Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480280 | ABY76166.1 | 99.025 | 718 | 4 | 1 | 1 | 718 | 1 | 715 | 0.0 | 1433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480280 | sp|O04015|P5CS_ACTDE | 78.691 | 718 | 150 | 1 | 1 | 718 | 1 | 715 | 0.0 | 1117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480280 | B0LSX0 | 99.025 | 718 | 4 | 1 | 1 | 718 | 1 | 715 | 0.0 | 1433 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021290 | Msa0480280 | 0.801414 | 9.107037e-49 | -8.615850e-47 |
| Msa0035730 | Msa0480280 | 0.824104 | 9.669312e-54 | -8.615850e-47 |
| Msa0073210 | Msa0480280 | 0.810488 | 1.124208e-50 | -8.615850e-47 |
| Msa0083820 | Msa0480280 | 0.803369 | 3.603431e-49 | -8.615850e-47 |
| Msa0192050 | Msa0480280 | 0.806624 | 7.514239e-50 | -8.615850e-47 |
| Msa0195230 | Msa0480280 | 0.832630 | 8.469213e-56 | -8.615850e-47 |
| Msa0195260 | Msa0480280 | 0.829442 | 5.137104e-55 | -8.615850e-47 |
| Msa0368640 | Msa0480280 | 0.968696 | 4.791263e-129 | -8.615850e-47 |
| Msa0389690 | Msa0480280 | 0.911373 | 6.542939e-83 | -8.615850e-47 |
| Msa0416020 | Msa0480280 | 0.873001 | 2.060869e-67 | -8.615850e-47 |
| Msa0430130 | Msa0480280 | 0.805006 | 1.644114e-49 | -8.615850e-47 |
| Msa0480280 | Msa0484210 | -0.820592 | 6.324141e-53 | -8.615850e-47 |
| Msa0480280 | Msa0508180 | 0.855963 | 4.431318e-62 | -8.615850e-47 |
| Msa0480280 | Msa0521510 | 0.804423 | 2.175725e-49 | -8.615850e-47 |
| Msa0480280 | Msa0540670 | 0.817478 | 3.229478e-52 | -8.615850e-47 |
| Msa0480280 | Msa0579080 | 0.822503 | 2.287258e-53 | -8.615850e-47 |
| Msa0480280 | Msa0618990 | 0.804836 | 1.784314e-49 | -8.615850e-47 |
| Msa0480280 | Msa0621320 | 0.805893 | 1.071427e-49 | -8.615850e-47 |
| Msa0480280 | Msa0630440 | 0.806061 | 9.875003e-50 | -8.615850e-47 |
| Msa0480280 | Msa0656320 | 0.819970 | 8.781064e-53 | -8.615850e-47 |
| Msa0480280 | Msa0689830 | 0.827911 | 1.204473e-54 | -8.615850e-47 |
| Msa0480280 | Msa0700120 | 0.848082 | 7.688446e-60 | -8.615850e-47 |
| Msa0480280 | Msa0707360 | 0.829860 | 4.063942e-55 | -8.615850e-47 |
| Msa0480280 | Msa0838620 | -0.816239 | 6.127121e-52 | -8.615850e-47 |
| Msa0480280 | Msa0846900 | 0.804625 | 1.974179e-49 | -8.615850e-47 |
| Msa0480280 | Msa0900830 | 0.804168 | 2.458727e-49 | -8.615850e-47 |
| Msa0480280 | Msa0926240 | 0.831384 | 1.721217e-55 | -8.615850e-47 |
| Msa0480280 | Msa0930770 | 0.810842 | 9.426165e-51 | -8.615850e-47 |
| Msa0480280 | Msa0945900 | 0.800618 | 1.324644e-48 | -8.615850e-47 |
| Msa0480280 | Msa0965800 | 0.826854 | 2.158939e-54 | -8.615850e-47 |
| Msa0480280 | Msa0981670 | 0.806200 | 9.233680e-50 | -8.615850e-47 |
| Msa0480280 | Msa1124210 | 0.833933 | 4.012168e-56 | -8.615850e-47 |
| Msa0480280 | Msa1210040 | 0.831594 | 1.527558e-55 | -8.615850e-47 |
| Msa0480280 | Msa1220580 | 0.838025 | 3.673874e-57 | -8.615850e-47 |
| Msa0480280 | Msa1259160 | 0.846112 | 2.664362e-59 | -8.615850e-47 |
| Msa0480280 | Msa1299650 | 0.846277 | 2.402525e-59 | -8.615850e-47 |
| Msa0480280 | Msa1334560 | 0.825408 | 4.765340e-54 | -8.615850e-47 |
| Msa0480280 | Msa1396100 | 0.827184 | 1.800187e-54 | -8.615850e-47 |
| Msa0480280 | Msa1449780 | 0.800102 | 1.687355e-48 | -8.615850e-47 |
| Msa0279000 | Msa0480280 | 0.807303 | 5.397737e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480280 | MtrunA17_Chr3g0112411 | 97.354 | 718 | 16 | 1 | 1 | 718 | 1 | 715 | 0.0 | 1410 |
| Msa0480280 | MtrunA17_Chr4g0008951 | 75.664 | 715 | 170 | 2 | 1 | 715 | 41 | 751 | 0.0 | 1098 |
| Msa0480280 | MtrunA17_Chr7g0239721 | 74.266 | 715 | 178 | 2 | 5 | 716 | 2 | 713 | 0.0 | 1067 |
| Msa0480280 | MtrunA17_Chr4g0053671 | 47.619 | 105 | 52 | 2 | 564 | 667 | 46 | 148 | 4.91e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480280 | AT3G55610.1 | 75.140 | 716 | 175 | 1 | 1 | 716 | 1 | 713 | 0.0 | 1078 |
| Msa0480280 | AT2G39800.1 | 74.860 | 716 | 177 | 1 | 1 | 716 | 1 | 713 | 0.0 | 1066 |
| Msa0480280 | AT2G39800.4 | 74.860 | 716 | 177 | 1 | 1 | 716 | 1 | 713 | 0.0 | 1066 |
| Msa0480280 | AT2G39800.3 | 74.441 | 716 | 177 | 2 | 1 | 716 | 1 | 710 | 0.0 | 1053 |
| Msa0480280 | AT3G55610.2 | 73.718 | 624 | 161 | 1 | 1 | 624 | 1 | 621 | 0.0 | 912 |
| Msa0480280 | AT2G39800.2 | 74.715 | 613 | 152 | 1 | 104 | 716 | 1 | 610 | 0.0 | 907 |
Find 171 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCACTTATGTGCATCTTTA+TGG | 0.086165 | 3_3:+85528148 | None:intergenic |
| TGTTGATAAATCTGCTAATT+TGG | 0.147585 | 3_3:-85526212 | Msa0480280:CDS |
| ATTCATCATATAAATCTTTA+TGG | 0.156682 | 3_3:-85525679 | Msa0480280:CDS |
| AGGATTCTTCTGGCATATTT+TGG | 0.157564 | 3_3:-85528784 | Msa0480280:CDS |
| AGATTAGCAGTTGGAAAATT+AGG | 0.160121 | 3_3:-85529971 | Msa0480280:CDS |
| TCTTGGTTATGAAGTTATTT+TGG | 0.185023 | 3_3:-85529815 | Msa0480280:CDS |
| GCTTGCAGAGGGGTTAATTT+TGG | 0.208579 | 3_3:-85527244 | Msa0480280:CDS |
| CCTTCCCAACATTAGGAAAT+TGG | 0.215317 | 3_3:-85524228 | Msa0480280:three_prime_UTR |
| CATCAAAATGAAATTACTTT+TGG | 0.217780 | 3_3:-85528620 | Msa0480280:CDS |
| TATGTAGGTGTTACTTTATA+TGG | 0.224316 | 3_3:-85525811 | Msa0480280:intron |
| ACTGTTGGTTCAAAACTTAT+TGG | 0.234157 | 3_3:-85526615 | Msa0480280:CDS |
| CATAGAAACAAAAGTGAAAT+TGG | 0.260849 | 3_3:-85530295 | None:intergenic |
| TTTCTTCTGTGTTCAGAGTT+AGG | 0.265122 | 3_3:-85524347 | Msa0480280:three_prime_UTR |
| ATTAAGGAGCTAAATATTCT+TGG | 0.303939 | 3_3:-85529832 | Msa0480280:CDS |
| GGAGAAAACGTCATCTCCTT+TGG | 0.317664 | 3_3:-85527223 | Msa0480280:CDS |
| CATGTTTCCTTCCCAACATT+AGG | 0.319769 | 3_3:-85524235 | Msa0480280:three_prime_UTR |
| GATTAGCAGTTGGAAAATTA+GGG | 0.321381 | 3_3:-85529970 | Msa0480280:CDS |
| AAACTGAACTTTGTGCAAAA+TGG | 0.325995 | 3_3:+85526752 | None:intergenic |
| GGACTGTTCCAGACGGCTTC+AGG | 0.330973 | 3_3:-85528079 | Msa0480280:intron |
| GCGTCGTTCTCATTGAATAT+TGG | 0.334868 | 3_3:+85529137 | None:intergenic |
| AAAGTTGCTTTCTAAAATCT+TGG | 0.335431 | 3_3:+85529198 | None:intergenic |
| TCGGTTTGGTGGAGAGAAAC+AGG | 0.341522 | 3_3:+85530221 | None:intergenic |
| TTTATCAGCTTTGTTGGCCT+TGG | 0.347250 | 3_3:-85528750 | Msa0480280:CDS |
| TGACAGTTTATCAGCTTTGT+TGG | 0.347433 | 3_3:-85528756 | Msa0480280:CDS |
| TTCAGCGATGGAGCACGATT+TGG | 0.347554 | 3_3:-85525230 | Msa0480280:CDS |
| TACGTTACAGGCCGTGTCTT+CGG | 0.359125 | 3_3:-85527956 | Msa0480280:intron |
| TCGACGAAAATCCCTGTTCT+AGG | 0.362437 | 3_3:-85526380 | Msa0480280:CDS |
| GGAAACACTTCTTGTTCATA+AGG | 0.364819 | 3_3:-85526041 | Msa0480280:CDS |
| ACTTCTTGTTCATAAGGATT+TGG | 0.368512 | 3_3:-85526035 | Msa0480280:CDS |
| GGGTCGGCGTTCGCCATCTT+CGG | 0.394626 | 3_3:+85530202 | None:intergenic |
| AAAATCCTTGGTTGCTAGGC+TGG | 0.395053 | 3_3:-85527821 | Msa0480280:CDS |
| TCATCAGGTGCTGTCGGCCT+CGG | 0.398416 | 3_3:-85529790 | Msa0480280:CDS |
| TTATGATGATTTGTTTAGTC+AGG | 0.400090 | 3_3:-85529422 | Msa0480280:intron |
| ATCACCAATTTCCTAATGTT+GGG | 0.401712 | 3_3:+85524224 | None:intergenic |
| CACAAGCAGGATTCATGCTC+GGG | 0.402561 | 3_3:-85525091 | Msa0480280:CDS |
| GGTAATGATAACAGGAATTC+CGG | 0.408004 | 3_3:+85528529 | None:intergenic |
| GAGAAAACGTCATCTCCTTT+GGG | 0.408409 | 3_3:-85527222 | Msa0480280:CDS |
| TTCAACAGAGAACTTGCTTT+CGG | 0.414727 | 3_3:+85525784 | None:intergenic |
| ATCAAGTAGTTAGGTCTTTG+TGG | 0.417195 | 3_3:+85524447 | None:intergenic |
| AAGCCACAAGTTGAACTTGA+TGG | 0.417920 | 3_3:-85529487 | Msa0480280:CDS |
| GGCGTTCGCCATCTTCGGTT+TGG | 0.419800 | 3_3:+85530207 | None:intergenic |
| TTTACCTGTACCAATGCATC+AGG | 0.419919 | 3_3:+85527171 | None:intergenic |
| ACAAGTTTATTGCTGCCTCT+TGG | 0.421855 | 3_3:+85526419 | None:intergenic |
| GTGCACCTGGTAATGATAAC+AGG | 0.425783 | 3_3:+85528521 | None:intergenic |
| GATCACCAATTTCCTAATGT+TGG | 0.427212 | 3_3:+85524223 | None:intergenic |
| ATTTGAACAGATAGCTTCCT+TGG | 0.437264 | 3_3:-85526835 | Msa0480280:intron |
| CATAAGGATTTGGTAGAGAA+AGG | 0.437766 | 3_3:-85526025 | Msa0480280:CDS |
| AACAATCCATCAACTCCTAC+TGG | 0.437800 | 3_3:+85525066 | None:intergenic |
| CGGGGTCCAGTAGGAGTTGA+TGG | 0.437815 | 3_3:-85525072 | Msa0480280:CDS |
| TAAAGAGACCTGAAGCCGTC+TGG | 0.452613 | 3_3:+85528071 | None:intergenic |
| TGCAATAATTCGTATGTTGT+TGG | 0.453587 | 3_3:+85527655 | None:intergenic |
| TTACCAGCATGACCTAGAAC+AGG | 0.453722 | 3_3:+85526368 | None:intergenic |
| CGAGTCTCGCCCTGATGCAT+TGG | 0.455731 | 3_3:-85527181 | Msa0480280:CDS |
| GATGTAGATGGTCTTTATAA+TGG | 0.457455 | 3_3:-85528695 | Msa0480280:CDS |
| GGCAAGGCTTGTGCTGCTGT+TGG | 0.460166 | 3_3:-85529466 | Msa0480280:CDS |
| GACAAGTCTAGGGTTGGAAG+AGG | 0.461864 | 3_3:-85528596 | Msa0480280:CDS |
| GGAAGTGGACAAGTAGTAGA+TGG | 0.465008 | 3_3:-85524491 | Msa0480280:CDS |
| ATAAATAGCTCCAAATAGAA+AGG | 0.465415 | 3_3:-85524151 | Msa0480280:three_prime_UTR |
| GTGGAGAGAAACAGGGATGA+AGG | 0.465559 | 3_3:+85530229 | None:intergenic |
| CTGTTCGTTGGCTTGCACCT+TGG | 0.468448 | 3_3:-85525728 | Msa0480280:CDS |
| GATGGAGCACGATTTGGATT+AGG | 0.469235 | 3_3:-85525224 | Msa0480280:CDS |
| TTGGCAATACGAAGTGGGAA+TGG | 0.470100 | 3_3:-85526816 | Msa0480280:CDS |
| TCAAGTAGTTAGGTCTTTGT+GGG | 0.471554 | 3_3:+85524448 | None:intergenic |
| CGAGATGGCTGTTGCCGCTA+GGG | 0.472977 | 3_3:-85528100 | Msa0480280:CDS |
| TCTGTTCATGCTGCTGATGC+CGG | 0.473603 | 3_3:-85528548 | Msa0480280:CDS |
| TGAAATACCTGAGCTACTTA+AGG | 0.475896 | 3_3:-85526574 | Msa0480280:intron |
| CAACTGCTAATCTTCCATCT+TGG | 0.478451 | 3_3:+85529981 | None:intergenic |
| GTATTCACCTTAAGTAGCTC+AGG | 0.479835 | 3_3:+85526567 | None:intergenic |
| ATCTTCTGTGACAATGGAAT+CGG | 0.485571 | 3_3:+85525552 | None:intergenic |
| TATTTCTTCGTCAAGTCGAC+AGG | 0.492040 | 3_3:-85525513 | Msa0480280:intron |
| AATCATCATAAGTAGCCATA+AGG | 0.493336 | 3_3:+85529434 | None:intergenic |
| TGTTGGACAAAGCAGCCTTA+TGG | 0.495426 | 3_3:-85529449 | Msa0480280:CDS |
| TACAATATTCAATTGAGAGA+AGG | 0.495583 | 3_3:-85524315 | Msa0480280:three_prime_UTR |
| ATAGTATTAGTGACGATTTG+CGG | 0.497386 | 3_3:-85525994 | Msa0480280:CDS |
| ATCCCTGTTCTAGGTCATGC+TGG | 0.499422 | 3_3:-85526371 | Msa0480280:intron |
| TTCATGATCTTCTGTGACAA+TGG | 0.502299 | 3_3:+85525546 | None:intergenic |
| GCGAGATGGCTGTTGCCGCT+AGG | 0.503311 | 3_3:-85528101 | Msa0480280:CDS |
| GTTCGCCATCTTCGGTTTGG+TGG | 0.504248 | 3_3:+85530210 | None:intergenic |
| AATCAGAAACAAACCTCGTA+TGG | 0.504586 | 3_3:+85529095 | None:intergenic |
| TTGGTTTCATCAGGTGCTGT+CGG | 0.505796 | 3_3:-85529796 | Msa0480280:CDS |
| GGGTACCAATACGCTGTCCT+TGG | 0.507124 | 3_3:+85528175 | None:intergenic |
| TGGCAATACGAAGTGGGAAT+GGG | 0.507240 | 3_3:-85526815 | Msa0480280:CDS |
| AGGCCGTGTCTTCGGAAGAA+AGG | 0.510241 | 3_3:-85527948 | Msa0480280:CDS |
| AGAACGACGCAGTCAGTACT+AGG | 0.510541 | 3_3:-85529124 | Msa0480280:CDS |
| ATTCTCCAAGGACAGCGTAT+TGG | 0.512269 | 3_3:-85528180 | Msa0480280:CDS |
| TGCAGGCTTCTCAAAGGAAG+TGG | 0.512350 | 3_3:-85524506 | Msa0480280:intron |
| CTGTCGGCCTCGGTCGACAA+AGG | 0.513517 | 3_3:-85529780 | Msa0480280:CDS |
| TCTCTCCACCAAACCGAAGA+TGG | 0.513853 | 3_3:-85530215 | Msa0480280:exon |
| TTTGGAGACAAGTCTAGGGT+TGG | 0.514543 | 3_3:-85528602 | Msa0480280:CDS |
| TTTGATAGTGGATCACTTGG+AGG | 0.515358 | 3_3:+85528671 | None:intergenic |
| TCCATAAAGATGCACATAAG+TGG | 0.515951 | 3_3:-85528149 | Msa0480280:CDS |
| CATACGAATTATTGCAAACA+TGG | 0.516132 | 3_3:-85527648 | Msa0480280:CDS |
| TATGTGCATCTTTATGGAAG+AGG | 0.518848 | 3_3:+85528154 | None:intergenic |
| AGGATTTGGTAGAGAAAGGC+TGG | 0.520318 | 3_3:-85526021 | Msa0480280:CDS |
| TAAATAGCTCCAAATAGAAA+GGG | 0.522122 | 3_3:-85524150 | Msa0480280:three_prime_UTR |
| ACAATATTCAATTGAGAGAA+GGG | 0.523371 | 3_3:-85524314 | Msa0480280:three_prime_UTR |
| TGAACCAACAGTATCAGGTA+TGG | 0.525984 | 3_3:+85526626 | None:intergenic |
| ACAGAAAATTGATTCAAAGT+AGG | 0.529036 | 3_3:-85529750 | Msa0480280:intron |
| GACAAAATCTCTACAAGGGT+CGG | 0.530217 | 3_3:+85530186 | None:intergenic |
| CCAATTTCCTAATGTTGGGA+AGG | 0.531730 | 3_3:+85524228 | None:intergenic |
| TCGCCCTGATGCATTGGTAC+AGG | 0.531885 | 3_3:-85527175 | Msa0480280:intron |
| GTTCAACTTGTGGCTTCTGA+AGG | 0.535455 | 3_3:+85529494 | None:intergenic |
| ACAAGTCTAGGGTTGGAAGA+GGG | 0.535997 | 3_3:-85528595 | Msa0480280:CDS |
| TTTCCTTTCTTCCGAAGACA+CGG | 0.536247 | 3_3:+85527945 | None:intergenic |
| GCTGGATGATGTAATTGATC+TGG | 0.537357 | 3_3:-85526447 | Msa0480280:CDS |
| GAATTCCTGTTATCATTACC+AGG | 0.538039 | 3_3:-85528526 | Msa0480280:intron |
| TAAATCTGCTAATTTGGAGA+TGG | 0.538816 | 3_3:-85526206 | Msa0480280:CDS |
| AAGTCTAGGGTTGGAAGAGG+GGG | 0.539406 | 3_3:-85528593 | Msa0480280:CDS |
| GCATGAAGCGACGGCAGGCA+AGG | 0.541955 | 3_3:-85524406 | Msa0480280:three_prime_UTR |
| GGGAATGGGCTTCTCTTGAA+AGG | 0.542564 | 3_3:-85526801 | Msa0480280:CDS |
| TTGCCTGCCGTCGCTTCATG+CGG | 0.545263 | 3_3:+85524408 | None:intergenic |
| GCTGTTGTTACTCGCCAAGA+TGG | 0.546330 | 3_3:-85529995 | Msa0480280:CDS |
| ATCATATAAATCTTTATGGA+AGG | 0.547903 | 3_3:-85525675 | Msa0480280:intron |
| GCACAAGCAGGATTCATGCT+CGG | 0.548409 | 3_3:-85525092 | Msa0480280:CDS |
| ACATCATGAGTACTGTTCGT+TGG | 0.551298 | 3_3:-85525740 | Msa0480280:CDS |
| GTTGTTGCTGCACAAGAAGC+AGG | 0.557805 | 3_3:-85527850 | Msa0480280:CDS |
| ATTAGGGGCACTATGTGAGC+AGG | 0.558845 | 3_3:-85529954 | Msa0480280:intron |
| ATGTGCATCTTTATGGAAGA+GGG | 0.558884 | 3_3:+85528155 | None:intergenic |
| CAAGTCTAGGGTTGGAAGAG+GGG | 0.559526 | 3_3:-85528594 | Msa0480280:CDS |
| AGTTAGGTCTTTGTGGGTGT+AGG | 0.560284 | 3_3:+85524454 | None:intergenic |
| ACAAGTTGAACTTGATGGCA+AGG | 0.561360 | 3_3:-85529482 | Msa0480280:CDS |
| TGAAAATCCGCATGAAGCGA+CGG | 0.563909 | 3_3:-85524415 | Msa0480280:three_prime_UTR |
| TGTTAAGCGCATAATCATCA+AGG | 0.564458 | 3_3:-85530158 | Msa0480280:intron |
| AGTGACGATTTGCGGTCGGA+AGG | 0.565083 | 3_3:-85525986 | Msa0480280:intron |
| TCTTTGACAAAATCTCTACA+AGG | 0.569118 | 3_3:+85530181 | None:intergenic |
| AATCCGCATGAAGCGACGGC+AGG | 0.569163 | 3_3:-85524411 | Msa0480280:three_prime_UTR |
| AGAGGTTGATGTACGCGAGA+TGG | 0.572314 | 3_3:-85528115 | Msa0480280:CDS |
| TGCCAATGCAGGCTTCTCAA+AGG | 0.574998 | 3_3:-85524512 | Msa0480280:intron |
| TAAAACCAGCCTAGCAACCA+AGG | 0.575939 | 3_3:+85527816 | None:intergenic |
| TTGATAGTGGATCACTTGGA+GGG | 0.578228 | 3_3:+85528672 | None:intergenic |
| ACCATGGCATTGCATCCTGA+TGG | 0.580281 | 3_3:+85526148 | None:intergenic |
| GGCTTGCACCTTGGAAATCG+TGG | 0.584787 | 3_3:-85525719 | Msa0480280:CDS |
| GCTATTTATTTGAACAACTG+TGG | 0.587498 | 3_3:+85524165 | None:intergenic |
| GTAGGTGTTACTTTATATGG+AGG | 0.588299 | 3_3:-85525808 | Msa0480280:intron |
| CCATAAAGATGCACATAAGT+GGG | 0.592742 | 3_3:-85528148 | Msa0480280:CDS |
| TGATGTAATGAACGAGCAAG+TGG | 0.593696 | 3_3:+85525757 | None:intergenic |
| TAATTCGTATGTTGTTGGCA+AGG | 0.595682 | 3_3:+85527660 | None:intergenic |
| AATCACGTGAGAAAGAGATC+AGG | 0.595752 | 3_3:-85527891 | Msa0480280:CDS |
| TTGCCATCAAGTTCAACTTG+TGG | 0.596653 | 3_3:+85529484 | None:intergenic |
| ACTTATTCACACATACATCA+AGG | 0.602298 | 3_3:-85528648 | Msa0480280:CDS |
| ATCTAAGCCTTTGTCGACCG+AGG | 0.602507 | 3_3:+85529773 | None:intergenic |
| ATTCATGCTCGGGGTCCAGT+AGG | 0.607413 | 3_3:-85525081 | Msa0480280:CDS |
| ATTCCCACTTCGTATTGCCA+AGG | 0.607702 | 3_3:+85526818 | None:intergenic |
| GCTTCTCTTGAAAGGAGGCA+AGG | 0.610911 | 3_3:-85526793 | Msa0480280:CDS |
| TAAGTGGGTCCCTTCAAAAG+AGG | 0.611546 | 3_3:-85528133 | Msa0480280:CDS |
| ATTAGCAGTTGGAAAATTAG+GGG | 0.611624 | 3_3:-85529969 | Msa0480280:CDS |
| AACATCATCCACGATTTCCA+AGG | 0.613354 | 3_3:+85525711 | None:intergenic |
| AATCTCACTAAAATTCTCCA+AGG | 0.618787 | 3_3:-85528192 | Msa0480280:CDS |
| AGGTTGGAATAAGCACAAGC+AGG | 0.619676 | 3_3:-85525104 | Msa0480280:CDS |
| CGGTTTGGTGGAGAGAAACA+GGG | 0.620598 | 3_3:+85530222 | None:intergenic |
| ATGGATTGTTAACAACCAGA+TGG | 0.621962 | 3_3:-85525053 | Msa0480280:intron |
| CTTCCTTGGCAATACGAAGT+GGG | 0.627539 | 3_3:-85526821 | Msa0480280:CDS |
| GCTTCCTTGGCAATACGAAG+TGG | 0.630392 | 3_3:-85526822 | Msa0480280:CDS |
| TCCATCAGGATGCAATGCCA+TGG | 0.631095 | 3_3:-85526149 | Msa0480280:intron |
| TATTAGTGACGATTTGCGGT+CGG | 0.633470 | 3_3:-85525990 | Msa0480280:CDS |
| GAAGCCATACCTGATACTGT+TGG | 0.635151 | 3_3:-85526630 | Msa0480280:CDS |
| ATAATTAAAAGAACTCCCAA+AGG | 0.641890 | 3_3:+85527207 | None:intergenic |
| GCAAACATGGAAGATCCGAT+TGG | 0.643252 | 3_3:-85527635 | Msa0480280:CDS |
| AATGGGCTTCTCTTGAAAGG+AGG | 0.649708 | 3_3:-85526798 | Msa0480280:CDS |
| CAAGATGGAAGATTAGCAGT+TGG | 0.654529 | 3_3:-85529980 | Msa0480280:CDS |
| GCTAGTACAAGATTCAGCGA+TGG | 0.668586 | 3_3:-85525242 | Msa0480280:CDS |
| CCGCTAGGGACTGTTCCAGA+CGG | 0.668873 | 3_3:-85528086 | Msa0480280:CDS |
| CTTTGACAAAATCTCTACAA+GGG | 0.672180 | 3_3:+85530182 | None:intergenic |
| TACTAGGAAAGCTCCATACG+AGG | 0.688400 | 3_3:-85529108 | Msa0480280:intron |
| TTACCTGTACCAATGCATCA+GGG | 0.694781 | 3_3:+85527172 | None:intergenic |
| ACAAGCAGGATTCATGCTCG+GGG | 0.697980 | 3_3:-85525090 | Msa0480280:CDS |
| ATTGATCTGGTGATTCCAAG+AGG | 0.700847 | 3_3:-85526434 | Msa0480280:CDS |
| TCTCTTGAAAGGAGGCAAGG+AGG | 0.705490 | 3_3:-85526790 | Msa0480280:CDS |
| TACCAGCATGACCTAGAACA+GGG | 0.710800 | 3_3:+85526369 | None:intergenic |
| ACGATTTGGATTAGGCGCAG+AGG | 0.714176 | 3_3:-85525216 | Msa0480280:intron |
| CCGTCTGGAACAGTCCCTAG+CGG | 0.716534 | 3_3:+85528086 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATAATAGAAGAAAAAT+TGG | - | chr3_3:85524474-85524493 | Msa0480280:CDS | 10.0% |
| !! | AAAAGAGAAAAATATAATTT+GGG | + | chr3_3:85525455-85525474 | None:intergenic | 10.0% |
| !! | TGTGTTAAAATAAAATAAAA+CGG | + | chr3_3:85525909-85525928 | None:intergenic | 10.0% |
| !!! | AATATATTTCTAATTGAAAA+TGG | + | chr3_3:85525944-85525963 | None:intergenic | 10.0% |
| !! | AATTAGAAATATATTAGTTA+GGG | - | chr3_3:85525949-85525968 | Msa0480280:intron | 10.0% |
| !!! | AATTCATTTTATCTAAAATA+AGG | + | chr3_3:85527375-85527394 | None:intergenic | 10.0% |
| !!! | ATTTATGCATTTTTTTTTTT+TGG | - | chr3_3:85527685-85527704 | Msa0480280:intron | 10.0% |
| !!! | TTTATGCATTTTTTTTTTTT+GGG | - | chr3_3:85527686-85527705 | Msa0480280:intron | 10.0% |
| !! | ATTATAAAGTTTATATTGTA+AGG | - | chr3_3:85528510-85528529 | Msa0480280:intron | 10.0% |
| !! | ATTTATATATGAATAATGTT+TGG | - | chr3_3:85529078-85529097 | Msa0480280:intron | 10.0% |
| !!! | GTTAATTTATCATTATATTT+TGG | - | chr3_3:85529238-85529257 | Msa0480280:CDS | 10.0% |
| !!! | TTTATTTTGATTCATTTTCA+AGG | - | chr3_3:85524347-85524366 | Msa0480280:three_prime_UTR | 15.0% |
| !!! | AAACACTTTGTTATAAATAT+GGG | - | chr3_3:85524669-85524688 | Msa0480280:intron | 15.0% |
| !! | CAAAAGAGAAAAATATAATT+TGG | + | chr3_3:85525456-85525475 | None:intergenic | 15.0% |
| !!! | AACACTTTTAAGTATTTTTT+AGG | + | chr3_3:85525552-85525571 | None:intergenic | 15.0% |
| !!! | TTATTTTAACACATTTTTTG+TGG | - | chr3_3:85525916-85525935 | Msa0480280:intron | 15.0% |
| !! | CAATTAGAAATATATTAGTT+AGG | - | chr3_3:85525948-85525967 | Msa0480280:intron | 15.0% |
| !!! | AATTTTCAAAAAATGAGAAT+CGG | + | chr3_3:85526113-85526132 | None:intergenic | 15.0% |
| !! | TTGTCAAATTATCATTTAAT+TGG | + | chr3_3:85527647-85527666 | None:intergenic | 15.0% |
| !! | ATTCATCATATAAATCTTTA+TGG | - | chr3_3:85528694-85528713 | Msa0480280:CDS | 15.0% |
| !!! | CTTTTTTTACAATGTTATTT+AGG | - | chr3_3:85528971-85528990 | Msa0480280:intron | 15.0% |
| !! | TAAAAAGAAAAATGTTTGTT+GGG | + | chr3_3:85529014-85529033 | None:intergenic | 15.0% |
| !! | TTAAAAAGAAAAATGTTTGT+TGG | + | chr3_3:85529015-85529034 | None:intergenic | 15.0% |
| !! | ATGCTATAATTACTTAATTA+TGG | + | chr3_3:85529555-85529574 | None:intergenic | 15.0% |
| !! | TAATTAAGTAATTATAGCAT+TGG | - | chr3_3:85529555-85529574 | Msa0480280:intron | 15.0% |
| !!! | TTGATTGTAATTTATTTTCT+TGG | - | chr3_3:85529998-85530017 | Msa0480280:CDS | 15.0% |
| !!! | TGATTGTAATTTATTTTCTT+GGG | - | chr3_3:85529999-85530018 | Msa0480280:CDS | 15.0% |
| !!! | TCTGTCATTTATTTTCAAAA+GGG | + | chr3_3:85524522-85524541 | None:intergenic | 20.0% |
| !!! | ATCTGTCATTTATTTTCAAA+AGG | + | chr3_3:85524523-85524542 | None:intergenic | 20.0% |
| !! | TGAAAATAAATGACAGATTA+AGG | - | chr3_3:85524525-85524544 | Msa0480280:intron | 20.0% |
| !!! | CAAACACTTTGTTATAAATA+TGG | - | chr3_3:85524668-85524687 | Msa0480280:intron | 20.0% |
| !!! | AACACTTTGTTATAAATATG+GGG | - | chr3_3:85524670-85524689 | Msa0480280:intron | 20.0% |
| !!! | TTAATTGATTTAGCATCTTA+TGG | - | chr3_3:85524992-85525011 | Msa0480280:intron | 20.0% |
| !! | TTACATCAACTTATAAACAA+TGG | + | chr3_3:85525022-85525041 | None:intergenic | 20.0% |
| !!! | TTCTTGTCAATTTCATTTTT+AGG | - | chr3_3:85525044-85525063 | Msa0480280:intron | 20.0% |
| !! | AACAAAGCATAATTTAAACT+TGG | - | chr3_3:85525305-85525324 | Msa0480280:intron | 20.0% |
| !! | TTGTGAAGAAAAAAAATTAG+TGG | - | chr3_3:85525354-85525373 | Msa0480280:intron | 20.0% |
| !!! | TTTTTTTGCTGTTATGATAT+AGG | - | chr3_3:85525406-85525425 | Msa0480280:intron | 20.0% |
| !! | TCTTTATACTGATCATTATA+TGG | - | chr3_3:85525495-85525514 | Msa0480280:intron | 20.0% |
| !!! | CATCAAAATGAAATTACTTT+TGG | - | chr3_3:85525753-85525772 | Msa0480280:CDS | 20.0% |
| !!! | GATTCTCATTTTTTGAAAAT+TGG | - | chr3_3:85526112-85526131 | Msa0480280:intron | 20.0% |
| !!! | TTTTATTTTTCTTCTTTCAG+TGG | - | chr3_3:85526145-85526164 | Msa0480280:intron | 20.0% |
| !! | GAAGAACAAAAAATATGAAA+AGG | + | chr3_3:85527233-85527252 | None:intergenic | 20.0% |
| !! | ATGATCAATCAATCTAAAAA+TGG | + | chr3_3:85527460-85527479 | None:intergenic | 20.0% |
| !!! | ATTTTATTGTCAAAATCAGA+TGG | - | chr3_3:85528123-85528142 | Msa0480280:CDS | 20.0% |
| !!! | TTTTATTGTCAAAATCAGAT+GGG | - | chr3_3:85528124-85528143 | Msa0480280:CDS | 20.0% |
| !! | AAATAACATATATTAAGGCA+TGG | + | chr3_3:85528297-85528316 | None:intergenic | 20.0% |
| !! | TTATTTAAATTTGAACTCCT+AGG | - | chr3_3:85528311-85528330 | Msa0480280:intron | 20.0% |
| !!! | AGATGATTTAAAACTTATGT+AGG | - | chr3_3:85528547-85528566 | Msa0480280:CDS | 20.0% |
| !! | ATCATATAAATCTTTATGGA+AGG | - | chr3_3:85528698-85528717 | Msa0480280:CDS | 20.0% |
| !!! | ATTATATTTTGGGCTTTAAT+AGG | - | chr3_3:85529249-85529268 | Msa0480280:CDS | 20.0% |
| !!! | AATGTTTCTAAAGTATTAGA+AGG | + | chr3_3:85529360-85529379 | None:intergenic | 20.0% |
| !! | TCAATAAATAAGCTCAAATA+AGG | - | chr3_3:85529773-85529792 | Msa0480280:CDS | 20.0% |
| !!! | AATTTTTTTCCCTTTCTATT+TGG | + | chr3_3:85530235-85530254 | None:intergenic | 20.0% |
| !!! | TTTTGATTCATTTTCAAGGT+TGG | - | chr3_3:85524351-85524370 | Msa0480280:three_prime_UTR | 25.0% |
| ! | ATTAAGGAGCTAAATATTCT+TGG | - | chr3_3:85524541-85524560 | Msa0480280:intron | 25.0% |
| !! | TCTTGGTTATGAAGTTATTT+TGG | - | chr3_3:85524558-85524577 | Msa0480280:intron | 25.0% |
| !! | ACAGAAAATTGATTCAAAGT+AGG | - | chr3_3:85524623-85524642 | Msa0480280:intron | 25.0% |
| !! | ACACTTTGTTATAAATATGG+GGG | - | chr3_3:85524671-85524690 | Msa0480280:intron | 25.0% |
| !!! | TTATGATGATTTGTTTAGTC+AGG | - | chr3_3:85524951-85524970 | Msa0480280:intron | 25.0% |
| !!! | AAAGTTGCTTTCTAAAATCT+TGG | + | chr3_3:85525178-85525197 | None:intergenic | 25.0% |
| ! | AAAGCATAATTTAAACTTGG+AGG | - | chr3_3:85525308-85525327 | Msa0480280:intron | 25.0% |
| !!! | TTTTTTCTGTCAAACAACTA+AGG | - | chr3_3:85526866-85526885 | Msa0480280:intron | 25.0% |
| !! | GATTGATTCAGTTTAAAAAG+CGG | + | chr3_3:85526892-85526911 | None:intergenic | 25.0% |
| ! | ATAATTAAAAGAACTCCCAA+AGG | + | chr3_3:85527169-85527188 | None:intergenic | 25.0% |
| ! | TCATTTATAAATCAATCGAG+AGG | + | chr3_3:85527255-85527274 | None:intergenic | 25.0% |
| !!! | TAAATGATTCTTTTTCAGCT+CGG | - | chr3_3:85527268-85527287 | Msa0480280:intron | 25.0% |
| ! | ATTACCTGAACATTTAGATA+GGG | + | chr3_3:85527719-85527738 | None:intergenic | 25.0% |
| ! | AATTACCTGAACATTTAGAT+AGG | + | chr3_3:85527720-85527739 | None:intergenic | 25.0% |
| ! | TGCAAGTATATTAAGCTTAA+AGG | + | chr3_3:85528033-85528052 | None:intergenic | 25.0% |
| !! | TGTTGATAAATCTGCTAATT+TGG | - | chr3_3:85528161-85528180 | Msa0480280:CDS | 25.0% |
| !! | ATATTGTAAGGTTTCTGAAA+TGG | - | chr3_3:85528522-85528541 | Msa0480280:intron | 25.0% |
| !!! | TATGTAGGTGTTACTTTATA+TGG | - | chr3_3:85528562-85528581 | Msa0480280:CDS | 25.0% |
| ! | CGATGTAATATTTGATTAGA+GGG | + | chr3_3:85528920-85528939 | None:intergenic | 25.0% |
| ! | TCGATGTAATATTTGATTAG+AGG | + | chr3_3:85528921-85528940 | None:intergenic | 25.0% |
| ! | TCTAATCAAATATTACATCG+AGG | - | chr3_3:85528920-85528939 | Msa0480280:intron | 25.0% |
| ! | AAAAGCTACTGATGATAAAA+AGG | + | chr3_3:85529204-85529223 | None:intergenic | 25.0% |
| ! | TCAATAAGAAAGAAACAGAA+AGG | + | chr3_3:85529392-85529411 | None:intergenic | 25.0% |
| ! | TGTTTCTTTCTTATTGAACT+AGG | - | chr3_3:85529395-85529414 | Msa0480280:intron | 25.0% |
| ! | AATTATGGTTTATCCAAACA+AGG | + | chr3_3:85529540-85529559 | None:intergenic | 25.0% |
| ! | CAGTTTATATACCAAATAGT+TGG | + | chr3_3:85529823-85529842 | None:intergenic | 25.0% |
| ! | TACAATATTCAATTGAGAGA+AGG | - | chr3_3:85530058-85530077 | Msa0480280:intron | 25.0% |
| ! | ACAATATTCAATTGAGAGAA+GGG | - | chr3_3:85530059-85530078 | Msa0480280:intron | 25.0% |
| ! | ATAAATAGCTCCAAATAGAA+AGG | - | chr3_3:85530222-85530241 | Msa0480280:five_prime_UTR | 25.0% |
| ! | TAAATAGCTCCAAATAGAAA+GGG | - | chr3_3:85530223-85530242 | Msa0480280:five_prime_UTR | 25.0% |
| CTTTGACAAAATCTCTACAA+GGG | + | chr3_3:85524194-85524213 | None:intergenic | 30.0% | |
| TCTTTGACAAAATCTCTACA+AGG | + | chr3_3:85524195-85524214 | None:intergenic | 30.0% | |
| TCACAAAACTTCAATACCAA+TGG | - | chr3_3:85524300-85524319 | Msa0480280:three_prime_UTR | 30.0% | |
| ATACCAATGGATAATGCAAA+TGG | - | chr3_3:85524313-85524332 | Msa0480280:three_prime_UTR | 30.0% | |
| AGATTAGCAGTTGGAAAATT+AGG | - | chr3_3:85524402-85524421 | Msa0480280:three_prime_UTR | 30.0% | |
| GATTAGCAGTTGGAAAATTA+GGG | - | chr3_3:85524403-85524422 | Msa0480280:three_prime_UTR | 30.0% | |
| ATTAGCAGTTGGAAAATTAG+GGG | - | chr3_3:85524404-85524423 | Msa0480280:three_prime_UTR | 30.0% | |
| !!! | GAAGTTATTTTGGTTTCATC+AGG | - | chr3_3:85524568-85524587 | Msa0480280:intron | 30.0% |
| !! | AACAACGATGATTGCTATTT+AGG | + | chr3_3:85524717-85524736 | None:intergenic | 30.0% |
| AATCATCATAAGTAGCCATA+AGG | + | chr3_3:85524942-85524961 | None:intergenic | 30.0% | |
| ! | TCTTTTGATAAATGTGTCCA+AGG | - | chr3_3:85525469-85525488 | Msa0480280:intron | 30.0% |
| ! | CTTTTGATAAATGTGTCCAA+GGG | - | chr3_3:85525470-85525489 | Msa0480280:intron | 30.0% |
| !! | AAGATCTGCTTTTAATTCCA+AGG | + | chr3_3:85525643-85525662 | None:intergenic | 30.0% |
| ! | ATTTTGTTGAGTGATGTAGA+TGG | - | chr3_3:85525666-85525685 | Msa0480280:intron | 30.0% |
| GATGTAGATGGTCTTTATAA+TGG | - | chr3_3:85525678-85525697 | Msa0480280:CDS | 30.0% | |
| !! | GTGTGAATAAGTTTTGATAG+TGG | + | chr3_3:85525717-85525736 | None:intergenic | 30.0% |
| ACTTATTCACACATACATCA+AGG | - | chr3_3:85525725-85525744 | Msa0480280:CDS | 30.0% | |
| ! | ATGAACAGAAGCTTTTACTT+TGG | + | chr3_3:85525814-85525833 | None:intergenic | 30.0% |
| TAATGCATCAACAAAGGAAA+GGG | + | chr3_3:85526031-85526050 | None:intergenic | 30.0% | |
| TCTTACTAATGCATCAACAA+AGG | + | chr3_3:85526037-85526056 | None:intergenic | 30.0% | |
| ! | AATGGATTTCATAGTGTTCT+TGG | + | chr3_3:85526070-85526089 | None:intergenic | 30.0% |
| GGAGTATGTAACATACATAA+TGG | + | chr3_3:85526088-85526107 | None:intergenic | 30.0% | |
| TTCAAAAAATGAGAATCGGA+TGG | + | chr3_3:85526109-85526128 | None:intergenic | 30.0% | |
| AATCTCACTAAAATTCTCCA+AGG | - | chr3_3:85526181-85526200 | Msa0480280:CDS | 30.0% | |
| AACAGTTAGAAAATGTCTCT+CGG | - | chr3_3:85526332-85526351 | Msa0480280:intron | 30.0% | |
| ! | ATTAGGAGATTAGCATGTTT+TGG | + | chr3_3:85526395-85526414 | None:intergenic | 30.0% |
| TGCAATAATTCGTATGTTGT+TGG | + | chr3_3:85526721-85526740 | None:intergenic | 30.0% | |
| CATACGAATTATTGCAAACA+TGG | - | chr3_3:85526725-85526744 | Msa0480280:intron | 30.0% | |
| AGTTTGCAAACAGATTACTA+AGG | + | chr3_3:85526842-85526861 | None:intergenic | 30.0% | |
| GTAAACTGTATCTACTAGTA+TGG | + | chr3_3:85526950-85526969 | None:intergenic | 30.0% | |
| CTAGTAGATACAGTTTACAA+AGG | - | chr3_3:85526952-85526971 | Msa0480280:intron | 30.0% | |
| CAATACATGACTTTATGACA+TGG | + | chr3_3:85527023-85527042 | None:intergenic | 30.0% | |
| ! | ATCAACACTATTGATTGTAC+TGG | - | chr3_3:85527055-85527074 | Msa0480280:intron | 30.0% |
| !! | TTGATTGTACTGGTTAATGA+TGG | - | chr3_3:85527065-85527084 | Msa0480280:intron | 30.0% |
| !!! | CTTTTTATTTAGCTTGCAGA+GGG | - | chr3_3:85527118-85527137 | Msa0480280:intron | 30.0% |
| !!! | TTTTTATTTAGCTTGCAGAG+GGG | - | chr3_3:85527119-85527138 | Msa0480280:intron | 30.0% |
| AAACTGAACTTTGTGCAAAA+TGG | + | chr3_3:85527624-85527643 | None:intergenic | 30.0% | |
| !! | ACTGTTGGTTCAAAACTTAT+TGG | - | chr3_3:85527758-85527777 | Msa0480280:intron | 30.0% |
| CAACAGTGCAAATTAATTTC+TGG | - | chr3_3:85527828-85527847 | Msa0480280:CDS | 30.0% | |
| !! | CTTTCTATTTGTTTTTCAGC+TGG | - | chr3_3:85527908-85527927 | Msa0480280:CDS | 30.0% |
| TAAATCTGCTAATTTGGAGA+TGG | - | chr3_3:85528167-85528186 | Msa0480280:CDS | 30.0% | |
| ACTTCTTGTTCATAAGGATT+TGG | - | chr3_3:85528338-85528357 | Msa0480280:intron | 30.0% | |
| ATAGTATTAGTGACGATTTG+CGG | - | chr3_3:85528379-85528398 | Msa0480280:intron | 30.0% | |
| ATATGAAGAGAATTATCTGC+TGG | - | chr3_3:85528433-85528452 | Msa0480280:intron | 30.0% | |
| TGATCTGTGATCTCAAAAAA+GGG | + | chr3_3:85529046-85529065 | None:intergenic | 30.0% | |
| ATGATCTGTGATCTCAAAAA+AGG | + | chr3_3:85529047-85529066 | None:intergenic | 30.0% | |
| !! | GATCACAGATCATTTTAAAG+TGG | - | chr3_3:85529054-85529073 | Msa0480280:intron | 30.0% |
| !! | TATTTTGGGCTTTAATAGGT+TGG | - | chr3_3:85529253-85529272 | Msa0480280:intron | 30.0% |
| ! | TAAAGTATTAGAAGGAGCAT+CGG | + | chr3_3:85529352-85529371 | None:intergenic | 30.0% |
| TAGCTAATCACAATTATACG+CGG | - | chr3_3:85529466-85529485 | Msa0480280:CDS | 30.0% | |
| TCAACGTTTATGACCATAAT+AGG | - | chr3_3:85529514-85529533 | Msa0480280:intron | 30.0% | |
| !! | CTTATTTCTATAAGCTCTCT+TGG | + | chr3_3:85529682-85529701 | None:intergenic | 30.0% |
| ! | CCAAATAGTTGGTGTTTATA+GGG | + | chr3_3:85529812-85529831 | None:intergenic | 30.0% |
| ! | ACCAAATAGTTGGTGTTTAT+AGG | + | chr3_3:85529813-85529832 | None:intergenic | 30.0% |
| TTGGTATATAAACTGATGCA+TGG | - | chr3_3:85529828-85529847 | Msa0480280:CDS | 30.0% | |
| GTAGCAAAAATCAAGTAGTT+AGG | + | chr3_3:85529938-85529957 | None:intergenic | 30.0% | |
| ATCACCAATTTCCTAATGTT+GGG | + | chr3_3:85530152-85530171 | None:intergenic | 30.0% | |
| GCTATTTATTTGAACAACTG+TGG | + | chr3_3:85530211-85530230 | None:intergenic | 30.0% | |
| TGTTAAGCGCATAATCATCA+AGG | - | chr3_3:85524215-85524234 | Msa0480280:three_prime_UTR | 35.0% | |
| TAGCCATTTGCATTATCCAT+TGG | + | chr3_3:85524319-85524338 | None:intergenic | 35.0% | |
| ATGGATAATGCAAATGGCTA+AGG | - | chr3_3:85524319-85524338 | Msa0480280:three_prime_UTR | 35.0% | |
| AATCAGAAACAAACCTCGTA+TGG | + | chr3_3:85525281-85525300 | None:intergenic | 35.0% | |
| GATCAGTATAAAGAAACCCT+TGG | + | chr3_3:85525489-85525508 | None:intergenic | 35.0% | |
| !!! | GTTACCTACTCATTTTTTGC+AGG | - | chr3_3:85525569-85525588 | Msa0480280:intron | 35.0% |
| GAATCCTGCAAAAAATGAGT+AGG | + | chr3_3:85525576-85525595 | None:intergenic | 35.0% | |
| !!! | CATTTTTTGCAGGATTCTTC+TGG | - | chr3_3:85525579-85525598 | Msa0480280:intron | 35.0% |
| ! | AGGATTCTTCTGGCATATTT+TGG | - | chr3_3:85525589-85525608 | Msa0480280:intron | 35.0% |
| ! | GGATTCTTCTGGCATATTTT+GGG | - | chr3_3:85525590-85525609 | Msa0480280:intron | 35.0% |
| ! | TGACAGTTTATCAGCTTTGT+TGG | - | chr3_3:85525617-85525636 | Msa0480280:intron | 35.0% |
| !!! | AGTTTTGATAGTGGATCACT+TGG | + | chr3_3:85525708-85525727 | None:intergenic | 35.0% |
| !! | TTACTTTTGGAGACAAGTCT+AGG | - | chr3_3:85525766-85525785 | Msa0480280:CDS | 35.0% |
| !! | TACTTTTGGAGACAAGTCTA+GGG | - | chr3_3:85525767-85525786 | Msa0480280:CDS | 35.0% |
| GGTAATGATAACAGGAATTC+CGG | + | chr3_3:85525847-85525866 | None:intergenic | 35.0% | |
| GAATTCCTGTTATCATTACC+AGG | - | chr3_3:85525847-85525866 | Msa0480280:intron | 35.0% | |
| AATGCATCAACAAAGGAAAG+GGG | + | chr3_3:85526030-85526049 | None:intergenic | 35.0% | |
| CTAATGCATCAACAAAGGAA+AGG | + | chr3_3:85526032-85526051 | None:intergenic | 35.0% | |
| ATGTGCATCTTTATGGAAGA+GGG | + | chr3_3:85526221-85526240 | None:intergenic | 35.0% | |
| TATGTGCATCTTTATGGAAG+AGG | + | chr3_3:85526222-85526241 | None:intergenic | 35.0% | |
| TCCATAAAGATGCACATAAG+TGG | - | chr3_3:85526224-85526243 | Msa0480280:CDS | 35.0% | |
| CCATAAAGATGCACATAAGT+GGG | - | chr3_3:85526225-85526244 | Msa0480280:CDS | 35.0% | |
| ! | GTACATCAACCTCTTTTGAA+GGG | + | chr3_3:85526252-85526271 | None:intergenic | 35.0% |
| ATCTCCTAATCTTACGTTAC+AGG | - | chr3_3:85526405-85526424 | Msa0480280:CDS | 35.0% | |
| CTATATAACTGACAGATCGT+AGG | - | chr3_3:85526690-85526709 | Msa0480280:intron | 35.0% | |
| TAATTCGTATGTTGTTGGCA+AGG | + | chr3_3:85526716-85526735 | None:intergenic | 35.0% | |
| !!! | CGTTTTAAAACTCGACCAAT+CGG | + | chr3_3:85526756-85526775 | None:intergenic | 35.0% |
| !!! | TCGAGTTTTAAAACGAACTG+AGG | - | chr3_3:85526761-85526780 | Msa0480280:CDS | 35.0% |
| CCTCTGCAAGCTAAATAAAA+AGG | + | chr3_3:85527120-85527139 | None:intergenic | 35.0% | |
| !!! | CCTTTTTATTTAGCTTGCAG+AGG | - | chr3_3:85527117-85527136 | Msa0480280:intron | 35.0% |
| ! | CCTTACTTTAGAAAAGCTGT+GGG | - | chr3_3:85527344-85527363 | Msa0480280:intron | 35.0% |
| ATTTGAACAGATAGCTTCCT+TGG | - | chr3_3:85527538-85527557 | Msa0480280:intron | 35.0% | |
| TTGACCCTATCTAAATGTTC+AGG | - | chr3_3:85527712-85527731 | Msa0480280:intron | 35.0% | |
| !!! | AGTTTTGAACCAACAGTATC+AGG | + | chr3_3:85527755-85527774 | None:intergenic | 35.0% |
| TGAAATACCTGAGCTACTTA+AGG | - | chr3_3:85527799-85527818 | Msa0480280:CDS | 35.0% | |
| TGCTCACTTTGAATAGATTG+TGG | - | chr3_3:85527861-85527880 | Msa0480280:CDS | 35.0% | |
| TATACTTGCAGTGCTTGATA+TGG | - | chr3_3:85528043-85528062 | Msa0480280:intron | 35.0% | |
| GCAAAAACAGATTATCCATC+AGG | - | chr3_3:85528210-85528229 | Msa0480280:CDS | 35.0% | |
| TCCAACACACTAAATTACCA+TGG | + | chr3_3:85528244-85528263 | None:intergenic | 35.0% | |
| !! | ATGAACAAGAAGTGTTTCCT+AGG | + | chr3_3:85528331-85528350 | None:intergenic | 35.0% |
| GGAAACACTTCTTGTTCATA+AGG | - | chr3_3:85528332-85528351 | Msa0480280:intron | 35.0% | |
| ! | CATAAGGATTTGGTAGAGAA+AGG | - | chr3_3:85528348-85528367 | Msa0480280:intron | 35.0% |
| !! | GTAGGTGTTACTTTATATGG+AGG | - | chr3_3:85528565-85528584 | Msa0480280:CDS | 35.0% |
| ! | TTCAACAGAGAACTTGCTTT+CGG | + | chr3_3:85528592-85528611 | None:intergenic | 35.0% |
| !! | TTGTTGCTATTTCCCCATTA+TGG | - | chr3_3:85528787-85528806 | Msa0480280:intron | 35.0% |
| ATCTTCTGTGACAATGGAAT+CGG | + | chr3_3:85528824-85528843 | None:intergenic | 35.0% | |
| TTCATGATCTTCTGTGACAA+TGG | + | chr3_3:85528830-85528849 | None:intergenic | 35.0% | |
| ! | ATCATCAGTAGCTTTTGCTA+AGG | - | chr3_3:85529208-85529227 | Msa0480280:CDS | 35.0% |
| ! | ATGGATTGTTAACAACCAGA+TGG | - | chr3_3:85529320-85529339 | Msa0480280:intron | 35.0% |
| TATCCAAACAAGGCCTATTA+TGG | + | chr3_3:85529530-85529549 | None:intergenic | 35.0% | |
| TTCTATAAGCTCTCTTGGAT+AGG | + | chr3_3:85529677-85529696 | None:intergenic | 35.0% | |
| AGAGCTATGGAAACATCTTA+TGG | + | chr3_3:85529727-85529746 | None:intergenic | 35.0% | |
| CCCTATAAACACCAACTATT+TGG | - | chr3_3:85529809-85529828 | Msa0480280:CDS | 35.0% | |
| GATTATTCATTTGCCAATGC+AGG | - | chr3_3:85529850-85529869 | Msa0480280:intron | 35.0% | |
| TCAAGTAGTTAGGTCTTTGT+GGG | + | chr3_3:85529928-85529947 | None:intergenic | 35.0% | |
| ATCAAGTAGTTAGGTCTTTG+TGG | + | chr3_3:85529929-85529948 | None:intergenic | 35.0% | |
| TTTCTTCTGTGTTCAGAGTT+AGG | - | chr3_3:85530026-85530045 | Msa0480280:intron | 35.0% | |
| GATCACCAATTTCCTAATGT+TGG | + | chr3_3:85530153-85530172 | None:intergenic | 35.0% | |
| GACAAAATCTCTACAAGGGT+CGG | + | chr3_3:85524190-85524209 | None:intergenic | 40.0% | |
| CAACTGCTAATCTTCCATCT+TGG | + | chr3_3:85524395-85524414 | None:intergenic | 40.0% | |
| CAAGATGGAAGATTAGCAGT+TGG | - | chr3_3:85524393-85524412 | Msa0480280:three_prime_UTR | 40.0% | |
| ! | TACATACCGTTTGAAGTGCT+AGG | - | chr3_3:85524768-85524787 | Msa0480280:intron | 40.0% |
| ! | ACATACCGTTTGAAGTGCTA+GGG | - | chr3_3:85524769-85524788 | Msa0480280:intron | 40.0% |
| TATACCCCTAGCACTTCAAA+CGG | + | chr3_3:85524777-85524796 | None:intergenic | 40.0% | |
| ! | AAGCCACAAGTTGAACTTGA+TGG | - | chr3_3:85524886-85524905 | Msa0480280:intron | 40.0% |
| TTGCCATCAAGTTCAACTTG+TGG | + | chr3_3:85524892-85524911 | None:intergenic | 40.0% | |
| ! | ACAAGTTGAACTTGATGGCA+AGG | - | chr3_3:85524891-85524910 | Msa0480280:intron | 40.0% |
| GCGTCGTTCTCATTGAATAT+TGG | + | chr3_3:85525239-85525258 | None:intergenic | 40.0% | |
| !! | TTTATCAGCTTTGTTGGCCT+TGG | - | chr3_3:85525623-85525642 | Msa0480280:intron | 40.0% |
| !! | TTGATAGTGGATCACTTGGA+GGG | + | chr3_3:85525704-85525723 | None:intergenic | 40.0% |
| !! | TTTGATAGTGGATCACTTGG+AGG | + | chr3_3:85525705-85525724 | None:intergenic | 40.0% |
| AAATAAATCAGCAGTGCACC+TGG | + | chr3_3:85525868-85525887 | None:intergenic | 40.0% | |
| ATGCATCAACAAAGGAAAGG+GGG | + | chr3_3:85526029-85526048 | None:intergenic | 40.0% | |
| CCCACTTATGTGCATCTTTA+TGG | + | chr3_3:85526228-85526247 | None:intergenic | 40.0% | |
| ! | CGTACATCAACCTCTTTTGA+AGG | + | chr3_3:85526253-85526272 | None:intergenic | 40.0% |
| ! | ACTGAAGCTTGGTAATATCC+AGG | + | chr3_3:85526360-85526379 | None:intergenic | 40.0% |
| ACGAACGATATACTGAAGCT+TGG | + | chr3_3:85526371-85526390 | None:intergenic | 40.0% | |
| TTTCCTTTCTTCCGAAGACA+CGG | + | chr3_3:85526431-85526450 | None:intergenic | 40.0% | |
| AATCACGTGAGAAAGAGATC+AGG | - | chr3_3:85526482-85526501 | Msa0480280:intron | 40.0% | |
| AGCAGGATACGAAAAATCCT+TGG | - | chr3_3:85526540-85526559 | Msa0480280:intron | 40.0% | |
| ACGAAAAATCCTTGGTTGCT+AGG | - | chr3_3:85526548-85526567 | Msa0480280:intron | 40.0% | |
| !!! | GCTGGTTTTAAAGAGTGAGA+AGG | - | chr3_3:85526570-85526589 | Msa0480280:intron | 40.0% |
| GAGAAAACGTCATCTCCTTT+GGG | - | chr3_3:85527151-85527170 | Msa0480280:intron | 40.0% | |
| TTACCTGTACCAATGCATCA+GGG | + | chr3_3:85527204-85527223 | None:intergenic | 40.0% | |
| TTTACCTGTACCAATGCATC+AGG | + | chr3_3:85527205-85527224 | None:intergenic | 40.0% | |
| ! | GCCTTACTTTAGAAAAGCTG+TGG | - | chr3_3:85527343-85527362 | Msa0480280:intron | 40.0% |
| !!! | CCCACAGCTTTTCTAAAGTA+AGG | + | chr3_3:85527347-85527366 | None:intergenic | 40.0% |
| ! | ACTTTAGAAAAGCTGTGGGT+CGG | - | chr3_3:85527348-85527367 | Msa0480280:intron | 40.0% |
| TGAACCAACAGTATCAGGTA+TGG | + | chr3_3:85527750-85527769 | None:intergenic | 40.0% | |
| GTATTCACCTTAAGTAGCTC+AGG | + | chr3_3:85527809-85527828 | None:intergenic | 40.0% | |
| GCTGGATGATGTAATTGATC+TGG | - | chr3_3:85527926-85527945 | Msa0480280:CDS | 40.0% | |
| ATTGATCTGGTGATTCCAAG+AGG | - | chr3_3:85527939-85527958 | Msa0480280:CDS | 40.0% | |
| ACAAGTTTATTGCTGCCTCT+TGG | + | chr3_3:85527957-85527976 | None:intergenic | 40.0% | |
| TTGCAGTGCTTGATATGGTA+TGG | - | chr3_3:85528048-85528067 | Msa0480280:intron | 40.0% | |
| GCCATGGTAATTTAGTGTGT+TGG | - | chr3_3:85528240-85528259 | Msa0480280:intron | 40.0% | |
| TATTAGTGACGATTTGCGGT+CGG | - | chr3_3:85528383-85528402 | Msa0480280:intron | 40.0% | |
| TGATGTAATGAACGAGCAAG+TGG | + | chr3_3:85528619-85528638 | None:intergenic | 40.0% | |
| ! | ACATCATGAGTACTGTTCGT+TGG | - | chr3_3:85528633-85528652 | Msa0480280:CDS | 40.0% |
| AACATCATCCACGATTTCCA+AGG | + | chr3_3:85528665-85528684 | None:intergenic | 40.0% | |
| TATTTCTTCGTCAAGTCGAC+AGG | - | chr3_3:85528860-85528879 | Msa0480280:intron | 40.0% | |
| AACAATCCATCAACTCCTAC+TGG | + | chr3_3:85529310-85529329 | None:intergenic | 40.0% | |
| !! | TGACCATAATAGGCCTTGTT+TGG | - | chr3_3:85529524-85529543 | Msa0480280:intron | 40.0% |
| ! | TGGTGTTTATAGGGCTTGTT+TGG | + | chr3_3:85529803-85529822 | None:intergenic | 40.0% |
| CATGTTTCCTTCCCAACATT+AGG | - | chr3_3:85530138-85530157 | Msa0480280:intron | 40.0% | |
| CCAATTTCCTAATGTTGGGA+AGG | + | chr3_3:85530148-85530167 | None:intergenic | 40.0% | |
| CCTTCCCAACATTAGGAAAT+TGG | - | chr3_3:85530145-85530164 | Msa0480280:intron | 40.0% | |
| ! | TTGGTTTCATCAGGTGCTGT+CGG | - | chr3_3:85524577-85524596 | Msa0480280:intron | 45.0% |
| ! | CATACCGTTTGAAGTGCTAG+GGG | - | chr3_3:85524770-85524789 | Msa0480280:intron | 45.0% |
| GTTCAACTTGTGGCTTCTGA+AGG | + | chr3_3:85524882-85524901 | None:intergenic | 45.0% | |
| TGTTGGACAAAGCAGCCTTA+TGG | - | chr3_3:85524924-85524943 | Msa0480280:intron | 45.0% | |
| CTACCTGTTTGTCTTGTAGC+TGG | - | chr3_3:85525106-85525125 | Msa0480280:intron | 45.0% | |
| CATCCAGCTACAAGACAAAC+AGG | + | chr3_3:85525112-85525131 | None:intergenic | 45.0% | |
| TACTAGGAAAGCTCCATACG+AGG | - | chr3_3:85525265-85525284 | Msa0480280:intron | 45.0% | |
| ! | TTTGGAGACAAGTCTAGGGT+TGG | - | chr3_3:85525771-85525790 | Msa0480280:CDS | 45.0% |
| ! | ACAAGTCTAGGGTTGGAAGA+GGG | - | chr3_3:85525778-85525797 | Msa0480280:CDS | 45.0% |
| ! | GTGCACCTGGTAATGATAAC+AGG | + | chr3_3:85525855-85525874 | None:intergenic | 45.0% |
| ATTCTCCAAGGACAGCGTAT+TGG | - | chr3_3:85526193-85526212 | Msa0480280:CDS | 45.0% | |
| TAAGTGGGTCCCTTCAAAAG+AGG | - | chr3_3:85526240-85526259 | Msa0480280:intron | 45.0% | |
| AGAAAATGTCTCTCGGATCC+TGG | - | chr3_3:85526339-85526358 | Msa0480280:intron | 45.0% | |
| ACGGCCTGTAACGTAAGATT+AGG | + | chr3_3:85526412-85526431 | None:intergenic | 45.0% | |
| AAAATCCTTGGTTGCTAGGC+TGG | - | chr3_3:85526552-85526571 | Msa0480280:intron | 45.0% | |
| TAAAACCAGCCTAGCAACCA+AGG | + | chr3_3:85526560-85526579 | None:intergenic | 45.0% | |
| GCAAACATGGAAGATCCGAT+TGG | - | chr3_3:85526738-85526757 | Msa0480280:intron | 45.0% | |
| ! | GCTTGCAGAGGGGTTAATTT+TGG | - | chr3_3:85527129-85527148 | Msa0480280:intron | 45.0% |
| GGAGAAAACGTCATCTCCTT+TGG | - | chr3_3:85527150-85527169 | Msa0480280:intron | 45.0% | |
| AGATACTGTCTACCAAGCTG+TGG | - | chr3_3:85527315-85527334 | Msa0480280:intron | 45.0% | |
| GATACTGTCTACCAAGCTGT+GGG | - | chr3_3:85527316-85527335 | Msa0480280:intron | 45.0% | |
| CTTCCTTGGCAATACGAAGT+GGG | - | chr3_3:85527552-85527571 | Msa0480280:intron | 45.0% | |
| ATTCCCACTTCGTATTGCCA+AGG | + | chr3_3:85527558-85527577 | None:intergenic | 45.0% | |
| TTGGCAATACGAAGTGGGAA+TGG | - | chr3_3:85527557-85527576 | Msa0480280:intron | 45.0% | |
| TGGCAATACGAAGTGGGAAT+GGG | - | chr3_3:85527558-85527577 | Msa0480280:intron | 45.0% | |
| ! | AATGGGCTTCTCTTGAAAGG+AGG | - | chr3_3:85527575-85527594 | Msa0480280:intron | 45.0% |
| GAAGCCATACCTGATACTGT+TGG | - | chr3_3:85527743-85527762 | Msa0480280:intron | 45.0% | |
| TGTGGCACATTTCACTAAGC+TGG | - | chr3_3:85527879-85527898 | Msa0480280:CDS | 45.0% | |
| TCGACGAAAATCCCTGTTCT+AGG | - | chr3_3:85527993-85528012 | Msa0480280:intron | 45.0% | |
| TACCAGCATGACCTAGAACA+GGG | + | chr3_3:85528007-85528026 | None:intergenic | 45.0% | |
| TTACCAGCATGACCTAGAAC+AGG | + | chr3_3:85528008-85528027 | None:intergenic | 45.0% | |
| ! | AGGATTTGGTAGAGAAAGGC+TGG | - | chr3_3:85528352-85528371 | Msa0480280:intron | 45.0% |
| GTATGTGCACTGCCATAATG+GGG | + | chr3_3:85528802-85528821 | None:intergenic | 45.0% | |
| GGTATGTGCACTGCCATAAT+GGG | + | chr3_3:85528803-85528822 | None:intergenic | 45.0% | |
| GCTAGTACAAGATTCAGCGA+TGG | - | chr3_3:85529131-85529150 | Msa0480280:CDS | 45.0% | |
| ! | GATGGAGCACGATTTGGATT+AGG | - | chr3_3:85529149-85529168 | Msa0480280:CDS | 45.0% |
| AGGTTGGAATAAGCACAAGC+AGG | - | chr3_3:85529269-85529288 | Msa0480280:intron | 45.0% | |
| GCGACTGTTTATGAGAGCTA+TGG | + | chr3_3:85529740-85529759 | None:intergenic | 45.0% | |
| ! | TTCCTTTGAGAAGCCTGCAT+TGG | + | chr3_3:85529866-85529885 | None:intergenic | 45.0% |
| GGAAGTGGACAAGTAGTAGA+TGG | - | chr3_3:85529882-85529901 | Msa0480280:intron | 45.0% | |
| AGTTAGGTCTTTGTGGGTGT+AGG | + | chr3_3:85529922-85529941 | None:intergenic | 45.0% | |
| TGAAAATCCGCATGAAGCGA+CGG | - | chr3_3:85529958-85529977 | Msa0480280:CDS | 45.0% | |
| !!! | TTTTTTTCAATTTTATTTTA+AGG | - | chr3_3:85524807-85524826 | Msa0480280:intron | 5.0% |
| !! | AATTTAAATAACATATATTA+AGG | + | chr3_3:85528302-85528321 | None:intergenic | 5.0% |
| !!! | TTAATTTATCATTATATTTT+GGG | - | chr3_3:85529239-85529258 | Msa0480280:CDS | 5.0% |
| GTGGAGAGAAACAGGGATGA+AGG | + | chr3_3:85524147-85524166 | None:intergenic | 50.0% | |
| !! | CGGTTTGGTGGAGAGAAACA+GGG | + | chr3_3:85524154-85524173 | None:intergenic | 50.0% |
| !! | TCGGTTTGGTGGAGAGAAAC+AGG | + | chr3_3:85524155-85524174 | None:intergenic | 50.0% |
| TCTCTCCACCAAACCGAAGA+TGG | - | chr3_3:85524158-85524177 | Msa0480280:three_prime_UTR | 50.0% | |
| GCTGTTGTTACTCGCCAAGA+TGG | - | chr3_3:85524378-85524397 | Msa0480280:three_prime_UTR | 50.0% | |
| !! | ATTAGGGGCACTATGTGAGC+AGG | - | chr3_3:85524419-85524438 | Msa0480280:three_prime_UTR | 50.0% |
| ATCTAAGCCTTTGTCGACCG+AGG | + | chr3_3:85524603-85524622 | None:intergenic | 50.0% | |
| ATGGGGGCTTCACAACAACA+TGG | - | chr3_3:85524687-85524706 | Msa0480280:intron | 50.0% | |
| TGGGGGCTTCACAACAACAT+GGG | - | chr3_3:85524688-85524707 | Msa0480280:intron | 50.0% | |
| AGAACGACGCAGTCAGTACT+AGG | - | chr3_3:85525249-85525268 | Msa0480280:CDS | 50.0% | |
| ! | GACAAGTCTAGGGTTGGAAG+AGG | - | chr3_3:85525777-85525796 | Msa0480280:CDS | 50.0% |
| ! | CAAGTCTAGGGTTGGAAGAG+GGG | - | chr3_3:85525779-85525798 | Msa0480280:CDS | 50.0% |
| ! | AAGTCTAGGGTTGGAAGAGG+GGG | - | chr3_3:85525780-85525799 | Msa0480280:CDS | 50.0% |
| TCTGTTCATGCTGCTGATGC+CGG | - | chr3_3:85525825-85525844 | Msa0480280:intron | 50.0% | |
| !! | AGAGGTTGATGTACGCGAGA+TGG | - | chr3_3:85526258-85526277 | Msa0480280:intron | 50.0% |
| TAAAGAGACCTGAAGCCGTC+TGG | + | chr3_3:85526305-85526324 | None:intergenic | 50.0% | |
| TACGTTACAGGCCGTGTCTT+CGG | - | chr3_3:85526417-85526436 | Msa0480280:CDS | 50.0% | |
| GTTGTTGCTGCACAAGAAGC+AGG | - | chr3_3:85526523-85526542 | Msa0480280:intron | 50.0% | |
| GCTTCCTTGGCAATACGAAG+TGG | - | chr3_3:85527551-85527570 | Msa0480280:intron | 50.0% | |
| ! | GGGAATGGGCTTCTCTTGAA+AGG | - | chr3_3:85527572-85527591 | Msa0480280:intron | 50.0% |
| GCTTCTCTTGAAAGGAGGCA+AGG | - | chr3_3:85527580-85527599 | Msa0480280:intron | 50.0% | |
| TCTCTTGAAAGGAGGCAAGG+AGG | - | chr3_3:85527583-85527602 | Msa0480280:intron | 50.0% | |
| ! | ATCCCTGTTCTAGGTCATGC+TGG | - | chr3_3:85528002-85528021 | Msa0480280:intron | 50.0% |
| TCCATCAGGATGCAATGCCA+TGG | - | chr3_3:85528224-85528243 | Msa0480280:intron | 50.0% | |
| ACCATGGCATTGCATCCTGA+TGG | + | chr3_3:85528228-85528247 | None:intergenic | 50.0% | |
| CGGTATGTGCACTGCCATAA+TGG | + | chr3_3:85528804-85528823 | None:intergenic | 50.0% | |
| TTCAGCGATGGAGCACGATT+TGG | - | chr3_3:85529143-85529162 | Msa0480280:CDS | 50.0% | |
| ! | ACGATTTGGATTAGGCGCAG+AGG | - | chr3_3:85529157-85529176 | Msa0480280:CDS | 50.0% |
| GCACAAGCAGGATTCATGCT+CGG | - | chr3_3:85529281-85529300 | Msa0480280:intron | 50.0% | |
| CACAAGCAGGATTCATGCTC+GGG | - | chr3_3:85529282-85529301 | Msa0480280:intron | 50.0% | |
| ACAAGCAGGATTCATGCTCG+GGG | - | chr3_3:85529283-85529302 | Msa0480280:intron | 50.0% | |
| !! | GAGCATCGGCTTATACCATC+TGG | + | chr3_3:85529338-85529357 | None:intergenic | 50.0% |
| TGCCAATGCAGGCTTCTCAA+AGG | - | chr3_3:85529861-85529880 | Msa0480280:intron | 50.0% | |
| TGCAGGCTTCTCAAAGGAAG+TGG | - | chr3_3:85529867-85529886 | Msa0480280:intron | 50.0% | |
| !! | GTTCGCCATCTTCGGTTTGG+TGG | + | chr3_3:85524166-85524185 | None:intergenic | 55.0% |
| GGGCTTCACAACAACATGGG+CGG | - | chr3_3:85524691-85524710 | Msa0480280:intron | 55.0% | |
| GGGTACCAATACGCTGTCCT+TGG | + | chr3_3:85526201-85526220 | None:intergenic | 55.0% | |
| AGGCCGTGTCTTCGGAAGAA+AGG | - | chr3_3:85526425-85526444 | Msa0480280:CDS | 55.0% | |
| ! | TCGCCCTGATGCATTGGTAC+AGG | - | chr3_3:85527198-85527217 | Msa0480280:CDS | 55.0% |
| CTGTCTACCAAGCTGTGGGT+CGG | - | chr3_3:85527320-85527339 | Msa0480280:intron | 55.0% | |
| TGTCTACCAAGCTGTGGGTC+GGG | - | chr3_3:85527321-85527340 | Msa0480280:intron | 55.0% | |
| AGTGACGATTTGCGGTCGGA+AGG | - | chr3_3:85528387-85528406 | Msa0480280:intron | 55.0% | |
| !! | CTGTTCGTTGGCTTGCACCT+TGG | - | chr3_3:85528645-85528664 | Msa0480280:CDS | 55.0% |
| GGCTTGCACCTTGGAAATCG+TGG | - | chr3_3:85528654-85528673 | Msa0480280:CDS | 55.0% | |
| ATTCATGCTCGGGGTCCAGT+AGG | - | chr3_3:85529292-85529311 | Msa0480280:intron | 55.0% | |
| GGCGTTCGCCATCTTCGGTT+TGG | + | chr3_3:85524169-85524188 | None:intergenic | 60.0% | |
| ! | TCATCAGGTGCTGTCGGCCT+CGG | - | chr3_3:85524583-85524602 | Msa0480280:intron | 60.0% |
| ! | GGCAAGGCTTGTGCTGCTGT+TGG | - | chr3_3:85524907-85524926 | Msa0480280:intron | 60.0% |
| CGAGATGGCTGTTGCCGCTA+GGG | - | chr3_3:85526273-85526292 | Msa0480280:intron | 60.0% | |
| ! | CCGTCTGGAACAGTCCCTAG+CGG | + | chr3_3:85526290-85526309 | None:intergenic | 60.0% |
| CCGCTAGGGACTGTTCCAGA+CGG | - | chr3_3:85526287-85526306 | Msa0480280:intron | 60.0% | |
| GGACTGTTCCAGACGGCTTC+AGG | - | chr3_3:85526294-85526313 | Msa0480280:intron | 60.0% | |
| CGAGTCTCGCCCTGATGCAT+TGG | - | chr3_3:85527192-85527211 | Msa0480280:CDS | 60.0% | |
| CGGGGTCCAGTAGGAGTTGA+TGG | - | chr3_3:85529301-85529320 | Msa0480280:intron | 60.0% | |
| AATCCGCATGAAGCGACGGC+AGG | - | chr3_3:85529962-85529981 | Msa0480280:CDS | 60.0% | |
| TTGCCTGCCGTCGCTTCATG+CGG | + | chr3_3:85529968-85529987 | None:intergenic | 60.0% | |
| GGGTCGGCGTTCGCCATCTT+CGG | + | chr3_3:85524174-85524193 | None:intergenic | 65.0% | |
| CTGTCGGCCTCGGTCGACAA+AGG | - | chr3_3:85524593-85524612 | Msa0480280:intron | 65.0% | |
| GCGAGATGGCTGTTGCCGCT+AGG | - | chr3_3:85526272-85526291 | Msa0480280:intron | 65.0% | |
| GTAAGGCCCGACCCACAGCT+TGG | + | chr3_3:85527330-85527349 | None:intergenic | 65.0% | |
| GCATGAAGCGACGGCAGGCA+AGG | - | chr3_3:85529967-85529986 | Msa0480280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85524091 | 85530304 | 85524091 | ID=Msa0480280;Name=Msa0480280 |
| chr3_3 | mRNA | 85524091 | 85530304 | 85524091 | ID=Msa0480280-mRNA-1;Parent=Msa0480280;Name=Msa0480280-mRNA-1;_AED=0.12;_eAED=0.12;_QI=86|0.94|0.95|1|1|1|20|357|718 |
| chr3_3 | exon | 85524091 | 85524523 | 85524091 | ID=Msa0480280-mRNA-1:exon:24622;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85525054 | 85525124 | 85525054 | ID=Msa0480280-mRNA-1:exon:24621;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85525217 | 85525283 | 85525217 | ID=Msa0480280-mRNA-1:exon:24620;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85525514 | 85525582 | 85525514 | ID=Msa0480280-mRNA-1:exon:24619;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85525676 | 85525826 | 85525676 | ID=Msa0480280-mRNA-1:exon:24618;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85525987 | 85526062 | 85525987 | ID=Msa0480280-mRNA-1:exon:24617;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85526150 | 85526253 | 85526150 | ID=Msa0480280-mRNA-1:exon:24616;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85526372 | 85526468 | 85526372 | ID=Msa0480280-mRNA-1:exon:24615;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85526575 | 85526661 | 85526575 | ID=Msa0480280-mRNA-1:exon:24614;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85526761 | 85526847 | 85526761 | ID=Msa0480280-mRNA-1:exon:24613;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85527176 | 85527265 | 85527176 | ID=Msa0480280-mRNA-1:exon:24612;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85527613 | 85527683 | 85527613 | ID=Msa0480280-mRNA-1:exon:24611;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85527788 | 85527968 | 85527788 | ID=Msa0480280-mRNA-1:exon:24610;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85528080 | 85528230 | 85528080 | ID=Msa0480280-mRNA-1:exon:24609;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85528527 | 85528804 | 85528527 | ID=Msa0480280-mRNA-1:exon:24608;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85529109 | 85529270 | 85529109 | ID=Msa0480280-mRNA-1:exon:24607;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85529423 | 85529525 | 85529423 | ID=Msa0480280-mRNA-1:exon:24606;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85529751 | 85529854 | 85529751 | ID=Msa0480280-mRNA-1:exon:24605;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85529955 | 85530026 | 85529955 | ID=Msa0480280-mRNA-1:exon:24604;Parent=Msa0480280-mRNA-1 |
| chr3_3 | exon | 85530159 | 85530304 | 85530159 | ID=Msa0480280-mRNA-1:exon:24603;Parent=Msa0480280-mRNA-1 |
| chr3_3 | five_prime_UTR | 85530219 | 85530304 | 85530219 | ID=Msa0480280-mRNA-1:five_prime_utr;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85530159 | 85530218 | 85530159 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85529955 | 85530026 | 85529955 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85529751 | 85529854 | 85529751 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85529423 | 85529525 | 85529423 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85529109 | 85529270 | 85529109 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85528527 | 85528804 | 85528527 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85528080 | 85528230 | 85528080 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85527788 | 85527968 | 85527788 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85527613 | 85527683 | 85527613 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85527176 | 85527265 | 85527176 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85526761 | 85526847 | 85526761 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85526575 | 85526661 | 85526575 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85526372 | 85526468 | 85526372 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85526150 | 85526253 | 85526150 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85525987 | 85526062 | 85525987 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85525676 | 85525826 | 85525676 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85525514 | 85525582 | 85525514 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85525217 | 85525283 | 85525217 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85525054 | 85525124 | 85525054 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | CDS | 85524448 | 85524523 | 85524448 | ID=Msa0480280-mRNA-1:cds;Parent=Msa0480280-mRNA-1 |
| chr3_3 | three_prime_UTR | 85524091 | 85524447 | 85524091 | ID=Msa0480280-mRNA-1:three_prime_utr;Parent=Msa0480280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
