AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1424640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424640 MtrunA17_Chr2g0290151 98.696 460 2 1 1 456 1 460 0.0 912
Msa1424640 MtrunA17_Chr1g0152561 44.444 360 161 2 98 448 9 338 6.42e-92 282
Msa1424640 MtrunA17_Chr3g0134761 48.693 306 141 3 152 453 44 337 2.94e-90 278
Msa1424640 MtrunA17_Chr1g0183781 52.330 279 132 1 175 453 444 721 3.53e-82 268
Msa1424640 MtrunA17_Chr3g0106931 50.530 283 139 1 167 449 549 830 1.74e-76 255
Msa1424640 MtrunA17_Chr7g0261371 50.000 278 138 1 175 452 518 794 8.87e-76 252
Msa1424640 MtrunA17_Chr4g0044411 44.444 279 155 0 171 449 373 651 6.29e-68 228
Msa1424640 MtrunA17_Chr4g0031431 47.547 265 139 0 186 450 368 632 7.39e-68 228
Msa1424640 MtrunA17_Chr1g0199321 47.518 282 148 0 171 452 345 626 1.29e-67 227
Msa1424640 MtrunA17_Chr7g0237931 44.944 267 145 1 178 444 341 605 3.98e-61 209
Msa1424640 MtrunA17_Chr7g0248251 39.721 287 173 0 163 449 359 645 9.58e-58 201
Msa1424640 MtrunA17_Chr5g0437411 40.532 301 173 5 150 444 383 683 2.18e-52 187
Msa1424640 MtrunA17_Chr2g0282351 75.238 105 17 2 1 105 1 96 2.16e-42 145
Msa1424640 MtrunA17_Chr2g0284461 35.762 302 182 8 152 445 377 674 1.84e-35 139
Msa1424640 MtrunA17_Chr5g0429231 35.959 292 182 4 170 456 33 324 1.77e-34 132
Msa1424640 MtrunA17_Chr8g0377151 34.783 276 169 6 186 452 443 716 6.45e-30 123
Msa1424640 MtrunA17_Chr7g0275081 34.783 276 170 6 180 447 180 453 1.66e-27 114
Msa1424640 MtrunA17_Chr3g0118001 32.472 271 178 2 178 445 218 486 2.04e-27 114
Msa1424640 MtrunA17_Chr6g0449461 33.793 290 179 7 175 455 6 291 3.52e-26 108
Msa1424640 MtrunA17_Chr4g0059201 31.636 275 181 6 186 453 437 711 1.60e-25 110
Msa1424640 MtrunA17_Chr3g0122721 33.086 269 164 8 192 449 448 711 9.73e-25 107
Msa1424640 MtrunA17_Chr4g0048811 33.333 204 129 5 245 445 121 320 5.25e-24 102
Msa1424640 MtrunA17_Chr7g0234671 30.142 282 184 8 173 445 173 450 1.78e-23 102
Msa1424640 MtrunA17_Chr5g0435041 30.800 250 134 5 203 451 92 303 7.27e-22 97.1
Msa1424640 MtrunA17_Chr2g0280671 31.698 265 165 5 192 449 128 383 8.05e-21 94.0
Msa1424640 MtrunA17_Chr1g0189811 33.333 273 161 8 186 444 171 436 8.01e-20 91.7
Msa1424640 MtrunA17_Chr1g0199031 38.333 120 57 1 245 364 15 117 8.97e-20 85.1
Msa1424640 MtrunA17_Chr6g0451581 29.469 207 144 1 175 381 242 446 9.03e-20 92.0
Msa1424640 MtrunA17_Chr3g0111451 32.389 247 126 5 203 447 113 320 4.81e-19 89.0
Msa1424640 MtrunA17_Chr1g0149941 29.412 272 178 7 186 445 189 458 1.20e-18 88.6
Msa1424640 MtrunA17_Chr3g0137061 28.859 298 198 7 160 445 99 394 1.54e-18 87.8
Msa1424640 MtrunA17_Chr3g0117851 28.782 271 143 8 186 446 393 623 1.25e-17 85.5
Msa1424640 MtrunA17_Chr4g0013091 31.900 279 145 10 192 445 439 697 1.02e-16 82.8
Msa1424640 MtrunA17_Chr5g0413681 30.877 285 189 6 178 454 390 674 6.55e-15 77.4
Msa1424640 MtrunA17_Chr8g0353271 27.740 292 193 8 170 444 7 297 3.05e-13 70.9
Msa1424640 MtrunA17_Chr5g0394261 27.698 278 181 10 185 447 118 390 9.09e-13 70.5
Msa1424640 MtrunA17_Chr5g0394261 28.436 211 145 3 169 377 197 403 3.32e-11 65.5
Msa1424640 MtrunA17_Chr5g0404311 28.889 180 115 6 279 448 537 713 1.49e-12 69.7
Msa1424640 MtrunA17_Chr8g0350681 27.530 247 168 7 211 451 238 479 1.83e-12 69.3
Msa1424640 MtrunA17_Chr8g0373031 27.778 180 121 3 278 450 536 713 5.03e-12 68.2
Msa1424640 MtrunA17_Chr1g0205751 26.756 299 199 10 169 452 105 398 6.57e-12 67.8
Msa1424640 MtrunA17_Chr1g0205751 27.778 216 150 3 169 382 200 411 1.52e-11 66.6
Msa1424640 MtrunA17_Chr7g0259851 26.697 221 154 4 175 392 189 404 1.16e-11 67.0
Msa1424640 MtrunA17_Chr3g0084371 30.818 159 109 1 186 343 271 429 2.89e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424640 AT4G16490.1 71.882 473 113 8 1 455 1 471 0.0 611
Msa1424640 AT3G01400.1 45.257 369 171 2 81 448 4 342 6.03e-93 285
Msa1424640 AT5G58680.1 43.902 369 175 5 82 448 3 341 1.12e-86 269
Msa1424640 AT2G23140.3 41.781 438 228 9 35 449 198 631 2.06e-85 275
Msa1424640 AT2G23140.5 41.781 438 228 9 35 449 198 631 2.06e-85 275
Msa1424640 AT2G23140.1 41.781 438 228 9 35 449 390 823 1.62e-83 274
Msa1424640 AT2G23140.2 41.781 438 228 9 35 449 387 820 1.80e-83 274
Msa1424640 AT2G23140.4 41.781 438 228 9 35 449 387 820 1.80e-83 274
Msa1424640 AT5G67340.1 49.828 291 144 2 160 449 412 701 1.47e-77 256
Msa1424640 AT5G67340.1 33.702 181 106 5 152 329 536 705 9.51e-11 64.7
Msa1424640 AT5G67340.2 49.828 291 144 2 160 449 412 701 1.47e-77 256
Msa1424640 AT5G67340.2 33.702 181 106 5 152 329 536 705 9.51e-11 64.7
Msa1424640 AT3G54790.2 48.929 280 140 3 170 448 438 715 9.61e-69 233
Msa1424640 AT3G54790.3 48.929 280 140 3 170 448 474 751 1.70e-68 233
Msa1424640 AT3G54790.1 48.929 280 140 3 170 448 474 751 1.70e-68 233
Msa1424640 AT3G46510.1 46.691 272 144 1 186 456 369 640 2.45e-66 225
Msa1424640 AT1G23030.1 44.286 280 155 1 171 449 333 612 6.56e-66 223
Msa1424640 AT1G71020.2 44.326 282 155 2 171 450 195 476 1.35e-64 216
Msa1424640 AT3G54850.1 45.196 281 154 0 175 455 351 631 1.40e-63 217
Msa1424640 AT1G71020.1 44.803 279 152 2 171 447 343 621 2.43e-63 216
Msa1424640 AT2G28830.1 43.382 272 151 3 186 454 300 571 5.14e-60 206
Msa1424640 AT5G42340.1 41.694 307 175 2 146 449 354 659 1.18e-56 199
Msa1424640 AT1G29340.1 35.759 316 181 9 152 454 389 695 4.04e-33 133
Msa1424640 AT3G07360.5 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa1424640 AT3G07360.3 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa1424640 AT3G07360.9 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa1424640 AT3G07360.6 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa1424640 AT3G07360.2 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa1424640 AT3G07360.8 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa1424640 AT3G07360.10 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa1424640 AT3G07360.7 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa1424640 AT3G07360.4 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa1424640 AT3G07360.1 34.296 277 170 8 180 447 180 453 5.02e-31 124
Msa1424640 AT1G67530.2 34.432 273 169 6 192 456 447 717 5.78e-31 127
Msa1424640 AT1G67530.1 34.432 273 169 6 192 456 447 717 5.78e-31 127
Msa1424640 AT1G67530.4 34.432 273 169 6 192 456 447 717 5.78e-31 127
Msa1424640 AT4G12710.1 35.424 271 166 6 189 450 65 335 6.98e-30 120
Msa1424640 AT5G62560.1 34.109 258 163 3 193 445 258 513 1.14e-27 116
Msa1424640 AT1G24330.1 32.971 276 172 8 183 449 438 709 1.31e-27 116
Msa1424640 AT1G24330.2 32.971 276 172 8 183 449 438 709 1.31e-27 116
Msa1424640 AT4G21350.1 34.701 268 169 4 179 444 104 367 1.61e-25 107
Msa1424640 AT3G03440.1 32.331 266 171 4 189 447 84 347 1.22e-24 105
Msa1424640 AT5G65200.1 28.322 286 192 3 172 446 227 510 5.12e-24 105
Msa1424640 AT5G40140.1 28.179 291 202 5 159 445 219 506 8.41e-23 101
Msa1424640 AT5G14510.1 34.440 241 144 8 216 446 44 280 1.40e-22 98.6
Msa1424640 AT1G27910.1 30.519 308 201 6 157 453 406 711 8.87e-22 99.0
Msa1424640 AT5G01830.1 30.931 333 172 11 130 445 353 644 3.74e-19 90.9
Msa1424640 AT3G47820.1 31.298 262 170 5 192 445 228 487 9.34e-19 89.4
Msa1424640 AT1G08315.1 26.962 293 193 8 170 442 8 299 5.77e-18 85.1
Msa1424640 AT4G31890.3 27.653 311 197 9 159 445 122 428 3.39e-17 84.3
Msa1424640 AT4G31890.2 27.653 311 197 9 159 445 122 428 3.39e-17 84.3
Msa1424640 AT4G31890.1 27.653 311 197 9 159 445 122 428 3.39e-17 84.3
Msa1424640 AT2G25130.1 28.996 269 173 8 191 445 131 395 3.69e-17 84.0
Msa1424640 AT5G18320.1 29.391 279 182 6 180 445 171 447 4.65e-17 83.6
Msa1424640 AT1G10560.1 29.391 279 183 9 189 455 408 684 3.65e-16 81.6
Msa1424640 AT1G60190.1 28.520 277 185 9 189 452 394 670 2.82e-15 79.0
Msa1424640 AT2G27430.1 28.990 307 193 9 157 448 63 359 7.37e-13 70.5

Find 156 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAACTTGTACTAATATTT+TGG 0.178951 tig0025778:+39044 Msa1424640:three_prime_UTR
CTTTGAGCCTTTGGTTGATT+AGG 0.218183 tig0025778:+38575 Msa1424640:three_prime_UTR
AGAGAAGTAATTGCGTATTT+TGG 0.241782 tig0025778:+38194 Msa1424640:exon
GGTACAGATGACCCTAGTTT+TGG 0.260031 tig0025778:+38613 Msa1424640:three_prime_UTR
TTCCAATTTGTTGTGTTTCC+AGG 0.266426 tig0025778:+38409 Msa1424640:three_prime_UTR
AAAATATTAGTACAAGTTTC+TGG 0.277209 tig0025778:-39042 None:intergenic
AAAAGCTCAATTGGAGCTTC+AGG 0.285745 tig0025778:+37030 Msa1424640:CDS
TACAGTGTGCCAAACATTCT+TGG 0.294440 tig0025778:+38284 Msa1424640:three_prime_UTR
ATGAAATGAAATGAAATTAA+AGG 0.299143 tig0025778:-35961 None:intergenic
TTGATTTATGTATTGAAAAC+AGG 0.316588 tig0025778:+36943 Msa1424640:CDS
TGTGTATATAGCAGCTTTGC+TGG 0.316861 tig0025778:+38257 Msa1424640:three_prime_UTR
CTGTAACGAATTTGAGATTA+GGG 0.318885 tig0025778:-36132 None:intergenic
CATGGTTGTCTTTGAGCCTT+TGG 0.326356 tig0025778:+38566 Msa1424640:three_prime_UTR
AATAGATGAATGATATTGAT+AGG 0.337033 tig0025778:-36230 None:intergenic
TGCATCTTTCTTCCCTCTGT+TGG 0.337791 tig0025778:-37091 None:intergenic
TAATGGAAAACGATTTGAAT+TGG 0.343954 tig0025778:-36200 None:intergenic
CGATACACAGGTGGATCTTT+CGG 0.345517 tig0025778:-36341 None:intergenic
CCTAGTACTTCACTGCTATC+TGG 0.346490 tig0025778:+38704 Msa1424640:three_prime_UTR
CTCCTGGAAACACAACAAAT+TGG 0.354614 tig0025778:-38411 None:intergenic
GAAGAGAATAAAAGCTCAAT+TGG 0.364861 tig0025778:+37021 Msa1424640:CDS
TTGGTTTCGCTTCTGTTGAA+TGG 0.365664 tig0025778:+37066 Msa1424640:CDS
AACATCCTTCCAAGAATGTT+TGG 0.368032 tig0025778:-38293 None:intergenic
GTTATCTTCATCGAAGATAC+TGG 0.372226 tig0025778:-36302 None:intergenic
ACTGTAACGAATTTGAGATT+AGG 0.373810 tig0025778:-36133 None:intergenic
GAATGTTTAGAAGTAAAATA+TGG 0.377983 tig0025778:+38981 Msa1424640:three_prime_UTR
AACAGATGAAGCTGAGTAAC+TGG 0.382820 tig0025778:-38818 None:intergenic
GGAGTTACATGGCGTGTGTT+TGG 0.383146 tig0025778:+38430 Msa1424640:three_prime_UTR
GAGTATCAGATATGGTATTC+TGG 0.386243 tig0025778:-38927 None:intergenic
AGCTAGTGACACGGTGGATT+CGG 0.390998 tig0025778:-38459 None:intergenic
CTTTGCTTGTTCCTTTGCTT+CGG 0.403894 tig0025778:+36815 Msa1424640:CDS
TCTGTGTCCATAGCTCCTTT+TGG 0.406665 tig0025778:+38733 Msa1424640:three_prime_UTR
AAGACAACCATGCTTGTGTT+TGG 0.417373 tig0025778:-38555 None:intergenic
GGTGAAGCCGTTGGTGGAGC+TGG 0.424429 tig0025778:+37179 Msa1424640:CDS
TTTCACAGACCCATCTTCAA+TGG 0.425894 tig0025778:-37322 None:intergenic
CTTGTCGCTCTTTCGCAGAA+TGG 0.428040 tig0025778:+37438 Msa1424640:CDS
TCTAGAGAAACCATTGTTGA+AGG 0.439249 tig0025778:-36166 None:intergenic
CTTGTGGAAGCCATTGAAGA+TGG 0.441589 tig0025778:+37312 Msa1424640:CDS
TTGTGTTTCCAGGAGTTACA+TGG 0.452715 tig0025778:+38419 Msa1424640:three_prime_UTR
CCAGATAGCAGTGAAGTACT+AGG 0.455977 tig0025778:-38704 None:intergenic
TATCTGATCTTTCAATAGCT+TGG 0.456089 tig0025778:-39210 None:intergenic
CTGGTGGCTGAGCAAGGGAA+TGG 0.460644 tig0025778:+37198 Msa1424640:CDS
TGCATGAATATAGCTAGGTT+TGG 0.466969 tig0025778:+38369 Msa1424640:three_prime_UTR
TTCAGGGGCGATTCCACCGT+TGG 0.467013 tig0025778:+37047 Msa1424640:CDS
ACCGCGTGCTCTTGTGTCCA+TGG 0.470277 tig0025778:-36847 None:intergenic
GTGGAGCTGGTGGCTGAGCA+AGG 0.473173 tig0025778:+37192 Msa1424640:CDS
TCGTGACAGAGTATCAGATA+TGG 0.474276 tig0025778:-38935 None:intergenic
CGAAGGGAAGGAAGCGATTG+TGG 0.476287 tig0025778:+37269 Msa1424640:CDS
TCACGAAATATCAGTGTGAA+TGG 0.481829 tig0025778:+38952 Msa1424640:three_prime_UTR
AACACACGCCATGTAACTCC+TGG 0.489743 tig0025778:-38427 None:intergenic
AAAGCTCAATTGGAGCTTCA+GGG 0.489989 tig0025778:+37031 Msa1424640:CDS
TCTGTAAATTCAGTCAAGTC+TGG 0.490131 tig0025778:+39167 Msa1424640:three_prime_UTR
AAGATCTAGAAGGTCTTGTT+CGG 0.492431 tig0025778:-36446 None:intergenic
GATTGCTTGTTAGAGAAGGT+GGG 0.496800 tig0025778:+37406 Msa1424640:CDS
AGCTATATTCATGCATCTAA+AGG 0.498385 tig0025778:-38361 None:intergenic
AAAGAGAGAGCGGTGAGTGC+TGG 0.499031 tig0025778:+37153 Msa1424640:CDS
AAGGAAGCGATTGTGGAAGA+AGG 0.502557 tig0025778:+37276 Msa1424640:CDS
AAGCTTGAGAAAGATCTAGA+AGG 0.504088 tig0025778:-36456 None:intergenic
CAAGCTCCAATTTAACCAAA+AGG 0.504254 tig0025778:-38748 None:intergenic
TTAGATGCATGAATATAGCT+AGG 0.505666 tig0025778:+38364 Msa1424640:three_prime_UTR
TATGTGTTCTTGACAAAAGC+AGG 0.509013 tig0025778:+39016 Msa1424640:three_prime_UTR
TCAAAATCACAGCGAAACAT+AGG 0.512047 tig0025778:+36256 Msa1424640:CDS
AATGAAATGAAATTAAAGGC+TGG 0.513835 tig0025778:-35957 None:intergenic
GTTGAACCTGAGCCTTGCAT+GGG 0.513964 tig0025778:+36592 Msa1424640:CDS
CTTCTTCAGTGGCTGTGAAA+CGG 0.515156 tig0025778:+36713 Msa1424640:CDS
ACTGGATCTTCTTGTTCGCA+TGG 0.518937 tig0025778:-36284 None:intergenic
GAAACCATTGTTGAAGGTGA+AGG 0.521147 tig0025778:-36160 None:intergenic
GGATTGCTTGTTAGAGAAGG+TGG 0.521997 tig0025778:+37405 Msa1424640:CDS
TGCTTCGGTGTAGTGATCCA+TGG 0.522512 tig0025778:+36830 Msa1424640:CDS
GTGGTGTTGAATAGCTTAGC+TGG 0.523643 tig0025778:+37240 Msa1424640:CDS
GCTTCCAAGAATCACAAATC+CGG 0.526706 tig0025778:+36409 Msa1424640:CDS
TGGTGGCTGAGCAAGGGAAT+GGG 0.526822 tig0025778:+37199 Msa1424640:CDS
CGCTAACCTCTGAAGCTCAC+CGG 0.536075 tig0025778:-36518 None:intergenic
AATTTAACCAAAAGGAGCTA+TGG 0.536811 tig0025778:-38740 None:intergenic
TCTGACAATTTCCAGTTGTG+TGG 0.537237 tig0025778:-39074 None:intergenic
CTCCGCACTTTCACAACAAG+TGG 0.537755 tig0025778:-38674 None:intergenic
CGAAAGATCCACCTGTGTAT+CGG 0.539755 tig0025778:+36342 Msa1424640:CDS
GGAACCTTCACCTTCAACAA+TGG 0.539901 tig0025778:+36156 Msa1424640:exon
GAAGCGATTGTGGAAGAAGG+TGG 0.540304 tig0025778:+37279 Msa1424640:CDS
TGGTTTACAGTCTTCTTCAG+TGG 0.541588 tig0025778:+36702 Msa1424640:CDS
AAGAAACTGATATTTAATGC+TGG 0.543549 tig0025778:+36907 Msa1424640:CDS
GAGTGTGACGGTGGAGGTGA+TGG 0.544477 tig0025778:+36556 Msa1424640:CDS
ATTGAAGATGGGTCTGTGAA+AGG 0.544960 tig0025778:+37324 Msa1424640:CDS
ACAGTGAAGCTTTGTGTGGA+TGG 0.547645 tig0025778:+36682 Msa1424640:CDS
TGAGCAAGGGAATGGGATGA+TGG 0.551467 tig0025778:+37206 Msa1424640:CDS
TCTATCGTCGACCTCCGTCT+CGG 0.551730 tig0025778:+36379 Msa1424640:CDS
GTTAGCGACGCTGCCGTCAC+CGG 0.552112 tig0025778:+36534 Msa1424640:CDS
TGTTGAACCTGAGCCTTGCA+TGG 0.552713 tig0025778:+36591 Msa1424640:CDS
TGTTGAATGGTTCCAACAGA+GGG 0.552820 tig0025778:+37079 Msa1424640:CDS
GACACAAGAGCACGCGGTGA+CGG 0.556104 tig0025778:+36852 Msa1424640:CDS
TCACCGGAGTGTGACGGTGG+AGG 0.558234 tig0025778:+36550 Msa1424640:CDS
TGGTGAACACTGAAATATCA+AGG 0.559336 tig0025778:-39190 None:intergenic
AACTCCTCGAGCTAAGCATA+AGG 0.564045 tig0025778:+37461 Msa1424640:CDS
AGGTGGAATCGCGGCGCTTG+TGG 0.566826 tig0025778:+37296 Msa1424640:CDS
TGGTGTGGTGAAGCCGTTGG+TGG 0.571210 tig0025778:+37173 Msa1424640:CDS
TGCTGGTGTGGTGAAGCCGT+TGG 0.572004 tig0025778:+37170 Msa1424640:CDS
ACGGAGGTCGACGATAGAAT+CGG 0.572944 tig0025778:-36374 None:intergenic
TTGTGGAAGCCATTGAAGAT+GGG 0.575508 tig0025778:+37313 Msa1424640:CDS
ATATCTCCGGTGAGCTTCAG+AGG 0.576091 tig0025778:+36512 Msa1424640:CDS
AGAGGATTGCTTGTTAGAGA+AGG 0.577133 tig0025778:+37402 Msa1424640:CDS
TGCGAAAGAGCGACAAGAGG+AGG 0.579038 tig0025778:-37432 None:intergenic
GCTTGTGTTTGGTCCTGCGT+CGG 0.580698 tig0025778:-38544 None:intergenic
AGCTGGAATTGACGAAGGGA+AGG 0.585870 tig0025778:+37257 Msa1424640:CDS
TGATTTATGTATTGAAAACA+GGG 0.586738 tig0025778:+36944 Msa1424640:CDS
ACAGTTATGCATACAATCAT+CGG 0.587339 tig0025778:-38792 None:intergenic
CCACCGTCACACTCCGGTGA+CGG 0.588930 tig0025778:-36547 None:intergenic
CGAAGCAAAGGAACAAGCAA+AGG 0.589643 tig0025778:-36814 None:intergenic
GATTATTGAGAGTATTTCGC+CGG 0.592143 tig0025778:+36645 Msa1424640:CDS
GGTCTGCTGCTGCAAAATTG+AGG 0.593795 tig0025778:+36734 Msa1424640:CDS
AGATGGGTCTGTGAAAGGAA+AGG 0.595034 tig0025778:+37329 Msa1424640:CDS
GCTTGTAGTAGTGATATCTC+CGG 0.597721 tig0025778:+36499 Msa1424640:CDS
AACACAACAAATTGGAACAA+GGG 0.602875 tig0025778:-38403 None:intergenic
TGGGATGATGGAGAAAGCAA+TGG 0.603285 tig0025778:+37218 Msa1424640:CDS
CACTTTCACAACAAGTGGGA+AGG 0.605662 tig0025778:-38669 None:intergenic
TCCCACTTGTTGTGAAAGTG+CGG 0.608019 tig0025778:+38672 Msa1424640:three_prime_UTR
CTGTTGAATGGTTCCAACAG+AGG 0.608645 tig0025778:+37078 Msa1424640:CDS
AGCTTAGCTGGAATTGACGA+AGG 0.609188 tig0025778:+37252 Msa1424640:CDS
GTGTGCCAAACATTCTTGGA+AGG 0.610231 tig0025778:+38288 Msa1424640:three_prime_UTR
CGCAGGACCAAACACAAGCA+TGG 0.612428 tig0025778:+38548 Msa1424640:three_prime_UTR
AAGCTCAATTGGAGCTTCAG+GGG 0.614032 tig0025778:+37032 Msa1424640:CDS
ACTGTCGGTTGAAGATCCTC+CGG 0.614433 tig0025778:-36664 None:intergenic
GCTGAAAGTGTTACAAACAG+AGG 0.615497 tig0025778:+37384 Msa1424640:CDS
ACAAAGAGAGAATTTCTCGA+CGG 0.618727 tig0025778:+36621 Msa1424640:CDS
CTGCCGTCACCGGAGTGTGA+CGG 0.618794 tig0025778:+36544 Msa1424640:CDS
TTTACCTTATGCTTAGCTCG+AGG 0.620491 tig0025778:-37465 None:intergenic
GAAGCCGTTGGTGGAGCTGG+TGG 0.620509 tig0025778:+37182 Msa1424640:CDS
TCATGCTTCAACTACATCCA+CGG 0.621756 tig0025778:+38511 Msa1424640:three_prime_UTR
GGATCACTACACCGAAGCAA+AGG 0.624246 tig0025778:-36826 None:intergenic
TCACCTCCACCGTCACACTC+CGG 0.625435 tig0025778:-36553 None:intergenic
TATTGAGAGTATTTCGCCGG+AGG 0.627403 tig0025778:+36648 Msa1424640:CDS
TGGAGCTGGTGGCTGAGCAA+GGG 0.629086 tig0025778:+37193 Msa1424640:CDS
TAATCTCAAATTCGTTACAG+TGG 0.630869 tig0025778:+36135 Msa1424640:five_prime_UTR
TGGAAGCGAGTTCTCCGAGA+CGG 0.633050 tig0025778:-36393 None:intergenic
CGGTGAATGCTTACCGACGC+AGG 0.638951 tig0025778:+38531 Msa1424640:three_prime_UTR
TTGAACCTGAGCCTTGCATG+GGG 0.643044 tig0025778:+36593 Msa1424640:CDS
TCCACACAAAGCTTCACTGT+CGG 0.643119 tig0025778:-36679 None:intergenic
AAACACAACAAATTGGAACA+AGG 0.643203 tig0025778:-38404 None:intergenic
ACCGACAGTGAAGCTTTGTG+TGG 0.646052 tig0025778:+36678 Msa1424640:CDS
TCAGCCACCAGCTCCACCAA+CGG 0.648002 tig0025778:-37186 None:intergenic
CCGTCACCGGAGTGTGACGG+TGG 0.648753 tig0025778:+36547 Msa1424640:CDS
TGTGGAAGAAGGTGGAATCG+CGG 0.656823 tig0025778:+37287 Msa1424640:CDS
GAGAGCGGTGAGTGCTGGTG+TGG 0.665360 tig0025778:+37158 Msa1424640:CDS
TTCTGCGAAAGAGCGACAAG+AGG 0.665494 tig0025778:-37435 None:intergenic
TGACGGTGGAGGTGATGGTG+TGG 0.666178 tig0025778:+36561 Msa1424640:CDS
GCTTAGCTGGAATTGACGAA+GGG 0.668649 tig0025778:+37253 Msa1424640:CDS
CACGCAGTGAGCTAGTGACA+CGG 0.672430 tig0025778:-38468 None:intergenic
TTCAACAGAAGCGAAACCAA+CGG 0.673733 tig0025778:-37063 None:intergenic
GATGATGGAGAAAGCAATGG+TGG 0.677671 tig0025778:+37221 Msa1424640:CDS
TCCGCACTTTCACAACAAGT+GGG 0.679803 tig0025778:-38673 None:intergenic
TAAGCAGAACAAAGAGAGAG+CGG 0.683784 tig0025778:+37143 Msa1424640:CDS
AAGCGAGTTCTCCGAGACGG+AGG 0.695212 tig0025778:-36390 None:intergenic
TCCATGGACACAAGAGCACG+CGG 0.715830 tig0025778:+36846 Msa1424640:CDS
AACAGAAGCGAAACCAACGG+TGG 0.719199 tig0025778:-37060 None:intergenic
AGAGACTTCTAAGCAGAACG+CGG 0.724526 tig0025778:+36969 Msa1424640:CDS
CGTGTCACTAGCTCACTGCG+TGG 0.734195 tig0025778:+38469 Msa1424640:three_prime_UTR
GCAGTGAGCTAGTGACACGG+TGG 0.777874 tig0025778:-38465 None:intergenic
GCGTCGGTAAGCATTCACCG+TGG 0.796363 tig0025778:-38528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAATCTTTATAATAAT+AGG - tig0025778:37864-37883 None:intergenic 10.0%
!! ATGAAATGAAATGAAATTAA+AGG - tig0025778:35964-35983 None:intergenic 15.0%
!! GTATAATATATATACACAAT+AGG - tig0025778:37700-37719 None:intergenic 15.0%
!!! ATTAGGTTTTTAAATTTCTT+TGG + tig0025778:38592-38611 Msa1424640:three_prime_UTR 15.0%
!! AATAGATGAATGATATTGAT+AGG - tig0025778:36233-36252 None:intergenic 20.0%
!! TTGATTTATGTATTGAAAAC+AGG + tig0025778:36943-36962 Msa1424640:CDS 20.0%
!! TGATTTATGTATTGAAAACA+GGG + tig0025778:36944-36963 Msa1424640:CDS 20.0%
!! CATTTCATGATTAGAATAAA+GGG - tig0025778:37610-37629 None:intergenic 20.0%
!! ACATTTCATGATTAGAATAA+AGG - tig0025778:37611-37630 None:intergenic 20.0%
!!! ATAAAGTATTCTAATTGATG+TGG + tig0025778:37906-37925 Msa1424640:intron 20.0%
!!! TAATCCTTGAATTTTTCTTT+AGG + tig0025778:37951-37970 Msa1424640:intron 20.0%
!! GAATGTTTAGAAGTAAAATA+TGG + tig0025778:38981-39000 Msa1424640:three_prime_UTR 20.0%
!! AAAATATTAGTACAAGTTTC+TGG - tig0025778:39045-39064 None:intergenic 20.0%
!!! AGAAACTTGTACTAATATTT+TGG + tig0025778:39044-39063 Msa1424640:three_prime_UTR 20.0%
! AATGAAATGAAATTAAAGGC+TGG - tig0025778:35960-35979 None:intergenic 25.0%
! TAATGGAAAACGATTTGAAT+TGG - tig0025778:36203-36222 None:intergenic 25.0%
!!! TATTGATAGGTTTTTGGTAA+TGG - tig0025778:36220-36239 None:intergenic 25.0%
!! GAATGATATTGATAGGTTTT+TGG - tig0025778:36226-36245 None:intergenic 25.0%
! AAGAAACTGATATTTAATGC+TGG + tig0025778:36907-36926 Msa1424640:CDS 25.0%
!! AATAAACCTTTTGAATCCTA+TGG - tig0025778:37517-37536 None:intergenic 25.0%
! TCAAGATATCTTAAATAACC+AGG - tig0025778:37573-37592 None:intergenic 25.0%
! ATATACATATGAGGAAAAAC+AGG - tig0025778:37645-37664 None:intergenic 25.0%
! TTTCAGCATATATACATATG+AGG - tig0025778:37654-37673 None:intergenic 25.0%
! AATGCCTAAAGAAAAATTCA+AGG - tig0025778:37958-37977 None:intergenic 25.0%
! AGAGAACTTAATGAATTAAC+AGG - tig0025778:38099-38118 None:intergenic 25.0%
!!! ATTTTGGTTATTAGTTAGGA+AGG + tig0025778:38210-38229 Msa1424640:three_prime_UTR 25.0%
! TTAAAAACCTAATCAACCAA+AGG - tig0025778:38585-38604 None:intergenic 25.0%
! CTGTAACGAATTTGAGATTA+GGG - tig0025778:36135-36154 None:intergenic 30.0%
! ACTGTAACGAATTTGAGATT+AGG - tig0025778:36136-36155 None:intergenic 30.0%
TAATCTCAAATTCGTTACAG+TGG + tig0025778:36135-36154 Msa1424640:five_prime_UTR 30.0%
GAAGAGAATAAAAGCTCAAT+TGG + tig0025778:37021-37040 Msa1424640:CDS 30.0%
TTCATACCATAGGATTCAAA+AGG + tig0025778:37508-37527 Msa1424640:intron 30.0%
! TTAGTAATTTTATGACCACC+TGG + tig0025778:37552-37571 Msa1424640:intron 30.0%
AGATATCTTAAATAACCAGG+TGG - tig0025778:37570-37589 None:intergenic 30.0%
ATATCTTGACTTTGAGTGTT+TGG + tig0025778:37584-37603 Msa1424640:intron 30.0%
TAATAAACCTCGACAAGAAA+AGG + tig0025778:37733-37752 Msa1424640:intron 30.0%
AATAAACCTCGACAAGAAAA+GGG + tig0025778:37734-37753 Msa1424640:intron 30.0%
! TTTTTGTGGAAGAATAGATC+TGG + tig0025778:38055-38074 Msa1424640:intron 30.0%
! AGAGAAGTAATTGCGTATTT+TGG + tig0025778:38194-38213 Msa1424640:exon 30.0%
!!! GCGTATTTTGGTTATTAGTT+AGG + tig0025778:38206-38225 Msa1424640:three_prime_UTR 30.0%
AGCTATATTCATGCATCTAA+AGG - tig0025778:38364-38383 None:intergenic 30.0%
TTAGATGCATGAATATAGCT+AGG + tig0025778:38364-38383 Msa1424640:three_prime_UTR 30.0%
AACACAACAAATTGGAACAA+GGG - tig0025778:38406-38425 None:intergenic 30.0%
AAACACAACAAATTGGAACA+AGG - tig0025778:38407-38426 None:intergenic 30.0%
AATTTAACCAAAAGGAGCTA+TGG - tig0025778:38743-38762 None:intergenic 30.0%
!! ATAGCTCCTTTTGGTTAAAT+TGG + tig0025778:38742-38761 Msa1424640:three_prime_UTR 30.0%
ACAGTTATGCATACAATCAT+CGG - tig0025778:38795-38814 None:intergenic 30.0%
! CAAACGTACACATATTTTCA+TGG + tig0025778:38904-38923 Msa1424640:three_prime_UTR 30.0%
TATCTGATCTTTCAATAGCT+TGG - tig0025778:39213-39232 None:intergenic 30.0%
ATAGTGAGAAAAAGTGAGTG+TGG - tig0025778:36070-36089 None:intergenic 35.0%
TCTAGAGAAACCATTGTTGA+AGG - tig0025778:36169-36188 None:intergenic 35.0%
TCAAAATCACAGCGAAACAT+AGG + tig0025778:36256-36275 Msa1424640:CDS 35.0%
GTTATCTTCATCGAAGATAC+TGG - tig0025778:36305-36324 None:intergenic 35.0%
! TTTTCCGGATTTGTGATTCT+TGG - tig0025778:36416-36435 None:intergenic 35.0%
!!! TTCGGAAGTTGATGATTTTC+CGG - tig0025778:36431-36450 None:intergenic 35.0%
!! AAGATCTAGAAGGTCTTGTT+CGG - tig0025778:36449-36468 None:intergenic 35.0%
AAGCTTGAGAAAGATCTAGA+AGG - tig0025778:36459-36478 None:intergenic 35.0%
ACAAAGAGAGAATTTCTCGA+CGG + tig0025778:36621-36640 Msa1424640:CDS 35.0%
!! GATTATTGAGAGTATTTCGC+CGG + tig0025778:36645-36664 Msa1424640:CDS 35.0%
!!! GCTGATAATCGTGTTTTGAT+TGG + tig0025778:36775-36794 Msa1424640:CDS 35.0%
! TGCATTTTGCTTCATACCAT+AGG + tig0025778:37498-37517 Msa1424640:intron 35.0%
TTAACTGTCAGTCAACATCT+GGG + tig0025778:37836-37855 Msa1424640:intron 35.0%
TTTCTCTCTATCATTGCTCT+TGG + tig0025778:38028-38047 Msa1424640:intron 35.0%
!!! TTGCTCTTGGCTATTTTTTG+TGG + tig0025778:38041-38060 Msa1424640:intron 35.0%
!!! AGTTCTCTGTTTTGTTTTGC+AGG + tig0025778:38111-38130 Msa1424640:intron 35.0%
AACATCCTTCCAAGAATGTT+TGG - tig0025778:38296-38315 None:intergenic 35.0%
TGCATGAATATAGCTAGGTT+TGG + tig0025778:38369-38388 Msa1424640:three_prime_UTR 35.0%
!! TTCCAATTTGTTGTGTTTCC+AGG + tig0025778:38409-38428 Msa1424640:three_prime_UTR 35.0%
! AAACCCTTTTCCCAAAACTA+GGG - tig0025778:38627-38646 None:intergenic 35.0%
CAAGCTCCAATTTAACCAAA+AGG - tig0025778:38751-38770 None:intergenic 35.0%
GAGTATCAGATATGGTATTC+TGG - tig0025778:38930-38949 None:intergenic 35.0%
TCACGAAATATCAGTGTGAA+TGG + tig0025778:38952-38971 Msa1424640:three_prime_UTR 35.0%
TATGTGTTCTTGACAAAAGC+AGG + tig0025778:39016-39035 Msa1424640:three_prime_UTR 35.0%
TCTGTAAATTCAGTCAAGTC+TGG + tig0025778:39167-39186 Msa1424640:three_prime_UTR 35.0%
TGGTGAACACTGAAATATCA+AGG - tig0025778:39193-39212 None:intergenic 35.0%
GAAACCATTGTTGAAGGTGA+AGG - tig0025778:36163-36182 None:intergenic 40.0%
GCTTCCAAGAATCACAAATC+CGG + tig0025778:36409-36428 Msa1424640:CDS 40.0%
GCTTGTAGTAGTGATATCTC+CGG + tig0025778:36499-36518 Msa1424640:CDS 40.0%
CTTTGTAAAAACCCCATGCA+AGG - tig0025778:36607-36626 None:intergenic 40.0%
TGGTTTACAGTCTTCTTCAG+TGG + tig0025778:36702-36721 Msa1424640:CDS 40.0%
!!! CGTGTTTTGATTGGTGAATC+AGG + tig0025778:36784-36803 Msa1424640:CDS 40.0%
CTTTGCTTGTTCCTTTGCTT+CGG + tig0025778:36815-36834 Msa1424640:CDS 40.0%
!!! TGCTCTTTTGAGTTTAGCGT+TGG + tig0025778:36996-37015 Msa1424640:CDS 40.0%
!!! TCTTTTGAGTTTAGCGTTGG+TGG + tig0025778:36999-37018 Msa1424640:CDS 40.0%
AAAAGCTCAATTGGAGCTTC+AGG + tig0025778:37030-37049 Msa1424640:CDS 40.0%
AAAGCTCAATTGGAGCTTCA+GGG + tig0025778:37031-37050 Msa1424640:CDS 40.0%
TTCAACAGAAGCGAAACCAA+CGG - tig0025778:37066-37085 None:intergenic 40.0%
TTGGTTTCGCTTCTGTTGAA+TGG + tig0025778:37066-37085 Msa1424640:CDS 40.0%
TGTTGAATGGTTCCAACAGA+GGG + tig0025778:37079-37098 Msa1424640:CDS 40.0%
TAAGCAGAACAAAGAGAGAG+CGG + tig0025778:37143-37162 Msa1424640:CDS 40.0%
TTGTGGAAGCCATTGAAGAT+GGG + tig0025778:37313-37332 Msa1424640:CDS 40.0%
TTTCACAGACCCATCTTCAA+TGG - tig0025778:37325-37344 None:intergenic 40.0%
ATTGAAGATGGGTCTGTGAA+AGG + tig0025778:37324-37343 Msa1424640:CDS 40.0%
!! GCTGAAAGTGTTACAAACAG+AGG + tig0025778:37384-37403 Msa1424640:CDS 40.0%
! AGAGGATTGCTTGTTAGAGA+AGG + tig0025778:37402-37421 Msa1424640:CDS 40.0%
! GATTGCTTGTTAGAGAAGGT+GGG + tig0025778:37406-37425 Msa1424640:CDS 40.0%
TTTACCTTATGCTTAGCTCG+AGG - tig0025778:37468-37487 None:intergenic 40.0%
CTTAACTGTCAGTCAACATC+TGG + tig0025778:37835-37854 Msa1424640:intron 40.0%
CTAATTGATGTGGCTGAATG+AGG + tig0025778:37916-37935 Msa1424640:intron 40.0%
TGTGTATATAGCAGCTTTGC+TGG + tig0025778:38257-38276 Msa1424640:three_prime_UTR 40.0%
TACAGTGTGCCAAACATTCT+TGG + tig0025778:38284-38303 Msa1424640:three_prime_UTR 40.0%
CTCCTGGAAACACAACAAAT+TGG - tig0025778:38414-38433 None:intergenic 40.0%
TTGTGTTTCCAGGAGTTACA+TGG + tig0025778:38419-38438 Msa1424640:three_prime_UTR 40.0%
TCATGCTTCAACTACATCCA+CGG + tig0025778:38511-38530 Msa1424640:three_prime_UTR 40.0%
AAGACAACCATGCTTGTGTT+TGG - tig0025778:38558-38577 None:intergenic 40.0%
CTTTGAGCCTTTGGTTGATT+AGG + tig0025778:38575-38594 Msa1424640:three_prime_UTR 40.0%
!! GTACAGATGACCCTAGTTTT+GGG + tig0025778:38614-38633 Msa1424640:three_prime_UTR 40.0%
!!! ATGACCCTAGTTTTGGGAAA+AGG + tig0025778:38620-38639 Msa1424640:three_prime_UTR 40.0%
!!! TGACCCTAGTTTTGGGAAAA+GGG + tig0025778:38621-38640 Msa1424640:three_prime_UTR 40.0%
! GAAACCCTTTTCCCAAAACT+AGG - tig0025778:38628-38647 None:intergenic 40.0%
AACAGATGAAGCTGAGTAAC+TGG - tig0025778:38821-38840 None:intergenic 40.0%
! TCGTGACAGAGTATCAGATA+TGG - tig0025778:38938-38957 None:intergenic 40.0%
! TTGGCATTTTTCCACACAAC+TGG + tig0025778:39063-39082 Msa1424640:three_prime_UTR 40.0%
TCTGACAATTTCCAGTTGTG+TGG - tig0025778:39077-39096 None:intergenic 40.0%
GGAACCTTCACCTTCAACAA+TGG + tig0025778:36156-36175 Msa1424640:exon 45.0%
ACTGGATCTTCTTGTTCGCA+TGG - tig0025778:36287-36306 None:intergenic 45.0%
CGATACACAGGTGGATCTTT+CGG - tig0025778:36344-36363 None:intergenic 45.0%
CGAAAGATCCACCTGTGTAT+CGG + tig0025778:36342-36361 Msa1424640:CDS 45.0%
! GAGATTTTCCGATACACAGG+TGG - tig0025778:36353-36372 None:intergenic 45.0%
! GGTGAGATTTTCCGATACAC+AGG - tig0025778:36356-36375 None:intergenic 45.0%
!! TATTGAGAGTATTTCGCCGG+AGG + tig0025778:36648-36667 Msa1424640:CDS 45.0%
TCCACACAAAGCTTCACTGT+CGG - tig0025778:36682-36701 None:intergenic 45.0%
! ACAGTGAAGCTTTGTGTGGA+TGG + tig0025778:36682-36701 Msa1424640:CDS 45.0%
CTTCTTCAGTGGCTGTGAAA+CGG + tig0025778:36713-36732 Msa1424640:CDS 45.0%
CGAAGCAAAGGAACAAGCAA+AGG - tig0025778:36817-36836 None:intergenic 45.0%
AGAGACTTCTAAGCAGAACG+CGG + tig0025778:36969-36988 Msa1424640:CDS 45.0%
AAGCTCAATTGGAGCTTCAG+GGG + tig0025778:37032-37051 Msa1424640:CDS 45.0%
CTGTTGAATGGTTCCAACAG+AGG + tig0025778:37078-37097 Msa1424640:CDS 45.0%
TGCATCTTTCTTCCCTCTGT+TGG - tig0025778:37094-37113 None:intergenic 45.0%
!! TGGGATGATGGAGAAAGCAA+TGG + tig0025778:37218-37237 Msa1424640:CDS 45.0%
!! GATGATGGAGAAAGCAATGG+TGG + tig0025778:37221-37240 Msa1424640:CDS 45.0%
! GTGGTGTTGAATAGCTTAGC+TGG + tig0025778:37240-37259 Msa1424640:CDS 45.0%
AGCTTAGCTGGAATTGACGA+AGG + tig0025778:37252-37271 Msa1424640:CDS 45.0%
GCTTAGCTGGAATTGACGAA+GGG + tig0025778:37253-37272 Msa1424640:CDS 45.0%
AAGGAAGCGATTGTGGAAGA+AGG + tig0025778:37276-37295 Msa1424640:CDS 45.0%
CTTGTGGAAGCCATTGAAGA+TGG + tig0025778:37312-37331 Msa1424640:CDS 45.0%
AGATGGGTCTGTGAAAGGAA+AGG + tig0025778:37329-37348 Msa1424640:CDS 45.0%
! GGATTGCTTGTTAGAGAAGG+TGG + tig0025778:37405-37424 Msa1424640:CDS 45.0%
AACTCCTCGAGCTAAGCATA+AGG + tig0025778:37461-37480 Msa1424640:CDS 45.0%
! AGAAGACCCTTTTCTTGTCG+AGG - tig0025778:37743-37762 None:intergenic 45.0%
GTGTGCCAAACATTCTTGGA+AGG + tig0025778:38288-38307 Msa1424640:three_prime_UTR 45.0%
CATGGTTGTCTTTGAGCCTT+TGG + tig0025778:38566-38585 Msa1424640:three_prime_UTR 45.0%
! GGTACAGATGACCCTAGTTT+TGG + tig0025778:38613-38632 Msa1424640:three_prime_UTR 45.0%
CACTTTCACAACAAGTGGGA+AGG - tig0025778:38672-38691 None:intergenic 45.0%
!! TCCCACTTGTTGTGAAAGTG+CGG + tig0025778:38672-38691 Msa1424640:three_prime_UTR 45.0%
TCCGCACTTTCACAACAAGT+GGG - tig0025778:38676-38695 None:intergenic 45.0%
! CCAGATAGCAGTGAAGTACT+AGG - tig0025778:38707-38726 None:intergenic 45.0%
CCTAGTACTTCACTGCTATC+TGG + tig0025778:38704-38723 Msa1424640:three_prime_UTR 45.0%
! TCTGTGTCCATAGCTCCTTT+TGG + tig0025778:38733-38752 Msa1424640:three_prime_UTR 45.0%
ACGGAGGTCGACGATAGAAT+CGG - tig0025778:36377-36396 None:intergenic 50.0%
ATATCTCCGGTGAGCTTCAG+AGG + tig0025778:36512-36531 Msa1424640:CDS 50.0%
TGTTGAACCTGAGCCTTGCA+TGG + tig0025778:36591-36610 Msa1424640:CDS 50.0%
GTTGAACCTGAGCCTTGCAT+GGG + tig0025778:36592-36611 Msa1424640:CDS 50.0%
TTGAACCTGAGCCTTGCATG+GGG + tig0025778:36593-36612 Msa1424640:CDS 50.0%
AAAAACCCCATGCAAGGCTC+AGG - tig0025778:36601-36620 None:intergenic 50.0%
! ACTGTCGGTTGAAGATCCTC+CGG - tig0025778:36667-36686 None:intergenic 50.0%
! ACCGACAGTGAAGCTTTGTG+TGG + tig0025778:36678-36697 Msa1424640:CDS 50.0%
GGTCTGCTGCTGCAAAATTG+AGG + tig0025778:36734-36753 Msa1424640:CDS 50.0%
GGATCACTACACCGAAGCAA+AGG - tig0025778:36829-36848 None:intergenic 50.0%
! TGCTTCGGTGTAGTGATCCA+TGG + tig0025778:36830-36849 Msa1424640:CDS 50.0%
AACAGAAGCGAAACCAACGG+TGG - tig0025778:37063-37082 None:intergenic 50.0%
TGAGCAAGGGAATGGGATGA+TGG + tig0025778:37206-37225 Msa1424640:CDS 50.0%
AGCTGGAATTGACGAAGGGA+AGG + tig0025778:37257-37276 Msa1424640:CDS 50.0%
GAAGCGATTGTGGAAGAAGG+TGG + tig0025778:37279-37298 Msa1424640:CDS 50.0%
TGTGGAAGAAGGTGGAATCG+CGG + tig0025778:37287-37306 Msa1424640:CDS 50.0%
TTCTGCGAAAGAGCGACAAG+AGG - tig0025778:37438-37457 None:intergenic 50.0%
CTTGTCGCTCTTTCGCAGAA+TGG + tig0025778:37438-37457 Msa1424640:CDS 50.0%
AACACACGCCATGTAACTCC+TGG - tig0025778:38430-38449 None:intergenic 50.0%
GGAGTTACATGGCGTGTGTT+TGG + tig0025778:38430-38449 Msa1424640:three_prime_UTR 50.0%
! AGCTAGTGACACGGTGGATT+CGG - tig0025778:38462-38481 None:intergenic 50.0%
CTCCGCACTTTCACAACAAG+TGG - tig0025778:38677-38696 None:intergenic 50.0%
TCTATCGTCGACCTCCGTCT+CGG + tig0025778:36379-36398 Msa1424640:CDS 55.0%
TGGAAGCGAGTTCTCCGAGA+CGG - tig0025778:36396-36415 None:intergenic 55.0%
!! CGCTAACCTCTGAAGCTCAC+CGG - tig0025778:36521-36540 None:intergenic 55.0%
! TCCATGGACACAAGAGCACG+CGG + tig0025778:36846-36865 Msa1424640:CDS 55.0%
AAAGAGAGAGCGGTGAGTGC+TGG + tig0025778:37153-37172 Msa1424640:CDS 55.0%
TGGTGGCTGAGCAAGGGAAT+GGG + tig0025778:37199-37218 Msa1424640:CDS 55.0%
CGAAGGGAAGGAAGCGATTG+TGG + tig0025778:37269-37288 Msa1424640:CDS 55.0%
TGCGAAAGAGCGACAAGAGG+AGG - tig0025778:37435-37454 None:intergenic 55.0%
CACGCAGTGAGCTAGTGACA+CGG - tig0025778:38471-38490 None:intergenic 55.0%
GCTTGTGTTTGGTCCTGCGT+CGG - tig0025778:38547-38566 None:intergenic 55.0%
CGCAGGACCAAACACAAGCA+TGG + tig0025778:38548-38567 Msa1424640:three_prime_UTR 55.0%
AAGCGAGTTCTCCGAGACGG+AGG - tig0025778:36393-36412 None:intergenic 60.0%
TCACCTCCACCGTCACACTC+CGG - tig0025778:36556-36575 None:intergenic 60.0%
GAGTGTGACGGTGGAGGTGA+TGG + tig0025778:36556-36575 Msa1424640:CDS 60.0%
! TGACGGTGGAGGTGATGGTG+TGG + tig0025778:36561-36580 Msa1424640:CDS 60.0%
ACCGCGTGCTCTTGTGTCCA+TGG - tig0025778:36850-36869 None:intergenic 60.0%
! GACACAAGAGCACGCGGTGA+CGG + tig0025778:36852-36871 Msa1424640:CDS 60.0%
TTCAGGGGCGATTCCACCGT+TGG + tig0025778:37047-37066 Msa1424640:CDS 60.0%
TGCTGGTGTGGTGAAGCCGT+TGG + tig0025778:37170-37189 Msa1424640:CDS 60.0%
TGGTGTGGTGAAGCCGTTGG+TGG + tig0025778:37173-37192 Msa1424640:CDS 60.0%
TCAGCCACCAGCTCCACCAA+CGG - tig0025778:37189-37208 None:intergenic 60.0%
TGGAGCTGGTGGCTGAGCAA+GGG + tig0025778:37193-37212 Msa1424640:CDS 60.0%
CTGGTGGCTGAGCAAGGGAA+TGG + tig0025778:37198-37217 Msa1424640:CDS 60.0%
GCAGTGAGCTAGTGACACGG+TGG - tig0025778:38468-38487 None:intergenic 60.0%
! CGTGTCACTAGCTCACTGCG+TGG + tig0025778:38469-38488 Msa1424640:three_prime_UTR 60.0%
! GCGTCGGTAAGCATTCACCG+TGG - tig0025778:38531-38550 None:intergenic 60.0%
CGGTGAATGCTTACCGACGC+AGG + tig0025778:38531-38550 Msa1424640:three_prime_UTR 60.0%
GTTAGCGACGCTGCCGTCAC+CGG + tig0025778:36534-36553 Msa1424640:CDS 65.0%
CTGCCGTCACCGGAGTGTGA+CGG + tig0025778:36544-36563 Msa1424640:CDS 65.0%
CCACCGTCACACTCCGGTGA+CGG - tig0025778:36550-36569 None:intergenic 65.0%
TCACCGGAGTGTGACGGTGG+AGG + tig0025778:36550-36569 Msa1424640:CDS 65.0%
!! GAGAGCGGTGAGTGCTGGTG+TGG + tig0025778:37158-37177 Msa1424640:CDS 65.0%
! GGTGAAGCCGTTGGTGGAGC+TGG + tig0025778:37179-37198 Msa1424640:CDS 65.0%
! GAAGCCGTTGGTGGAGCTGG+TGG + tig0025778:37182-37201 Msa1424640:CDS 65.0%
GTGGAGCTGGTGGCTGAGCA+AGG + tig0025778:37192-37211 Msa1424640:CDS 65.0%
AGGTGGAATCGCGGCGCTTG+TGG + tig0025778:37296-37315 Msa1424640:CDS 65.0%
CCGTCACCGGAGTGTGACGG+TGG + tig0025778:36547-36566 Msa1424640:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0025778 gene 35945 39249 35945 ID=Msa1424640;Name=Msa1424640
tig0025778 mRNA 35945 39249 35945 ID=Msa1424640-mRNA-1;Parent=Msa1424640;Name=Msa1424640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=230|1|1|1|1|1|2|1054|456
tig0025778 exon 35945 37482 35945 ID=Msa1424640-mRNA-1:exon:3883;Parent=Msa1424640-mRNA-1
tig0025778 exon 38133 39249 38133 ID=Msa1424640-mRNA-1:exon:3884;Parent=Msa1424640-mRNA-1
tig0025778 five_prime_UTR 35945 36174 35945 ID=Msa1424640-mRNA-1:five_prime_utr;Parent=Msa1424640-mRNA-1
tig0025778 CDS 36175 37482 36175 ID=Msa1424640-mRNA-1:cds;Parent=Msa1424640-mRNA-1
tig0025778 CDS 38133 38195 38133 ID=Msa1424640-mRNA-1:cds;Parent=Msa1424640-mRNA-1
tig0025778 three_prime_UTR 38196 39249 38196 ID=Msa1424640-mRNA-1:three_prime_utr;Parent=Msa1424640-mRNA-1
Gene Sequence

>Msa1424640

ATGGTTTCTCTAGAAGATTCTCGTTCCAATTCAAATCGTTTTCCATTACCAAAAACCTATCAATATCATTCATCTATTTCTTCAAAATCACAGCGAAACATAGGAAGATCCATGCGAACAAGAAGATCCAGTATCTTCGATGAAGATAACAGTAGCTGCACTTTCACCGAAAGATCCACCTGTGTATCGGAAAATCTCACCGATTCTATCGTCGACCTCCGTCTCGGAGAACTCGCTTCCAAGAATCACAAATCCGGAAAATCATCAACTTCCGAACAAGACCTTCTAGATCTTTCTCAAGCTTTTAGTGAATATGCTTATTCAGCTTGTAGTAGTGATATCTCCGGTGAGCTTCAGAGGTTAGCGACGCTGCCGTCACCGGAGTGTGACGGTGGAGGTGATGGTGTGGTTGAAGTTGTTGAACCTGAGCCTTGCATGGGGTTTTTACAAAGAGAGAATTTCTCGACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAACCGACAGTGAAGCTTTGTGTGGATGGTTTACAGTCTTCTTCAGTGGCTGTGAAACGGTCTGCTGCTGCAAAATTGAGGTTGCTTGCGAAGAATCGTGCTGATAATCGTGTTTTGATTGGTGAATCAGGTGCTGTACCTTTGCTTGTTCCTTTGCTTCGGTGTAGTGATCCATGGACACAAGAGCACGCGGTGACGGCGTTGTTGAATCTTTCTCTTCATGAAGATAACAAGAAACTGATATTTAATGCTGGAGCTGTGAAATCGTTGATTTATGTATTGAAAACAGGGACAGAGACTTCTAAGCAGAACGCGGCTTGTGCTCTTTTGAGTTTAGCGTTGGTGGAAGAGAATAAAAGCTCAATTGGAGCTTCAGGGGCGATTCCACCGTTGGTTTCGCTTCTGTTGAATGGTTCCAACAGAGGGAAGAAAGATGCATTAACGACGTTGTACAAGCTTTGTTCTGTTAAGCAGAACAAAGAGAGAGCGGTGAGTGCTGGTGTGGTGAAGCCGTTGGTGGAGCTGGTGGCTGAGCAAGGGAATGGGATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGCTGGAATTGACGAAGGGAAGGAAGCGATTGTGGAAGAAGGTGGAATCGCGGCGCTTGTGGAAGCCATTGAAGATGGGTCTGTGAAAGGAAAGGAATTTGCTGTTTTAACACTTTTGCAGCTTTGTGCTGAAAGTGTTACAAACAGAGGATTGCTTGTTAGAGAAGGTGGGATTCCTCCTCTTGTCGCTCTTTCGCAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACGCTTCTTCGATATTTGCGAGAATCAAGACAAGAAGCATCAACTTCAACTTCGTAG

Protein sequence

>Msa1424640

MVSLEDSRSNSNRFPLPKTYQYHSSISSKSQRNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSIVDLRLGELASKNHKSGKSSTSEQDLLDLSQAFSEYAYSACSSDISGELQRLATLPSPECDGGGDGVVEVVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCVDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPLLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIDEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS*