Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446520 | sp|Q9FYG4|GLOX1_ARATH | 48.276 | 522 | 261 | 8 | 30 | 544 | 96 | 615 | 9.02e-162 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446520 | G7I5Z0 | 95.948 | 543 | 20 | 2 | 3 | 544 | 2 | 543 | 0.0 | 1043 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003040 | Msa1446520 | 0.960846 | 5.072425e-119 | -8.615850e-47 |
| Msa0036430 | Msa1446520 | 0.802820 | 4.678258e-49 | -8.615850e-47 |
| Msa1420060 | Msa1446520 | 0.803195 | 3.915055e-49 | -8.615850e-47 |
| Msa1442630 | Msa1446520 | 0.806544 | 7.811909e-50 | -8.615850e-47 |
| Msa0146920 | Msa1446520 | 0.956485 | 2.638439e-114 | -8.615850e-47 |
| Msa0236110 | Msa1446520 | 0.827449 | 1.555260e-54 | -8.615850e-47 |
| Msa1227340 | Msa1446520 | 0.987869 | 7.705157e-172 | -8.615850e-47 |
| Msa0273990 | Msa1446520 | 0.809512 | 1.823908e-50 | -8.615850e-47 |
| Msa0314630 | Msa1446520 | 0.822010 | 2.977347e-53 | -8.615850e-47 |
| Msa0322830 | Msa1446520 | 0.831853 | 1.318763e-55 | -8.615850e-47 |
| Msa0322860 | Msa1446520 | 0.820053 | 8.404245e-53 | -8.615850e-47 |
| Msa1113850 | Msa1446520 | 0.805891 | 1.072570e-49 | -8.615850e-47 |
| Msa0979510 | Msa1446520 | 0.820547 | 6.474889e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446520 | MtrunA17_Chr1g0155971 | 95.948 | 543 | 20 | 2 | 3 | 544 | 2 | 543 | 0.0 | 1043 |
| Msa1446520 | MtrunA17_Chr3g0142351 | 71.212 | 528 | 142 | 5 | 26 | 544 | 29 | 555 | 0.0 | 798 |
| Msa1446520 | MtrunA17_Chr6g0449561 | 73.062 | 516 | 134 | 3 | 34 | 544 | 1 | 516 | 0.0 | 796 |
| Msa1446520 | MtrunA17_Chr7g0273771 | 57.824 | 524 | 210 | 5 | 30 | 544 | 49 | 570 | 0.0 | 617 |
| Msa1446520 | MtrunA17_Chr5g0415971 | 49.638 | 552 | 237 | 12 | 30 | 543 | 43 | 591 | 0.0 | 534 |
| Msa1446520 | MtrunA17_Chr8g0390171 | 44.612 | 529 | 278 | 12 | 26 | 543 | 108 | 632 | 2.02e-152 | 450 |
| Msa1446520 | MtrunA17_Chr3g0116651 | 44.129 | 528 | 275 | 10 | 30 | 543 | 42 | 563 | 1.05e-149 | 441 |
| Msa1446520 | MtrunA17_Chr4g0008611 | 45.185 | 540 | 277 | 11 | 9 | 543 | 6 | 531 | 4.34e-148 | 436 |
| Msa1446520 | MtrunA17_Chr6g0486561 | 44.835 | 455 | 229 | 12 | 106 | 543 | 8 | 457 | 4.36e-124 | 372 |
| Msa1446520 | MtrunA17_Chr6g0486551 | 39.024 | 82 | 47 | 2 | 28 | 106 | 54 | 135 | 2.09e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446520 | AT1G75620.1 | 61.850 | 519 | 186 | 6 | 30 | 543 | 35 | 546 | 0.0 | 664 |
| Msa1446520 | AT1G19900.1 | 59.501 | 521 | 206 | 4 | 27 | 543 | 28 | 547 | 0.0 | 660 |
| Msa1446520 | AT3G57620.1 | 51.560 | 545 | 242 | 6 | 14 | 543 | 9 | 546 | 0.0 | 587 |
| Msa1446520 | AT1G14430.1 | 50.542 | 554 | 250 | 8 | 7 | 543 | 18 | 564 | 0.0 | 553 |
| Msa1446520 | AT5G19580.1 | 46.857 | 525 | 264 | 10 | 29 | 544 | 76 | 594 | 9.21e-165 | 481 |
| Msa1446520 | AT1G67290.1 | 48.276 | 522 | 261 | 8 | 30 | 544 | 96 | 615 | 9.17e-163 | 476 |
| Msa1446520 | AT3G53950.1 | 44.952 | 525 | 265 | 12 | 30 | 544 | 34 | 544 | 2.11e-146 | 432 |
Find 161 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCATTCCACTGCAATTT+TGG | 0.154597 | tig0031371:-38328 | Msa1446520:CDS |
| AGCAACATTGGATAAGAATT+TGG | 0.214373 | tig0031371:-38097 | Msa1446520:CDS |
| TCCACAACCCATGTTGGATT+TGG | 0.222957 | tig0031371:+38549 | None:intergenic |
| AAATTCCTAGTGAAGGAATT+TGG | 0.231449 | tig0031371:-37888 | Msa1446520:CDS |
| ATAATTAATGGAGCGGGTTC+GGG | 0.268444 | tig0031371:-38465 | Msa1446520:CDS |
| GATAATTAATGGAGCGGGTT+CGG | 0.293058 | tig0031371:-38466 | Msa1446520:CDS |
| GTGATTGTTGTTATGAGAAT+TGG | 0.326429 | tig0031371:+40168 | None:intergenic |
| CCACAACCCATGTTGGATTT+GGG | 0.333106 | tig0031371:+38550 | None:intergenic |
| GCATCAAGGCGTGAGTTTCT+TGG | 0.335410 | tig0031371:-38609 | Msa1446520:CDS |
| TCACCTATTCTTGCACCTCC+TGG | 0.339464 | tig0031371:-37940 | Msa1446520:CDS |
| ATTATCAAAACGTCCCCATT+TGG | 0.341185 | tig0031371:+38483 | None:intergenic |
| ATAAAATTGTAACCAATATG+AGG | 0.355050 | tig0031371:+38270 | None:intergenic |
| AACCGATTGCACGGCTCATT+CGG | 0.355271 | tig0031371:-39953 | Msa1446520:CDS |
| CACCAACAACCTCTGATTCA+TGG | 0.367118 | tig0031371:+38029 | None:intergenic |
| GACACTTTCCGTTGGGTAAA+GGG | 0.373285 | tig0031371:+40004 | None:intergenic |
| GGGACAGCAGGGTGGGAATA+CGG | 0.374378 | tig0031371:-38444 | Msa1446520:CDS |
| TAAAGAACCGGATTTAGAAC+TGG | 0.381761 | tig0031371:+38414 | None:intergenic |
| TACAAAACTAATAACGTAAT+CGG | 0.382791 | tig0031371:-38393 | Msa1446520:CDS |
| CGTGATGGTAGGGTTCTTGT+TGG | 0.385112 | tig0031371:-38303 | Msa1446520:CDS |
| GGAGCGGGTTCGGGGACAGC+AGG | 0.386297 | tig0031371:-38456 | Msa1446520:CDS |
| ACTGACGTTTGGTGTTCTTC+CGG | 0.387753 | tig0031371:-39883 | Msa1446520:CDS |
| AGTTATCCAAGCTCAGGTTC+AGG | 0.393608 | tig0031371:-38723 | Msa1446520:CDS |
| TGGAAGAAGGAAGAGGAGAT+AGG | 0.394304 | tig0031371:+40188 | None:intergenic |
| GAAAATGAGTGTGTGTTAAA+AGG | 0.395788 | tig0031371:+38051 | None:intergenic |
| CCATCTTTGGTAGCCGCAGC+TGG | 0.403295 | tig0031371:-40138 | Msa1446520:CDS |
| TTATCAAAACGTCCCCATTT+GGG | 0.409918 | tig0031371:+38484 | None:intergenic |
| ATGCCTAGGGCTAGAGTAAT+GGG | 0.418773 | tig0031371:-38522 | Msa1446520:CDS |
| GGTGGTAGCAACCCTCATAT+TGG | 0.419674 | tig0031371:-38282 | Msa1446520:CDS |
| AATCACCACCACCCCATCTT+TGG | 0.419887 | tig0031371:-40151 | Msa1446520:CDS |
| GGACAGCAGGGTGGGAATAC+GGG | 0.420291 | tig0031371:-38443 | Msa1446520:CDS |
| CCAGCTGCGGCTACCAAAGA+TGG | 0.424781 | tig0031371:+40138 | None:intergenic |
| GTCTGGACAAGTGTTCCTTT+AGG | 0.436088 | tig0031371:+39850 | None:intergenic |
| TTTGATTGTAGATTCTTCAA+TGG | 0.436753 | tig0031371:+38690 | None:intergenic |
| CGTTTGGTGTTCTTCCGGTT+CGG | 0.443827 | tig0031371:-39878 | Msa1446520:CDS |
| ATATTTGATCGTACTGACTT+TGG | 0.444418 | tig0031371:-40039 | Msa1446520:CDS |
| GGGTCCCCACCTGGGATTTG+AGG | 0.445198 | tig0031371:+38750 | None:intergenic |
| AAGGATTGTGGCTTCTACTT+CGG | 0.446379 | tig0031371:-38166 | Msa1446520:CDS |
| CGACACTTTCCGTTGGGTAA+AGG | 0.450947 | tig0031371:+40003 | None:intergenic |
| CATCGTTGTAGCCACCGGTC+TGG | 0.451241 | tig0031371:+39833 | None:intergenic |
| GACGGACGTCAGATTATCAT+TGG | 0.452067 | tig0031371:-39703 | Msa1446520:CDS |
| AAAAGTTGTTGCTTAATGCT+TGG | 0.455257 | tig0031371:-37686 | Msa1446520:three_prime_UTR |
| GCAAAAGCACGGTCAAAAGT+TGG | 0.456115 | tig0031371:-38139 | Msa1446520:CDS |
| GCTTCGATACTAAGTTCAGT+TGG | 0.459077 | tig0031371:+38234 | None:intergenic |
| ACATGGTAATGCTCCCAAAT+GGG | 0.461570 | tig0031371:-38497 | Msa1446520:CDS |
| GAAGTAGAAGCCACAATCCT+TGG | 0.461659 | tig0031371:+38168 | None:intergenic |
| CCCAAATCCAACATGGGTTG+TGG | 0.465400 | tig0031371:-38550 | Msa1446520:CDS |
| ATGATAATCTGACGTCCGTC+GGG | 0.466571 | tig0031371:+39706 | None:intergenic |
| CAAAAGCACGGTCAAAAGTT+GGG | 0.467287 | tig0031371:-38138 | Msa1446520:CDS |
| CCTGAGCTTGGATAACTCCT+AGG | 0.467424 | tig0031371:+38729 | None:intergenic |
| TCCGTTGGGTAAAGGGAGCT+TGG | 0.468205 | tig0031371:+40011 | None:intergenic |
| TTGTAACAATTGTGATTGGC+AGG | 0.468700 | tig0031371:-39782 | Msa1446520:CDS |
| GAGGAGATAGGTGGTGGTGG+TGG | 0.471284 | tig0031371:+40200 | None:intergenic |
| GGTCATTGTTATTGTCACTA+AGG | 0.471923 | tig0031371:+40221 | None:intergenic |
| GACCGAATGAGCCGTGCAAT+CGG | 0.472666 | tig0031371:+39951 | None:intergenic |
| GACATGGTAATGCTCCCAAA+TGG | 0.475435 | tig0031371:-38498 | Msa1446520:CDS |
| TGTGATTGGCAGGAATTTGA+CGG | 0.477752 | tig0031371:-39772 | Msa1446520:CDS |
| GTTATCCAAGCTCAGGTTCA+GGG | 0.478365 | tig0031371:-38722 | Msa1446520:CDS |
| TCCGGTTCGGTGAATCCTAA+AGG | 0.479007 | tig0031371:-39865 | Msa1446520:CDS |
| AAATCCCAGGTGGGGACCCT+AGG | 0.479903 | tig0031371:-38746 | Msa1446520:CDS |
| CGGGTTCGGGGACAGCAGGG+TGG | 0.481834 | tig0031371:-38452 | Msa1446520:CDS |
| CATGCCTAGGGCTAGAGTAA+TGG | 0.483226 | tig0031371:-38523 | Msa1446520:CDS |
| AATCCAGGAGGTGCAAGAAT+AGG | 0.486846 | tig0031371:+37937 | None:intergenic |
| AAACAAAGTGAATAATGTGC+AGG | 0.487243 | tig0031371:-37998 | Msa1446520:CDS |
| TAACTCCTAGGGTCCCCACC+TGG | 0.487338 | tig0031371:+38741 | None:intergenic |
| TGATATTGAGGTTACTATGC+CGG | 0.487729 | tig0031371:-37965 | Msa1446520:CDS |
| TGTTTGTTCAAACTGACGTT+TGG | 0.489066 | tig0031371:-39894 | Msa1446520:CDS |
| CAGCTGCGGCTACCAAAGAT+GGG | 0.491660 | tig0031371:+40139 | None:intergenic |
| TTTGGTATATGTTACGATGT+TGG | 0.495056 | tig0031371:-38079 | Msa1446520:CDS |
| GTCTCCATCGTTGTAGCCAC+CGG | 0.495723 | tig0031371:+39828 | None:intergenic |
| TCCTTTAGGATTCACCGAAC+CGG | 0.496066 | tig0031371:+39864 | None:intergenic |
| AAGGAAGAGGAGATAGGTGG+TGG | 0.499045 | tig0031371:+40194 | None:intergenic |
| GGGTTCGGGGACAGCAGGGT+GGG | 0.499402 | tig0031371:-38451 | Msa1446520:CDS |
| CTTCGATACTAAGTTCAGTT+GGG | 0.500695 | tig0031371:+38235 | None:intergenic |
| ATACTTGTAACAATTGTGAT+TGG | 0.501433 | tig0031371:-39786 | Msa1446520:CDS |
| AGTACCCCTGAACCTGAGCT+TGG | 0.503306 | tig0031371:+38717 | None:intergenic |
| ACGGACGTCAGATTATCATT+GGG | 0.504627 | tig0031371:-39702 | Msa1446520:CDS |
| TCATGACGACACTTTCCGTT+GGG | 0.507837 | tig0031371:+39997 | None:intergenic |
| ATTTGTGGTGGAGCTCCAAA+AGG | 0.507956 | tig0031371:-38645 | Msa1446520:CDS |
| TGAGAATTGGAAGAAGGAAG+AGG | 0.508192 | tig0031371:+40181 | None:intergenic |
| CATTCGCGAAGCGAGGTTCA+AGG | 0.515507 | tig0031371:+38196 | None:intergenic |
| TGTATCCAAATTCCTTCACT+AGG | 0.522963 | tig0031371:+37883 | None:intergenic |
| TATCAAACATACGAATGGTT+CGG | 0.523167 | tig0031371:+39806 | None:intergenic |
| TATCCTCTTTGACTATACTA+AGG | 0.523749 | tig0031371:-39512 | Msa1446520:intron |
| TTCCATGAATCAGAGGTTGT+TGG | 0.524137 | tig0031371:-38031 | Msa1446520:CDS |
| TTGTTATGAGAATTGGAAGA+AGG | 0.524866 | tig0031371:+40175 | None:intergenic |
| GAAGAGGAGATAGGTGGTGG+TGG | 0.525822 | tig0031371:+40197 | None:intergenic |
| GAATGTTCGTCCAAGGATTG+TGG | 0.526224 | tig0031371:-38178 | Msa1446520:CDS |
| ATCAAAGTTTATACAAGCTG+AGG | 0.526362 | tig0031371:-38673 | Msa1446520:CDS |
| TCCGTCGGGCAGAATATGAT+TGG | 0.527723 | tig0031371:+39720 | None:intergenic |
| ATTTCAAGTAAAAGCAACAT+TGG | 0.531009 | tig0031371:-38109 | Msa1446520:CDS |
| AAGCGAGGTTCAAGGTAAGA+AGG | 0.532513 | tig0031371:+38204 | None:intergenic |
| GCGGACTTGCTGCTCGGAGA+TGG | 0.534369 | tig0031371:-39750 | Msa1446520:CDS |
| GATATTGAGGTTACTATGCC+GGG | 0.535099 | tig0031371:-37964 | Msa1446520:CDS |
| CAGACCGGTGGCTACAACGA+TGG | 0.536809 | tig0031371:-39832 | Msa1446520:CDS |
| GAATCAGAGGTTGTTGGTGT+TGG | 0.537446 | tig0031371:-38025 | Msa1446520:CDS |
| CCTAGGAGTTATCCAAGCTC+AGG | 0.540194 | tig0031371:-38729 | Msa1446520:CDS |
| AACTCCTAGGGTCCCCACCT+GGG | 0.542708 | tig0031371:+38742 | None:intergenic |
| GTCATGACGACACTTTCCGT+TGG | 0.543988 | tig0031371:+39996 | None:intergenic |
| GCGAGACCCAGTTCTAAATC+CGG | 0.547300 | tig0031371:-38421 | Msa1446520:CDS |
| GGGAACAACATATGATATTG+AGG | 0.552074 | tig0031371:-37977 | Msa1446520:CDS |
| TGTTGTTAGCAAAGATGAAG+AGG | 0.554181 | tig0031371:+39539 | None:intergenic |
| TACATTCGAGGCGTATGAGA+TGG | 0.557294 | tig0031371:+38348 | None:intergenic |
| TTGACGGCGGACTTGCTGCT+CGG | 0.557612 | tig0031371:-39756 | Msa1446520:CDS |
| CTACCTTAGTATAGTCAAAG+AGG | 0.562748 | tig0031371:+39509 | None:intergenic |
| ACAAATAGCAGATAAAATCC+AGG | 0.565016 | tig0031371:+37922 | None:intergenic |
| AACCCATGTTGGATTTGGGT+CGG | 0.566702 | tig0031371:+38554 | None:intergenic |
| TAAAATTGTAACCAATATGA+GGG | 0.567574 | tig0031371:+38271 | None:intergenic |
| AAAGAACCGGATTTAGAACT+GGG | 0.569963 | tig0031371:+38415 | None:intergenic |
| TTGGAACAGACTAATGATGC+TGG | 0.570563 | tig0031371:-39610 | Msa1446520:CDS |
| CATAAAGAAATTCCTAGTGA+AGG | 0.570695 | tig0031371:-37895 | Msa1446520:CDS |
| CACCGTTAAAACCGATTGCA+CGG | 0.572292 | tig0031371:-39962 | Msa1446520:CDS |
| AAACAATGGACGGAAAGTGT+TGG | 0.572611 | tig0031371:+39912 | None:intergenic |
| TCACCCATTACTCTAGCCCT+AGG | 0.572852 | tig0031371:+38519 | None:intergenic |
| GCTTCGCGAATGTTCGTCCA+AGG | 0.576507 | tig0031371:-38185 | Msa1446520:CDS |
| GATGGTAGGGTTCTTGTTGG+TGG | 0.579283 | tig0031371:-38300 | Msa1446520:CDS |
| AATGATAATCTGACGTCCGT+CGG | 0.588364 | tig0031371:+39705 | None:intergenic |
| GTCGGGCAGAATATGATTGG+TGG | 0.588441 | tig0031371:+39723 | None:intergenic |
| TAATTAATGGAGCGGGTTCG+GGG | 0.591461 | tig0031371:-38464 | Msa1446520:CDS |
| GGCTACCAAAGATGGGGTGG+TGG | 0.592290 | tig0031371:+40146 | None:intergenic |
| GGCTAGAGTAATGGGTGACA+TGG | 0.592897 | tig0031371:-38514 | Msa1446520:CDS |
| GGGTTGTGGAGACCATGCCT+AGG | 0.592998 | tig0031371:-38536 | Msa1446520:CDS |
| GAGCGGGTTCGGGGACAGCA+GGG | 0.594837 | tig0031371:-38455 | Msa1446520:CDS |
| TAACCGACCCAAATCCAACA+TGG | 0.597315 | tig0031371:-38557 | Msa1446520:CDS |
| AGAACATTTCCTCAAATCCC+AGG | 0.598634 | tig0031371:-38759 | Msa1446520:CDS |
| TCCAAGCTCCCTTTACCCAA+CGG | 0.604138 | tig0031371:-40012 | Msa1446520:CDS |
| AAAGGAACACTTGTCCAGAC+CGG | 0.605527 | tig0031371:-39847 | Msa1446520:CDS |
| TGGTAGCCGCAGCTGGACAA+TGG | 0.606010 | tig0031371:-40131 | Msa1446520:CDS |
| TGCGGCTACCAAAGATGGGG+TGG | 0.606891 | tig0031371:+40143 | None:intergenic |
| GCAGTGGAATGATACATTCG+AGG | 0.606915 | tig0031371:+38336 | None:intergenic |
| CAGTTTGAACAAACAATGGA+CGG | 0.608679 | tig0031371:+39902 | None:intergenic |
| AACAAAGTGAATAATGTGCA+GGG | 0.608995 | tig0031371:-37997 | Msa1446520:CDS |
| AAGAAGGAAGAGGAGATAGG+TGG | 0.613810 | tig0031371:+40191 | None:intergenic |
| CTGAGCTTGGATAACTCCTA+GGG | 0.614436 | tig0031371:+38730 | None:intergenic |
| ACGTCAGTTTGAACAAACAA+TGG | 0.614768 | tig0031371:+39898 | None:intergenic |
| CAAATTTAACTAGAATGTAG+TGG | 0.615118 | tig0031371:-38784 | Msa1446520:intron |
| GTGAAGAAGTTGCATGTGCA+TGG | 0.615355 | tig0031371:+40077 | None:intergenic |
| ACAAGTATCAAACATACGAA+TGG | 0.619375 | tig0031371:+39801 | None:intergenic |
| CTCATAACAGAGATTAGAGA+GGG | 0.620700 | tig0031371:+37778 | None:intergenic |
| GGTTGTGGAGACCATGCCTA+GGG | 0.621634 | tig0031371:-38535 | Msa1446520:CDS |
| GGACGAACATTCGCGAAGCG+AGG | 0.625391 | tig0031371:+38189 | None:intergenic |
| ATCACGAACCAAAATTGCAG+TGG | 0.632842 | tig0031371:+38320 | None:intergenic |
| ATGGTCTCCACAACCCATGT+TGG | 0.632893 | tig0031371:+38543 | None:intergenic |
| CATTTCCTCAAATCCCAGGT+GGG | 0.633836 | tig0031371:-38755 | Msa1446520:CDS |
| ACCAATCATATTCTGCCCGA+CGG | 0.637737 | tig0031371:-39721 | Msa1446520:CDS |
| AACCGACCCAAATCCAACAT+GGG | 0.637839 | tig0031371:-38556 | Msa1446520:CDS |
| ATTTCCTCAAATCCCAGGTG+GGG | 0.639095 | tig0031371:-38754 | Msa1446520:CDS |
| GGTGCAAGAATAGGTGAACC+CGG | 0.641982 | tig0031371:+37946 | None:intergenic |
| TTATCCAAGCTCAGGTTCAG+GGG | 0.643701 | tig0031371:-38721 | Msa1446520:CDS |
| ACTTCGGAACTGCAAAAGCA+CGG | 0.645621 | tig0031371:-38150 | Msa1446520:CDS |
| CATGGTAATGCTCCCAAATG+GGG | 0.649064 | tig0031371:-38496 | Msa1446520:CDS |
| CATTACTCTAGCCCTAGGCA+TGG | 0.651243 | tig0031371:+38524 | None:intergenic |
| AGCTGCGGCTACCAAAGATG+GGG | 0.651533 | tig0031371:+40140 | None:intergenic |
| CGGACGTCAGATTATCATTG+GGG | 0.661128 | tig0031371:-39701 | Msa1446520:CDS |
| GGAACACTTGTCCAGACCGG+TGG | 0.665244 | tig0031371:-39844 | Msa1446520:CDS |
| TACTTGCCATTGTCCAGCTG+CGG | 0.669654 | tig0031371:+40125 | None:intergenic |
| TCTCATAACAGAGATTAGAG+AGG | 0.679213 | tig0031371:+37777 | None:intergenic |
| ACATTTCCTCAAATCCCAGG+TGG | 0.682481 | tig0031371:-38756 | Msa1446520:CDS |
| AATGAGTGTGTGTTAAAAGG+TGG | 0.707159 | tig0031371:+38054 | None:intergenic |
| GGACGTCAGATTATCATTGG+GGG | 0.730353 | tig0031371:-39700 | Msa1446520:CDS |
| AATAGCAGATAAAATCCAGG+AGG | 0.735992 | tig0031371:+37925 | None:intergenic |
| GATTGGCAGGAATTTGACGG+CGG | 0.737585 | tig0031371:-39769 | Msa1446520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTGGTTTTAATTATTATT+TGG | - | tig0031371:38497-38516 | Msa1446520:CDS | 15.0% |
| !!! | TAAATAACTGTGTTTTATTA+TGG | - | tig0031371:38807-38826 | Msa1446520:intron | 15.0% |
| !!! | TAGTAAATGTTTTTCATTTG+TGG | - | tig0031371:38480-38499 | Msa1446520:CDS | 20.0% |
| !! | TCAAATTCATAATTTGAACA+TGG | - | tig0031371:38674-38693 | Msa1446520:CDS | 20.0% |
| !!! | TTATTAGTTTTGTAAAGAAC+CGG | + | tig0031371:39506-39525 | None:intergenic | 20.0% |
| !! | TACAAAACTAATAACGTAAT+CGG | - | tig0031371:39512-39531 | Msa1446520:intron | 20.0% |
| !! | TAAAATTGTAACCAATATGA+GGG | + | tig0031371:39637-39656 | None:intergenic | 20.0% |
| !! | ATAAAATTGTAACCAATATG+AGG | + | tig0031371:39638-39657 | None:intergenic | 20.0% |
| !!! | ATAAAAAAGTACAAACACTA+GGG | + | tig0031371:40249-40268 | None:intergenic | 20.0% |
| !!! | TATAAAAAAGTACAAACACT+AGG | + | tig0031371:40250-40269 | None:intergenic | 20.0% |
| ! | ATACTTGTAACAATTGTGAT+TGG | - | tig0031371:38119-38138 | Msa1446520:CDS | 25.0% |
| !! | ACTTTGCATTATGTTTGTTA+AGG | - | tig0031371:38426-38445 | Msa1446520:CDS | 25.0% |
| !!! | CTGTGTTTTATTATGGTATA+TGG | - | tig0031371:38814-38833 | Msa1446520:intron | 25.0% |
| !!! | ACTTTTAATTTTTGCTACGT+TGG | - | tig0031371:39072-39091 | Msa1446520:intron | 25.0% |
| ! | CAAATTTAACTAGAATGTAG+TGG | - | tig0031371:39121-39140 | Msa1446520:intron | 25.0% |
| ! | TTTGATTGTAGATTCTTCAA+TGG | + | tig0031371:39218-39237 | None:intergenic | 25.0% |
| !! | ATTTCAAGTAAAAGCAACAT+TGG | - | tig0031371:39796-39815 | Msa1446520:CDS | 25.0% |
| !! | AATTTTCAAATGCAATTGTG+TGG | - | tig0031371:40053-40072 | Msa1446520:CDS | 25.0% |
| !!! | AAGCAACAACTTTTTTTTAG+AGG | + | tig0031371:40213-40232 | None:intergenic | 25.0% |
| TTGTTATGAGAATTGGAAGA+AGG | + | tig0031371:37733-37752 | None:intergenic | 30.0% | |
| ! | GTGATTGTTGTTATGAGAAT+TGG | + | tig0031371:37740-37759 | None:intergenic | 30.0% |
| !! | ATATTTGATCGTACTGACTT+TGG | - | tig0031371:37866-37885 | Msa1446520:exon | 30.0% |
| TATCAAACATACGAATGGTT+CGG | + | tig0031371:38102-38121 | None:intergenic | 30.0% | |
| ACAAGTATCAAACATACGAA+TGG | + | tig0031371:38107-38126 | None:intergenic | 30.0% | |
| ! | TTTTACCCTAAAAACGACAA+TGG | - | tig0031371:38250-38269 | Msa1446520:CDS | 30.0% |
| ! | TCATTAGTCTGTTCCAAAAA+CGG | + | tig0031371:38292-38311 | None:intergenic | 30.0% |
| !! | TCCATTTGTTTTTCTCAATG+TGG | - | tig0031371:38336-38355 | Msa1446520:CDS | 30.0% |
| TCCACATTGAGAAAAACAAA+TGG | + | tig0031371:38340-38359 | None:intergenic | 30.0% | |
| !! | TTTGTTTTTCTCAATGTGGA+TGG | - | tig0031371:38340-38359 | Msa1446520:CDS | 30.0% |
| TATCCTCTTTGACTATACTA+AGG | - | tig0031371:38393-38412 | Msa1446520:CDS | 30.0% | |
| ACATAAGTTTGGTCTCATAA+GGG | + | tig0031371:38717-38736 | None:intergenic | 30.0% | |
| TTCGAAGAAAGACATAAGTT+TGG | + | tig0031371:38728-38747 | None:intergenic | 30.0% | |
| AAACTTATGTCTTTCTTCGA+AGG | - | tig0031371:38727-38746 | Msa1446520:CDS | 30.0% | |
| ATCAAAGTTTATACAAGCTG+AGG | - | tig0031371:39232-39251 | Msa1446520:intron | 30.0% | |
| ! | GCTTTTTGATAAGATCCTTT+TGG | + | tig0031371:39278-39297 | None:intergenic | 30.0% |
| !! | GATCTTATCAAAAAGCATCA+AGG | - | tig0031371:39282-39301 | Msa1446520:intron | 30.0% |
| !! | CGTTTTGATAATTAATGGAG+CGG | - | tig0031371:39433-39452 | Msa1446520:intron | 30.0% |
| !! | GTTTTGATAATTAATGGAGC+GGG | - | tig0031371:39434-39453 | Msa1446520:intron | 30.0% |
| AGCAACATTGGATAAGAATT+TGG | - | tig0031371:39808-39827 | Msa1446520:CDS | 30.0% | |
| TTTGGTATATGTTACGATGT+TGG | - | tig0031371:39826-39845 | Msa1446520:CDS | 30.0% | |
| GAAAATGAGTGTGTGTTAAA+AGG | + | tig0031371:39857-39876 | None:intergenic | 30.0% | |
| AAACAAAGTGAATAATGTGC+AGG | - | tig0031371:39907-39926 | Msa1446520:CDS | 30.0% | |
| AACAAAGTGAATAATGTGCA+GGG | - | tig0031371:39908-39927 | Msa1446520:CDS | 30.0% | |
| ACAAATAGCAGATAAAATCC+AGG | + | tig0031371:39986-40005 | None:intergenic | 30.0% | |
| !! | TGGATTTTATCTGCTATTTG+TGG | - | tig0031371:39985-40004 | Msa1446520:CDS | 30.0% |
| CATAAAGAAATTCCTAGTGA+AGG | - | tig0031371:40010-40029 | Msa1446520:CDS | 30.0% | |
| AAATTCCTAGTGAAGGAATT+TGG | - | tig0031371:40017-40036 | Msa1446520:CDS | 30.0% | |
| ! | AAAAGTTGTTGCTTAATGCT+TGG | - | tig0031371:40219-40238 | Msa1446520:exon | 30.0% |
| ! | GGTCATTGTTATTGTCACTA+AGG | + | tig0031371:37687-37706 | None:intergenic | 35.0% |
| ! | CAAGTACTGCAAAAAAGCAT+CGG | - | tig0031371:37797-37816 | Msa1446520:three_prime_UTR | 35.0% |
| CAGTTTGAACAAACAATGGA+CGG | + | tig0031371:38006-38025 | None:intergenic | 35.0% | |
| ACGTCAGTTTGAACAAACAA+TGG | + | tig0031371:38010-38029 | None:intergenic | 35.0% | |
| TGTTTGTTCAAACTGACGTT+TGG | - | tig0031371:38011-38030 | Msa1446520:CDS | 35.0% | |
| TTGTAACAATTGTGATTGGC+AGG | - | tig0031371:38123-38142 | Msa1446520:CDS | 35.0% | |
| !!! | TAGCACCATTGTCGTTTTTA+GGG | + | tig0031371:38258-38277 | None:intergenic | 35.0% |
| TGTTGTTAGCAAAGATGAAG+AGG | + | tig0031371:38369-38388 | None:intergenic | 35.0% | |
| CTACCTTAGTATAGTCAAAG+AGG | + | tig0031371:38399-38418 | None:intergenic | 35.0% | |
| GACATAAGTTTGGTCTCATA+AGG | + | tig0031371:38718-38737 | None:intergenic | 35.0% | |
| ! | CTTTTAATGCATGTCCTCAA+AGG | - | tig0031371:39013-39032 | Msa1446520:intron | 35.0% |
| !!! | ACACTTAGTTTTGACCTTTG+AGG | + | tig0031371:39030-39049 | None:intergenic | 35.0% |
| !!! | TTGGGTCGGTTATTTTGATT+CGG | + | tig0031371:39340-39359 | None:intergenic | 35.0% |
| TTATCAAAACGTCCCCATTT+GGG | + | tig0031371:39424-39443 | None:intergenic | 35.0% | |
| ATTATCAAAACGTCCCCATT+TGG | + | tig0031371:39425-39444 | None:intergenic | 35.0% | |
| !! | GGGGACGTTTTGATAATTAA+TGG | - | tig0031371:39428-39447 | Msa1446520:intron | 35.0% |
| ! | AAAGAACCGGATTTAGAACT+GGG | + | tig0031371:39493-39512 | None:intergenic | 35.0% |
| ! | TAAAGAACCGGATTTAGAAC+TGG | + | tig0031371:39494-39513 | None:intergenic | 35.0% |
| ! | GTATCATTCCACTGCAATTT+TGG | - | tig0031371:39577-39596 | Msa1446520:CDS | 35.0% |
| !!! | AATTTTGGTTCGTGATGGTA+GGG | - | tig0031371:39592-39611 | Msa1446520:CDS | 35.0% |
| CTTCGATACTAAGTTCAGTT+GGG | + | tig0031371:39673-39692 | None:intergenic | 35.0% | |
| AATGAGTGTGTGTTAAAAGG+TGG | + | tig0031371:39854-39873 | None:intergenic | 35.0% | |
| ! | ACTCATTTTCCATGAATCAG+AGG | - | tig0031371:39867-39886 | Msa1446520:CDS | 35.0% |
| GGGAACAACATATGATATTG+AGG | - | tig0031371:39928-39947 | Msa1446520:CDS | 35.0% | |
| TGATATTGAGGTTACTATGC+CGG | - | tig0031371:39940-39959 | Msa1446520:CDS | 35.0% | |
| AATAGCAGATAAAATCCAGG+AGG | + | tig0031371:39983-40002 | None:intergenic | 35.0% | |
| TGTATCCAAATTCCTTCACT+AGG | + | tig0031371:40025-40044 | None:intergenic | 35.0% | |
| CTCATAACAGAGATTAGAGA+GGG | + | tig0031371:40130-40149 | None:intergenic | 35.0% | |
| TCTCATAACAGAGATTAGAG+AGG | + | tig0031371:40131-40150 | None:intergenic | 35.0% | |
| TGAGAATTGGAAGAAGGAAG+AGG | + | tig0031371:37727-37746 | None:intergenic | 40.0% | |
| ! | TTTTAACGGTGGTTTCTCTG+GGG | + | tig0031371:37934-37953 | None:intergenic | 40.0% |
| !! | GTTTTAACGGTGGTTTCTCT+GGG | + | tig0031371:37935-37954 | None:intergenic | 40.0% |
| ! | AAACAATGGACGGAAAGTGT+TGG | + | tig0031371:37996-38015 | None:intergenic | 40.0% |
| TGTGATTGGCAGGAATTTGA+CGG | - | tig0031371:38133-38152 | Msa1446520:CDS | 40.0% | |
| AATGATAATCTGACGTCCGT+CGG | + | tig0031371:38203-38222 | None:intergenic | 40.0% | |
| ACGGACGTCAGATTATCATT+GGG | - | tig0031371:38203-38222 | Msa1446520:CDS | 40.0% | |
| !!! | GTAGCACCATTGTCGTTTTT+AGG | + | tig0031371:38259-38278 | None:intergenic | 40.0% |
| !!! | TACAGTTCGTTTGCCGTTTT+TGG | - | tig0031371:38276-38295 | Msa1446520:CDS | 40.0% |
| TTGGAACAGACTAATGATGC+TGG | - | tig0031371:38295-38314 | Msa1446520:CDS | 40.0% | |
| AGAACATTTCCTCAAATCCC+AGG | - | tig0031371:39146-39165 | Msa1446520:intron | 40.0% | |
| !!! | CAAGCTGAGGTTTTGATTTG+TGG | - | tig0031371:39245-39264 | Msa1446520:intron | 40.0% |
| !!! | TGGGTCGGTTATTTTGATTC+GGG | + | tig0031371:39339-39358 | None:intergenic | 40.0% |
| ! | ACATGGTAATGCTCCCAAAT+GGG | - | tig0031371:39408-39427 | Msa1446520:intron | 40.0% |
| ! | GATAATTAATGGAGCGGGTT+CGG | - | tig0031371:39439-39458 | Msa1446520:intron | 40.0% |
| ! | ATAATTAATGGAGCGGGTTC+GGG | - | tig0031371:39440-39459 | Msa1446520:intron | 40.0% |
| ATCACGAACCAAAATTGCAG+TGG | + | tig0031371:39588-39607 | None:intergenic | 40.0% | |
| !!! | ACTGCAATTTTGGTTCGTGA+TGG | - | tig0031371:39587-39606 | Msa1446520:CDS | 40.0% |
| !!! | CAATTTTGGTTCGTGATGGT+AGG | - | tig0031371:39591-39610 | Msa1446520:CDS | 40.0% |
| GCTTCGATACTAAGTTCAGT+TGG | + | tig0031371:39674-39693 | None:intergenic | 40.0% | |
| AAGGATTGTGGCTTCTACTT+CGG | - | tig0031371:39739-39758 | Msa1446520:CDS | 40.0% | |
| ! | CAAAAGCACGGTCAAAAGTT+GGG | - | tig0031371:39767-39786 | Msa1446520:CDS | 40.0% |
| TTCCATGAATCAGAGGTTGT+TGG | - | tig0031371:39874-39893 | Msa1446520:CDS | 40.0% | |
| GATATTGAGGTTACTATGCC+GGG | - | tig0031371:39941-39960 | Msa1446520:CDS | 40.0% | |
| AAGAAGGAAGAGGAGATAGG+TGG | + | tig0031371:37717-37736 | None:intergenic | 45.0% | |
| TGGAAGAAGGAAGAGGAGAT+AGG | + | tig0031371:37720-37739 | None:intergenic | 45.0% | |
| !! | GCAAAAAAGCATCGGCATTG+TGG | - | tig0031371:37805-37824 | Msa1446520:three_prime_UTR | 45.0% |
| GTGAAGAAGTTGCATGTGCA+TGG | + | tig0031371:37831-37850 | None:intergenic | 45.0% | |
| GACACTTTCCGTTGGGTAAA+GGG | + | tig0031371:37904-37923 | None:intergenic | 45.0% | |
| TCATGACGACACTTTCCGTT+GGG | + | tig0031371:37911-37930 | None:intergenic | 45.0% | |
| !! | GGTTTTAACGGTGGTTTCTC+TGG | + | tig0031371:37936-37955 | None:intergenic | 45.0% |
| CACCGTTAAAACCGATTGCA+CGG | - | tig0031371:37943-37962 | Msa1446520:CDS | 45.0% | |
| !! | AGCCGTGCAATCGGTTTTAA+CGG | + | tig0031371:37948-37967 | None:intergenic | 45.0% |
| !! | ACTGACGTTTGGTGTTCTTC+CGG | - | tig0031371:38022-38041 | Msa1446520:CDS | 45.0% |
| !! | TCCTTTAGGATTCACCGAAC+CGG | + | tig0031371:38044-38063 | None:intergenic | 45.0% |
| GTCTGGACAAGTGTTCCTTT+AGG | + | tig0031371:38058-38077 | None:intergenic | 45.0% | |
| AAAGGAACACTTGTCCAGAC+CGG | - | tig0031371:38058-38077 | Msa1446520:CDS | 45.0% | |
| ACCAATCATATTCTGCCCGA+CGG | - | tig0031371:38184-38203 | Msa1446520:CDS | 45.0% | |
| ATGATAATCTGACGTCCGTC+GGG | + | tig0031371:38202-38221 | None:intergenic | 45.0% | |
| GACGGACGTCAGATTATCAT+TGG | - | tig0031371:38202-38221 | Msa1446520:CDS | 45.0% | |
| CGGACGTCAGATTATCATTG+GGG | - | tig0031371:38204-38223 | Msa1446520:CDS | 45.0% | |
| GGACGTCAGATTATCATTGG+GGG | - | tig0031371:38205-38224 | Msa1446520:CDS | 45.0% | |
| ACATTTCCTCAAATCCCAGG+TGG | - | tig0031371:39149-39168 | Msa1446520:intron | 45.0% | |
| CATTTCCTCAAATCCCAGGT+GGG | - | tig0031371:39150-39169 | Msa1446520:intron | 45.0% | |
| ATTTCCTCAAATCCCAGGTG+GGG | - | tig0031371:39151-39170 | Msa1446520:intron | 45.0% | |
| CTGAGCTTGGATAACTCCTA+GGG | + | tig0031371:39178-39197 | None:intergenic | 45.0% | |
| AGTTATCCAAGCTCAGGTTC+AGG | - | tig0031371:39182-39201 | Msa1446520:intron | 45.0% | |
| GTTATCCAAGCTCAGGTTCA+GGG | - | tig0031371:39183-39202 | Msa1446520:intron | 45.0% | |
| TTATCCAAGCTCAGGTTCAG+GGG | - | tig0031371:39184-39203 | Msa1446520:intron | 45.0% | |
| !!! | GCTGAGGTTTTGATTTGTGG+TGG | - | tig0031371:39248-39267 | Msa1446520:intron | 45.0% |
| ! | ATTTGTGGTGGAGCTCCAAA+AGG | - | tig0031371:39260-39279 | Msa1446520:intron | 45.0% |
| TAACCGACCCAAATCCAACA+TGG | - | tig0031371:39348-39367 | Msa1446520:intron | 45.0% | |
| AACCGACCCAAATCCAACAT+GGG | - | tig0031371:39349-39368 | Msa1446520:intron | 45.0% | |
| AACCCATGTTGGATTTGGGT+CGG | + | tig0031371:39354-39373 | None:intergenic | 45.0% | |
| CCACAACCCATGTTGGATTT+GGG | + | tig0031371:39358-39377 | None:intergenic | 45.0% | |
| TCCACAACCCATGTTGGATT+TGG | + | tig0031371:39359-39378 | None:intergenic | 45.0% | |
| ATGCCTAGGGCTAGAGTAAT+GGG | - | tig0031371:39383-39402 | Msa1446520:intron | 45.0% | |
| ! | GACATGGTAATGCTCCCAAA+TGG | - | tig0031371:39407-39426 | Msa1446520:intron | 45.0% |
| ! | CATGGTAATGCTCCCAAATG+GGG | - | tig0031371:39409-39428 | Msa1446520:intron | 45.0% |
| ! | TAATTAATGGAGCGGGTTCG+GGG | - | tig0031371:39441-39460 | Msa1446520:intron | 45.0% |
| TACATTCGAGGCGTATGAGA+TGG | + | tig0031371:39560-39579 | None:intergenic | 45.0% | |
| GCAGTGGAATGATACATTCG+AGG | + | tig0031371:39572-39591 | None:intergenic | 45.0% | |
| AAGCGAGGTTCAAGGTAAGA+AGG | + | tig0031371:39704-39723 | None:intergenic | 45.0% | |
| GAATGTTCGTCCAAGGATTG+TGG | - | tig0031371:39727-39746 | Msa1446520:CDS | 45.0% | |
| GAAGTAGAAGCCACAATCCT+TGG | + | tig0031371:39740-39759 | None:intergenic | 45.0% | |
| ACTTCGGAACTGCAAAAGCA+CGG | - | tig0031371:39755-39774 | Msa1446520:CDS | 45.0% | |
| ! | GCAAAAGCACGGTCAAAAGT+TGG | - | tig0031371:39766-39785 | Msa1446520:CDS | 45.0% |
| CACCAACAACCTCTGATTCA+TGG | + | tig0031371:39879-39898 | None:intergenic | 45.0% | |
| GAATCAGAGGTTGTTGGTGT+TGG | - | tig0031371:39880-39899 | Msa1446520:CDS | 45.0% | |
| ! | AATCCAGGAGGTGCAAGAAT+AGG | + | tig0031371:39971-39990 | None:intergenic | 45.0% |
| AAGGAAGAGGAGATAGGTGG+TGG | + | tig0031371:37714-37733 | None:intergenic | 50.0% | |
| AATCACCACCACCCCATCTT+TGG | - | tig0031371:37754-37773 | Msa1446520:three_prime_UTR | 50.0% | |
| TACTTGCCATTGTCCAGCTG+CGG | + | tig0031371:37783-37802 | None:intergenic | 50.0% | |
| TCCAAGCTCCCTTTACCCAA+CGG | - | tig0031371:37893-37912 | Msa1446520:CDS | 50.0% | |
| CGACACTTTCCGTTGGGTAA+AGG | + | tig0031371:37905-37924 | None:intergenic | 50.0% | |
| GTCATGACGACACTTTCCGT+TGG | + | tig0031371:37912-37931 | None:intergenic | 50.0% | |
| !! | CGTGCAATCGGTTTTAACGG+TGG | + | tig0031371:37945-37964 | None:intergenic | 50.0% |
| AACCGATTGCACGGCTCATT+CGG | - | tig0031371:37952-37971 | Msa1446520:CDS | 50.0% | |
| !! | CGTTTGGTGTTCTTCCGGTT+CGG | - | tig0031371:38027-38046 | Msa1446520:CDS | 50.0% |
| !! | TCCGGTTCGGTGAATCCTAA+AGG | - | tig0031371:38040-38059 | Msa1446520:CDS | 50.0% |
| GATTGGCAGGAATTTGACGG+CGG | - | tig0031371:38136-38155 | Msa1446520:CDS | 50.0% | |
| GTCGGGCAGAATATGATTGG+TGG | + | tig0031371:38185-38204 | None:intergenic | 50.0% | |
| TCCGTCGGGCAGAATATGAT+TGG | + | tig0031371:38188-38207 | None:intergenic | 50.0% | |
| CCTGAGCTTGGATAACTCCT+AGG | + | tig0031371:39179-39198 | None:intergenic | 50.0% | |
| CCTAGGAGTTATCCAAGCTC+AGG | - | tig0031371:39176-39195 | Msa1446520:intron | 50.0% | |
| GCATCAAGGCGTGAGTTTCT+TGG | - | tig0031371:39296-39315 | Msa1446520:intron | 50.0% | |
| ! | CCCAAATCCAACATGGGTTG+TGG | - | tig0031371:39355-39374 | Msa1446520:intron | 50.0% |
| ATGGTCTCCACAACCCATGT+TGG | + | tig0031371:39365-39384 | None:intergenic | 50.0% | |
| CATTACTCTAGCCCTAGGCA+TGG | + | tig0031371:39384-39403 | None:intergenic | 50.0% | |
| CATGCCTAGGGCTAGAGTAA+TGG | - | tig0031371:39382-39401 | Msa1446520:intron | 50.0% | |
| TCACCCATTACTCTAGCCCT+AGG | + | tig0031371:39389-39408 | None:intergenic | 50.0% | |
| !! | GGCTAGAGTAATGGGTGACA+TGG | - | tig0031371:39391-39410 | Msa1446520:intron | 50.0% |
| !! | GCGAGACCCAGTTCTAAATC+CGG | - | tig0031371:39484-39503 | Msa1446520:intron | 50.0% |
| CGTGATGGTAGGGTTCTTGT+TGG | - | tig0031371:39602-39621 | Msa1446520:CDS | 50.0% | |
| GATGGTAGGGTTCTTGTTGG+TGG | - | tig0031371:39605-39624 | Msa1446520:CDS | 50.0% | |
| GGTGGTAGCAACCCTCATAT+TGG | - | tig0031371:39623-39642 | Msa1446520:CDS | 50.0% | |
| GGTGCAAGAATAGGTGAACC+CGG | + | tig0031371:39962-39981 | None:intergenic | 50.0% | |
| TCACCTATTCTTGCACCTCC+TGG | - | tig0031371:39965-39984 | Msa1446520:CDS | 50.0% | |
| ! | GAAGAGGAGATAGGTGGTGG+TGG | + | tig0031371:37711-37730 | None:intergenic | 55.0% |
| AGCTGCGGCTACCAAAGATG+GGG | + | tig0031371:37768-37787 | None:intergenic | 55.0% | |
| CAGCTGCGGCTACCAAAGAT+GGG | + | tig0031371:37769-37788 | None:intergenic | 55.0% | |
| TCCGTTGGGTAAAGGGAGCT+TGG | + | tig0031371:37897-37916 | None:intergenic | 55.0% | |
| GACCGAATGAGCCGTGCAAT+CGG | + | tig0031371:37957-37976 | None:intergenic | 55.0% | |
| GTCTCCATCGTTGTAGCCAC+CGG | + | tig0031371:38080-38099 | None:intergenic | 55.0% | |
| AGTACCCCTGAACCTGAGCT+TGG | + | tig0031371:39191-39210 | None:intergenic | 55.0% | |
| GGTTGTGGAGACCATGCCTA+GGG | - | tig0031371:39370-39389 | Msa1446520:intron | 55.0% | |
| CATTCGCGAAGCGAGGTTCA+AGG | + | tig0031371:39712-39731 | None:intergenic | 55.0% | |
| GCTTCGCGAATGTTCGTCCA+AGG | - | tig0031371:39720-39739 | Msa1446520:CDS | 55.0% | |
| !! | GAGGAGATAGGTGGTGGTGG+TGG | + | tig0031371:37708-37727 | None:intergenic | 60.0% |
| GGCTACCAAAGATGGGGTGG+TGG | + | tig0031371:37762-37781 | None:intergenic | 60.0% | |
| TGCGGCTACCAAAGATGGGG+TGG | + | tig0031371:37765-37784 | None:intergenic | 60.0% | |
| CCAGCTGCGGCTACCAAAGA+TGG | + | tig0031371:37770-37789 | None:intergenic | 60.0% | |
| ! | CCATCTTTGGTAGCCGCAGC+TGG | - | tig0031371:37767-37786 | Msa1446520:three_prime_UTR | 60.0% |
| TGGTAGCCGCAGCTGGACAA+TGG | - | tig0031371:37774-37793 | Msa1446520:three_prime_UTR | 60.0% | |
| GGAACACTTGTCCAGACCGG+TGG | - | tig0031371:38061-38080 | Msa1446520:CDS | 60.0% | |
| CATCGTTGTAGCCACCGGTC+TGG | + | tig0031371:38075-38094 | None:intergenic | 60.0% | |
| CAGACCGGTGGCTACAACGA+TGG | - | tig0031371:38073-38092 | Msa1446520:CDS | 60.0% | |
| !! | TTGACGGCGGACTTGCTGCT+CGG | - | tig0031371:38149-38168 | Msa1446520:CDS | 60.0% |
| AAATCCCAGGTGGGGACCCT+AGG | - | tig0031371:39159-39178 | Msa1446520:intron | 60.0% | |
| AACTCCTAGGGTCCCCACCT+GGG | + | tig0031371:39166-39185 | None:intergenic | 60.0% | |
| TAACTCCTAGGGTCCCCACC+TGG | + | tig0031371:39167-39186 | None:intergenic | 60.0% | |
| GGGTTGTGGAGACCATGCCT+AGG | - | tig0031371:39369-39388 | Msa1446520:intron | 60.0% | |
| GGGACAGCAGGGTGGGAATA+CGG | - | tig0031371:39461-39480 | Msa1446520:intron | 60.0% | |
| GGACAGCAGGGTGGGAATAC+GGG | - | tig0031371:39462-39481 | Msa1446520:intron | 60.0% | |
| GGACGAACATTCGCGAAGCG+AGG | + | tig0031371:39719-39738 | None:intergenic | 60.0% | |
| !! | GCGGACTTGCTGCTCGGAGA+TGG | - | tig0031371:38155-38174 | Msa1446520:CDS | 65.0% |
| GGGTCCCCACCTGGGATTTG+AGG | + | tig0031371:39158-39177 | None:intergenic | 65.0% | |
| ! | GAGCGGGTTCGGGGACAGCA+GGG | - | tig0031371:39450-39469 | Msa1446520:intron | 70.0% |
| GGGTTCGGGGACAGCAGGGT+GGG | - | tig0031371:39454-39473 | Msa1446520:intron | 70.0% | |
| ! | GGAGCGGGTTCGGGGACAGC+AGG | - | tig0031371:39449-39468 | Msa1446520:intron | 75.0% |
| CGGGTTCGGGGACAGCAGGG+TGG | - | tig0031371:39453-39472 | Msa1446520:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031371 | gene | 37642 | 40285 | 37642 | ID=Msa1446520;Name=Msa1446520 |
| tig0031371 | mRNA | 37642 | 40285 | 37642 | ID=Msa1446520-mRNA-1;Parent=Msa1446520;Name=Msa1446520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=59|1|1|1|1|1|2|231|544 |
| tig0031371 | exon | 37642 | 38793 | 37642 | ID=Msa1446520-mRNA-1:exon:15437;Parent=Msa1446520-mRNA-1 |
| tig0031371 | exon | 39513 | 40285 | 39513 | ID=Msa1446520-mRNA-1:exon:15436;Parent=Msa1446520-mRNA-1 |
| tig0031371 | five_prime_UTR | 40227 | 40285 | 40227 | ID=Msa1446520-mRNA-1:five_prime_utr;Parent=Msa1446520-mRNA-1 |
| tig0031371 | CDS | 39513 | 40226 | 39513 | ID=Msa1446520-mRNA-1:cds;Parent=Msa1446520-mRNA-1 |
| tig0031371 | CDS | 37873 | 38793 | 37873 | ID=Msa1446520-mRNA-1:cds;Parent=Msa1446520-mRNA-1 |
| tig0031371 | three_prime_UTR | 37642 | 37872 | 37642 | ID=Msa1446520-mRNA-1:three_prime_utr;Parent=Msa1446520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
