Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227340 | XP_003589379.1 | 95.948 | 543 | 20 | 2 | 3 | 544 | 2 | 543 | 0.0 | 1043 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227340 | sp|Q9FYG4|GLOX1_ARATH | 48.276 | 522 | 261 | 8 | 30 | 544 | 96 | 615 | 9.02e-162 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003040 | Msa1227340 | 0.952646 | 1.547113e-110 | -8.615850e-47 |
| Msa0036430 | Msa1227340 | 0.819825 | 9.477159e-53 | -8.615850e-47 |
| Msa0146920 | Msa1227340 | 0.949712 | 7.299107e-108 | -8.615850e-47 |
| Msa0176470 | Msa1227340 | 0.804931 | 1.704610e-49 | -8.615850e-47 |
| Msa0236110 | Msa1227340 | 0.828195 | 1.029179e-54 | -8.615850e-47 |
| Msa1227340 | Msa1420060 | 0.816865 | 4.436995e-52 | -8.615850e-47 |
| Msa1227340 | Msa1442630 | 0.808498 | 3.007460e-50 | -8.615850e-47 |
| Msa1227340 | Msa1446520 | 0.987869 | 7.705157e-172 | -8.615850e-47 |
| Msa0273990 | Msa1227340 | 0.808914 | 2.450567e-50 | -8.615850e-47 |
| Msa0314630 | Msa1227340 | 0.823201 | 1.573300e-53 | -8.615850e-47 |
| Msa0322830 | Msa1227340 | 0.837569 | 4.811590e-57 | -8.615850e-47 |
| Msa0322840 | Msa1227340 | 0.802536 | 5.355089e-49 | -8.615850e-47 |
| Msa0322860 | Msa1227340 | 0.825924 | 3.595595e-54 | -8.615850e-47 |
| Msa1113850 | Msa1227340 | 0.805342 | 1.398412e-49 | -8.615850e-47 |
| Msa0979510 | Msa1227340 | 0.823028 | 1.726556e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227340 | MtrunA17_Chr1g0155971 | 95.948 | 543 | 20 | 2 | 3 | 544 | 2 | 543 | 0.0 | 1043 |
| Msa1227340 | MtrunA17_Chr3g0142351 | 71.212 | 528 | 142 | 5 | 26 | 544 | 29 | 555 | 0.0 | 798 |
| Msa1227340 | MtrunA17_Chr6g0449561 | 73.062 | 516 | 134 | 3 | 34 | 544 | 1 | 516 | 0.0 | 796 |
| Msa1227340 | MtrunA17_Chr7g0273771 | 57.824 | 524 | 210 | 5 | 30 | 544 | 49 | 570 | 0.0 | 617 |
| Msa1227340 | MtrunA17_Chr5g0415971 | 49.638 | 552 | 237 | 12 | 30 | 543 | 43 | 591 | 0.0 | 534 |
| Msa1227340 | MtrunA17_Chr8g0390171 | 44.612 | 529 | 278 | 12 | 26 | 543 | 108 | 632 | 2.02e-152 | 450 |
| Msa1227340 | MtrunA17_Chr3g0116651 | 44.129 | 528 | 275 | 10 | 30 | 543 | 42 | 563 | 1.05e-149 | 441 |
| Msa1227340 | MtrunA17_Chr4g0008611 | 45.185 | 540 | 277 | 11 | 9 | 543 | 6 | 531 | 4.34e-148 | 436 |
| Msa1227340 | MtrunA17_Chr6g0486561 | 44.835 | 455 | 229 | 12 | 106 | 543 | 8 | 457 | 4.36e-124 | 372 |
| Msa1227340 | MtrunA17_Chr6g0486551 | 39.024 | 82 | 47 | 2 | 28 | 106 | 54 | 135 | 2.09e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227340 | AT1G75620.1 | 61.850 | 519 | 186 | 6 | 30 | 543 | 35 | 546 | 0.0 | 664 |
| Msa1227340 | AT1G19900.1 | 59.501 | 521 | 206 | 4 | 27 | 543 | 28 | 547 | 0.0 | 660 |
| Msa1227340 | AT3G57620.1 | 51.560 | 545 | 242 | 6 | 14 | 543 | 9 | 546 | 0.0 | 587 |
| Msa1227340 | AT1G14430.1 | 50.542 | 554 | 250 | 8 | 7 | 543 | 18 | 564 | 0.0 | 553 |
| Msa1227340 | AT5G19580.1 | 46.857 | 525 | 264 | 10 | 29 | 544 | 76 | 594 | 9.21e-165 | 481 |
| Msa1227340 | AT1G67290.1 | 48.276 | 522 | 261 | 8 | 30 | 544 | 96 | 615 | 9.17e-163 | 476 |
| Msa1227340 | AT3G53950.1 | 44.952 | 525 | 265 | 12 | 30 | 544 | 34 | 544 | 2.11e-146 | 432 |
Find 161 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCATTCCACTGCAATTT+TGG | 0.154597 | 8_2:+2456206 | Msa1227340:CDS |
| AGCAACATTGGATAAGAATT+TGG | 0.214373 | 8_2:+2456437 | Msa1227340:CDS |
| TCCACAACCCATGTTGGATT+TGG | 0.222957 | 8_2:-2455985 | None:intergenic |
| AAATTCCTAGTGAAGGAATT+TGG | 0.231449 | 8_2:+2456646 | Msa1227340:CDS |
| ATAATTAATGGAGCGGGTTC+GGG | 0.268444 | 8_2:+2456069 | Msa1227340:CDS |
| GATAATTAATGGAGCGGGTT+CGG | 0.293058 | 8_2:+2456068 | Msa1227340:CDS |
| GTGATTGTTGTTATGAGAAT+TGG | 0.326429 | 8_2:-2454366 | None:intergenic |
| CCACAACCCATGTTGGATTT+GGG | 0.333106 | 8_2:-2455984 | None:intergenic |
| GCATCAAGGCGTGAGTTTCT+TGG | 0.335410 | 8_2:+2455925 | Msa1227340:CDS |
| TCACCTATTCTTGCACCTCC+TGG | 0.339464 | 8_2:+2456594 | Msa1227340:CDS |
| ATTATCAAAACGTCCCCATT+TGG | 0.341185 | 8_2:-2456051 | None:intergenic |
| ATAAAATTGTAACCAATATG+AGG | 0.355050 | 8_2:-2456264 | None:intergenic |
| AACCGATTGCACGGCTCATT+CGG | 0.355271 | 8_2:+2454581 | Msa1227340:CDS |
| CACCAACAACCTCTGATTCA+TGG | 0.367118 | 8_2:-2456505 | None:intergenic |
| GACACTTTCCGTTGGGTAAA+GGG | 0.373285 | 8_2:-2454530 | None:intergenic |
| GGGACAGCAGGGTGGGAATA+CGG | 0.374378 | 8_2:+2456090 | Msa1227340:CDS |
| TAAAGAACCGGATTTAGAAC+TGG | 0.381761 | 8_2:-2456120 | None:intergenic |
| TACAAAACTAATAACGTAAT+CGG | 0.382791 | 8_2:+2456141 | Msa1227340:CDS |
| CGTGATGGTAGGGTTCTTGT+TGG | 0.385112 | 8_2:+2456231 | Msa1227340:CDS |
| GGAGCGGGTTCGGGGACAGC+AGG | 0.386297 | 8_2:+2456078 | Msa1227340:CDS |
| ACTGACGTTTGGTGTTCTTC+CGG | 0.387753 | 8_2:+2454651 | Msa1227340:CDS |
| AGTTATCCAAGCTCAGGTTC+AGG | 0.393608 | 8_2:+2455811 | Msa1227340:CDS |
| TGGAAGAAGGAAGAGGAGAT+AGG | 0.394304 | 8_2:-2454346 | None:intergenic |
| GAAAATGAGTGTGTGTTAAA+AGG | 0.395788 | 8_2:-2456483 | None:intergenic |
| CCATCTTTGGTAGCCGCAGC+TGG | 0.403295 | 8_2:+2454396 | Msa1227340:CDS |
| TTATCAAAACGTCCCCATTT+GGG | 0.409918 | 8_2:-2456050 | None:intergenic |
| ATGCCTAGGGCTAGAGTAAT+GGG | 0.418773 | 8_2:+2456012 | Msa1227340:CDS |
| GGTGGTAGCAACCCTCATAT+TGG | 0.419674 | 8_2:+2456252 | Msa1227340:CDS |
| AATCACCACCACCCCATCTT+TGG | 0.419887 | 8_2:+2454383 | Msa1227340:CDS |
| GGACAGCAGGGTGGGAATAC+GGG | 0.420291 | 8_2:+2456091 | Msa1227340:CDS |
| CCAGCTGCGGCTACCAAAGA+TGG | 0.424781 | 8_2:-2454396 | None:intergenic |
| GTCTGGACAAGTGTTCCTTT+AGG | 0.436088 | 8_2:-2454684 | None:intergenic |
| TTTGATTGTAGATTCTTCAA+TGG | 0.436753 | 8_2:-2455844 | None:intergenic |
| CGTTTGGTGTTCTTCCGGTT+CGG | 0.443827 | 8_2:+2454656 | Msa1227340:CDS |
| ATATTTGATCGTACTGACTT+TGG | 0.444418 | 8_2:+2454495 | Msa1227340:CDS |
| GGGTCCCCACCTGGGATTTG+AGG | 0.445198 | 8_2:-2455784 | None:intergenic |
| AAGGATTGTGGCTTCTACTT+CGG | 0.446379 | 8_2:+2456368 | Msa1227340:CDS |
| CGACACTTTCCGTTGGGTAA+AGG | 0.450947 | 8_2:-2454531 | None:intergenic |
| CATCGTTGTAGCCACCGGTC+TGG | 0.451241 | 8_2:-2454701 | None:intergenic |
| GACGGACGTCAGATTATCAT+TGG | 0.452067 | 8_2:+2454831 | Msa1227340:CDS |
| AAAAGTTGTTGCTTAATGCT+TGG | 0.455257 | 8_2:+2456848 | Msa1227340:three_prime_UTR |
| GCAAAAGCACGGTCAAAAGT+TGG | 0.456115 | 8_2:+2456395 | Msa1227340:CDS |
| GCTTCGATACTAAGTTCAGT+TGG | 0.459077 | 8_2:-2456300 | None:intergenic |
| ACATGGTAATGCTCCCAAAT+GGG | 0.461570 | 8_2:+2456037 | Msa1227340:CDS |
| GAAGTAGAAGCCACAATCCT+TGG | 0.461659 | 8_2:-2456366 | None:intergenic |
| CCCAAATCCAACATGGGTTG+TGG | 0.465400 | 8_2:+2455984 | Msa1227340:CDS |
| ATGATAATCTGACGTCCGTC+GGG | 0.466571 | 8_2:-2454828 | None:intergenic |
| CAAAAGCACGGTCAAAAGTT+GGG | 0.467287 | 8_2:+2456396 | Msa1227340:CDS |
| CCTGAGCTTGGATAACTCCT+AGG | 0.467424 | 8_2:-2455805 | None:intergenic |
| TCCGTTGGGTAAAGGGAGCT+TGG | 0.468205 | 8_2:-2454523 | None:intergenic |
| TTGTAACAATTGTGATTGGC+AGG | 0.468700 | 8_2:+2454752 | Msa1227340:CDS |
| GAGGAGATAGGTGGTGGTGG+TGG | 0.471284 | 8_2:-2454334 | None:intergenic |
| GGTCATTGTTATTGTCACTA+AGG | 0.471923 | 8_2:-2454313 | None:intergenic |
| GACCGAATGAGCCGTGCAAT+CGG | 0.472666 | 8_2:-2454583 | None:intergenic |
| GACATGGTAATGCTCCCAAA+TGG | 0.475435 | 8_2:+2456036 | Msa1227340:CDS |
| TGTGATTGGCAGGAATTTGA+CGG | 0.477752 | 8_2:+2454762 | Msa1227340:CDS |
| GTTATCCAAGCTCAGGTTCA+GGG | 0.478365 | 8_2:+2455812 | Msa1227340:CDS |
| TCCGGTTCGGTGAATCCTAA+AGG | 0.479007 | 8_2:+2454669 | Msa1227340:CDS |
| AAATCCCAGGTGGGGACCCT+AGG | 0.479903 | 8_2:+2455788 | Msa1227340:CDS |
| CGGGTTCGGGGACAGCAGGG+TGG | 0.481834 | 8_2:+2456082 | Msa1227340:CDS |
| CATGCCTAGGGCTAGAGTAA+TGG | 0.483226 | 8_2:+2456011 | Msa1227340:CDS |
| AATCCAGGAGGTGCAAGAAT+AGG | 0.486846 | 8_2:-2456597 | None:intergenic |
| AAACAAAGTGAATAATGTGC+AGG | 0.487243 | 8_2:+2456536 | Msa1227340:CDS |
| TAACTCCTAGGGTCCCCACC+TGG | 0.487338 | 8_2:-2455793 | None:intergenic |
| TGATATTGAGGTTACTATGC+CGG | 0.487729 | 8_2:+2456569 | Msa1227340:CDS |
| TGTTTGTTCAAACTGACGTT+TGG | 0.489066 | 8_2:+2454640 | Msa1227340:CDS |
| CAGCTGCGGCTACCAAAGAT+GGG | 0.491660 | 8_2:-2454395 | None:intergenic |
| TTTGGTATATGTTACGATGT+TGG | 0.495056 | 8_2:+2456455 | Msa1227340:CDS |
| GTCTCCATCGTTGTAGCCAC+CGG | 0.495723 | 8_2:-2454706 | None:intergenic |
| TCCTTTAGGATTCACCGAAC+CGG | 0.496066 | 8_2:-2454670 | None:intergenic |
| AAGGAAGAGGAGATAGGTGG+TGG | 0.499045 | 8_2:-2454340 | None:intergenic |
| GGGTTCGGGGACAGCAGGGT+GGG | 0.499402 | 8_2:+2456083 | Msa1227340:CDS |
| CTTCGATACTAAGTTCAGTT+GGG | 0.500695 | 8_2:-2456299 | None:intergenic |
| ATACTTGTAACAATTGTGAT+TGG | 0.501433 | 8_2:+2454748 | Msa1227340:CDS |
| AGTACCCCTGAACCTGAGCT+TGG | 0.503306 | 8_2:-2455817 | None:intergenic |
| ACGGACGTCAGATTATCATT+GGG | 0.504627 | 8_2:+2454832 | Msa1227340:CDS |
| TCATGACGACACTTTCCGTT+GGG | 0.507837 | 8_2:-2454537 | None:intergenic |
| ATTTGTGGTGGAGCTCCAAA+AGG | 0.507956 | 8_2:+2455889 | Msa1227340:CDS |
| TGAGAATTGGAAGAAGGAAG+AGG | 0.508192 | 8_2:-2454353 | None:intergenic |
| CATTCGCGAAGCGAGGTTCA+AGG | 0.515507 | 8_2:-2456338 | None:intergenic |
| TGTATCCAAATTCCTTCACT+AGG | 0.522963 | 8_2:-2456651 | None:intergenic |
| TATCAAACATACGAATGGTT+CGG | 0.523167 | 8_2:-2454728 | None:intergenic |
| TATCCTCTTTGACTATACTA+AGG | 0.523749 | 8_2:+2455022 | Msa1227340:CDS |
| TTCCATGAATCAGAGGTTGT+TGG | 0.524137 | 8_2:+2456503 | Msa1227340:CDS |
| TTGTTATGAGAATTGGAAGA+AGG | 0.524866 | 8_2:-2454359 | None:intergenic |
| GAAGAGGAGATAGGTGGTGG+TGG | 0.525822 | 8_2:-2454337 | None:intergenic |
| GAATGTTCGTCCAAGGATTG+TGG | 0.526224 | 8_2:+2456356 | Msa1227340:CDS |
| ATCAAAGTTTATACAAGCTG+AGG | 0.526362 | 8_2:+2455861 | Msa1227340:CDS |
| TCCGTCGGGCAGAATATGAT+TGG | 0.527723 | 8_2:-2454814 | None:intergenic |
| ATTTCAAGTAAAAGCAACAT+TGG | 0.531009 | 8_2:+2456425 | Msa1227340:CDS |
| AAGCGAGGTTCAAGGTAAGA+AGG | 0.532513 | 8_2:-2456330 | None:intergenic |
| GCGGACTTGCTGCTCGGAGA+TGG | 0.534369 | 8_2:+2454784 | Msa1227340:CDS |
| GATATTGAGGTTACTATGCC+GGG | 0.535099 | 8_2:+2456570 | Msa1227340:CDS |
| CAGACCGGTGGCTACAACGA+TGG | 0.536809 | 8_2:+2454702 | Msa1227340:CDS |
| GAATCAGAGGTTGTTGGTGT+TGG | 0.537446 | 8_2:+2456509 | Msa1227340:CDS |
| CCTAGGAGTTATCCAAGCTC+AGG | 0.540194 | 8_2:+2455805 | Msa1227340:CDS |
| AACTCCTAGGGTCCCCACCT+GGG | 0.542708 | 8_2:-2455792 | None:intergenic |
| GTCATGACGACACTTTCCGT+TGG | 0.543988 | 8_2:-2454538 | None:intergenic |
| GCGAGACCCAGTTCTAAATC+CGG | 0.547300 | 8_2:+2456113 | Msa1227340:CDS |
| GGGAACAACATATGATATTG+AGG | 0.552074 | 8_2:+2456557 | Msa1227340:CDS |
| TGTTGTTAGCAAAGATGAAG+AGG | 0.554181 | 8_2:-2454995 | None:intergenic |
| TACATTCGAGGCGTATGAGA+TGG | 0.557294 | 8_2:-2456186 | None:intergenic |
| TTGACGGCGGACTTGCTGCT+CGG | 0.557612 | 8_2:+2454778 | Msa1227340:CDS |
| CTACCTTAGTATAGTCAAAG+AGG | 0.562748 | 8_2:-2455025 | None:intergenic |
| ACAAATAGCAGATAAAATCC+AGG | 0.565016 | 8_2:-2456612 | None:intergenic |
| AACCCATGTTGGATTTGGGT+CGG | 0.566702 | 8_2:-2455980 | None:intergenic |
| TAAAATTGTAACCAATATGA+GGG | 0.567574 | 8_2:-2456263 | None:intergenic |
| AAAGAACCGGATTTAGAACT+GGG | 0.569963 | 8_2:-2456119 | None:intergenic |
| TTGGAACAGACTAATGATGC+TGG | 0.570563 | 8_2:+2454924 | Msa1227340:CDS |
| CATAAAGAAATTCCTAGTGA+AGG | 0.570695 | 8_2:+2456639 | Msa1227340:CDS |
| CACCGTTAAAACCGATTGCA+CGG | 0.572292 | 8_2:+2454572 | Msa1227340:CDS |
| AAACAATGGACGGAAAGTGT+TGG | 0.572611 | 8_2:-2454622 | None:intergenic |
| TCACCCATTACTCTAGCCCT+AGG | 0.572852 | 8_2:-2456015 | None:intergenic |
| GCTTCGCGAATGTTCGTCCA+AGG | 0.576507 | 8_2:+2456349 | Msa1227340:CDS |
| GATGGTAGGGTTCTTGTTGG+TGG | 0.579283 | 8_2:+2456234 | Msa1227340:CDS |
| AATGATAATCTGACGTCCGT+CGG | 0.588364 | 8_2:-2454829 | None:intergenic |
| GTCGGGCAGAATATGATTGG+TGG | 0.588441 | 8_2:-2454811 | None:intergenic |
| TAATTAATGGAGCGGGTTCG+GGG | 0.591461 | 8_2:+2456070 | Msa1227340:CDS |
| GGCTACCAAAGATGGGGTGG+TGG | 0.592290 | 8_2:-2454388 | None:intergenic |
| GGCTAGAGTAATGGGTGACA+TGG | 0.592897 | 8_2:+2456020 | Msa1227340:CDS |
| GGGTTGTGGAGACCATGCCT+AGG | 0.592998 | 8_2:+2455998 | Msa1227340:CDS |
| GAGCGGGTTCGGGGACAGCA+GGG | 0.594837 | 8_2:+2456079 | Msa1227340:CDS |
| TAACCGACCCAAATCCAACA+TGG | 0.597315 | 8_2:+2455977 | Msa1227340:CDS |
| AGAACATTTCCTCAAATCCC+AGG | 0.598634 | 8_2:+2455775 | Msa1227340:CDS |
| TCCAAGCTCCCTTTACCCAA+CGG | 0.604138 | 8_2:+2454522 | Msa1227340:CDS |
| AAAGGAACACTTGTCCAGAC+CGG | 0.605527 | 8_2:+2454687 | Msa1227340:CDS |
| TGGTAGCCGCAGCTGGACAA+TGG | 0.606010 | 8_2:+2454403 | Msa1227340:CDS |
| TGCGGCTACCAAAGATGGGG+TGG | 0.606891 | 8_2:-2454391 | None:intergenic |
| GCAGTGGAATGATACATTCG+AGG | 0.606915 | 8_2:-2456198 | None:intergenic |
| CAGTTTGAACAAACAATGGA+CGG | 0.608679 | 8_2:-2454632 | None:intergenic |
| AACAAAGTGAATAATGTGCA+GGG | 0.608995 | 8_2:+2456537 | Msa1227340:CDS |
| AAGAAGGAAGAGGAGATAGG+TGG | 0.613810 | 8_2:-2454343 | None:intergenic |
| CTGAGCTTGGATAACTCCTA+GGG | 0.614436 | 8_2:-2455804 | None:intergenic |
| ACGTCAGTTTGAACAAACAA+TGG | 0.614768 | 8_2:-2454636 | None:intergenic |
| CAAATTTAACTAGAATGTAG+TGG | 0.615118 | 8_2:+2455750 | Msa1227340:intron |
| GTGAAGAAGTTGCATGTGCA+TGG | 0.615355 | 8_2:-2454457 | None:intergenic |
| ACAAGTATCAAACATACGAA+TGG | 0.619375 | 8_2:-2454733 | None:intergenic |
| CTCATAACAGAGATTAGAGA+GGG | 0.620700 | 8_2:-2456756 | None:intergenic |
| GGTTGTGGAGACCATGCCTA+GGG | 0.621634 | 8_2:+2455999 | Msa1227340:CDS |
| GGACGAACATTCGCGAAGCG+AGG | 0.625391 | 8_2:-2456345 | None:intergenic |
| ATCACGAACCAAAATTGCAG+TGG | 0.632842 | 8_2:-2456214 | None:intergenic |
| ATGGTCTCCACAACCCATGT+TGG | 0.632893 | 8_2:-2455991 | None:intergenic |
| CATTTCCTCAAATCCCAGGT+GGG | 0.633836 | 8_2:+2455779 | Msa1227340:CDS |
| ACCAATCATATTCTGCCCGA+CGG | 0.637737 | 8_2:+2454813 | Msa1227340:CDS |
| AACCGACCCAAATCCAACAT+GGG | 0.637839 | 8_2:+2455978 | Msa1227340:CDS |
| ATTTCCTCAAATCCCAGGTG+GGG | 0.639095 | 8_2:+2455780 | Msa1227340:CDS |
| GGTGCAAGAATAGGTGAACC+CGG | 0.641982 | 8_2:-2456588 | None:intergenic |
| TTATCCAAGCTCAGGTTCAG+GGG | 0.643701 | 8_2:+2455813 | Msa1227340:CDS |
| ACTTCGGAACTGCAAAAGCA+CGG | 0.645621 | 8_2:+2456384 | Msa1227340:CDS |
| CATGGTAATGCTCCCAAATG+GGG | 0.649064 | 8_2:+2456038 | Msa1227340:CDS |
| CATTACTCTAGCCCTAGGCA+TGG | 0.651243 | 8_2:-2456010 | None:intergenic |
| AGCTGCGGCTACCAAAGATG+GGG | 0.651533 | 8_2:-2454394 | None:intergenic |
| CGGACGTCAGATTATCATTG+GGG | 0.661128 | 8_2:+2454833 | Msa1227340:CDS |
| GGAACACTTGTCCAGACCGG+TGG | 0.665244 | 8_2:+2454690 | Msa1227340:CDS |
| TACTTGCCATTGTCCAGCTG+CGG | 0.669654 | 8_2:-2454409 | None:intergenic |
| TCTCATAACAGAGATTAGAG+AGG | 0.679213 | 8_2:-2456757 | None:intergenic |
| ACATTTCCTCAAATCCCAGG+TGG | 0.682481 | 8_2:+2455778 | Msa1227340:CDS |
| AATGAGTGTGTGTTAAAAGG+TGG | 0.707159 | 8_2:-2456480 | None:intergenic |
| GGACGTCAGATTATCATTGG+GGG | 0.730353 | 8_2:+2454834 | Msa1227340:CDS |
| AATAGCAGATAAAATCCAGG+AGG | 0.735992 | 8_2:-2456609 | None:intergenic |
| GATTGGCAGGAATTTGACGG+CGG | 0.737585 | 8_2:+2454765 | Msa1227340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTGGTTTTAATTATTATT+TGG | + | chr8_2:2455126-2455145 | Msa1227340:intron | 15.0% |
| !!! | TAAATAACTGTGTTTTATTA+TGG | + | chr8_2:2455436-2455455 | Msa1227340:intron | 15.0% |
| !!! | TAGTAAATGTTTTTCATTTG+TGG | + | chr8_2:2455109-2455128 | Msa1227340:intron | 20.0% |
| !! | TCAAATTCATAATTTGAACA+TGG | + | chr8_2:2455303-2455322 | Msa1227340:intron | 20.0% |
| !!! | TTATTAGTTTTGTAAAGAAC+CGG | - | chr8_2:2456135-2456154 | None:intergenic | 20.0% |
| !! | TACAAAACTAATAACGTAAT+CGG | + | chr8_2:2456141-2456160 | Msa1227340:CDS | 20.0% |
| !! | TAAAATTGTAACCAATATGA+GGG | - | chr8_2:2456266-2456285 | None:intergenic | 20.0% |
| !! | ATAAAATTGTAACCAATATG+AGG | - | chr8_2:2456267-2456286 | None:intergenic | 20.0% |
| !!! | ATAAAAAAGTACAAACACTA+GGG | - | chr8_2:2456878-2456897 | None:intergenic | 20.0% |
| !!! | TATAAAAAAGTACAAACACT+AGG | - | chr8_2:2456879-2456898 | None:intergenic | 20.0% |
| ! | ATACTTGTAACAATTGTGAT+TGG | + | chr8_2:2454748-2454767 | Msa1227340:CDS | 25.0% |
| !! | ACTTTGCATTATGTTTGTTA+AGG | + | chr8_2:2455055-2455074 | Msa1227340:intron | 25.0% |
| !!! | CTGTGTTTTATTATGGTATA+TGG | + | chr8_2:2455443-2455462 | Msa1227340:intron | 25.0% |
| !!! | ACTTTTAATTTTTGCTACGT+TGG | + | chr8_2:2455701-2455720 | Msa1227340:intron | 25.0% |
| ! | CAAATTTAACTAGAATGTAG+TGG | + | chr8_2:2455750-2455769 | Msa1227340:intron | 25.0% |
| ! | TTTGATTGTAGATTCTTCAA+TGG | - | chr8_2:2455847-2455866 | None:intergenic | 25.0% |
| !! | ATTTCAAGTAAAAGCAACAT+TGG | + | chr8_2:2456425-2456444 | Msa1227340:CDS | 25.0% |
| !! | AATTTTCAAATGCAATTGTG+TGG | + | chr8_2:2456682-2456701 | Msa1227340:exon | 25.0% |
| !!! | AAGCAACAACTTTTTTTTAG+AGG | - | chr8_2:2456842-2456861 | None:intergenic | 25.0% |
| TTGTTATGAGAATTGGAAGA+AGG | - | chr8_2:2454362-2454381 | None:intergenic | 30.0% | |
| ! | GTGATTGTTGTTATGAGAAT+TGG | - | chr8_2:2454369-2454388 | None:intergenic | 30.0% |
| !! | ATATTTGATCGTACTGACTT+TGG | + | chr8_2:2454495-2454514 | Msa1227340:CDS | 30.0% |
| TATCAAACATACGAATGGTT+CGG | - | chr8_2:2454731-2454750 | None:intergenic | 30.0% | |
| ACAAGTATCAAACATACGAA+TGG | - | chr8_2:2454736-2454755 | None:intergenic | 30.0% | |
| ! | TTTTACCCTAAAAACGACAA+TGG | + | chr8_2:2454879-2454898 | Msa1227340:CDS | 30.0% |
| ! | TCATTAGTCTGTTCCAAAAA+CGG | - | chr8_2:2454921-2454940 | None:intergenic | 30.0% |
| !! | TCCATTTGTTTTTCTCAATG+TGG | + | chr8_2:2454965-2454984 | Msa1227340:CDS | 30.0% |
| TCCACATTGAGAAAAACAAA+TGG | - | chr8_2:2454969-2454988 | None:intergenic | 30.0% | |
| !! | TTTGTTTTTCTCAATGTGGA+TGG | + | chr8_2:2454969-2454988 | Msa1227340:CDS | 30.0% |
| TATCCTCTTTGACTATACTA+AGG | + | chr8_2:2455022-2455041 | Msa1227340:CDS | 30.0% | |
| ACATAAGTTTGGTCTCATAA+GGG | - | chr8_2:2455346-2455365 | None:intergenic | 30.0% | |
| TTCGAAGAAAGACATAAGTT+TGG | - | chr8_2:2455357-2455376 | None:intergenic | 30.0% | |
| AAACTTATGTCTTTCTTCGA+AGG | + | chr8_2:2455356-2455375 | Msa1227340:intron | 30.0% | |
| ATCAAAGTTTATACAAGCTG+AGG | + | chr8_2:2455861-2455880 | Msa1227340:CDS | 30.0% | |
| ! | GCTTTTTGATAAGATCCTTT+TGG | - | chr8_2:2455907-2455926 | None:intergenic | 30.0% |
| !! | GATCTTATCAAAAAGCATCA+AGG | + | chr8_2:2455911-2455930 | Msa1227340:CDS | 30.0% |
| !! | CGTTTTGATAATTAATGGAG+CGG | + | chr8_2:2456062-2456081 | Msa1227340:CDS | 30.0% |
| !! | GTTTTGATAATTAATGGAGC+GGG | + | chr8_2:2456063-2456082 | Msa1227340:CDS | 30.0% |
| AGCAACATTGGATAAGAATT+TGG | + | chr8_2:2456437-2456456 | Msa1227340:CDS | 30.0% | |
| TTTGGTATATGTTACGATGT+TGG | + | chr8_2:2456455-2456474 | Msa1227340:CDS | 30.0% | |
| GAAAATGAGTGTGTGTTAAA+AGG | - | chr8_2:2456486-2456505 | None:intergenic | 30.0% | |
| AAACAAAGTGAATAATGTGC+AGG | + | chr8_2:2456536-2456555 | Msa1227340:CDS | 30.0% | |
| AACAAAGTGAATAATGTGCA+GGG | + | chr8_2:2456537-2456556 | Msa1227340:CDS | 30.0% | |
| ACAAATAGCAGATAAAATCC+AGG | - | chr8_2:2456615-2456634 | None:intergenic | 30.0% | |
| !! | TGGATTTTATCTGCTATTTG+TGG | + | chr8_2:2456614-2456633 | Msa1227340:CDS | 30.0% |
| CATAAAGAAATTCCTAGTGA+AGG | + | chr8_2:2456639-2456658 | Msa1227340:CDS | 30.0% | |
| AAATTCCTAGTGAAGGAATT+TGG | + | chr8_2:2456646-2456665 | Msa1227340:CDS | 30.0% | |
| ! | AAAAGTTGTTGCTTAATGCT+TGG | + | chr8_2:2456848-2456867 | Msa1227340:three_prime_UTR | 30.0% |
| ! | GGTCATTGTTATTGTCACTA+AGG | - | chr8_2:2454316-2454335 | None:intergenic | 35.0% |
| ! | CAAGTACTGCAAAAAAGCAT+CGG | + | chr8_2:2454426-2454445 | Msa1227340:CDS | 35.0% |
| CAGTTTGAACAAACAATGGA+CGG | - | chr8_2:2454635-2454654 | None:intergenic | 35.0% | |
| ACGTCAGTTTGAACAAACAA+TGG | - | chr8_2:2454639-2454658 | None:intergenic | 35.0% | |
| TGTTTGTTCAAACTGACGTT+TGG | + | chr8_2:2454640-2454659 | Msa1227340:CDS | 35.0% | |
| TTGTAACAATTGTGATTGGC+AGG | + | chr8_2:2454752-2454771 | Msa1227340:CDS | 35.0% | |
| !!! | TAGCACCATTGTCGTTTTTA+GGG | - | chr8_2:2454887-2454906 | None:intergenic | 35.0% |
| TGTTGTTAGCAAAGATGAAG+AGG | - | chr8_2:2454998-2455017 | None:intergenic | 35.0% | |
| CTACCTTAGTATAGTCAAAG+AGG | - | chr8_2:2455028-2455047 | None:intergenic | 35.0% | |
| GACATAAGTTTGGTCTCATA+AGG | - | chr8_2:2455347-2455366 | None:intergenic | 35.0% | |
| ! | CTTTTAATGCATGTCCTCAA+AGG | + | chr8_2:2455642-2455661 | Msa1227340:intron | 35.0% |
| !!! | ACACTTAGTTTTGACCTTTG+AGG | - | chr8_2:2455659-2455678 | None:intergenic | 35.0% |
| !!! | TTGGGTCGGTTATTTTGATT+CGG | - | chr8_2:2455969-2455988 | None:intergenic | 35.0% |
| TTATCAAAACGTCCCCATTT+GGG | - | chr8_2:2456053-2456072 | None:intergenic | 35.0% | |
| ATTATCAAAACGTCCCCATT+TGG | - | chr8_2:2456054-2456073 | None:intergenic | 35.0% | |
| !! | GGGGACGTTTTGATAATTAA+TGG | + | chr8_2:2456057-2456076 | Msa1227340:CDS | 35.0% |
| ! | AAAGAACCGGATTTAGAACT+GGG | - | chr8_2:2456122-2456141 | None:intergenic | 35.0% |
| ! | TAAAGAACCGGATTTAGAAC+TGG | - | chr8_2:2456123-2456142 | None:intergenic | 35.0% |
| ! | GTATCATTCCACTGCAATTT+TGG | + | chr8_2:2456206-2456225 | Msa1227340:CDS | 35.0% |
| !!! | AATTTTGGTTCGTGATGGTA+GGG | + | chr8_2:2456221-2456240 | Msa1227340:CDS | 35.0% |
| CTTCGATACTAAGTTCAGTT+GGG | - | chr8_2:2456302-2456321 | None:intergenic | 35.0% | |
| AATGAGTGTGTGTTAAAAGG+TGG | - | chr8_2:2456483-2456502 | None:intergenic | 35.0% | |
| ! | ACTCATTTTCCATGAATCAG+AGG | + | chr8_2:2456496-2456515 | Msa1227340:CDS | 35.0% |
| GGGAACAACATATGATATTG+AGG | + | chr8_2:2456557-2456576 | Msa1227340:CDS | 35.0% | |
| TGATATTGAGGTTACTATGC+CGG | + | chr8_2:2456569-2456588 | Msa1227340:CDS | 35.0% | |
| AATAGCAGATAAAATCCAGG+AGG | - | chr8_2:2456612-2456631 | None:intergenic | 35.0% | |
| TGTATCCAAATTCCTTCACT+AGG | - | chr8_2:2456654-2456673 | None:intergenic | 35.0% | |
| CTCATAACAGAGATTAGAGA+GGG | - | chr8_2:2456759-2456778 | None:intergenic | 35.0% | |
| TCTCATAACAGAGATTAGAG+AGG | - | chr8_2:2456760-2456779 | None:intergenic | 35.0% | |
| TGAGAATTGGAAGAAGGAAG+AGG | - | chr8_2:2454356-2454375 | None:intergenic | 40.0% | |
| ! | TTTTAACGGTGGTTTCTCTG+GGG | - | chr8_2:2454563-2454582 | None:intergenic | 40.0% |
| !! | GTTTTAACGGTGGTTTCTCT+GGG | - | chr8_2:2454564-2454583 | None:intergenic | 40.0% |
| ! | AAACAATGGACGGAAAGTGT+TGG | - | chr8_2:2454625-2454644 | None:intergenic | 40.0% |
| TGTGATTGGCAGGAATTTGA+CGG | + | chr8_2:2454762-2454781 | Msa1227340:CDS | 40.0% | |
| AATGATAATCTGACGTCCGT+CGG | - | chr8_2:2454832-2454851 | None:intergenic | 40.0% | |
| ACGGACGTCAGATTATCATT+GGG | + | chr8_2:2454832-2454851 | Msa1227340:CDS | 40.0% | |
| !!! | GTAGCACCATTGTCGTTTTT+AGG | - | chr8_2:2454888-2454907 | None:intergenic | 40.0% |
| !!! | TACAGTTCGTTTGCCGTTTT+TGG | + | chr8_2:2454905-2454924 | Msa1227340:CDS | 40.0% |
| TTGGAACAGACTAATGATGC+TGG | + | chr8_2:2454924-2454943 | Msa1227340:CDS | 40.0% | |
| AGAACATTTCCTCAAATCCC+AGG | + | chr8_2:2455775-2455794 | Msa1227340:CDS | 40.0% | |
| !!! | CAAGCTGAGGTTTTGATTTG+TGG | + | chr8_2:2455874-2455893 | Msa1227340:CDS | 40.0% |
| !!! | TGGGTCGGTTATTTTGATTC+GGG | - | chr8_2:2455968-2455987 | None:intergenic | 40.0% |
| ! | ACATGGTAATGCTCCCAAAT+GGG | + | chr8_2:2456037-2456056 | Msa1227340:CDS | 40.0% |
| ! | GATAATTAATGGAGCGGGTT+CGG | + | chr8_2:2456068-2456087 | Msa1227340:CDS | 40.0% |
| ! | ATAATTAATGGAGCGGGTTC+GGG | + | chr8_2:2456069-2456088 | Msa1227340:CDS | 40.0% |
| ATCACGAACCAAAATTGCAG+TGG | - | chr8_2:2456217-2456236 | None:intergenic | 40.0% | |
| !!! | ACTGCAATTTTGGTTCGTGA+TGG | + | chr8_2:2456216-2456235 | Msa1227340:CDS | 40.0% |
| !!! | CAATTTTGGTTCGTGATGGT+AGG | + | chr8_2:2456220-2456239 | Msa1227340:CDS | 40.0% |
| GCTTCGATACTAAGTTCAGT+TGG | - | chr8_2:2456303-2456322 | None:intergenic | 40.0% | |
| AAGGATTGTGGCTTCTACTT+CGG | + | chr8_2:2456368-2456387 | Msa1227340:CDS | 40.0% | |
| ! | CAAAAGCACGGTCAAAAGTT+GGG | + | chr8_2:2456396-2456415 | Msa1227340:CDS | 40.0% |
| TTCCATGAATCAGAGGTTGT+TGG | + | chr8_2:2456503-2456522 | Msa1227340:CDS | 40.0% | |
| GATATTGAGGTTACTATGCC+GGG | + | chr8_2:2456570-2456589 | Msa1227340:CDS | 40.0% | |
| AAGAAGGAAGAGGAGATAGG+TGG | - | chr8_2:2454346-2454365 | None:intergenic | 45.0% | |
| TGGAAGAAGGAAGAGGAGAT+AGG | - | chr8_2:2454349-2454368 | None:intergenic | 45.0% | |
| !! | GCAAAAAAGCATCGGCATTG+TGG | + | chr8_2:2454434-2454453 | Msa1227340:CDS | 45.0% |
| GTGAAGAAGTTGCATGTGCA+TGG | - | chr8_2:2454460-2454479 | None:intergenic | 45.0% | |
| GACACTTTCCGTTGGGTAAA+GGG | - | chr8_2:2454533-2454552 | None:intergenic | 45.0% | |
| TCATGACGACACTTTCCGTT+GGG | - | chr8_2:2454540-2454559 | None:intergenic | 45.0% | |
| !! | GGTTTTAACGGTGGTTTCTC+TGG | - | chr8_2:2454565-2454584 | None:intergenic | 45.0% |
| CACCGTTAAAACCGATTGCA+CGG | + | chr8_2:2454572-2454591 | Msa1227340:CDS | 45.0% | |
| !! | AGCCGTGCAATCGGTTTTAA+CGG | - | chr8_2:2454577-2454596 | None:intergenic | 45.0% |
| !! | ACTGACGTTTGGTGTTCTTC+CGG | + | chr8_2:2454651-2454670 | Msa1227340:CDS | 45.0% |
| !! | TCCTTTAGGATTCACCGAAC+CGG | - | chr8_2:2454673-2454692 | None:intergenic | 45.0% |
| GTCTGGACAAGTGTTCCTTT+AGG | - | chr8_2:2454687-2454706 | None:intergenic | 45.0% | |
| AAAGGAACACTTGTCCAGAC+CGG | + | chr8_2:2454687-2454706 | Msa1227340:CDS | 45.0% | |
| ACCAATCATATTCTGCCCGA+CGG | + | chr8_2:2454813-2454832 | Msa1227340:CDS | 45.0% | |
| ATGATAATCTGACGTCCGTC+GGG | - | chr8_2:2454831-2454850 | None:intergenic | 45.0% | |
| GACGGACGTCAGATTATCAT+TGG | + | chr8_2:2454831-2454850 | Msa1227340:CDS | 45.0% | |
| CGGACGTCAGATTATCATTG+GGG | + | chr8_2:2454833-2454852 | Msa1227340:CDS | 45.0% | |
| GGACGTCAGATTATCATTGG+GGG | + | chr8_2:2454834-2454853 | Msa1227340:CDS | 45.0% | |
| ACATTTCCTCAAATCCCAGG+TGG | + | chr8_2:2455778-2455797 | Msa1227340:CDS | 45.0% | |
| CATTTCCTCAAATCCCAGGT+GGG | + | chr8_2:2455779-2455798 | Msa1227340:CDS | 45.0% | |
| ATTTCCTCAAATCCCAGGTG+GGG | + | chr8_2:2455780-2455799 | Msa1227340:CDS | 45.0% | |
| CTGAGCTTGGATAACTCCTA+GGG | - | chr8_2:2455807-2455826 | None:intergenic | 45.0% | |
| AGTTATCCAAGCTCAGGTTC+AGG | + | chr8_2:2455811-2455830 | Msa1227340:CDS | 45.0% | |
| GTTATCCAAGCTCAGGTTCA+GGG | + | chr8_2:2455812-2455831 | Msa1227340:CDS | 45.0% | |
| TTATCCAAGCTCAGGTTCAG+GGG | + | chr8_2:2455813-2455832 | Msa1227340:CDS | 45.0% | |
| !!! | GCTGAGGTTTTGATTTGTGG+TGG | + | chr8_2:2455877-2455896 | Msa1227340:CDS | 45.0% |
| ! | ATTTGTGGTGGAGCTCCAAA+AGG | + | chr8_2:2455889-2455908 | Msa1227340:CDS | 45.0% |
| TAACCGACCCAAATCCAACA+TGG | + | chr8_2:2455977-2455996 | Msa1227340:CDS | 45.0% | |
| AACCGACCCAAATCCAACAT+GGG | + | chr8_2:2455978-2455997 | Msa1227340:CDS | 45.0% | |
| AACCCATGTTGGATTTGGGT+CGG | - | chr8_2:2455983-2456002 | None:intergenic | 45.0% | |
| CCACAACCCATGTTGGATTT+GGG | - | chr8_2:2455987-2456006 | None:intergenic | 45.0% | |
| TCCACAACCCATGTTGGATT+TGG | - | chr8_2:2455988-2456007 | None:intergenic | 45.0% | |
| ATGCCTAGGGCTAGAGTAAT+GGG | + | chr8_2:2456012-2456031 | Msa1227340:CDS | 45.0% | |
| ! | GACATGGTAATGCTCCCAAA+TGG | + | chr8_2:2456036-2456055 | Msa1227340:CDS | 45.0% |
| ! | CATGGTAATGCTCCCAAATG+GGG | + | chr8_2:2456038-2456057 | Msa1227340:CDS | 45.0% |
| ! | TAATTAATGGAGCGGGTTCG+GGG | + | chr8_2:2456070-2456089 | Msa1227340:CDS | 45.0% |
| TACATTCGAGGCGTATGAGA+TGG | - | chr8_2:2456189-2456208 | None:intergenic | 45.0% | |
| GCAGTGGAATGATACATTCG+AGG | - | chr8_2:2456201-2456220 | None:intergenic | 45.0% | |
| AAGCGAGGTTCAAGGTAAGA+AGG | - | chr8_2:2456333-2456352 | None:intergenic | 45.0% | |
| GAATGTTCGTCCAAGGATTG+TGG | + | chr8_2:2456356-2456375 | Msa1227340:CDS | 45.0% | |
| GAAGTAGAAGCCACAATCCT+TGG | - | chr8_2:2456369-2456388 | None:intergenic | 45.0% | |
| ACTTCGGAACTGCAAAAGCA+CGG | + | chr8_2:2456384-2456403 | Msa1227340:CDS | 45.0% | |
| ! | GCAAAAGCACGGTCAAAAGT+TGG | + | chr8_2:2456395-2456414 | Msa1227340:CDS | 45.0% |
| CACCAACAACCTCTGATTCA+TGG | - | chr8_2:2456508-2456527 | None:intergenic | 45.0% | |
| GAATCAGAGGTTGTTGGTGT+TGG | + | chr8_2:2456509-2456528 | Msa1227340:CDS | 45.0% | |
| ! | AATCCAGGAGGTGCAAGAAT+AGG | - | chr8_2:2456600-2456619 | None:intergenic | 45.0% |
| AAGGAAGAGGAGATAGGTGG+TGG | - | chr8_2:2454343-2454362 | None:intergenic | 50.0% | |
| AATCACCACCACCCCATCTT+TGG | + | chr8_2:2454383-2454402 | Msa1227340:CDS | 50.0% | |
| TACTTGCCATTGTCCAGCTG+CGG | - | chr8_2:2454412-2454431 | None:intergenic | 50.0% | |
| TCCAAGCTCCCTTTACCCAA+CGG | + | chr8_2:2454522-2454541 | Msa1227340:CDS | 50.0% | |
| CGACACTTTCCGTTGGGTAA+AGG | - | chr8_2:2454534-2454553 | None:intergenic | 50.0% | |
| GTCATGACGACACTTTCCGT+TGG | - | chr8_2:2454541-2454560 | None:intergenic | 50.0% | |
| !! | CGTGCAATCGGTTTTAACGG+TGG | - | chr8_2:2454574-2454593 | None:intergenic | 50.0% |
| AACCGATTGCACGGCTCATT+CGG | + | chr8_2:2454581-2454600 | Msa1227340:CDS | 50.0% | |
| !! | CGTTTGGTGTTCTTCCGGTT+CGG | + | chr8_2:2454656-2454675 | Msa1227340:CDS | 50.0% |
| !! | TCCGGTTCGGTGAATCCTAA+AGG | + | chr8_2:2454669-2454688 | Msa1227340:CDS | 50.0% |
| GATTGGCAGGAATTTGACGG+CGG | + | chr8_2:2454765-2454784 | Msa1227340:CDS | 50.0% | |
| GTCGGGCAGAATATGATTGG+TGG | - | chr8_2:2454814-2454833 | None:intergenic | 50.0% | |
| TCCGTCGGGCAGAATATGAT+TGG | - | chr8_2:2454817-2454836 | None:intergenic | 50.0% | |
| CCTGAGCTTGGATAACTCCT+AGG | - | chr8_2:2455808-2455827 | None:intergenic | 50.0% | |
| CCTAGGAGTTATCCAAGCTC+AGG | + | chr8_2:2455805-2455824 | Msa1227340:CDS | 50.0% | |
| GCATCAAGGCGTGAGTTTCT+TGG | + | chr8_2:2455925-2455944 | Msa1227340:CDS | 50.0% | |
| ! | CCCAAATCCAACATGGGTTG+TGG | + | chr8_2:2455984-2456003 | Msa1227340:CDS | 50.0% |
| ATGGTCTCCACAACCCATGT+TGG | - | chr8_2:2455994-2456013 | None:intergenic | 50.0% | |
| CATTACTCTAGCCCTAGGCA+TGG | - | chr8_2:2456013-2456032 | None:intergenic | 50.0% | |
| CATGCCTAGGGCTAGAGTAA+TGG | + | chr8_2:2456011-2456030 | Msa1227340:CDS | 50.0% | |
| TCACCCATTACTCTAGCCCT+AGG | - | chr8_2:2456018-2456037 | None:intergenic | 50.0% | |
| !! | GGCTAGAGTAATGGGTGACA+TGG | + | chr8_2:2456020-2456039 | Msa1227340:CDS | 50.0% |
| !! | GCGAGACCCAGTTCTAAATC+CGG | + | chr8_2:2456113-2456132 | Msa1227340:CDS | 50.0% |
| CGTGATGGTAGGGTTCTTGT+TGG | + | chr8_2:2456231-2456250 | Msa1227340:CDS | 50.0% | |
| GATGGTAGGGTTCTTGTTGG+TGG | + | chr8_2:2456234-2456253 | Msa1227340:CDS | 50.0% | |
| GGTGGTAGCAACCCTCATAT+TGG | + | chr8_2:2456252-2456271 | Msa1227340:CDS | 50.0% | |
| GGTGCAAGAATAGGTGAACC+CGG | - | chr8_2:2456591-2456610 | None:intergenic | 50.0% | |
| TCACCTATTCTTGCACCTCC+TGG | + | chr8_2:2456594-2456613 | Msa1227340:CDS | 50.0% | |
| ! | GAAGAGGAGATAGGTGGTGG+TGG | - | chr8_2:2454340-2454359 | None:intergenic | 55.0% |
| AGCTGCGGCTACCAAAGATG+GGG | - | chr8_2:2454397-2454416 | None:intergenic | 55.0% | |
| CAGCTGCGGCTACCAAAGAT+GGG | - | chr8_2:2454398-2454417 | None:intergenic | 55.0% | |
| TCCGTTGGGTAAAGGGAGCT+TGG | - | chr8_2:2454526-2454545 | None:intergenic | 55.0% | |
| GACCGAATGAGCCGTGCAAT+CGG | - | chr8_2:2454586-2454605 | None:intergenic | 55.0% | |
| GTCTCCATCGTTGTAGCCAC+CGG | - | chr8_2:2454709-2454728 | None:intergenic | 55.0% | |
| AGTACCCCTGAACCTGAGCT+TGG | - | chr8_2:2455820-2455839 | None:intergenic | 55.0% | |
| GGTTGTGGAGACCATGCCTA+GGG | + | chr8_2:2455999-2456018 | Msa1227340:CDS | 55.0% | |
| CATTCGCGAAGCGAGGTTCA+AGG | - | chr8_2:2456341-2456360 | None:intergenic | 55.0% | |
| GCTTCGCGAATGTTCGTCCA+AGG | + | chr8_2:2456349-2456368 | Msa1227340:CDS | 55.0% | |
| !! | GAGGAGATAGGTGGTGGTGG+TGG | - | chr8_2:2454337-2454356 | None:intergenic | 60.0% |
| GGCTACCAAAGATGGGGTGG+TGG | - | chr8_2:2454391-2454410 | None:intergenic | 60.0% | |
| TGCGGCTACCAAAGATGGGG+TGG | - | chr8_2:2454394-2454413 | None:intergenic | 60.0% | |
| CCAGCTGCGGCTACCAAAGA+TGG | - | chr8_2:2454399-2454418 | None:intergenic | 60.0% | |
| ! | CCATCTTTGGTAGCCGCAGC+TGG | + | chr8_2:2454396-2454415 | Msa1227340:CDS | 60.0% |
| TGGTAGCCGCAGCTGGACAA+TGG | + | chr8_2:2454403-2454422 | Msa1227340:CDS | 60.0% | |
| GGAACACTTGTCCAGACCGG+TGG | + | chr8_2:2454690-2454709 | Msa1227340:CDS | 60.0% | |
| CATCGTTGTAGCCACCGGTC+TGG | - | chr8_2:2454704-2454723 | None:intergenic | 60.0% | |
| CAGACCGGTGGCTACAACGA+TGG | + | chr8_2:2454702-2454721 | Msa1227340:CDS | 60.0% | |
| !! | TTGACGGCGGACTTGCTGCT+CGG | + | chr8_2:2454778-2454797 | Msa1227340:CDS | 60.0% |
| AAATCCCAGGTGGGGACCCT+AGG | + | chr8_2:2455788-2455807 | Msa1227340:CDS | 60.0% | |
| AACTCCTAGGGTCCCCACCT+GGG | - | chr8_2:2455795-2455814 | None:intergenic | 60.0% | |
| TAACTCCTAGGGTCCCCACC+TGG | - | chr8_2:2455796-2455815 | None:intergenic | 60.0% | |
| GGGTTGTGGAGACCATGCCT+AGG | + | chr8_2:2455998-2456017 | Msa1227340:CDS | 60.0% | |
| GGGACAGCAGGGTGGGAATA+CGG | + | chr8_2:2456090-2456109 | Msa1227340:CDS | 60.0% | |
| GGACAGCAGGGTGGGAATAC+GGG | + | chr8_2:2456091-2456110 | Msa1227340:CDS | 60.0% | |
| GGACGAACATTCGCGAAGCG+AGG | - | chr8_2:2456348-2456367 | None:intergenic | 60.0% | |
| !! | GCGGACTTGCTGCTCGGAGA+TGG | + | chr8_2:2454784-2454803 | Msa1227340:CDS | 65.0% |
| GGGTCCCCACCTGGGATTTG+AGG | - | chr8_2:2455787-2455806 | None:intergenic | 65.0% | |
| ! | GAGCGGGTTCGGGGACAGCA+GGG | + | chr8_2:2456079-2456098 | Msa1227340:CDS | 70.0% |
| GGGTTCGGGGACAGCAGGGT+GGG | + | chr8_2:2456083-2456102 | Msa1227340:CDS | 70.0% | |
| ! | GGAGCGGGTTCGGGGACAGC+AGG | + | chr8_2:2456078-2456097 | Msa1227340:CDS | 75.0% |
| CGGGTTCGGGGACAGCAGGG+TGG | + | chr8_2:2456082-2456101 | Msa1227340:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 2454271 | 2456914 | 2454271 | ID=Msa1227340;Name=Msa1227340 |
| chr8_2 | mRNA | 2454271 | 2456914 | 2454271 | ID=Msa1227340-mRNA-1;Parent=Msa1227340;Name=Msa1227340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=59|1|1|1|1|1|2|231|544 |
| chr8_2 | exon | 2454271 | 2455043 | 2454271 | ID=Msa1227340-mRNA-1:exon:653;Parent=Msa1227340-mRNA-1 |
| chr8_2 | exon | 2455763 | 2456914 | 2455763 | ID=Msa1227340-mRNA-1:exon:654;Parent=Msa1227340-mRNA-1 |
| chr8_2 | five_prime_UTR | 2454271 | 2454329 | 2454271 | ID=Msa1227340-mRNA-1:five_prime_utr;Parent=Msa1227340-mRNA-1 |
| chr8_2 | CDS | 2454330 | 2455043 | 2454330 | ID=Msa1227340-mRNA-1:cds;Parent=Msa1227340-mRNA-1 |
| chr8_2 | CDS | 2455763 | 2456683 | 2455763 | ID=Msa1227340-mRNA-1:cds;Parent=Msa1227340-mRNA-1 |
| chr8_2 | three_prime_UTR | 2456684 | 2456914 | 2456684 | ID=Msa1227340-mRNA-1:three_prime_utr;Parent=Msa1227340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
