Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003040 | sp|Q9FYG4|GLOX1_ARATH | 48.276 | 522 | 261 | 8 | 30 | 544 | 96 | 615 | 5.17e-161 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003040 | G7I5Z0 | 95.580 | 543 | 22 | 2 | 3 | 544 | 2 | 543 | 0.0 | 1041 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003040 | Msa0012440 | 0.806125 | 9.572612e-50 | -8.615850e-47 |
| Msa0003040 | Msa0036430 | 0.817427 | 3.315666e-52 | -8.615850e-47 |
| Msa0003040 | Msa0084500 | 0.805826 | 1.106508e-49 | -8.615850e-47 |
| Msa0003040 | Msa0146920 | 0.947001 | 1.568056e-105 | -8.615850e-47 |
| Msa0003040 | Msa0149560 | 0.802698 | 4.959232e-49 | -8.615850e-47 |
| Msa0003040 | Msa0176470 | 0.807786 | 4.264564e-50 | -8.615850e-47 |
| Msa0003040 | Msa0203030 | 0.804191 | 2.431726e-49 | -8.615850e-47 |
| Msa0003040 | Msa0219190 | 0.805058 | 1.603593e-49 | -8.615850e-47 |
| Msa0003040 | Msa0236110 | 0.827289 | 1.698783e-54 | -8.615850e-47 |
| Msa0003040 | Msa0273990 | 0.809741 | 1.628781e-50 | -8.615850e-47 |
| Msa0003040 | Msa0314630 | 0.822529 | 2.255944e-53 | -8.615850e-47 |
| Msa0003040 | Msa0322830 | 0.838264 | 3.189475e-57 | -8.615850e-47 |
| Msa0003040 | Msa0322840 | 0.800174 | 1.630710e-48 | -8.615850e-47 |
| Msa0003040 | Msa0322860 | 0.831020 | 2.114982e-55 | -8.615850e-47 |
| Msa0003040 | Msa0880710 | 0.805490 | 1.301711e-49 | -8.615850e-47 |
| Msa0003040 | Msa0979510 | 0.832568 | 8.776307e-56 | -8.615850e-47 |
| Msa0003040 | Msa1113850 | 0.823513 | 1.330375e-53 | -8.615850e-47 |
| Msa0003040 | Msa1227340 | 0.952646 | 1.547113e-110 | -8.615850e-47 |
| Msa0003040 | Msa1292040 | 0.801672 | 8.060982e-49 | -8.615850e-47 |
| Msa0003040 | Msa1345420 | 0.802405 | 5.697816e-49 | -8.615850e-47 |
| Msa0003040 | Msa1420060 | 0.823758 | 1.165427e-53 | -8.615850e-47 |
| Msa0003040 | Msa1429420 | 0.800191 | 1.618309e-48 | -8.615850e-47 |
| Msa0003040 | Msa1442630 | 0.822281 | 2.576372e-53 | -8.615850e-47 |
| Msa0003040 | Msa1446520 | 0.960846 | 5.072425e-119 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003040 | MtrunA17_Chr1g0155971 | 95.580 | 543 | 22 | 2 | 3 | 544 | 2 | 543 | 0.0 | 1041 |
| Msa0003040 | MtrunA17_Chr3g0142351 | 71.212 | 528 | 142 | 5 | 26 | 544 | 29 | 555 | 0.0 | 796 |
| Msa0003040 | MtrunA17_Chr6g0449561 | 72.868 | 516 | 135 | 3 | 34 | 544 | 1 | 516 | 0.0 | 793 |
| Msa0003040 | MtrunA17_Chr7g0273771 | 57.824 | 524 | 210 | 5 | 30 | 544 | 49 | 570 | 0.0 | 619 |
| Msa0003040 | MtrunA17_Chr5g0415971 | 49.728 | 551 | 238 | 11 | 30 | 543 | 43 | 591 | 0.0 | 535 |
| Msa0003040 | MtrunA17_Chr8g0390171 | 44.612 | 529 | 278 | 12 | 26 | 543 | 108 | 632 | 1.02e-152 | 451 |
| Msa0003040 | MtrunA17_Chr3g0116651 | 44.129 | 528 | 275 | 10 | 30 | 543 | 42 | 563 | 1.20e-148 | 438 |
| Msa0003040 | MtrunA17_Chr4g0008611 | 45.185 | 540 | 277 | 11 | 9 | 543 | 6 | 531 | 2.18e-147 | 434 |
| Msa0003040 | MtrunA17_Chr6g0486561 | 44.835 | 455 | 229 | 12 | 106 | 543 | 8 | 457 | 1.66e-124 | 373 |
| Msa0003040 | MtrunA17_Chr6g0486551 | 39.024 | 82 | 47 | 2 | 28 | 106 | 54 | 135 | 2.03e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003040 | AT1G75620.1 | 61.850 | 519 | 186 | 6 | 30 | 543 | 35 | 546 | 0.0 | 661 |
| Msa0003040 | AT1G19900.1 | 59.501 | 521 | 206 | 4 | 27 | 543 | 28 | 547 | 0.0 | 658 |
| Msa0003040 | AT3G57620.1 | 53.089 | 518 | 231 | 5 | 31 | 543 | 36 | 546 | 0.0 | 586 |
| Msa0003040 | AT1G14430.1 | 50.542 | 554 | 250 | 8 | 7 | 543 | 18 | 564 | 0.0 | 555 |
| Msa0003040 | AT5G19580.1 | 46.857 | 525 | 264 | 10 | 29 | 544 | 76 | 594 | 4.45e-165 | 482 |
| Msa0003040 | AT1G67290.1 | 48.276 | 522 | 261 | 8 | 30 | 544 | 96 | 615 | 5.25e-162 | 474 |
| Msa0003040 | AT3G53950.1 | 44.762 | 525 | 266 | 12 | 30 | 544 | 34 | 544 | 3.16e-145 | 429 |
Find 161 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCATTCCACTGCAATTT+TGG | 0.154597 | 1_1:-5475398 | Msa0003040:CDS |
| AGCAACATTGGATAAGAATT+TGG | 0.214373 | 1_1:-5475167 | Msa0003040:CDS |
| TCCACAACCCATGTTGGATT+TGG | 0.222957 | 1_1:+5475619 | None:intergenic |
| AAATTCCTAGTGAAGGAATT+TGG | 0.231449 | 1_1:-5474958 | Msa0003040:CDS |
| ATAATTAATGGAGCGGGTTC+GGG | 0.268444 | 1_1:-5475535 | Msa0003040:CDS |
| GATAATTAATGGAGCGGGTT+CGG | 0.293058 | 1_1:-5475536 | Msa0003040:CDS |
| CCACAACCCATGTTGGATTT+GGG | 0.333106 | 1_1:+5475620 | None:intergenic |
| GCATCAAGGCGTGAGTTTCT+TGG | 0.335410 | 1_1:-5475679 | Msa0003040:CDS |
| GTCATTGTTGTTATGAGAAT+TGG | 0.336260 | 1_1:+5477238 | None:intergenic |
| TCACCTATTCTTGCACCTCC+TGG | 0.339464 | 1_1:-5475010 | Msa0003040:CDS |
| ATTATCAAAACGTCCCCATT+TGG | 0.341185 | 1_1:+5475553 | None:intergenic |
| ATAAAATTGTAACCAATATG+AGG | 0.355050 | 1_1:+5475340 | None:intergenic |
| AACCGATTGCACGGCTCATT+CGG | 0.355271 | 1_1:-5477023 | Msa0003040:CDS |
| CACCAACAACCTCTGATTCA+TGG | 0.367118 | 1_1:+5475099 | None:intergenic |
| GACACTTTCCGTTGGGTAAA+GGG | 0.373285 | 1_1:+5477074 | None:intergenic |
| GGGACAGCAGGGTGGGAATA+CGG | 0.374378 | 1_1:-5475514 | Msa0003040:CDS |
| TAAAGAACCGGATTTAGAAC+TGG | 0.381761 | 1_1:+5475484 | None:intergenic |
| AATGACCACCACCCCATCTT+TGG | 0.382394 | 1_1:-5477221 | Msa0003040:CDS |
| CGTGATGGTAGGGTTCTTGT+TGG | 0.385112 | 1_1:-5475373 | Msa0003040:CDS |
| GGAGCGGGTTCGGGGACAGC+AGG | 0.386297 | 1_1:-5475526 | Msa0003040:CDS |
| ACTGACGTTTGGTGTTCTTC+CGG | 0.387753 | 1_1:-5476953 | Msa0003040:CDS |
| AGTTATCCAAGCTCAGGTTC+AGG | 0.393608 | 1_1:-5475793 | Msa0003040:CDS |
| TGGAAGAAGGAAGAGGAGAT+AGG | 0.394304 | 1_1:+5477258 | None:intergenic |
| GAAAATGAGTGTGTGTTAAA+AGG | 0.395788 | 1_1:+5475121 | None:intergenic |
| CCATCTTTGGTAGCCGCAGC+TGG | 0.403295 | 1_1:-5477208 | Msa0003040:CDS |
| TTATCAAAACGTCCCCATTT+GGG | 0.409918 | 1_1:+5475554 | None:intergenic |
| TACAAAACTAATAACGTAAA+CGG | 0.415539 | 1_1:-5475463 | Msa0003040:CDS |
| ATGCCTAGGGCTAGAGTAAT+GGG | 0.418773 | 1_1:-5475592 | Msa0003040:CDS |
| GGTGGTAGCAACCCTCATAT+TGG | 0.419674 | 1_1:-5475352 | Msa0003040:CDS |
| GGACAGCAGGGTGGGAATAC+GGG | 0.420291 | 1_1:-5475513 | Msa0003040:CDS |
| CCAGCTGCGGCTACCAAAGA+TGG | 0.424781 | 1_1:+5477208 | None:intergenic |
| GTCTGGACAAGTGTTCCTTT+AGG | 0.436088 | 1_1:+5476920 | None:intergenic |
| TTTGATTGTAGATTCTTCAA+TGG | 0.436753 | 1_1:+5475760 | None:intergenic |
| CGTTTGGTGTTCTTCCGGTT+CGG | 0.443827 | 1_1:-5476948 | Msa0003040:CDS |
| ATATTTGATCGTACTGACTT+TGG | 0.444418 | 1_1:-5477109 | Msa0003040:CDS |
| GGGTCCCCACCTGGGATTTG+AGG | 0.445198 | 1_1:+5475820 | None:intergenic |
| AAGGATTGTGGCTTCTACTT+CGG | 0.446379 | 1_1:-5475236 | Msa0003040:CDS |
| CGACACTTTCCGTTGGGTAA+AGG | 0.450947 | 1_1:+5477073 | None:intergenic |
| CATCGTTGTAGCCACCGGTC+TGG | 0.451241 | 1_1:+5476903 | None:intergenic |
| GACGGACGTCAGATTATCAT+TGG | 0.452067 | 1_1:-5476773 | Msa0003040:CDS |
| AAAAGTTGTTGCTTAATGCT+TGG | 0.455257 | 1_1:-5474757 | Msa0003040:three_prime_UTR |
| GCAAAAGCACGGTCAAAAGT+TGG | 0.456115 | 1_1:-5475209 | Msa0003040:CDS |
| GCTTCGATACTAAGTTCAGT+TGG | 0.459077 | 1_1:+5475304 | None:intergenic |
| ACATGGTAATGCTCCCAAAT+GGG | 0.461570 | 1_1:-5475567 | Msa0003040:CDS |
| GAAGTAGAAGCCACAATCCT+TGG | 0.461659 | 1_1:+5475238 | None:intergenic |
| CCCAAATCCAACATGGGTTG+TGG | 0.465400 | 1_1:-5475620 | Msa0003040:CDS |
| ATGATAATCTGACGTCCGTC+GGG | 0.466571 | 1_1:+5476776 | None:intergenic |
| CAAAAGCACGGTCAAAAGTT+GGG | 0.467287 | 1_1:-5475208 | Msa0003040:CDS |
| CCTGAGCTTGGATAACTCCT+AGG | 0.467424 | 1_1:+5475799 | None:intergenic |
| TCCGTTGGGTAAAGGGAGCT+TGG | 0.468205 | 1_1:+5477081 | None:intergenic |
| TTGTAACAATTGTGATTGGC+AGG | 0.468700 | 1_1:-5476852 | Msa0003040:CDS |
| GAGGAGATAGGTGGTGGTGG+TGG | 0.471284 | 1_1:+5477270 | None:intergenic |
| GGTCATTGTTATTGTCACTA+AGG | 0.471923 | 1_1:+5477291 | None:intergenic |
| GACCGAATGAGCCGTGCAAT+CGG | 0.472666 | 1_1:+5477021 | None:intergenic |
| GACATGGTAATGCTCCCAAA+TGG | 0.475435 | 1_1:-5475568 | Msa0003040:CDS |
| TGTGATTGGCAGGAATTTGA+CGG | 0.477752 | 1_1:-5476842 | Msa0003040:CDS |
| GTTATCCAAGCTCAGGTTCA+GGG | 0.478365 | 1_1:-5475792 | Msa0003040:CDS |
| TCCGGTTCGGTGAATCCTAA+AGG | 0.479007 | 1_1:-5476935 | Msa0003040:CDS |
| AAATCCCAGGTGGGGACCCT+AGG | 0.479903 | 1_1:-5475816 | Msa0003040:CDS |
| CGGGTTCGGGGACAGCAGGG+TGG | 0.481834 | 1_1:-5475522 | Msa0003040:CDS |
| CATGCCTAGGGCTAGAGTAA+TGG | 0.483226 | 1_1:-5475593 | Msa0003040:CDS |
| AATCCAGGAGGTGCAAGAAT+AGG | 0.486846 | 1_1:+5475007 | None:intergenic |
| AAACAAAGTGAATAATGTGC+AGG | 0.487243 | 1_1:-5475068 | Msa0003040:CDS |
| TAACTCCTAGGGTCCCCACC+TGG | 0.487338 | 1_1:+5475811 | None:intergenic |
| TGATATTGAGGTTACTATGC+CGG | 0.487729 | 1_1:-5475035 | Msa0003040:CDS |
| TGTTTGTTCAAACTGACGTT+TGG | 0.489066 | 1_1:-5476964 | Msa0003040:CDS |
| CAGCTGCGGCTACCAAAGAT+GGG | 0.491660 | 1_1:+5477209 | None:intergenic |
| TTTGGTATATGTTACGATGT+TGG | 0.495056 | 1_1:-5475149 | Msa0003040:CDS |
| GTCTCCATCGTTGTAGCCAC+CGG | 0.495723 | 1_1:+5476898 | None:intergenic |
| TCCTTTAGGATTCACCGAAC+CGG | 0.496066 | 1_1:+5476934 | None:intergenic |
| AAGGAAGAGGAGATAGGTGG+TGG | 0.499045 | 1_1:+5477264 | None:intergenic |
| GGGTTCGGGGACAGCAGGGT+GGG | 0.499402 | 1_1:-5475521 | Msa0003040:CDS |
| CTTCGATACTAAGTTCAGTT+GGG | 0.500695 | 1_1:+5475305 | None:intergenic |
| ATACTTGTAACAATTGTGAT+TGG | 0.501433 | 1_1:-5476856 | Msa0003040:CDS |
| AGTACCCCTGAACCTGAGCT+TGG | 0.503306 | 1_1:+5475787 | None:intergenic |
| ACGGACGTCAGATTATCATT+GGG | 0.504627 | 1_1:-5476772 | Msa0003040:CDS |
| TCATGACGACACTTTCCGTT+GGG | 0.507837 | 1_1:+5477067 | None:intergenic |
| ATTTGTGGTGGAGCTCCAAA+AGG | 0.507956 | 1_1:-5475715 | Msa0003040:CDS |
| TGAGAATTGGAAGAAGGAAG+AGG | 0.508192 | 1_1:+5477251 | None:intergenic |
| CATTCGCGAAGCGAGGTTCA+AGG | 0.515507 | 1_1:+5475266 | None:intergenic |
| TGTATCCAAATTCCTTCACT+AGG | 0.522963 | 1_1:+5474953 | None:intergenic |
| TATCAAACATACGAATGGTT+CGG | 0.523167 | 1_1:+5476876 | None:intergenic |
| TATCCTCTTTGACTATACTA+AGG | 0.523749 | 1_1:-5476582 | Msa0003040:intron |
| TTCCATGAATCAGAGGTTGT+TGG | 0.524137 | 1_1:-5475101 | Msa0003040:CDS |
| TTGTTATGAGAATTGGAAGA+AGG | 0.524866 | 1_1:+5477245 | None:intergenic |
| GAAGAGGAGATAGGTGGTGG+TGG | 0.525822 | 1_1:+5477267 | None:intergenic |
| GAATGTTCGTCCAAGGATTG+TGG | 0.526224 | 1_1:-5475248 | Msa0003040:CDS |
| ATCAAAGTTTATACAAGCTG+AGG | 0.526362 | 1_1:-5475743 | Msa0003040:CDS |
| TCCGTCGGGCAGAATATGAT+TGG | 0.527723 | 1_1:+5476790 | None:intergenic |
| ATTTCAAGTAAAAGCAACAT+TGG | 0.531009 | 1_1:-5475179 | Msa0003040:CDS |
| AAGCGAGGTTCAAGGTAAGA+AGG | 0.532513 | 1_1:+5475274 | None:intergenic |
| GCGGACTTGCTGCTCGGAGA+TGG | 0.534369 | 1_1:-5476820 | Msa0003040:CDS |
| GATATTGAGGTTACTATGCC+GGG | 0.535099 | 1_1:-5475034 | Msa0003040:CDS |
| CAGACCGGTGGCTACAACGA+TGG | 0.536809 | 1_1:-5476902 | Msa0003040:CDS |
| GAATCAGAGGTTGTTGGTGT+TGG | 0.537446 | 1_1:-5475095 | Msa0003040:CDS |
| CCTAGGAGTTATCCAAGCTC+AGG | 0.540194 | 1_1:-5475799 | Msa0003040:CDS |
| AACTCCTAGGGTCCCCACCT+GGG | 0.542708 | 1_1:+5475812 | None:intergenic |
| GTCATGACGACACTTTCCGT+TGG | 0.543988 | 1_1:+5477066 | None:intergenic |
| GCGAGACCCAGTTCTAAATC+CGG | 0.547300 | 1_1:-5475491 | Msa0003040:CDS |
| GGGAACAACATATGATATTG+AGG | 0.552074 | 1_1:-5475047 | Msa0003040:CDS |
| TGTTGTTAGCAAAGATGAAG+AGG | 0.554181 | 1_1:+5476609 | None:intergenic |
| TACATTCGAGGCGTATGAGA+TGG | 0.557294 | 1_1:+5475418 | None:intergenic |
| TTGACGGCGGACTTGCTGCT+CGG | 0.557612 | 1_1:-5476826 | Msa0003040:CDS |
| CTACCTTAGTATAGTCAAAG+AGG | 0.562748 | 1_1:+5476579 | None:intergenic |
| ACAAATAGCAGATAAAATCC+AGG | 0.565016 | 1_1:+5474992 | None:intergenic |
| AACCCATGTTGGATTTGGGT+CGG | 0.566702 | 1_1:+5475624 | None:intergenic |
| TAAAATTGTAACCAATATGA+GGG | 0.567574 | 1_1:+5475341 | None:intergenic |
| AAAGAACCGGATTTAGAACT+GGG | 0.569963 | 1_1:+5475485 | None:intergenic |
| TTGGAACAGACTAATGATGC+TGG | 0.570563 | 1_1:-5476680 | Msa0003040:CDS |
| CATAAAGAAATTCCTAGTGA+AGG | 0.570695 | 1_1:-5474965 | Msa0003040:CDS |
| CACCGTTAAAACCGATTGCA+CGG | 0.572292 | 1_1:-5477032 | Msa0003040:CDS |
| AAACAATGGACGGAAAGTGT+TGG | 0.572611 | 1_1:+5476982 | None:intergenic |
| TCACCCATTACTCTAGCCCT+AGG | 0.572852 | 1_1:+5475589 | None:intergenic |
| GCTTCGCGAATGTTCGTCCA+AGG | 0.576507 | 1_1:-5475255 | Msa0003040:CDS |
| GATGGTAGGGTTCTTGTTGG+TGG | 0.579283 | 1_1:-5475370 | Msa0003040:CDS |
| AATGATAATCTGACGTCCGT+CGG | 0.588364 | 1_1:+5476775 | None:intergenic |
| GTCGGGCAGAATATGATTGG+TGG | 0.588441 | 1_1:+5476793 | None:intergenic |
| TAATTAATGGAGCGGGTTCG+GGG | 0.591461 | 1_1:-5475534 | Msa0003040:CDS |
| GGCTACCAAAGATGGGGTGG+TGG | 0.592749 | 1_1:+5477216 | None:intergenic |
| GGCTAGAGTAATGGGTGACA+TGG | 0.592897 | 1_1:-5475584 | Msa0003040:CDS |
| GGGTTGTGGAGACCATGCCT+AGG | 0.592998 | 1_1:-5475606 | Msa0003040:CDS |
| GAGCGGGTTCGGGGACAGCA+GGG | 0.594837 | 1_1:-5475525 | Msa0003040:CDS |
| TAACCGACCCAAATCCAACA+TGG | 0.597315 | 1_1:-5475627 | Msa0003040:CDS |
| AGAACATTTCCTCAAATCCC+AGG | 0.598634 | 1_1:-5475829 | Msa0003040:CDS |
| TCCAAGCTCCCTTTACCCAA+CGG | 0.604138 | 1_1:-5477082 | Msa0003040:CDS |
| AAAGGAACACTTGTCCAGAC+CGG | 0.605527 | 1_1:-5476917 | Msa0003040:CDS |
| TGGTAGCCGCAGCTGGACAA+TGG | 0.606010 | 1_1:-5477201 | Msa0003040:CDS |
| TGCGGCTACCAAAGATGGGG+TGG | 0.606891 | 1_1:+5477213 | None:intergenic |
| GCAGTGGAATGATACATTCG+AGG | 0.606915 | 1_1:+5475406 | None:intergenic |
| CAGTTTGAACAAACAATGGA+CGG | 0.608679 | 1_1:+5476972 | None:intergenic |
| AACAAAGTGAATAATGTGCA+GGG | 0.608995 | 1_1:-5475067 | Msa0003040:CDS |
| AAGAAGGAAGAGGAGATAGG+TGG | 0.613810 | 1_1:+5477261 | None:intergenic |
| CTGAGCTTGGATAACTCCTA+GGG | 0.614436 | 1_1:+5475800 | None:intergenic |
| ACGTCAGTTTGAACAAACAA+TGG | 0.614768 | 1_1:+5476968 | None:intergenic |
| CAAATTTAACTAGAATGTAG+TGG | 0.615118 | 1_1:-5475854 | Msa0003040:intron |
| GTGAAGAAGTTGCATGTGCA+TGG | 0.615355 | 1_1:+5477147 | None:intergenic |
| ACAAGTATCAAACATACGAA+TGG | 0.619375 | 1_1:+5476871 | None:intergenic |
| CTCATAACAGAGATTAGAGA+GGG | 0.620700 | 1_1:+5474848 | None:intergenic |
| GGTTGTGGAGACCATGCCTA+GGG | 0.621634 | 1_1:-5475605 | Msa0003040:CDS |
| GGACGAACATTCGCGAAGCG+AGG | 0.625391 | 1_1:+5475259 | None:intergenic |
| ATCACGAACCAAAATTGCAG+TGG | 0.632842 | 1_1:+5475390 | None:intergenic |
| ATGGTCTCCACAACCCATGT+TGG | 0.632893 | 1_1:+5475613 | None:intergenic |
| CATTTCCTCAAATCCCAGGT+GGG | 0.633836 | 1_1:-5475825 | Msa0003040:CDS |
| ACCAATCATATTCTGCCCGA+CGG | 0.637737 | 1_1:-5476791 | Msa0003040:CDS |
| AACCGACCCAAATCCAACAT+GGG | 0.637839 | 1_1:-5475626 | Msa0003040:CDS |
| ATTTCCTCAAATCCCAGGTG+GGG | 0.639095 | 1_1:-5475824 | Msa0003040:CDS |
| GGTGCAAGAATAGGTGAACC+CGG | 0.641982 | 1_1:+5475016 | None:intergenic |
| TTATCCAAGCTCAGGTTCAG+GGG | 0.643701 | 1_1:-5475791 | Msa0003040:CDS |
| ACTTCGGAACTGCAAAAGCA+CGG | 0.645621 | 1_1:-5475220 | Msa0003040:CDS |
| CATGGTAATGCTCCCAAATG+GGG | 0.649064 | 1_1:-5475566 | Msa0003040:CDS |
| CATTACTCTAGCCCTAGGCA+TGG | 0.651243 | 1_1:+5475594 | None:intergenic |
| AGCTGCGGCTACCAAAGATG+GGG | 0.651533 | 1_1:+5477210 | None:intergenic |
| CGGACGTCAGATTATCATTG+GGG | 0.661128 | 1_1:-5476771 | Msa0003040:CDS |
| GGAACACTTGTCCAGACCGG+TGG | 0.665244 | 1_1:-5476914 | Msa0003040:CDS |
| TACTTGCCATTGTCCAGCTG+CGG | 0.669654 | 1_1:+5477195 | None:intergenic |
| TCTCATAACAGAGATTAGAG+AGG | 0.679213 | 1_1:+5474847 | None:intergenic |
| ACATTTCCTCAAATCCCAGG+TGG | 0.682481 | 1_1:-5475826 | Msa0003040:CDS |
| AATGAGTGTGTGTTAAAAGG+TGG | 0.707159 | 1_1:+5475124 | None:intergenic |
| GGACGTCAGATTATCATTGG+GGG | 0.730353 | 1_1:-5476770 | Msa0003040:CDS |
| AATAGCAGATAAAATCCAGG+AGG | 0.735992 | 1_1:+5474995 | None:intergenic |
| GATTGGCAGGAATTTGACGG+CGG | 0.737585 | 1_1:-5476839 | Msa0003040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTGGTTTTAATTATTATT+TGG | - | chr1_1:5475568-5475587 | Msa0003040:CDS | 15.0% |
| !!! | TAAATAACTGTGTTTTATTA+TGG | - | chr1_1:5475878-5475897 | Msa0003040:intron | 15.0% |
| !!! | TAGTAAATGTTTTTCATTTG+TGG | - | chr1_1:5475551-5475570 | Msa0003040:CDS | 20.0% |
| !! | TCAAATTCATAATTTGAACA+TGG | - | chr1_1:5475745-5475764 | Msa0003040:CDS | 20.0% |
| !!! | TTATTAGTTTTGTAAAGAAC+CGG | + | chr1_1:5476577-5476596 | None:intergenic | 20.0% |
| !! | TACAAAACTAATAACGTAAA+CGG | - | chr1_1:5476583-5476602 | Msa0003040:CDS | 20.0% |
| !! | TAAAATTGTAACCAATATGA+GGG | + | chr1_1:5476708-5476727 | None:intergenic | 20.0% |
| !! | ATAAAATTGTAACCAATATG+AGG | + | chr1_1:5476709-5476728 | None:intergenic | 20.0% |
| !!! | ATAAAAAAGTACAAACACTA+GGG | + | chr1_1:5477319-5477338 | None:intergenic | 20.0% |
| !!! | TATAAAAAAGTACAAACACT+AGG | + | chr1_1:5477320-5477339 | None:intergenic | 20.0% |
| ! | ATACTTGTAACAATTGTGAT+TGG | - | chr1_1:5475190-5475209 | Msa0003040:CDS | 25.0% |
| !! | ACTTTGCATTATGTTTGTTA+AGG | - | chr1_1:5475497-5475516 | Msa0003040:CDS | 25.0% |
| !!! | CTGTGTTTTATTATGGTATA+TGG | - | chr1_1:5475885-5475904 | Msa0003040:intron | 25.0% |
| !!! | ACTTTTAATTTTTGCTACGT+TGG | - | chr1_1:5476143-5476162 | Msa0003040:intron | 25.0% |
| ! | CAAATTTAACTAGAATGTAG+TGG | - | chr1_1:5476192-5476211 | Msa0003040:intron | 25.0% |
| ! | TTTGATTGTAGATTCTTCAA+TGG | + | chr1_1:5476289-5476308 | None:intergenic | 25.0% |
| !! | ATTTCAAGTAAAAGCAACAT+TGG | - | chr1_1:5476867-5476886 | Msa0003040:CDS | 25.0% |
| !! | AATTTTCAAATGCAATTGTG+TGG | - | chr1_1:5477124-5477143 | Msa0003040:CDS | 25.0% |
| !!! | TAAGCAACAACTTTTTTTAG+AGG | + | chr1_1:5477284-5477303 | None:intergenic | 25.0% |
| TTGTTATGAGAATTGGAAGA+AGG | + | chr1_1:5474804-5474823 | None:intergenic | 30.0% | |
| ! | GTCATTGTTGTTATGAGAAT+TGG | + | chr1_1:5474811-5474830 | None:intergenic | 30.0% |
| !! | ATATTTGATCGTACTGACTT+TGG | - | chr1_1:5474937-5474956 | Msa0003040:exon | 30.0% |
| TATCAAACATACGAATGGTT+CGG | + | chr1_1:5475173-5475192 | None:intergenic | 30.0% | |
| ACAAGTATCAAACATACGAA+TGG | + | chr1_1:5475178-5475197 | None:intergenic | 30.0% | |
| ! | TTTTACCCTAAAAACGACAA+TGG | - | chr1_1:5475321-5475340 | Msa0003040:CDS | 30.0% |
| ! | TCATTAGTCTGTTCCAAAAA+CGG | + | chr1_1:5475363-5475382 | None:intergenic | 30.0% |
| !! | TCCATTTGTTTTTCTCAATG+TGG | - | chr1_1:5475407-5475426 | Msa0003040:CDS | 30.0% |
| TCCACATTGAGAAAAACAAA+TGG | + | chr1_1:5475411-5475430 | None:intergenic | 30.0% | |
| !! | TTTGTTTTTCTCAATGTGGA+TGG | - | chr1_1:5475411-5475430 | Msa0003040:CDS | 30.0% |
| TATCCTCTTTGACTATACTA+AGG | - | chr1_1:5475464-5475483 | Msa0003040:CDS | 30.0% | |
| ACATAAGTTTGGTCTCATAA+GGG | + | chr1_1:5475788-5475807 | None:intergenic | 30.0% | |
| TTCGAAGAAAGACATAAGTT+TGG | + | chr1_1:5475799-5475818 | None:intergenic | 30.0% | |
| AAACTTATGTCTTTCTTCGA+AGG | - | chr1_1:5475798-5475817 | Msa0003040:CDS | 30.0% | |
| ATCAAAGTTTATACAAGCTG+AGG | - | chr1_1:5476303-5476322 | Msa0003040:intron | 30.0% | |
| ! | GCTTTTTGATAAGATCCTTT+TGG | + | chr1_1:5476349-5476368 | None:intergenic | 30.0% |
| !! | GATCTTATCAAAAAGCATCA+AGG | - | chr1_1:5476353-5476372 | Msa0003040:intron | 30.0% |
| !! | CGTTTTGATAATTAATGGAG+CGG | - | chr1_1:5476504-5476523 | Msa0003040:intron | 30.0% |
| !! | GTTTTGATAATTAATGGAGC+GGG | - | chr1_1:5476505-5476524 | Msa0003040:intron | 30.0% |
| AGCAACATTGGATAAGAATT+TGG | - | chr1_1:5476879-5476898 | Msa0003040:CDS | 30.0% | |
| TTTGGTATATGTTACGATGT+TGG | - | chr1_1:5476897-5476916 | Msa0003040:CDS | 30.0% | |
| GAAAATGAGTGTGTGTTAAA+AGG | + | chr1_1:5476928-5476947 | None:intergenic | 30.0% | |
| AAACAAAGTGAATAATGTGC+AGG | - | chr1_1:5476978-5476997 | Msa0003040:CDS | 30.0% | |
| AACAAAGTGAATAATGTGCA+GGG | - | chr1_1:5476979-5476998 | Msa0003040:CDS | 30.0% | |
| ACAAATAGCAGATAAAATCC+AGG | + | chr1_1:5477057-5477076 | None:intergenic | 30.0% | |
| !! | TGGATTTTATCTGCTATTTG+TGG | - | chr1_1:5477056-5477075 | Msa0003040:CDS | 30.0% |
| CATAAAGAAATTCCTAGTGA+AGG | - | chr1_1:5477081-5477100 | Msa0003040:CDS | 30.0% | |
| AAATTCCTAGTGAAGGAATT+TGG | - | chr1_1:5477088-5477107 | Msa0003040:CDS | 30.0% | |
| ! | AAAAGTTGTTGCTTAATGCT+TGG | - | chr1_1:5477289-5477308 | Msa0003040:exon | 30.0% |
| ! | GGTCATTGTTATTGTCACTA+AGG | + | chr1_1:5474758-5474777 | None:intergenic | 35.0% |
| ! | CAAGTACTGCAAAAAAGCAT+CGG | - | chr1_1:5474868-5474887 | Msa0003040:three_prime_UTR | 35.0% |
| CAGTTTGAACAAACAATGGA+CGG | + | chr1_1:5475077-5475096 | None:intergenic | 35.0% | |
| ACGTCAGTTTGAACAAACAA+TGG | + | chr1_1:5475081-5475100 | None:intergenic | 35.0% | |
| TGTTTGTTCAAACTGACGTT+TGG | - | chr1_1:5475082-5475101 | Msa0003040:CDS | 35.0% | |
| TTGTAACAATTGTGATTGGC+AGG | - | chr1_1:5475194-5475213 | Msa0003040:CDS | 35.0% | |
| !!! | TAGCACCATTGTCGTTTTTA+GGG | + | chr1_1:5475329-5475348 | None:intergenic | 35.0% |
| TGTTGTTAGCAAAGATGAAG+AGG | + | chr1_1:5475440-5475459 | None:intergenic | 35.0% | |
| CTACCTTAGTATAGTCAAAG+AGG | + | chr1_1:5475470-5475489 | None:intergenic | 35.0% | |
| GACATAAGTTTGGTCTCATA+AGG | + | chr1_1:5475789-5475808 | None:intergenic | 35.0% | |
| ! | CTTTTAATGCATGTCCTCAA+AGG | - | chr1_1:5476084-5476103 | Msa0003040:intron | 35.0% |
| !!! | ACACTTAGTTTTGACCTTTG+AGG | + | chr1_1:5476101-5476120 | None:intergenic | 35.0% |
| !!! | TTGGGTCGGTTATTTTGATT+CGG | + | chr1_1:5476411-5476430 | None:intergenic | 35.0% |
| TTATCAAAACGTCCCCATTT+GGG | + | chr1_1:5476495-5476514 | None:intergenic | 35.0% | |
| ATTATCAAAACGTCCCCATT+TGG | + | chr1_1:5476496-5476515 | None:intergenic | 35.0% | |
| !! | GGGGACGTTTTGATAATTAA+TGG | - | chr1_1:5476499-5476518 | Msa0003040:intron | 35.0% |
| ! | AAAGAACCGGATTTAGAACT+GGG | + | chr1_1:5476564-5476583 | None:intergenic | 35.0% |
| ! | TAAAGAACCGGATTTAGAAC+TGG | + | chr1_1:5476565-5476584 | None:intergenic | 35.0% |
| ! | GTATCATTCCACTGCAATTT+TGG | - | chr1_1:5476648-5476667 | Msa0003040:CDS | 35.0% |
| !!! | AATTTTGGTTCGTGATGGTA+GGG | - | chr1_1:5476663-5476682 | Msa0003040:CDS | 35.0% |
| CTTCGATACTAAGTTCAGTT+GGG | + | chr1_1:5476744-5476763 | None:intergenic | 35.0% | |
| AATGAGTGTGTGTTAAAAGG+TGG | + | chr1_1:5476925-5476944 | None:intergenic | 35.0% | |
| ! | ACTCATTTTCCATGAATCAG+AGG | - | chr1_1:5476938-5476957 | Msa0003040:CDS | 35.0% |
| GGGAACAACATATGATATTG+AGG | - | chr1_1:5476999-5477018 | Msa0003040:CDS | 35.0% | |
| TGATATTGAGGTTACTATGC+CGG | - | chr1_1:5477011-5477030 | Msa0003040:CDS | 35.0% | |
| AATAGCAGATAAAATCCAGG+AGG | + | chr1_1:5477054-5477073 | None:intergenic | 35.0% | |
| TGTATCCAAATTCCTTCACT+AGG | + | chr1_1:5477096-5477115 | None:intergenic | 35.0% | |
| CTCATAACAGAGATTAGAGA+GGG | + | chr1_1:5477201-5477220 | None:intergenic | 35.0% | |
| TCTCATAACAGAGATTAGAG+AGG | + | chr1_1:5477202-5477221 | None:intergenic | 35.0% | |
| TGAGAATTGGAAGAAGGAAG+AGG | + | chr1_1:5474798-5474817 | None:intergenic | 40.0% | |
| ! | TTTTAACGGTGGTTTCTCTG+GGG | + | chr1_1:5475005-5475024 | None:intergenic | 40.0% |
| !! | GTTTTAACGGTGGTTTCTCT+GGG | + | chr1_1:5475006-5475025 | None:intergenic | 40.0% |
| ! | AAACAATGGACGGAAAGTGT+TGG | + | chr1_1:5475067-5475086 | None:intergenic | 40.0% |
| TGTGATTGGCAGGAATTTGA+CGG | - | chr1_1:5475204-5475223 | Msa0003040:CDS | 40.0% | |
| AATGATAATCTGACGTCCGT+CGG | + | chr1_1:5475274-5475293 | None:intergenic | 40.0% | |
| ACGGACGTCAGATTATCATT+GGG | - | chr1_1:5475274-5475293 | Msa0003040:CDS | 40.0% | |
| !!! | GTAGCACCATTGTCGTTTTT+AGG | + | chr1_1:5475330-5475349 | None:intergenic | 40.0% |
| !!! | TACAGTTCGTTTGCCGTTTT+TGG | - | chr1_1:5475347-5475366 | Msa0003040:CDS | 40.0% |
| TTGGAACAGACTAATGATGC+TGG | - | chr1_1:5475366-5475385 | Msa0003040:CDS | 40.0% | |
| AGAACATTTCCTCAAATCCC+AGG | - | chr1_1:5476217-5476236 | Msa0003040:intron | 40.0% | |
| !!! | CAAGCTGAGGTTTTGATTTG+TGG | - | chr1_1:5476316-5476335 | Msa0003040:intron | 40.0% |
| !!! | TGGGTCGGTTATTTTGATTC+GGG | + | chr1_1:5476410-5476429 | None:intergenic | 40.0% |
| ! | ACATGGTAATGCTCCCAAAT+GGG | - | chr1_1:5476479-5476498 | Msa0003040:intron | 40.0% |
| ! | GATAATTAATGGAGCGGGTT+CGG | - | chr1_1:5476510-5476529 | Msa0003040:intron | 40.0% |
| ! | ATAATTAATGGAGCGGGTTC+GGG | - | chr1_1:5476511-5476530 | Msa0003040:intron | 40.0% |
| ATCACGAACCAAAATTGCAG+TGG | + | chr1_1:5476659-5476678 | None:intergenic | 40.0% | |
| !!! | ACTGCAATTTTGGTTCGTGA+TGG | - | chr1_1:5476658-5476677 | Msa0003040:CDS | 40.0% |
| !!! | CAATTTTGGTTCGTGATGGT+AGG | - | chr1_1:5476662-5476681 | Msa0003040:CDS | 40.0% |
| GCTTCGATACTAAGTTCAGT+TGG | + | chr1_1:5476745-5476764 | None:intergenic | 40.0% | |
| AAGGATTGTGGCTTCTACTT+CGG | - | chr1_1:5476810-5476829 | Msa0003040:CDS | 40.0% | |
| ! | CAAAAGCACGGTCAAAAGTT+GGG | - | chr1_1:5476838-5476857 | Msa0003040:CDS | 40.0% |
| TTCCATGAATCAGAGGTTGT+TGG | - | chr1_1:5476945-5476964 | Msa0003040:CDS | 40.0% | |
| GATATTGAGGTTACTATGCC+GGG | - | chr1_1:5477012-5477031 | Msa0003040:CDS | 40.0% | |
| AAGAAGGAAGAGGAGATAGG+TGG | + | chr1_1:5474788-5474807 | None:intergenic | 45.0% | |
| TGGAAGAAGGAAGAGGAGAT+AGG | + | chr1_1:5474791-5474810 | None:intergenic | 45.0% | |
| !! | GCAAAAAAGCATCGGCATTG+TGG | - | chr1_1:5474876-5474895 | Msa0003040:three_prime_UTR | 45.0% |
| GTGAAGAAGTTGCATGTGCA+TGG | + | chr1_1:5474902-5474921 | None:intergenic | 45.0% | |
| GACACTTTCCGTTGGGTAAA+GGG | + | chr1_1:5474975-5474994 | None:intergenic | 45.0% | |
| TCATGACGACACTTTCCGTT+GGG | + | chr1_1:5474982-5475001 | None:intergenic | 45.0% | |
| !! | GGTTTTAACGGTGGTTTCTC+TGG | + | chr1_1:5475007-5475026 | None:intergenic | 45.0% |
| CACCGTTAAAACCGATTGCA+CGG | - | chr1_1:5475014-5475033 | Msa0003040:CDS | 45.0% | |
| !! | AGCCGTGCAATCGGTTTTAA+CGG | + | chr1_1:5475019-5475038 | None:intergenic | 45.0% |
| !! | ACTGACGTTTGGTGTTCTTC+CGG | - | chr1_1:5475093-5475112 | Msa0003040:CDS | 45.0% |
| !! | TCCTTTAGGATTCACCGAAC+CGG | + | chr1_1:5475115-5475134 | None:intergenic | 45.0% |
| GTCTGGACAAGTGTTCCTTT+AGG | + | chr1_1:5475129-5475148 | None:intergenic | 45.0% | |
| AAAGGAACACTTGTCCAGAC+CGG | - | chr1_1:5475129-5475148 | Msa0003040:CDS | 45.0% | |
| ACCAATCATATTCTGCCCGA+CGG | - | chr1_1:5475255-5475274 | Msa0003040:CDS | 45.0% | |
| ATGATAATCTGACGTCCGTC+GGG | + | chr1_1:5475273-5475292 | None:intergenic | 45.0% | |
| GACGGACGTCAGATTATCAT+TGG | - | chr1_1:5475273-5475292 | Msa0003040:CDS | 45.0% | |
| CGGACGTCAGATTATCATTG+GGG | - | chr1_1:5475275-5475294 | Msa0003040:CDS | 45.0% | |
| GGACGTCAGATTATCATTGG+GGG | - | chr1_1:5475276-5475295 | Msa0003040:CDS | 45.0% | |
| ACATTTCCTCAAATCCCAGG+TGG | - | chr1_1:5476220-5476239 | Msa0003040:intron | 45.0% | |
| CATTTCCTCAAATCCCAGGT+GGG | - | chr1_1:5476221-5476240 | Msa0003040:intron | 45.0% | |
| ATTTCCTCAAATCCCAGGTG+GGG | - | chr1_1:5476222-5476241 | Msa0003040:intron | 45.0% | |
| CTGAGCTTGGATAACTCCTA+GGG | + | chr1_1:5476249-5476268 | None:intergenic | 45.0% | |
| AGTTATCCAAGCTCAGGTTC+AGG | - | chr1_1:5476253-5476272 | Msa0003040:intron | 45.0% | |
| GTTATCCAAGCTCAGGTTCA+GGG | - | chr1_1:5476254-5476273 | Msa0003040:intron | 45.0% | |
| TTATCCAAGCTCAGGTTCAG+GGG | - | chr1_1:5476255-5476274 | Msa0003040:intron | 45.0% | |
| !!! | GCTGAGGTTTTGATTTGTGG+TGG | - | chr1_1:5476319-5476338 | Msa0003040:intron | 45.0% |
| ! | ATTTGTGGTGGAGCTCCAAA+AGG | - | chr1_1:5476331-5476350 | Msa0003040:intron | 45.0% |
| TAACCGACCCAAATCCAACA+TGG | - | chr1_1:5476419-5476438 | Msa0003040:intron | 45.0% | |
| AACCGACCCAAATCCAACAT+GGG | - | chr1_1:5476420-5476439 | Msa0003040:intron | 45.0% | |
| AACCCATGTTGGATTTGGGT+CGG | + | chr1_1:5476425-5476444 | None:intergenic | 45.0% | |
| CCACAACCCATGTTGGATTT+GGG | + | chr1_1:5476429-5476448 | None:intergenic | 45.0% | |
| TCCACAACCCATGTTGGATT+TGG | + | chr1_1:5476430-5476449 | None:intergenic | 45.0% | |
| ATGCCTAGGGCTAGAGTAAT+GGG | - | chr1_1:5476454-5476473 | Msa0003040:intron | 45.0% | |
| ! | GACATGGTAATGCTCCCAAA+TGG | - | chr1_1:5476478-5476497 | Msa0003040:intron | 45.0% |
| ! | CATGGTAATGCTCCCAAATG+GGG | - | chr1_1:5476480-5476499 | Msa0003040:intron | 45.0% |
| ! | TAATTAATGGAGCGGGTTCG+GGG | - | chr1_1:5476512-5476531 | Msa0003040:intron | 45.0% |
| TACATTCGAGGCGTATGAGA+TGG | + | chr1_1:5476631-5476650 | None:intergenic | 45.0% | |
| GCAGTGGAATGATACATTCG+AGG | + | chr1_1:5476643-5476662 | None:intergenic | 45.0% | |
| AAGCGAGGTTCAAGGTAAGA+AGG | + | chr1_1:5476775-5476794 | None:intergenic | 45.0% | |
| GAATGTTCGTCCAAGGATTG+TGG | - | chr1_1:5476798-5476817 | Msa0003040:CDS | 45.0% | |
| GAAGTAGAAGCCACAATCCT+TGG | + | chr1_1:5476811-5476830 | None:intergenic | 45.0% | |
| ACTTCGGAACTGCAAAAGCA+CGG | - | chr1_1:5476826-5476845 | Msa0003040:CDS | 45.0% | |
| ! | GCAAAAGCACGGTCAAAAGT+TGG | - | chr1_1:5476837-5476856 | Msa0003040:CDS | 45.0% |
| CACCAACAACCTCTGATTCA+TGG | + | chr1_1:5476950-5476969 | None:intergenic | 45.0% | |
| GAATCAGAGGTTGTTGGTGT+TGG | - | chr1_1:5476951-5476970 | Msa0003040:CDS | 45.0% | |
| ! | AATCCAGGAGGTGCAAGAAT+AGG | + | chr1_1:5477042-5477061 | None:intergenic | 45.0% |
| AAGGAAGAGGAGATAGGTGG+TGG | + | chr1_1:5474785-5474804 | None:intergenic | 50.0% | |
| AATGACCACCACCCCATCTT+TGG | - | chr1_1:5474825-5474844 | Msa0003040:three_prime_UTR | 50.0% | |
| TACTTGCCATTGTCCAGCTG+CGG | + | chr1_1:5474854-5474873 | None:intergenic | 50.0% | |
| TCCAAGCTCCCTTTACCCAA+CGG | - | chr1_1:5474964-5474983 | Msa0003040:CDS | 50.0% | |
| CGACACTTTCCGTTGGGTAA+AGG | + | chr1_1:5474976-5474995 | None:intergenic | 50.0% | |
| GTCATGACGACACTTTCCGT+TGG | + | chr1_1:5474983-5475002 | None:intergenic | 50.0% | |
| !! | CGTGCAATCGGTTTTAACGG+TGG | + | chr1_1:5475016-5475035 | None:intergenic | 50.0% |
| AACCGATTGCACGGCTCATT+CGG | - | chr1_1:5475023-5475042 | Msa0003040:CDS | 50.0% | |
| !! | CGTTTGGTGTTCTTCCGGTT+CGG | - | chr1_1:5475098-5475117 | Msa0003040:CDS | 50.0% |
| !! | TCCGGTTCGGTGAATCCTAA+AGG | - | chr1_1:5475111-5475130 | Msa0003040:CDS | 50.0% |
| GATTGGCAGGAATTTGACGG+CGG | - | chr1_1:5475207-5475226 | Msa0003040:CDS | 50.0% | |
| GTCGGGCAGAATATGATTGG+TGG | + | chr1_1:5475256-5475275 | None:intergenic | 50.0% | |
| TCCGTCGGGCAGAATATGAT+TGG | + | chr1_1:5475259-5475278 | None:intergenic | 50.0% | |
| CCTGAGCTTGGATAACTCCT+AGG | + | chr1_1:5476250-5476269 | None:intergenic | 50.0% | |
| CCTAGGAGTTATCCAAGCTC+AGG | - | chr1_1:5476247-5476266 | Msa0003040:intron | 50.0% | |
| GCATCAAGGCGTGAGTTTCT+TGG | - | chr1_1:5476367-5476386 | Msa0003040:intron | 50.0% | |
| ! | CCCAAATCCAACATGGGTTG+TGG | - | chr1_1:5476426-5476445 | Msa0003040:intron | 50.0% |
| ATGGTCTCCACAACCCATGT+TGG | + | chr1_1:5476436-5476455 | None:intergenic | 50.0% | |
| CATTACTCTAGCCCTAGGCA+TGG | + | chr1_1:5476455-5476474 | None:intergenic | 50.0% | |
| CATGCCTAGGGCTAGAGTAA+TGG | - | chr1_1:5476453-5476472 | Msa0003040:intron | 50.0% | |
| TCACCCATTACTCTAGCCCT+AGG | + | chr1_1:5476460-5476479 | None:intergenic | 50.0% | |
| !! | GGCTAGAGTAATGGGTGACA+TGG | - | chr1_1:5476462-5476481 | Msa0003040:intron | 50.0% |
| !! | GCGAGACCCAGTTCTAAATC+CGG | - | chr1_1:5476555-5476574 | Msa0003040:intron | 50.0% |
| CGTGATGGTAGGGTTCTTGT+TGG | - | chr1_1:5476673-5476692 | Msa0003040:CDS | 50.0% | |
| GATGGTAGGGTTCTTGTTGG+TGG | - | chr1_1:5476676-5476695 | Msa0003040:CDS | 50.0% | |
| GGTGGTAGCAACCCTCATAT+TGG | - | chr1_1:5476694-5476713 | Msa0003040:CDS | 50.0% | |
| GGTGCAAGAATAGGTGAACC+CGG | + | chr1_1:5477033-5477052 | None:intergenic | 50.0% | |
| TCACCTATTCTTGCACCTCC+TGG | - | chr1_1:5477036-5477055 | Msa0003040:CDS | 50.0% | |
| ! | GAAGAGGAGATAGGTGGTGG+TGG | + | chr1_1:5474782-5474801 | None:intergenic | 55.0% |
| AGCTGCGGCTACCAAAGATG+GGG | + | chr1_1:5474839-5474858 | None:intergenic | 55.0% | |
| CAGCTGCGGCTACCAAAGAT+GGG | + | chr1_1:5474840-5474859 | None:intergenic | 55.0% | |
| TCCGTTGGGTAAAGGGAGCT+TGG | + | chr1_1:5474968-5474987 | None:intergenic | 55.0% | |
| GACCGAATGAGCCGTGCAAT+CGG | + | chr1_1:5475028-5475047 | None:intergenic | 55.0% | |
| GTCTCCATCGTTGTAGCCAC+CGG | + | chr1_1:5475151-5475170 | None:intergenic | 55.0% | |
| AGTACCCCTGAACCTGAGCT+TGG | + | chr1_1:5476262-5476281 | None:intergenic | 55.0% | |
| GGTTGTGGAGACCATGCCTA+GGG | - | chr1_1:5476441-5476460 | Msa0003040:intron | 55.0% | |
| CATTCGCGAAGCGAGGTTCA+AGG | + | chr1_1:5476783-5476802 | None:intergenic | 55.0% | |
| GCTTCGCGAATGTTCGTCCA+AGG | - | chr1_1:5476791-5476810 | Msa0003040:CDS | 55.0% | |
| !! | GAGGAGATAGGTGGTGGTGG+TGG | + | chr1_1:5474779-5474798 | None:intergenic | 60.0% |
| GGCTACCAAAGATGGGGTGG+TGG | + | chr1_1:5474833-5474852 | None:intergenic | 60.0% | |
| TGCGGCTACCAAAGATGGGG+TGG | + | chr1_1:5474836-5474855 | None:intergenic | 60.0% | |
| CCAGCTGCGGCTACCAAAGA+TGG | + | chr1_1:5474841-5474860 | None:intergenic | 60.0% | |
| ! | CCATCTTTGGTAGCCGCAGC+TGG | - | chr1_1:5474838-5474857 | Msa0003040:three_prime_UTR | 60.0% |
| TGGTAGCCGCAGCTGGACAA+TGG | - | chr1_1:5474845-5474864 | Msa0003040:three_prime_UTR | 60.0% | |
| GGAACACTTGTCCAGACCGG+TGG | - | chr1_1:5475132-5475151 | Msa0003040:CDS | 60.0% | |
| CATCGTTGTAGCCACCGGTC+TGG | + | chr1_1:5475146-5475165 | None:intergenic | 60.0% | |
| CAGACCGGTGGCTACAACGA+TGG | - | chr1_1:5475144-5475163 | Msa0003040:CDS | 60.0% | |
| !! | TTGACGGCGGACTTGCTGCT+CGG | - | chr1_1:5475220-5475239 | Msa0003040:CDS | 60.0% |
| AAATCCCAGGTGGGGACCCT+AGG | - | chr1_1:5476230-5476249 | Msa0003040:intron | 60.0% | |
| AACTCCTAGGGTCCCCACCT+GGG | + | chr1_1:5476237-5476256 | None:intergenic | 60.0% | |
| TAACTCCTAGGGTCCCCACC+TGG | + | chr1_1:5476238-5476257 | None:intergenic | 60.0% | |
| GGGTTGTGGAGACCATGCCT+AGG | - | chr1_1:5476440-5476459 | Msa0003040:intron | 60.0% | |
| GGGACAGCAGGGTGGGAATA+CGG | - | chr1_1:5476532-5476551 | Msa0003040:intron | 60.0% | |
| GGACAGCAGGGTGGGAATAC+GGG | - | chr1_1:5476533-5476552 | Msa0003040:intron | 60.0% | |
| GGACGAACATTCGCGAAGCG+AGG | + | chr1_1:5476790-5476809 | None:intergenic | 60.0% | |
| !! | GCGGACTTGCTGCTCGGAGA+TGG | - | chr1_1:5475226-5475245 | Msa0003040:CDS | 65.0% |
| GGGTCCCCACCTGGGATTTG+AGG | + | chr1_1:5476229-5476248 | None:intergenic | 65.0% | |
| ! | GAGCGGGTTCGGGGACAGCA+GGG | - | chr1_1:5476521-5476540 | Msa0003040:intron | 70.0% |
| GGGTTCGGGGACAGCAGGGT+GGG | - | chr1_1:5476525-5476544 | Msa0003040:intron | 70.0% | |
| ! | GGAGCGGGTTCGGGGACAGC+AGG | - | chr1_1:5476520-5476539 | Msa0003040:intron | 75.0% |
| CGGGTTCGGGGACAGCAGGG+TGG | - | chr1_1:5476524-5476543 | Msa0003040:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5474713 | 5477355 | 5474713 | ID=Msa0003040;Name=Msa0003040 |
| chr1_1 | mRNA | 5474713 | 5477355 | 5474713 | ID=Msa0003040-mRNA-1;Parent=Msa0003040;Name=Msa0003040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=59|1|1|1|1|1|2|230|544 |
| chr1_1 | exon | 5474713 | 5475863 | 5474713 | ID=Msa0003040-mRNA-1:exon:1599;Parent=Msa0003040-mRNA-1 |
| chr1_1 | exon | 5476583 | 5477355 | 5476583 | ID=Msa0003040-mRNA-1:exon:1598;Parent=Msa0003040-mRNA-1 |
| chr1_1 | five_prime_UTR | 5477297 | 5477355 | 5477297 | ID=Msa0003040-mRNA-1:five_prime_utr;Parent=Msa0003040-mRNA-1 |
| chr1_1 | CDS | 5476583 | 5477296 | 5476583 | ID=Msa0003040-mRNA-1:cds;Parent=Msa0003040-mRNA-1 |
| chr1_1 | CDS | 5474943 | 5475863 | 5474943 | ID=Msa0003040-mRNA-1:cds;Parent=Msa0003040-mRNA-1 |
| chr1_1 | three_prime_UTR | 5474713 | 5474942 | 5474713 | ID=Msa0003040-mRNA-1:three_prime_utr;Parent=Msa0003040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
