGG 0.541281 tig0024576:-46107 Msa1418340:three_prime_UTR
CCGACCCCGTAGAAATGACC+GGG 0.542279 tig0024576:-46245 Msa1418340:CDS
GCTCATCTTCTTCAGCGCCA+TGG 0.544023 tig0024576:+50504 None:intergenic
GACCTCAACAATATCACCCA+TGG 0.547750 tig0024576:+50343 None:intergenic
TGTTGAAGAACACGAATATG+AGG 0.551736 tig0024576:-50582 Msa1418340:CDS
ATAGATGACGATGGAGTGGA+TGG 0.552315 tig0024576:-50632 Msa1418340:CDS
GAGTTTAGGAAAGCCGTTGA+GGG 0.552705 tig0024576:-49905 Msa1418340:CDS
TTGTACGCATAACCTCCATC+AGG 0.553819 tig0024576:+46693 None:intergenic
AATGACCGGGGAAATGGTCC+AGG 0.555766 tig0024576:-46232 Msa1418340:CDS
ACCGGGGAAATGGTCCAGGC+GGG 0.557494 tig0024576:-46228 Msa1418340:CDS
AAGTTACCATAACCAGGATG+TGG 0.557504 tig0024576:+46645 None:intergenic
ACAGCCAATGATATATGGTA+GGG 0.557802 tig0024576:-46451 Msa1418340:intron
ACGGAGAAATATGAAATTGA+CGG 0.559927 tig0024576:-47012 Msa1418340:intron
GGTAGGGGTCCAATGCCAGC+AGG 0.561717 tig0024576:-46435 Msa1418340:CDS
GGACCTGGCACCTGTACACC+AGG 0.562206 tig0024576:+46268 None:intergenic
ATGTTCTGCAGTCAACAGCC+TGG 0.562438 tig0024576:-46286 Msa1418340:intron
AGCAAGGGTTATGCATTCGT+GGG 0.564602 tig0024576:-50188 Msa1418340:CDS
CATTGATGATATACATAACA+AGG 0.565385 tig0024576:-50135 Msa1418340:CDS
AAATGATCGGTGAAGATGCA+AGG 0.567751 tig0024576:-51848 None:intergenic
ATGCAAGGGTGCAAGTGAGA+AGG 0.569372 tig0024576:-51833 Msa1418340:five_prime_UTR
GATGTGGAAGATGGTTAGGA+TGG 0.573494 tig0024576:+46661 None:intergenic
AGGAATGCAGATGGTTCCAA+TGG 0.574457 tig0024576:-46415 Msa1418340:CDS
CTTCAGACCCATGAGGAGGA+CGG 0.579525 tig0024576:+50426 None:intergenic
TGCAAGTGAGAAGGAGCGCA+TGG 0.582204 tig0024576:-51824 Msa1418340:five_prime_UTR
AGCAGCAGACTGGTCAGGTG+AGG 0.583616 tig0024576:+49610 None:intergenic
TAACTTAATAGAAATATCAC+TGG 0.588772 tig0024576:+45968 None:intergenic
AGATGGTTAGGATGGAGTCC+AGG 0.592860 tig0024576:+46669 None:intergenic
AACAGCCAATGATATATGGT+AGG 0.595791 tig0024576:-46452 Msa1418340:intron
GTATCACACCGACTGTCACA+TGG 0.596946 tig0024576:-49646 Msa1418340:CDS
TCCTGAACTGATGAGAAGAA+GGG 0.597276 tig0024576:-46039 Msa1418340:three_prime_UTR
GGGTTATAAAACAAAGGAGG+TGG 0.597805 tig0024576:-50168 Msa1418340:CDS
TCCGGGACCAACACCCTCAA+CGG 0.598148 tig0024576:+49892 None:intergenic
TTCCCTGAAGCTTTGCCAGG+TGG 0.598628 tig0024576:+47096 None:intergenic
CAAAATCAAAGCAGAAATCG+TGG 0.602168 tig0024576:-49752 Msa1418340:CDS
AGTGTGGGTTTCAAGCTAGA+TGG 0.603926 tig0024576:-49668 Msa1418340:CDS
GGGTCAGCCCATGTGACAGT+CGG 0.604999 tig0024576:+49638 None:intergenic
ACCTCAACAATATCACCCAT+GGG 0.606317 tig0024576:+50344 None:intergenic
CGACAAAAGATGTCAAGTGT+GGG 0.606384 tig0024576:-49683 Msa1418340:CDS
TACATGTGACGACGATGTCA+GGG 0.615488 tig0024576:-50378 Msa1418340:CDS
AAATCTTTATGGCTCTGTAG+GGG 0.616942 tig0024576:-46616 Msa1418340:CDS
ACGACAAAAGATGTCAAGTG+TGG 0.618953 tig0024576:-49684 Msa1418340:CDS
ATATCGACCCTATTAGTGGT+AGG 0.620077 tig0024576:-46161 Msa1418340:exon
TCATGGGGAAGTAACAAAAG+TGG 0.622137 tig0024576:-47124 Msa1418340:CDS
ACAGATAGATGACGATGGAG+TGG 0.623025 tig0024576:-50636 Msa1418340:CDS
GTTTCATTCATTATGCTGAG+AGG 0.624418 tig0024576:-47062 Msa1418340:CDS
AGGGAGACTGGAGAAAGCAA+GGG 0.624475 tig0024576:-50203 Msa1418340:CDS
CCTGAGCCAATCATGTCAGA+AGG 0.625578 tig0024576:-50731 Msa1418340:exon
ATATGAGGAGACAGCAGCAG+AGG 0.629414 tig0024576:-50567 Msa1418340:CDS
GATTAAATTAATCAAAGACA+GGG 0.629935 tig0024576:-50222 Msa1418340:CDS
ATTCGTGGGTTATAAAACAA+AGG 0.634249 tig0024576:-50174 Msa1418340:CDS
CAGCCAATGATATATGGTAG+GGG 0.638077 tig0024576:-46450 Msa1418340:CDS
TCGACCCTATTAGTGGTAGG+AGG 0.638674 tig0024576:-46158 Msa1418340:exon
GATGACGATGGAGTGGATGG+AGG 0.642481 tig0024576:-50629 Msa1418340:CDS
TGAGTTTAGGAAAGCCGTTG+AGG 0.642754 tig0024576:-49906 Msa1418340:CDS
ATTGAAAGCTGTAAAAGAGA+CGG 0.643889 tig0024576:-47031 Msa1418340:CDS
AATGCCAGCAGGAATGCAGA+TGG 0.647935 tig0024576:-46424 Msa1418340:CDS
GCCCATGGGTGATATTGTTG+AGG 0.648762 tig0024576:-50345 Msa1418340:intron
GACCGGGGAAATGGTCCAGG+CGG 0.648958 tig0024576:-46229 Msa1418340:CDS
AAAATCAAAGCAGAAATCGT+GGG 0.650895 tig0024576:-49751 Msa1418340:CDS
AGAGATGGACGATGATGTTG+AGG 0.652385 tig0024576:-50660 Msa1418340:CDS
AATGATCGGTGAAGATGCAA+GGG 0.653096 tig0024576:-51847 None:intergenic
CGTGGGTTATAAAACAAAGG+AGG 0.655328 tig0024576:-50171 Msa1418340:CDS
GGCGAAGATGAAAATGCTGA+AGG 0.655624 tig0024576:-50608 Msa1418340:CDS
AGGGAATTGTGTGAGCCCAT+GGG 0.660365 tig0024576:-50359 Msa1418340:CDS
ATGCAATGTGGCTCATCACA+TGG 0.661262 tig0024576:-46132 Msa1418340:three_prime_UTR
CTGACCAAAACACAAAATGA+GGG 0.661882 tig0024576:+51790 None:intergenic
GGAGCTATTTCGTCGTCATG+GGG 0.670970 tig0024576:-47139 Msa1418340:CDS
TGCTGTCTGAAACCAAACAC+AGG 0.677613 tig0024576:-49967 Msa1418340:CDS
TATCACACCGACTGTCACAT+GGG 0.679483 tig0024576:-49645 Msa1418340:CDS
TCGTCGTCACATGTATCCCG+AGG 0.686914 tig0024576:+50386 None:intergenic
GTTAAGGTAGGATTAGGACC+AGG 0.694530 tig0024576:-45992 Msa1418340:three_prime_UTR
AAGACTTCAGACCCATGAGG+AGG 0.707032 tig0024576:+50422 None:intergenic
TGAGCGTGTTGACCTCGATG+AGG 0.709115 tig0024576:-50696 Msa1418340:CDS
GAGGAACAGATAGATGACGA+TGG 0.727620 tig0024576:-50641 Msa1418340:CDS
GGTAGGAGGTAAATGCAATG+TGG 0.735908 tig0024576:-46144 Msa1418340:three_prime_UTR
TTTCCCCGGTCATTTCTACG+GGG 0.740148 tig0024576:+46241 None:intergenic
ATAAAGACTTCAGACCCATG+AGG 0.754876 tig0024576:+50419 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAT+TGG + tig0024576:48709-48728 None:intergenic 0.0%
!! AAAACATATATATACATATA+TGG + tig0024576:46760-46779 None:intergenic 10.0%
!!! TTATATCAATAATCTTATTT+TGG - tig0024576:47509-47528 Msa1418340:intron 10.0%
!! TTAAACAATTTAATATAAAC+TGG + tig0024576:47741-47760 None:intergenic 10.0%
!! TTTATTTATTAGTACAAAAA+GGG + tig0024576:48511-48530 None:intergenic 10.0%
!! ATTTATTTATTAGTACAAAA+AGG + tig0024576:48512-48531 None:intergenic 10.0%
!! GTACTAATAAATAAATAAAT+AGG - tig0024576:48516-48535 Msa1418340:intron 10.0%
!! AATATTAAAATTATTGTCAA+GGG + tig0024576:49428-49447 None:intergenic 10.0%
!! AATATTAAAATTATTGTCAA+GGG + tig0024576:49428-49447 None:intergenic 10.0%
!! GTATTATATCAAATAAAATA+AGG + tig0024576:51234-51253 None:intergenic 10.0%
!! AAAGTTATTCAATAAGATTT+AGG + tig0024576:46557-46576 None:intergenic 15.0%
!!! AACAATCTTTTCTTATATTT+AGG - tig0024576:46633-46652 Msa1418340:CDS 15.0%
!! CATATAATCATCAAATTTAT+GGG - tig0024576:48381-48400 Msa1418340:intron 15.0%
!!! CTCATTTTATATTTATGTAT+GGG - tig0024576:48750-48769 Msa1418340:intron 15.0%
!!! ATGATATAATTTTGTTTCTT+TGG - tig0024576:49266-49285 Msa1418340:intron 15.0%
!! GAATATTAAAATTATTGTCA+AGG + tig0024576:49429-49448 None:intergenic 15.0%
!! GAATATTAAAATTATTGTCA+AGG + tig0024576:49429-49448 None:intergenic 15.0%
!! AAATATAATAATCAATGAGA+AGG + tig0024576:49891-49910 None:intergenic 15.0%
!!! TTCATTGTTTTTACTAAATA+TGG - tig0024576:50773-50792 Msa1418340:intron 15.0%
!!! TTTGATTTGATTTGATTTGA+TGG + tig0024576:46025-46044 None:intergenic 20.0%
!! TAAAAAGAAATTTGAAAGAG+AGG + tig0024576:46286-46305 None:intergenic 20.0%
!! ATTGAATAACTTTATGTATC+TGG - tig0024576:46564-46583 Msa1418340:intron 20.0%
!!! TAAGAAAAGATTGTTTTTGT+AGG + tig0024576:46628-46647 None:intergenic 20.0%
!! AGATTAAATTAATCAAAGAC+AGG - tig0024576:47335-47354 Msa1418340:intron 20.0%
!! GATTAAATTAATCAAAGACA+GGG - tig0024576:47336-47355 Msa1418340:intron 20.0%
!! TATACATAACAAGGAATTTA+AGG - tig0024576:47432-47451 Msa1418340:intron 20.0%
!! CTTATTCATGATAATTACAT+TGG - tig0024576:47478-47497 Msa1418340:intron 20.0%
!!! TTTTGGTGATTACTTTTAAT+CGG - tig0024576:47526-47545 Msa1418340:intron 20.0%
!!! TTAACATTTTTCATGATATC+AGG - tig0024576:47550-47569 Msa1418340:intron 20.0%
!!! TAACATTTTTCATGATATCA+GGG - tig0024576:47551-47570 Msa1418340:intron 20.0%
!! AACAATTTAATATAAACTGG+TGG + tig0024576:47738-47757 None:intergenic 20.0%
!! GATATTTATTATTGTGACTT+AGG - tig0024576:48227-48246 Msa1418340:intron 20.0%
!! AATATGTAGATAAAAATCAG+AGG + tig0024576:48260-48279 None:intergenic 20.0%
!! GCATATAATCATCAAATTTA+TGG - tig0024576:48380-48399 Msa1418340:intron 20.0%
!!! TATGGGTTTTAAATATAAGA+TGG - tig0024576:48398-48417 Msa1418340:intron 20.0%
!! AATAAATAAATAGGGAATTC+TGG - tig0024576:48525-48544 Msa1418340:intron 20.0%
!! GATAATCTAACATTAGAAAA+AGG - tig0024576:48566-48585 Msa1418340:intron 20.0%
!! CCATACATAAATATAAAATG+AGG + tig0024576:48752-48771 None:intergenic 20.0%
!!! CCTCATTTTATATTTATGTA+TGG - tig0024576:48749-48768 Msa1418340:intron 20.0%
!!! ATATAATTTTGTTTCTTTGG+TGG - tig0024576:49269-49288 Msa1418340:intron 20.0%
!!! TCTCCTTTTTTTATTTTTTG+AGG - tig0024576:49380-49399 Msa1418340:intron 20.0%
!!! CTCCTTTTTTTATTTTTTGA+GGG - tig0024576:49381-49400 Msa1418340:intron 20.0%
!! TTCCCTCAAAAAATAAAAAA+AGG + tig0024576:49386-49405 None:intergenic 20.0%
!! GAAATTAGAAATATTATTGG+TGG + tig0024576:49451-49470 None:intergenic 20.0%
!! TGGGAAATTAGAAATATTAT+TGG + tig0024576:49454-49473 None:intergenic 20.0%
!! GAAATTAGAAATATTATTGG+TGG + tig0024576:49451-49470 None:intergenic 20.0%
!! GTGGAAATTAGAAATATTAT+TGG + tig0024576:49705-49724 None:intergenic 20.0%
!! ATTTAATATTGACAATCTGA+AGG + tig0024576:49824-49843 None:intergenic 20.0%
!! ACTAGTAAATTGCAATAATT+GGG - tig0024576:50152-50171 Msa1418340:CDS 20.0%
!!! TTCGTATTTTACATGTTTTT+GGG - tig0024576:50273-50292 Msa1418340:intron 20.0%
!!! CTTTTGTTTTTGTTATTTTC+AGG - tig0024576:50341-50360 Msa1418340:intron 20.0%
!! AGTGATGAAAAATAACAATA+TGG - tig0024576:50664-50683 Msa1418340:CDS 20.0%
!! AAAATGTGAAGAAAATGTTA+AGG - tig0024576:51550-51569 Msa1418340:intron 20.0%
!! TAACTTAATAGAAATATCAC+TGG + tig0024576:51593-51612 None:intergenic 20.0%
!!! AAATTAACACAATTTTCTAC+TGG + tig0024576:51674-51693 None:intergenic 20.0%
!! AGTAGAAAATTGTGTTAATT+TGG - tig0024576:51673-51692 Msa1418340:five_prime_UTR 20.0%
! CGAAGAAATGAGATAAAAAA+GGG + tig0024576:46076-46095 None:intergenic 25.0%
!!! CCTTTTTTATCTCATTTCTT+CGG - tig0024576:46074-46093 Msa1418340:three_prime_UTR 25.0%
!!! CTTTTTTATCTCATTTCTTC+GGG - tig0024576:46075-46094 Msa1418340:three_prime_UTR 25.0%
!!! TTTTTTATCTCATTTCTTCG+GGG - tig0024576:46076-46095 Msa1418340:three_prime_UTR 25.0%
! ATAGTTAGACTTAGAAGAAT+TGG + tig0024576:46133-46152 None:intergenic 25.0%
! CCAAAAAAGATAGAAGAAAT+TGG + tig0024576:46196-46215 None:intergenic 25.0%
!!! CCAATTTCTTCTATCTTTTT+TGG - tig0024576:46193-46212 Msa1418340:CDS 25.0%
!!! TTCTTCTATCTTTTTTGGTA+TGG - tig0024576:46198-46217 Msa1418340:CDS 25.0%
!! TTTTATAGATTTCCATCACA+TGG - tig0024576:46301-46320 Msa1418340:intron 25.0%
! AGAAAGGTTCATTTAAACAA+CGG + tig0024576:46333-46352 None:intergenic 25.0%
!!! TAGTTAGGGTATTTCATTTT+AGG - tig0024576:46359-46378 Msa1418340:intron 25.0%
!!! AGTTAGGGTATTTCATTTTA+GGG - tig0024576:46360-46379 Msa1418340:intron 25.0%
!!! TCATTTTAGGGTTTTACTTA+TGG - tig0024576:46372-46391 Msa1418340:intron 25.0%
!! AGTTAGCGAATTTTAAACAA+CGG + tig0024576:46430-46449 None:intergenic 25.0%
! AAAGGTTGAGAAATAGATAA+CGG + tig0024576:46472-46491 None:intergenic 25.0%
! CAAAATATAGTGAAATTACC+CGG + tig0024576:46521-46540 None:intergenic 25.0%
!!! TCTTTTCTTATATTTAGGAC+CGG - tig0024576:46638-46657 Msa1418340:CDS 25.0%
! GAATCTGTATTGTTAAATAG+CGG + tig0024576:46738-46757 None:intergenic 25.0%
!! CTTGTTATGTATATCATCAA+TGG + tig0024576:47425-47444 None:intergenic 25.0%
!! CATTGATGATATACATAACA+AGG - tig0024576:47423-47442 Msa1418340:intron 25.0%
! CTATAACAGACAAAAATGTT+TGG + tig0024576:47780-47799 None:intergenic 25.0%
!! CAAACATTTTTGTCTGTTAT+AGG - tig0024576:47778-47797 Msa1418340:intron 25.0%
! ATGTTTGATTGAGCATTTAT+AGG - tig0024576:48058-48077 Msa1418340:intron 25.0%
!! TTTTCCATAAAAATGATGAG+AGG - tig0024576:49011-49030 Msa1418340:intron 25.0%
! TTTCCATAAAAATGATGAGA+GGG - tig0024576:49012-49031 Msa1418340:intron 25.0%
! CAAAAATCGTAAATCAGATT+CGG + tig0024576:49046-49065 None:intergenic 25.0%
! ATAGAAAAATTGAGAATCGT+GGG + tig0024576:49317-49336 None:intergenic 25.0%
! AATAGAAAAATTGAGAATCG+TGG + tig0024576:49318-49337 None:intergenic 25.0%
! AATTATTGTCAAGGGAATAA+AGG + tig0024576:49420-49439 None:intergenic 25.0%
! TATAGAAAAATTGTGAATCG+CGG + tig0024576:49505-49524 None:intergenic 25.0%
! ACCTTAAACTAGGAATAATT+GGG + tig0024576:49600-49619 None:intergenic 25.0%
! AACCTTAAACTAGGAATAAT+TGG + tig0024576:49601-49620 None:intergenic 25.0%
! AAATGAAAGAACCTTAAACT+AGG + tig0024576:49610-49629 None:intergenic 25.0%
! AATTATTGTCAAGGGAATAA+AGG + tig0024576:49420-49439 None:intergenic 25.0%
!!! TCTATTCACTTTTGACTTAA+TGG - tig0024576:49757-49776 Msa1418340:CDS 25.0%
! AAAATTCATTGAACAGGTAA+AGG + tig0024576:50075-50094 None:intergenic 25.0%
! GAAACTAAAATTCATTGAAC+AGG + tig0024576:50081-50100 None:intergenic 25.0%
! GACTAGTAAATTGCAATAAT+TGG - tig0024576:50151-50170 Msa1418340:CDS 25.0%
! CATAGAATGTGAATTTAATG+AGG - tig0024576:50248-50267 Msa1418340:intron 25.0%
!! GTTCGTATTTTACATGTTTT+TGG - tig0024576:50272-50291 Msa1418340:intron 25.0%
!!! TCGTATTTTACATGTTTTTG+GGG - tig0024576:50274-50293 Msa1418340:intron 25.0%
!!! TTATTTTTCATCACTCAAAC+AGG + tig0024576:50659-50678 None:intergenic 25.0%
! AACAATGAATATATTCGAAG+AGG + tig0024576:50762-50781 None:intergenic 25.0%
! CATTACAAGTAGAAAAAGTT+GGG + tig0024576:51630-51649 None:intergenic 25.0%
!! GTGTTTTTGTGAATTGAGAA+GGG + tig0024576:45920-45939 None:intergenic 30.0%
!! AGTGTTTTTGTGAATTGAGA+AGG + tig0024576:45921-45940 None:intergenic 30.0%
TTCTCAATTCACAAAAACAC+TGG - tig0024576:45920-45939 Msa1418340:three_prime_UTR 30.0%
CCGAAGAAATGAGATAAAAA+AGG + tig0024576:46077-46096 None:intergenic 30.0%
! TTTTTATCTCATTTCTTCGG+GGG - tig0024576:46077-46096 Msa1418340:three_prime_UTR 30.0%
! CTGAAAAGTGTGAATGAATA+CGG + tig0024576:46247-46266 None:intergenic 30.0%
GAAAGGTTCATTTAAACAAC+GGG + tig0024576:46332-46351 None:intergenic 30.0%
! AACCTTTCTTCTAGTTAGTT+AGG - tig0024576:46344-46363 Msa1418340:intron 30.0%
! ACCTTTCTTCTAGTTAGTTA+GGG - tig0024576:46345-46364 Msa1418340:intron 30.0%
!! TTTAGGGTTTTACTTATGGA+TGG - tig0024576:46376-46395 Msa1418340:intron 30.0%
! GTTAGCGAATTTTAAACAAC+GGG + tig0024576:46429-46448 None:intergenic 30.0%
ATAGCAGAATTGGAACAAAT+CGG + tig0024576:46697-46716 None:intergenic 30.0%
GGAAAATTATATGGAAGAGA+TGG - tig0024576:46883-46902 Msa1418340:intron 30.0%
! AAACTTTTCATTTCAGCGTA+GGG - tig0024576:47268-47287 Msa1418340:intron 30.0%
GTTGGGATTATTAACAAGTT+TGG - tig0024576:47296-47315 Msa1418340:intron 30.0%
! ATTCGTGGGTTATAAAACAA+AGG - tig0024576:47384-47403 Msa1418340:intron 30.0%
! TTGGTAACATTCCAAAAACA+TGG - tig0024576:47621-47640 Msa1418340:intron 30.0%
!! TGAAAGCATTGATCTCATAA+AGG - tig0024576:47691-47710 Msa1418340:intron 30.0%
CATTGATCTCATAAAGGTTT+GGG - tig0024576:47697-47716 Msa1418340:intron 30.0%
!! GATTTCTGCTTTGATTTTGA+GGG + tig0024576:47805-47824 None:intergenic 30.0%
AAAATCAAAGCAGAAATCGT+GGG - tig0024576:47807-47826 Msa1418340:intron 30.0%
TCAAACATTTGATGCAATGT+AGG + tig0024576:48046-48065 None:intergenic 30.0%
GAAAAAAGAAGAAAAAGAGC+AGG + tig0024576:48103-48122 None:intergenic 30.0%
TTGCAAATACCAATCAGTTT+AGG + tig0024576:48142-48161 None:intergenic 30.0%
AAATATCTCAAGCAGAAAAC+AGG + tig0024576:48214-48233 None:intergenic 30.0%
AGTCGTCAATTTGAGTAAAT+CGG - tig0024576:48282-48301 Msa1418340:intron 30.0%
ATTTGAGTAAATCGGAGATA+AGG - tig0024576:48290-48309 Msa1418340:intron 30.0%
! TAATGGATGAAAACTTGAAG+TGG - tig0024576:48638-48657 Msa1418340:intron 30.0%
AATGGATGAAAACTTGAAGT+GGG - tig0024576:48639-48658 Msa1418340:intron 30.0%
! CGAATCTGATTTACGATTTT+TGG - tig0024576:49044-49063 Msa1418340:intron 30.0%
AAGGAGAAAGAAATCTGATT+AGG + tig0024576:49367-49386 None:intergenic 30.0%
AACACGGATCGTAATATTAT+TGG + tig0024576:49477-49496 None:intergenic 30.0%
ATAGAAAAATTGTGAATCGC+GGG + tig0024576:49504-49523 None:intergenic 30.0%
AATGAATTGACATTAGCACA+TGG + tig0024576:49800-49819 None:intergenic 30.0%
AGAACAGGCAAAAAACAAAA+GGG + tig0024576:49868-49887 None:intergenic 30.0%
TATTTCCTTGTTAACTGATG+CGG - tig0024576:49906-49925 Msa1418340:CDS 30.0%
ATGCTTTCGAATTTCAACAT+GGG + tig0024576:50228-50247 None:intergenic 30.0%
TGTTACTACTGAACAACTAA+AGG - tig0024576:50398-50417 Msa1418340:CDS 30.0%
ATTGAAAGCTGTAAAAGAGA+CGG - tig0024576:50527-50546 Msa1418340:CDS 30.0%
ACGGAGAAATATGAAATTGA+CGG - tig0024576:50546-50565 Msa1418340:CDS 30.0%
AAAAAACAGACAAACTTGCA+GGG + tig0024576:50598-50617 None:intergenic 30.0%
!!! TCTGTTTTTTCTTTCTTCGA+CGG - tig0024576:50608-50627 Msa1418340:CDS 30.0%
! TTTTTATGTCTTTGAACTGC+AGG - tig0024576:50796-50815 Msa1418340:intron 30.0%
! AACTTCTCTGGAAATCTTTA+TGG - tig0024576:50931-50950 Msa1418340:intron 30.0%
TCTAATATGTTTGCATCTTG+TGG - tig0024576:51066-51085 Msa1418340:intron 30.0%
CTAATATGTTTGCATCTTGT+GGG - tig0024576:51067-51086 Msa1418340:intron 30.0%
ATTGAACAGCCAATGATATA+TGG - tig0024576:51102-51121 Msa1418340:intron 30.0%
!! CATGAGTTTTAACAACTTAC+AGG + tig0024576:51197-51216 None:intergenic 30.0%
GTTGTTAAAACTCATGTACA+TGG - tig0024576:51201-51220 Msa1418340:intron 30.0%
TGTGAAGAAAATGTTAAGGT+AGG - tig0024576:51554-51573 Msa1418340:intron 30.0%
GAAAATGTTAAGGTAGGATT+AGG - tig0024576:51560-51579 Msa1418340:intron 30.0%
GCATTACAAGTAGAAAAAGT+TGG + tig0024576:51631-51650 None:intergenic 30.0%
! CTTTTTCTACTTGTAATGCT+TGG - tig0024576:51632-51651 Msa1418340:intron 30.0%
AAAAATGAGCGACAAAAACA+TGG + tig0024576:51713-51732 None:intergenic 30.0%
CTGACCAAAACACAAAATGA+GGG + tig0024576:45771-45790 None:intergenic 35.0%
TCTGACCAAAACACAAAATG+AGG + tig0024576:45772-45791 None:intergenic 35.0%
TCTTTCTCTCTCTCTTCAAA+GGG - tig0024576:45826-45845 Msa1418340:three_prime_UTR 35.0%
! AGATTTGCTTGTGTTGTGTT+CGG + tig0024576:45892-45911 None:intergenic 35.0%
TCTTTCACTATCAACTCCTT+TGG - tig0024576:46105-46124 Msa1418340:three_prime_UTR 35.0%
CTTAGAAGAATTGGATCCAA+AGG + tig0024576:46124-46143 None:intergenic 35.0%
! AAAAGTGTGAATGAATACGG+AGG + tig0024576:46244-46263 None:intergenic 35.0%
ACCCTAACTAACTAGAAGAA+AGG + tig0024576:46349-46368 None:intergenic 35.0%
TAAACAACGGGCAATTGATA+GGG + tig0024576:46417-46436 None:intergenic 35.0%
TTAAACAACGGGCAATTGAT+AGG + tig0024576:46418-46437 None:intergenic 35.0%
! TTGAGAAATAGATAACGGTG+GGG + tig0024576:46467-46486 None:intergenic 35.0%
! GTTGAGAAATAGATAACGGT+GGG + tig0024576:46468-46487 None:intergenic 35.0%
TATAGTGAAATTACCCGGTA+TGG + tig0024576:46516-46535 None:intergenic 35.0%
CAATAAGATTTAGGAGCAGA+GGG + tig0024576:46548-46567 None:intergenic 35.0%
TCAATAAGATTTAGGAGCAG+AGG + tig0024576:46549-46568 None:intergenic 35.0%
! TTTCTTATATTTAGGACCGG+AGG - tig0024576:46641-46660 Msa1418340:CDS 35.0%
! TTCTTATATTTAGGACCGGA+GGG - tig0024576:46642-46661 Msa1418340:CDS 35.0%
!! TTGTTAAATAGCGGATACAG+CGG + tig0024576:46729-46748 None:intergenic 35.0%
CTCAGGTATTTGACATAAAC+AGG + tig0024576:46813-46832 None:intergenic 35.0%
! CCATATAATTTTCCTCATCG+AGG + tig0024576:46877-46896 None:intergenic 35.0%
CCTCGATGAGGAAAATTATA+TGG - tig0024576:46874-46893 Msa1418340:intron 35.0%
TGTTGAAGAACACGAATATG+AGG - tig0024576:46976-46995 Msa1418340:intron 35.0%
!!! TTTTTTCTCCTTCGGGAAAT+TGG + tig0024576:47030-47049 None:intergenic 35.0%
!!! ATGGTCACTTTTTTCTCCTT+CGG + tig0024576:47038-47057 None:intergenic 35.0%
! GAAACTTTTCATTTCAGCGT+AGG - tig0024576:47267-47286 Msa1418340:intron 35.0%
GATATCAGGGAAAAACTTTG+AGG - tig0024576:47564-47583 Msa1418340:intron 35.0%
ACCAAACACAGGTTATTCAT+TGG - tig0024576:47602-47621 Msa1418340:intron 35.0%
ACCAATGAATAACCTGTGTT+TGG + tig0024576:47606-47625 None:intergenic 35.0%
! GCATTGATCTCATAAAGGTT+TGG - tig0024576:47696-47715 Msa1418340:intron 35.0%
!! CGATTTCTGCTTTGATTTTG+AGG + tig0024576:47806-47825 None:intergenic 35.0%
CAAAATCAAAGCAGAAATCG+TGG - tig0024576:47806-47825 Msa1418340:intron 35.0%
! TGTGATTTTCTGGATGAATG+TGG - tig0024576:47983-48002 Msa1418340:intron 35.0%
GAAGAAAAAGAGCAGGAAAA+GGG + tig0024576:48096-48115 None:intergenic 35.0%
AGAAGAAAAAGAGCAGGAAA+AGG + tig0024576:48097-48116 None:intergenic 35.0%
GTAGATAAAAATCAGAGGCA+TGG + tig0024576:48255-48274 None:intergenic 35.0%
TTGTGATATGCCTTCACATA+GGG + tig0024576:48325-48344 None:intergenic 35.0%
GCATATCACAAGTTTATGTG+AGG - tig0024576:48334-48353 Msa1418340:intron 35.0%
!!! GACCTTTTGAAGTATGACTA+TGG - tig0024576:48436-48455 Msa1418340:intron 35.0%
CACCATAGTCATACTTCAAA+AGG + tig0024576:48441-48460 None:intergenic 35.0%
TTACAATAACCTGTCGATGT+AGG - tig0024576:48607-48626 Msa1418340:intron 35.0%
!!! TTGTTTTGAACCTTTTGACC+TGG - tig0024576:48871-48890 Msa1418340:intron 35.0%
AAAAAAACGAGAGCCACATT+CGG + tig0024576:48994-49013 None:intergenic 35.0%
!! CTTCCCTCTCATCATTTTTA+TGG + tig0024576:49018-49037 None:intergenic 35.0%
CGGATCGTAATATTATTGGT+GGG + tig0024576:49473-49492 None:intergenic 35.0%
ACGGATCGTAATATTATTGG+TGG + tig0024576:49474-49493 None:intergenic 35.0%
TTTCTATACCCAAGATCCTT+AGG - tig0024576:49517-49536 Msa1418340:intron 35.0%
AGATTTCACCTAAGGATCTT+GGG + tig0024576:49528-49547 None:intergenic 35.0%
ATGAGGGAAAAAATAGAGCA+TGG + tig0024576:49563-49582 None:intergenic 35.0%
TAAACTAGGAATAATTGGGC+AGG + tig0024576:49596-49615 None:intergenic 35.0%
GCCCAATTATTCCTAGTTTA+AGG - tig0024576:49596-49615 Msa1418340:intron 35.0%
AAGGAGAAAGAAATCTGACT+AGG + tig0024576:49652-49671 None:intergenic 35.0%
GTCAAAAGTGAATAGAAGAG+AGG + tig0024576:49753-49772 None:intergenic 35.0%
GAGAACAGGCAAAAAACAAA+AGG + tig0024576:49869-49888 None:intergenic 35.0%
TAATCAATGAGAAGGAGAAC+AGG + tig0024576:49883-49902 None:intergenic 35.0%
ATGCTAGAATCTATCACATG+CGG - tig0024576:50014-50033 Msa1418340:intron 35.0%
CAGATAAAATTGCGAGACAA+GGG + tig0024576:50113-50132 None:intergenic 35.0%
GATGCTTTCGAATTTCAACA+TGG + tig0024576:50229-50248 None:intergenic 35.0%
TGTTCAGTAGTAACATTCTC+AGG + tig0024576:50393-50412 None:intergenic 35.0%
GTTTCATTCATTATGCTGAG+AGG - tig0024576:50496-50515 Msa1418340:CDS 35.0%
AAAAACAGACAAACTTGCAG+GGG + tig0024576:50597-50616 None:intergenic 35.0%
GAAAAAACAGACAAACTTGC+AGG + tig0024576:50599-50618 None:intergenic 35.0%
CAATAACAACTTCAAGAGCT+TGG + tig0024576:50822-50841 None:intergenic 35.0%
! GAAATCTTTATGGCTCTGTA+GGG - tig0024576:50941-50960 Msa1418340:intron 35.0%
! AAATCTTTATGGCTCTGTAG+GGG - tig0024576:50942-50961 Msa1418340:intron 35.0%
ACAACAGATATTTGCAAGTG+TGG - tig0024576:51017-51036 Msa1418340:intron 35.0%
AACAGCCAATGATATATGGT+AGG - tig0024576:51106-51125 Msa1418340:intron 35.0%
ACAGCCAATGATATATGGTA+GGG - tig0024576:51107-51126 Msa1418340:intron 35.0%
TTTACCTCCTACCACTAATA+GGG + tig0024576:51407-51426 None:intergenic 35.0%
ATTTACCTCCTACCACTAAT+AGG + tig0024576:51408-51427 None:intergenic 35.0%
AATAGAAATATCACTGGTCC+TGG + tig0024576:51587-51606 None:intergenic 35.0%
ATGCGACAACAAAAAGTCAA+GGG + tig0024576:51753-51772 None:intergenic 35.0%
! CACACCCTCATTTTGTGTTT+TGG - tig0024576:45764-45783 Msa1418340:three_prime_UTR 40.0%
CTCTTTCTCTCTCTCTTCAA+AGG - tig0024576:45825-45844 Msa1418340:three_prime_UTR 40.0%
! GGGTTTTACTTATGGATGGA+TGG - tig0024576:46380-46399 Msa1418340:intron 40.0%
! GGTTGAGAAATAGATAACGG+TGG + tig0024576:46469-46488 None:intergenic 40.0%
ATTACCCGGTATGGAATACT+AGG + tig0024576:46507-46526 None:intergenic 40.0%
TGATTAATGTGTGATCCTGC+AGG - tig0024576:46781-46800 Msa1418340:intron 40.0%
ATAAACAGGTAAACACCTGC+AGG + tig0024576:46799-46818 None:intergenic 40.0%
CAAAAAGACCAATTTCCCGA+AGG - tig0024576:47019-47038 Msa1418340:CDS 40.0%
!!! TGGTCACTTTTTTCTCCTTC+GGG + tig0024576:47037-47056 None:intergenic 40.0%
GAAGGAGAAAAAAGTGACCA+TGG - tig0024576:47037-47056 Msa1418340:CDS 40.0%
ATAAAGACTTCAGACCCATG+AGG + tig0024576:47142-47161 None:intergenic 40.0%
! CATGGGTCTGAAGTCTTTAT+TGG - tig0024576:47142-47161 Msa1418340:CDS 40.0%
ACCTCAACAATATCACCCAT+GGG + tig0024576:47217-47236 None:intergenic 40.0%
TTAATCAAAGACAGGGAGAC+TGG - tig0024576:47343-47362 Msa1418340:intron 40.0%
! CGTGGGTTATAAAACAAAGG+AGG - tig0024576:47387-47406 Msa1418340:intron 40.0%
GGGTTATAAAACAAAGGAGG+TGG - tig0024576:47390-47409 Msa1418340:intron 40.0%
CATTCCAAAAACATGGACAG+AGG - tig0024576:47628-47647 Msa1418340:intron 40.0%
! TCATCCTCTGTCCATGTTTT+TGG + tig0024576:47635-47654 None:intergenic 40.0%
AGATCAATGCTTTCAACTCC+GGG + tig0024576:47686-47705 None:intergenic 40.0%
GAGATCAATGCTTTCAACTC+CGG + tig0024576:47687-47706 None:intergenic 40.0%
ACGACAAAAGATGTCAAGTG+TGG - tig0024576:47874-47893 Msa1418340:intron 40.0%
CGACAAAAGATGTCAAGTGT+GGG - tig0024576:47875-47894 Msa1418340:intron 40.0%
! TTCACAGGTGTGTGATTTTC+TGG - tig0024576:47973-47992 Msa1418340:intron 40.0%
! AATCAGTTTAGGTTCCACAG+GGG + tig0024576:48131-48150 None:intergenic 40.0%
! CAATCAGTTTAGGTTCCACA+GGG + tig0024576:48132-48151 None:intergenic 40.0%
GTTGCTTATTCCCTATGTGA+AGG - tig0024576:48312-48331 Msa1418340:intron 40.0%
CTTGTGATATGCCTTCACAT+AGG + tig0024576:48326-48345 None:intergenic 40.0%
TGAGGAATCATAGTGTTCTG+CGG - tig0024576:48352-48371 Msa1418340:intron 40.0%
CATCTCTCATACGTCGTTTA+GGG + tig0024576:48948-48967 None:intergenic 40.0%
TCATCTCTCATACGTCGTTT+AGG + tig0024576:48949-48968 None:intergenic 40.0%
GAGATTTCACCTAAGGATCT+TGG + tig0024576:49529-49548 None:intergenic 40.0%
CAAACTCGAGATTTCACCTA+AGG + tig0024576:49536-49555 None:intergenic 40.0%
AGGAATAATTGGGCAGGAAA+GGG + tig0024576:49590-49609 None:intergenic 40.0%
TAGGAATAATTGGGCAGGAA+AGG + tig0024576:49591-49610 None:intergenic 40.0%
AAAGTAACTTTGCAGCAGAG+TGG + tig0024576:49724-49743 None:intergenic 40.0%
CAAAACCGCATCAGTTAACA+AGG + tig0024576:49914-49933 None:intergenic 40.0%
! CTTGTTAACTGATGCGGTTT+TGG - tig0024576:49912-49931 Msa1418340:CDS 40.0%
TGTGATAGATTCTAGCATGC+AGG + tig0024576:50012-50031 None:intergenic 40.0%
GCAGATAAAATTGCGAGACA+AGG + tig0024576:50114-50133 None:intergenic 40.0%
TCATGGGGAAGTAACAAAAG+TGG - tig0024576:50434-50453 Msa1418340:CDS 40.0%
!!! GTTTTTTCTTTCTTCGACGG+AGG - tig0024576:50611-50630 Msa1418340:CDS 40.0%
!! AAGAGTGTCACTGGTCTTAT+TGG - tig0024576:50725-50744 Msa1418340:exon 40.0%
!!! TCAGGTTTTTTTTCAGCCTG+AGG + tig0024576:50850-50869 None:intergenic 40.0%
CAGGCTGAAAAAAAACCTGA+TGG - tig0024576:50850-50869 Msa1418340:intron 40.0%
GCTGAAAAAAAACCTGATGG+AGG - tig0024576:50853-50872 Msa1418340:intron 40.0%
AAGTTACCATAACCAGGATG+TGG + tig0024576:50916-50935 None:intergenic 40.0%
! GGAAATCTTTATGGCTCTGT+AGG - tig0024576:50940-50959 Msa1418340:intron 40.0%
CAGCCAATGATATATGGTAG+GGG - tig0024576:51108-51127 Msa1418340:intron 40.0%
!! GTTCCAATGGTTTTACCAGA+TGG - tig0024576:51156-51175 Msa1418340:intron 40.0%
! GTTTTACCAGATGGTCGAAT+TGG - tig0024576:51165-51184 Msa1418340:intron 40.0%
GAAGATATCGACCCTATTAG+TGG - tig0024576:51393-51412 Msa1418340:intron 40.0%
ATATCGACCCTATTAGTGGT+AGG - tig0024576:51397-51416 Msa1418340:intron 40.0%
ATCACATGGTTGTGTCTTCT+TGG - tig0024576:51440-51459 Msa1418340:intron 40.0%
CATCAGTTCAGGATTGAGAA+AGG + tig0024576:51512-51531 None:intergenic 40.0%
ATCCTGAACTGATGAGAAGA+AGG - tig0024576:51518-51537 Msa1418340:intron 40.0%
TCCTGAACTGATGAGAAGAA+GGG - tig0024576:51519-51538 Msa1418340:intron 40.0%
CATGCGACAACAAAAAGTCA+AGG + tig0024576:51754-51773 None:intergenic 40.0%
TAGATTTCCATCACATGGCC+TGG - tig0024576:46306-46325 Msa1418340:intron 45.0%
GTTCATTTAAACAACGGGCC+AGG + tig0024576:46327-46346 None:intergenic 45.0%
! AAATAGATAACGGTGGGGTG+GGG + tig0024576:46462-46481 None:intergenic 45.0%
! GAAATAGATAACGGTGGGGT+GGG + tig0024576:46463-46482 None:intergenic 45.0%
! AGAAATAGATAACGGTGGGG+TGG + tig0024576:46464-46483 None:intergenic 45.0%
AGCTGCCTAGTATTCCATAC+CGG - tig0024576:46499-46518 Msa1418340:intron 45.0%
ACGCAATTTAATGCTCCCTC+CGG + tig0024576:46660-46679 None:intergenic 45.0%
TCTGCACCTTCTGACATGAT+TGG + tig0024576:46836-46855 None:intergenic 45.0%
AGAGATGGACGATGATGTTG+AGG - tig0024576:46898-46917 Msa1418340:intron 45.0%
GAGGAACAGATAGATGACGA+TGG - tig0024576:46917-46936 Msa1418340:intron 45.0%
ACAGATAGATGACGATGGAG+TGG - tig0024576:46922-46941 Msa1418340:intron 45.0%
ATAGATGACGATGGAGTGGA+TGG - tig0024576:46926-46945 Msa1418340:intron 45.0%
GGCGAAGATGAAAATGCTGA+AGG - tig0024576:46950-46969 Msa1418340:intron 45.0%
ACCAGCTCTCATTGATGAAG+AGG - tig0024576:47081-47100 Msa1418340:CDS 45.0%
TCCTCTTCATCAATGAGAGC+TGG + tig0024576:47085-47104 None:intergenic 45.0%
! GGGTCTGAAGTCTTTATTGG+CGG - tig0024576:47145-47164 Msa1418340:CDS 45.0%
!! TCTTTATTGGCGGACTTCCT+CGG - tig0024576:47155-47174 Msa1418340:CDS 45.0%
ATACATGTGACGACGATGTC+AGG - tig0024576:47179-47198 Msa1418340:CDS 45.0%
TACATGTGACGACGATGTCA+GGG - tig0024576:47180-47199 Msa1418340:CDS 45.0%
GACCTCAACAATATCACCCA+TGG + tig0024576:47218-47237 None:intergenic 45.0%
TTTCAGCGTAGGGAACAAGT+TGG - tig0024576:47278-47297 Msa1418340:intron 45.0%
TTCAGCGTAGGGAACAAGTT+GGG - tig0024576:47279-47298 Msa1418340:intron 45.0%
AAGCAAGGGTTATGCATTCG+TGG - tig0024576:47369-47388 Msa1418340:intron 45.0%
AGCAAGGGTTATGCATTCGT+GGG - tig0024576:47370-47389 Msa1418340:intron 45.0%
! TGCTGTCTGAAACCAAACAC+AGG - tig0024576:47591-47610 Msa1418340:intron 45.0%
CATGGACAGAGGATGAGTTT+AGG - tig0024576:47639-47658 Msa1418340:intron 45.0%
TGAGTTTAGGAAAGCCGTTG+AGG - tig0024576:47652-47671 Msa1418340:intron 45.0%
GAGTTTAGGAAAGCCGTTGA+GGG - tig0024576:47653-47672 Msa1418340:intron 45.0%
AGTGTGGGTTTCAAGCTAGA+TGG - tig0024576:47890-47909 Msa1418340:intron 45.0%
! TATCACACCGACTGTCACAT+GGG - tig0024576:47913-47932 Msa1418340:intron 45.0%
!!! TCTTTTTTCATGACCCCCTG+TGG - tig0024576:48114-48133 Msa1418340:intron 45.0%
! ATCAGTTTAGGTTCCACAGG+GGG + tig0024576:48130-48149 None:intergenic 45.0%
! CCAATCAGTTTAGGTTCCAC+AGG + tig0024576:48133-48152 None:intergenic 45.0%
CCTGTGGAACCTAAACTGAT+TGG - tig0024576:48130-48149 Msa1418340:intron 45.0%
TATGTATGGGCTCTCTATCC+TGG - tig0024576:48763-48782 Msa1418340:intron 45.0%
AACGACGTATGAGAGATGAG+TGG - tig0024576:48950-48969 Msa1418340:intron 45.0%
!! TTTGTGCTGATTGCCGAATG+TGG - tig0024576:48978-48997 Msa1418340:intron 45.0%
CATGCAGGACAAAGAAGACT+TGG + tig0024576:49997-50016 None:intergenic 45.0%
TACTAGTCGACAAACATCGC+AGG + tig0024576:50139-50158 None:intergenic 45.0%
! TTGGGACTTTTGCAGAATGC+TGG - tig0024576:50170-50189 Msa1418340:CDS 45.0%
! AAGGAGCTATTTCGTCGTCA+TGG - tig0024576:50417-50436 Msa1418340:CDS 45.0%
! AGGAGCTATTTCGTCGTCAT+GGG - tig0024576:50418-50437 Msa1418340:CDS 45.0%
! GCTTCAGGGAAACGTGATTT+TGG - tig0024576:50474-50493 Msa1418340:CDS 45.0%
! AGTTGTTATTGCGAAGCCTC+AGG - tig0024576:50831-50850 Msa1418340:intron 45.0%
TTGTACGCATAACCTCCATC+AGG + tig0024576:50868-50887 None:intergenic 45.0%
GATGTGGAAGATGGTTAGGA+TGG + tig0024576:50900-50919 None:intergenic 45.0%
CATAACCAGGATGTGGAAGA+TGG + tig0024576:50909-50928 None:intergenic 45.0%
CATCTTCCACATCCTGGTTA+TGG - tig0024576:50907-50926 Msa1418340:intron 45.0%
CCAGAGAAGTTACCATAACC+AGG + tig0024576:50922-50941 None:intergenic 45.0%
CCTGGTTATGGTAACTTCTC+TGG - tig0024576:50919-50938 Msa1418340:intron 45.0%
GGACCCCTACCATATATCAT+TGG + tig0024576:51114-51133 None:intergenic 45.0%
AGGAATGCAGATGGTTCCAA+TGG - tig0024576:51143-51162 Msa1418340:intron 45.0%
CGACCATCTGGTAAAACCAT+TGG + tig0024576:51162-51181 None:intergenic 45.0%
ACATAGCCAATTCGACCATC+TGG + tig0024576:51174-51193 None:intergenic 45.0%
ATTTCCCCGGTCATTTCTAC+GGG + tig0024576:51321-51340 None:intergenic 45.0%
CATTTCCCCGGTCATTTCTA+CGG + tig0024576:51322-51341 None:intergenic 45.0%
GGTAGGAGGTAAATGCAATG+TGG - tig0024576:51414-51433 Msa1418340:intron 45.0%
ATGCAATGTGGCTCATCACA+TGG - tig0024576:51426-51445 Msa1418340:intron 45.0%
ACATGGTTGTGTCTTCTTGG+TGG - tig0024576:51443-51462 Msa1418340:intron 45.0%
!! TTGTGTCTTCTTGGTGGTGT+AGG - tig0024576:51449-51468 Msa1418340:intron 45.0%
!! TGTGTCTTCTTGGTGGTGTA+GGG - tig0024576:51450-51469 Msa1418340:intron 45.0%
TCCCTTCTTCTCATCAGTTC+AGG + tig0024576:51523-51542 None:intergenic 45.0%
GTTAAGGTAGGATTAGGACC+AGG - tig0024576:51566-51585 Msa1418340:intron 45.0%
!! TACTAATAAATAAATAAATA+GGG - tig0024576:48517-48536 Msa1418340:intron 5.0%
!!! ATTAAATTTAAGATTTATTA+AGG + tig0024576:49129-49148 None:intergenic 5.0%
! ATGCAAGGGTGCAAGTGAGA+AGG - tig0024576:45725-45744 Msa1418340:three_prime_UTR 50.0%
ACTAGGCAGCTGCATTGCAA+AGG + tig0024576:46490-46509 None:intergenic 50.0%
GCTGCCTAGTATTCCATACC+GGG - tig0024576:46500-46519 Msa1418340:intron 50.0%
GCGCTGTTGCATAGCAGAAT+TGG + tig0024576:46707-46726 None:intergenic 50.0%
! CCTTCTGACATGATTGGCTC+AGG + tig0024576:46830-46849 None:intergenic 50.0%
CCTGAGCCAATCATGTCAGA+AGG - tig0024576:46827-46846 Msa1418340:intron 50.0%
ATATGAGGAGACAGCAGCAG+AGG - tig0024576:46991-47010 Msa1418340:intron 50.0%
TTCTTTCCCGTCCTCCTCAT+GGG - tig0024576:47125-47144 Msa1418340:CDS 50.0%
AAGACTTCAGACCCATGAGG+AGG + tig0024576:47139-47158 None:intergenic 50.0%
!! CTTTATTGGCGGACTTCCTC+GGG - tig0024576:47156-47175 Msa1418340:CDS 50.0%
AGGGAATTGTGTGAGCCCAT+GGG - tig0024576:47199-47218 Msa1418340:intron 50.0%
GCCCATGGGTGATATTGTTG+AGG - tig0024576:47213-47232 Msa1418340:intron 50.0%
AGGGAGACTGGAGAAAGCAA+GGG - tig0024576:47355-47374 Msa1418340:intron 50.0%
AACAAAGGAGGTGGCACAGA+AGG - tig0024576:47399-47418 Msa1418340:intron 50.0%
! GTATCACACCGACTGTCACA+TGG - tig0024576:47912-47931 Msa1418340:intron 50.0%
ACTGGTCAGGTGAGGTCTTT+GGG + tig0024576:47943-47962 None:intergenic 50.0%
ACCTGTCGATGTAGGTTCGT+CGG - tig0024576:48615-48634 Msa1418340:intron 50.0%
CGATGTAGGTTCGTCGGTAA+TGG - tig0024576:48621-48640 Msa1418340:intron 50.0%
AGCACACATGTGCGAAAACC+AGG + tig0024576:48784-48803 None:intergenic 50.0%
!! GCAAGAGAAGAGCTCTGGAA+CGG + tig0024576:48849-48868 None:intergenic 50.0%
CAAACGCAAGAGAAGAGCTC+TGG + tig0024576:48854-48873 None:intergenic 50.0%
! GAACCTTTTGACCTGGTCTC+TGG - tig0024576:48878-48897 Msa1418340:intron 50.0%
TTGCCAGAGACCAGGTCAAA+AGG + tig0024576:48884-48903 None:intergenic 50.0%
GGAAATGTTTGCCAGAGACC+AGG + tig0024576:48892-48911 None:intergenic 50.0%
GAGAATCGTGGGACGTAACA+CGG + tig0024576:49306-49325 None:intergenic 50.0%
GGCAGGAAAGGGAGAAATGA+GGG + tig0024576:49579-49598 None:intergenic 50.0%
TAGTCGACAAACATCGCAGG+AGG + tig0024576:50136-50155 None:intergenic 50.0%
! GGAGCTATTTCGTCGTCATG+GGG - tig0024576:50419-50438 Msa1418340:CDS 50.0%
ACAAAAGTGGTCATGCCACC+TGG - tig0024576:50447-50466 Msa1418340:CDS 50.0%
GGAGGTTATGCGTACAATCC+TGG - tig0024576:50871-50890 Msa1418340:intron 50.0%
AGATGGTTAGGATGGAGTCC+AGG + tig0024576:50892-50911 None:intergenic 50.0%
CCAGGATGTGGAAGATGGTT+AGG + tig0024576:50904-50923 None:intergenic 50.0%
CCTAACCATCTTCCACATCC+TGG - tig0024576:50901-50920 Msa1418340:intron 50.0%
! TGCTGCTGCTGCTTATCAAC+AGG - tig0024576:50981-51000 Msa1418340:intron 50.0%
ATCTGCATTCCTGCTGGCAT+TGG + tig0024576:51135-51154 None:intergenic 50.0%
AATGCCAGCAGGAATGCAGA+TGG - tig0024576:51134-51153 Msa1418340:intron 50.0%
ATGTTCTGCAGTCAACAGCC+TGG - tig0024576:51272-51291 Msa1418340:intron 50.0%
TTTCCCCGGTCATTTCTACG+GGG + tig0024576:51320-51339 None:intergenic 50.0%
CGTAGAAATGACCGGGGAAA+TGG - tig0024576:51320-51339 Msa1418340:intron 50.0%
! GGAGGTGGTGGTAATGATGA+TGG - tig0024576:51359-51378 Msa1418340:intron 50.0%
TCGACCCTATTAGTGGTAGG+AGG - tig0024576:51400-51419 Msa1418340:intron 50.0%
!! GTGTCTTCTTGGTGGTGTAG+GGG - tig0024576:51451-51470 Msa1418340:intron 50.0%
! TGCAAGTGAGAAGGAGCGCA+TGG - tig0024576:45734-45753 Msa1418340:three_prime_UTR 55.0%
! TGAGCGTGTTGACCTCGATG+AGG - tig0024576:46862-46881 Msa1418340:intron 55.0%
GATGACGATGGAGTGGATGG+AGG - tig0024576:46929-46948 Msa1418340:intron 55.0%
GCTCATCTTCTTCAGCGCCA+TGG + tig0024576:47057-47076 None:intergenic 55.0%
CTTCTTTCCCGTCCTCCTCA+TGG - tig0024576:47124-47143 Msa1418340:CDS 55.0%
TTCAGACCCATGAGGAGGAC+GGG + tig0024576:47134-47153 None:intergenic 55.0%
CTTCAGACCCATGAGGAGGA+CGG + tig0024576:47135-47154 None:intergenic 55.0%
TCGTCGTCACATGTATCCCG+AGG + tig0024576:47175-47194 None:intergenic 55.0%
CAGGGAATTGTGTGAGCCCA+TGG - tig0024576:47198-47217 Msa1418340:CDS 55.0%
CAGGGAGACTGGAGAAAGCA+AGG - tig0024576:47354-47373 Msa1418340:intron 55.0%
! AGGAAAGCCGTTGAGGGTGT+TGG - tig0024576:47659-47678 Msa1418340:intron 55.0%
! GACTGGTCAGGTGAGGTCTT+TGG + tig0024576:47944-47963 None:intergenic 55.0%
ACCGACGAACCTACATCGAC+AGG + tig0024576:48619-48638 None:intergenic 55.0%
!! AAGAGCTCTGGAACGGCTGA+GGG + tig0024576:48842-48861 None:intergenic 55.0%
!! AAAGCGGATCGGTTTGGGCA+AGG + tig0024576:48913-48932 None:intergenic 55.0%
! GCTGCAAAGCGGATCGGTTT+GGG + tig0024576:48918-48937 None:intergenic 55.0%
TTCTGCGCTGCAAAGCGGAT+CGG + tig0024576:48924-48943 None:intergenic 55.0%
AGGGTTTCTGCGCTGCAAAG+CGG + tig0024576:48929-48948 None:intergenic 55.0%
GTGAATCGCGGGACGTAACA+CGG + tig0024576:49493-49512 None:intergenic 55.0%
GGGCAGGAAAGGGAGAAATG+AGG + tig0024576:49580-49599 None:intergenic 55.0%
ATGCCACCTGGCAAAGCTTC+AGG - tig0024576:50459-50478 Msa1418340:CDS 55.0%
TGCCACCTGGCAAAGCTTCA+GGG - tig0024576:50460-50479 Msa1418340:CDS 55.0%
TTCCCTGAAGCTTTGCCAGG+TGG + tig0024576:50465-50484 None:intergenic 55.0%
CGTTTCCCTGAAGCTTTGCC+AGG + tig0024576:50468-50487 None:intergenic 55.0%
! CTTTATGGCTCTGTAGGGGC+TGG - tig0024576:50946-50965 Msa1418340:intron 55.0%
GGAACCATCTGCATTCCTGC+TGG + tig0024576:51141-51160 None:intergenic 55.0%
CAGTCAACAGCCTGGTGTAC+AGG - tig0024576:51280-51299 Msa1418340:intron 55.0%
AATGACCGGGGAAATGGTCC+AGG - tig0024576:51326-51345 Msa1418340:intron 55.0%
ATGCATCAGATCCCCCCTCA+AGG + tig0024576:51478-51497 None:intergenic 55.0%
! AGATAACGGTGGGGTGGGGT+GGG + tig0024576:46458-46477 None:intergenic 60.0%
! TAGATAACGGTGGGGTGGGG+TGG + tig0024576:46459-46478 None:intergenic 60.0%
TCCGGGACCAACACCCTCAA+CGG + tig0024576:47669-47688 None:intergenic 60.0%
GGGTCAGCCCATGTGACAGT+CGG + tig0024576:47923-47942 None:intergenic 60.0%
! AGCAGCAGACTGGTCAGGTG+AGG + tig0024576:47951-47970 None:intergenic 60.0%
! GAAGCAGCAGCAGACTGGTC+AGG + tig0024576:47956-47975 None:intergenic 60.0%
CCTGTGAAGCAGCAGCAGAC+TGG + tig0024576:47961-47980 None:intergenic 60.0%
! CCAGTCTGCTGCTGCTTCAC+AGG - tig0024576:47958-47977 Msa1418340:intron 60.0%
!! GAAGAGCTCTGGAACGGCTG+AGG + tig0024576:48843-48862 None:intergenic 60.0%
CGCTGCAAAGCGGATCGGTT+TGG + tig0024576:48919-48938 None:intergenic 60.0%
GGCTCTGTAGGGGCTGGATA+TGG - tig0024576:50952-50971 Msa1418340:intron 60.0%
CGGTCATTTCTACGGGGTCG+GGG + tig0024576:51314-51333 None:intergenic 60.0%
CCGGTCATTTCTACGGGGTC+GGG + tig0024576:51315-51334 None:intergenic 60.0%
CCCGACCCCGTAGAAATGAC+CGG - tig0024576:51312-51331 Msa1418340:intron 60.0%
CCCGGTCATTTCTACGGGGT+CGG + tig0024576:51316-51335 None:intergenic 60.0%
CCGACCCCGTAGAAATGACC+GGG - tig0024576:51313-51332 Msa1418340:intron 60.0%
CGACCCCGTAGAAATGACCG+GGG - tig0024576:51314-51333 Msa1418340:intron 60.0%
! TGGTGGTGTAGGGGTCCTTG+AGG - tig0024576:51460-51479 Msa1418340:intron 60.0%
GGTGGTGTAGGGGTCCTTGA+GGG - tig0024576:51461-51480 Msa1418340:intron 60.0%
GTGGTGTAGGGGTCCTTGAG+GGG - tig0024576:51462-51481 Msa1418340:intron 60.0%
TGGTGTAGGGGTCCTTGAGG+GGG - tig0024576:51463-51482 Msa1418340:intron 60.0%
CAACGGGCCAGGCCATGTGA+TGG + tig0024576:46316-46335 None:intergenic 65.0%
GAGGAGACAGCAGCAGAGGC+TGG - tig0024576:46995-47014 Msa1418340:intron 65.0%
!! GCCGTTGAGGGTGTTGGTCC+CGG - tig0024576:47665-47684 Msa1418340:intron 65.0%
GGTAGGGGTCCAATGCCAGC+AGG - tig0024576:51123-51142 Msa1418340:intron 65.0%
CAGCCTGGTGTACAGGTGCC+AGG - tig0024576:51287-51306 Msa1418340:intron 65.0%
GGACCTGGCACCTGTACACC+AGG + tig0024576:51293-51312 None:intergenic 65.0%
TTTCTACGGGGTCGGGGACC+TGG + tig0024576:51308-51327 None:intergenic 65.0%
GACCGGGGAAATGGTCCAGG+CGG - tig0024576:51329-51348 Msa1418340:intron 65.0%
ACCGGGGAAATGGTCCAGGC+GGG - tig0024576:51330-51349 Msa1418340:intron 65.0%
GGTGTAGGGGTCCTTGAGGG+GGG - tig0024576:51464-51483 Msa1418340:intron 65.0%
AACGGTGGGGTGGGGTGGGT+GGG + tig0024576:46454-46473 None:intergenic 70.0%
TAACGGTGGGGTGGGGTGGG+TGG + tig0024576:46455-46474 None:intergenic 70.0%
GCCCGCCTGGACCATTTCCC+CGG + tig0024576:51334-51353 None:intergenic 70.0%
GGAAATGGTCCAGGCGGGCG+TGG - tig0024576:51335-51354 Msa1418340:intron 70.0%
AATGGTCCAGGCGGGCGTGG+AGG - tig0024576:51338-51357 Msa1418340:intron 70.0%
! GGTCCAGGCGGGCGTGGAGG+AGG - tig0024576:51341-51360 Msa1418340:intron 80.0%
! CCACCTCCTCCACGCCCGCC+TGG + tig0024576:51347-51366 None:intergenic 80.0%
! CCAGGCGGGCGTGGAGGAGG+TGG - tig0024576:51344-51363 Msa1418340:intron 80.0%
! GGCGGGCGTGGAGGAGGTGG+TGG - tig0024576:51347-51366 Msa1418340:intron 80.0%
Chromosome Type Strat End Strand Name
tig0024576 gene 45721 51859 45721 ID=Msa1418340;Name=Msa1418340
tig0024576 mRNA 45721 51859 45721 ID=Msa1418340-mRNA-1;Parent=Msa1418340;Name=Msa1418340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=257|1|1|1|1|1|9|447|479
tig0024576 exon 45721 46297 45721 ID=Msa1418340-mRNA-1:exon:314;Parent=Msa1418340-mRNA-1
tig0024576 exon 46384 46469 46384 ID=Msa1418340-mRNA-1:exon:313;Parent=Msa1418340-mRNA-1
tig0024576 exon 46578 46762 46578 ID=Msa1418340-mRNA-1:exon:312;Parent=Msa1418340-mRNA-1
tig0024576 exon 47013 47217 47013 ID=Msa1418340-mRNA-1:exon:311;Parent=Msa1418340-mRNA-1
tig0024576 exon 49601 49780 49601 ID=Msa1418340-mRNA-1:exon:310;Parent=Msa1418340-mRNA-1
tig0024576 exon 49868 50008 49868 ID=Msa1418340-mRNA-1:exon:309;Parent=Msa1418340-mRNA-1
tig0024576 exon 50127 50243 50127 ID=Msa1418340-mRNA-1:exon:308;Parent=Msa1418340-mRNA-1
tig0024576 exon 50346 50777 50346 ID=Msa1418340-mRNA-1:exon:307;Parent=Msa1418340-mRNA-1
tig0024576 exon 51639 51859 51639 ID=Msa1418340-mRNA-1:exon:306;Parent=Msa1418340-mRNA-1
tig0024576 five_prime_UTR 51639 51859 51639 ID=Msa1418340-mRNA-1:five_prime_utr;Parent=Msa1418340-mRNA-1
tig0024576 five_prime_UTR 50742 50777 50742 ID=Msa1418340-mRNA-1:five_prime_utr;Parent=Msa1418340-mRNA-1
tig0024576 CDS 50346 50741 50346 ID=Msa1418340-mRNA-1:cds;Parent=Msa1418340-mRNA-1
tig0024576 CDS 50127 50243 50127 ID=Msa1418340-mRNA-1:cds;Parent=Msa1418340-mRNA-1
tig0024576 CDS 49868 50008 49868 ID=Msa1418340-mRNA-1:cds;Parent=Msa1418340-mRNA-1
tig0024576 CDS 49601 49780 49601 ID=Msa1418340-mRNA-1:cds;Parent=Msa1418340-mRNA-1
tig0024576 CDS 47013 47217 47013 ID=Msa1418340-mRNA-1:cds;Parent=Msa1418340-mRNA-1
tig0024576 CDS 46578 46762 46578 ID=Msa1418340-mRNA-1:cds;Parent=Msa1418340-mRNA-1
tig0024576 CDS 46384 46469 46384 ID=Msa1418340-mRNA-1:cds;Parent=Msa1418340-mRNA-1
tig0024576 CDS 46168 46297 46168 ID=Msa1418340-mRNA-1:cds;Parent=Msa1418340-mRNA-1
tig0024576 three_prime_UTR 45721 46167 45721 ID=Msa1418340-mRNA-1:three_prime_utr;Parent=Msa1418340-mRNA-1
Gene Sequence

>Msa1418340

ATGTCAGAAGGTGCAGAGATCGATGAGCGTGTTGACCTCGATGAGGAAAATTATATGGAAGAGATGGACGATGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGGAGGCGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACACGAATATGAGGAGACAGCAGCAGAGGCTGGTCAAAAAGACCAATTTCCCGAAGGAGAAAAAAGTGACCATGGCGCTGAAGAAGATGAGCATAAACCAGCTCTCATTGATGAAGAGGAGAGAGAGAAGCATGATGAACTTCTTTCCCGTCCTCCTCATGGGTCTGAAGTCTTTATTGGCGGACTTCCTCGGGATACATGTGACGACGATGTCAGGGAATTGTGTGAGCCCATGGGTGATATTGTTGAGATTAAATTAATCAAAGACAGGGAGACTGGAGAAAGCAAGGGTTATGCATTCGTGGGTTATAAAACAAAGGAGGTGGCACAGAAGGCCATTGATGATATACATAACAAGGAATTTAAGGGAAAAACTTTGAGGTGTTTGCTGTCTGAAACCAAACACAGGTTATTCATTGGTAACATTCCAAAAACATGGACAGAGGATGAGTTTAGGAAAGCCGTTGAGGGTGTTGGTCCCGGAGTTGAAAGCATTGATCTCATAAAGGACCCTCAAAATCAAAGCAGAAATCGTGGGTTTGCTTTTGTTTTGTATTACAACAACGCATGTGCTGATTATTCACGACAAAAGATGTCAAGTGTGGGTTTCAAGCTAGATGGTATCACACCGACTGTCACATGGGCTGACCCAAAGACCTCACCTGACCAGTCTGCTGCTGCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTTCAGGGAAACGTGATTTTGGTTTCATTCATTATGCTGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACGGAGAAATATGAAATTGACGGCCAAGCTCTTGAAGTTGTTATTGCGAAGCCTCAGGCTGAAAAAAAACCTGATGGAGGTTATGCGTACAATCCTGGACTCCATCCTAACCATCTTCCACATCCTGGTTATGGTAACTTCTCTGGAAATCTTTATGGCTCTGTAGGGGCTGGATATGGTGTTGCTGCTGCTGCTGCTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGGTCCCCGACCCCGTAGAAATGACCGGGGAAATGGTCCAGGCGGGCGTGGAGGAGGTGGTGGTAATGATGATGGAAATCGTAATAGAAGATATCGACCCTATTAG
Protein sequence

>Msa1418340

MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAGQKDQFPEGEKSDHGAEEDEHKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTCDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADYSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRRNDRGNGPGGRGGGGGNDDGNRNRRYRPY*