AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002194

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002194.t1 MTR_2g008710 95.077 325 16 0 1 325 1 325 0.0 616
MS.gene002194.t1 MTR_2g008730 87.385 325 17 1 1 325 1 301 0.0 548
MS.gene002194.t1 MTR_4g114210 60.127 316 123 2 11 325 7 320 7.23e-142 404
MS.gene002194.t1 MTR_2g008160 51.333 300 143 3 28 325 25 323 8.30e-99 294
MS.gene002194.t1 MTR_2g088770 47.500 320 160 6 10 325 10 325 1.50e-93 281
MS.gene002194.t1 MTR_4g125940 46.749 323 160 6 10 325 12 329 4.12e-90 272
MS.gene002194.t1 MTR_4g046713 45.872 327 165 6 4 325 7 326 6.89e-90 272
MS.gene002194.t1 MTR_1g025980 44.479 317 164 4 8 321 7 314 3.31e-89 270
MS.gene002194.t1 MTR_5g022870 44.025 318 164 4 11 325 10 316 3.99e-89 270
MS.gene002194.t1 MTR_1g086320 43.620 337 171 7 1 325 4 333 5.32e-88 267
MS.gene002194.t1 MTR_2g040000 47.195 303 148 5 31 325 33 331 1.66e-87 266
MS.gene002194.t1 MTR_2g029815 44.000 325 170 6 8 325 11 330 3.80e-87 266
MS.gene002194.t1 MTR_1g038680 47.557 307 148 7 28 325 30 332 5.14e-87 265
MS.gene002194.t1 MTR_7g086820 45.183 301 153 5 28 325 21 312 5.85e-87 264
MS.gene002194.t1 MTR_2g029750 48.185 303 144 5 31 325 33 330 1.08e-86 265
MS.gene002194.t1 MTR_1g086490 43.931 346 164 8 1 325 4 340 1.42e-86 264
MS.gene002194.t1 MTR_2g028980 45.000 320 164 6 13 325 16 330 1.55e-86 264
MS.gene002194.t1 MTR_8g075100 44.918 305 157 3 24 325 23 319 2.49e-86 262
MS.gene002194.t1 MTR_3g092990 44.970 338 161 8 1 325 1 326 2.61e-86 263
MS.gene002194.t1 MTR_2g029830 46.689 302 150 5 31 325 32 329 7.61e-86 262
MS.gene002194.t1 MTR_2g029800 44.371 302 157 5 31 325 33 330 1.80e-85 261
MS.gene002194.t1 MTR_7g107520 44.136 324 169 5 6 325 5 320 2.46e-85 260
MS.gene002194.t1 MTR_4g125940 50.362 276 126 5 57 325 3 274 1.00e-84 257
MS.gene002194.t1 MTR_5g017850 43.636 330 177 4 1 325 1 326 2.41e-84 258
MS.gene002194.t1 MTR_5g021060 47.508 301 148 5 31 325 34 330 2.58e-84 258
MS.gene002194.t1 MTR_1g101830 42.901 324 170 5 6 325 10 322 7.25e-84 256
MS.gene002194.t1 MTR_2g029740 46.026 302 152 5 31 325 33 330 9.66e-84 257
MS.gene002194.t1 MTR_2g029820 45.364 302 154 5 31 325 33 330 1.21e-83 257
MS.gene002194.t1 MTR_7g093370 44.207 328 169 7 6 325 50 371 1.87e-83 257
MS.gene002194.t1 MTR_5g017860 46.000 300 153 4 31 325 31 326 1.93e-83 255
MS.gene002194.t1 MTR_1g054205 45.545 303 153 6 31 325 28 326 1.35e-81 251
MS.gene002194.t1 MTR_0155s0040 40.923 325 172 5 8 325 4 315 5.41e-81 249
MS.gene002194.t1 MTR_2g008160 45.667 300 125 3 28 325 25 288 8.16e-81 247
MS.gene002194.t1 MTR_2g029730 44.371 302 157 5 31 325 29 326 1.63e-80 248
MS.gene002194.t1 MTR_2g084080 42.073 328 173 6 3 325 2 317 2.86e-80 247
MS.gene002194.t1 MTR_2g029860 45.033 302 155 5 31 325 33 330 4.51e-80 248
MS.gene002194.t1 MTR_7g086870 45.183 301 150 5 28 325 23 311 9.40e-80 245
MS.gene002194.t1 MTR_7g072480 42.424 330 171 8 1 325 1 316 1.59e-79 245
MS.gene002194.t1 MTR_4g133800 41.611 298 166 3 29 325 43 333 2.87e-79 245
MS.gene002194.t1 MTR_2g029560 44.040 302 158 5 31 325 28 325 2.90e-79 245
MS.gene002194.t1 MTR_8g076820 44.667 300 158 4 31 325 34 330 3.51e-79 244
MS.gene002194.t1 MTR_7g072510 43.210 324 162 7 8 325 5 312 6.40e-79 243
MS.gene002194.t1 MTR_2g084000 41.033 329 177 6 3 325 2 319 4.12e-78 241
MS.gene002194.t1 MTR_2g029850 43.046 302 161 5 31 325 33 330 2.58e-77 240
MS.gene002194.t1 MTR_3g094650 41.033 329 171 7 4 325 10 322 2.61e-77 239
MS.gene002194.t1 MTR_2g084110 41.667 324 172 6 7 325 6 317 1.05e-76 238
MS.gene002194.t1 MTR_4g122640 45.545 303 149 9 31 325 42 336 1.05e-76 238
MS.gene002194.t1 MTR_6g027440 41.925 322 175 6 7 325 2 314 1.07e-76 238
MS.gene002194.t1 MTR_2g084010 44.000 300 153 5 31 325 29 318 1.15e-76 238
MS.gene002194.t1 MTR_5g074970 41.742 333 168 8 4 325 9 326 4.41e-76 236
MS.gene002194.t1 MTR_1g115900 44.040 302 151 6 31 325 31 321 4.51e-76 236
MS.gene002194.t1 MTR_4g029170 41.590 327 172 8 6 325 7 321 4.65e-76 236
MS.gene002194.t1 MTR_1g077000 41.000 300 161 5 29 325 41 327 1.19e-75 235
MS.gene002194.t1 MTR_4g087965 41.935 341 172 8 4 322 7 343 7.41e-75 234
MS.gene002194.t1 MTR_2g084020 40.854 328 178 6 3 325 2 318 1.05e-74 233
MS.gene002194.t1 MTR_5g083860 42.715 302 155 6 31 325 35 325 1.30e-74 233
MS.gene002194.t1 MTR_4g083710 41.317 334 177 8 1 325 1 324 1.85e-74 232
MS.gene002194.t1 MTR_4g029200 43.333 300 154 5 31 325 50 338 2.90e-74 232
MS.gene002194.t1 MTR_7g029030 40.000 325 180 7 7 325 5 320 3.89e-74 231
MS.gene002194.t1 MTR_2g437770 41.667 300 158 4 31 325 54 341 7.97e-74 231
MS.gene002194.t1 MTR_3g072190 41.159 328 177 5 3 325 2 318 8.52e-74 230
MS.gene002194.t1 MTR_3g092990 42.604 338 158 9 1 325 1 315 1.59e-73 229
MS.gene002194.t1 MTR_2g078610 40.290 345 164 6 15 322 64 403 1.60e-73 233
MS.gene002194.t1 MTR_2g029910 42.574 303 162 6 31 325 34 332 1.95e-73 231
MS.gene002194.t1 MTR_4g029190 41.824 318 164 8 18 325 34 340 2.10e-73 230
MS.gene002194.t1 MTR_1g009750 40.785 331 184 6 3 325 2 328 4.44e-73 229
MS.gene002194.t1 MTR_2g067440 38.841 345 172 6 12 322 45 384 4.52e-73 231
MS.gene002194.t1 MTR_2g099175 39.706 340 182 7 3 325 2 335 8.48e-73 228
MS.gene002194.t1 MTR_2g084090 40.615 325 175 6 7 325 6 318 1.30e-72 227
MS.gene002194.t1 MTR_5g049280 40.653 337 179 12 5 325 6 337 3.90e-72 227
MS.gene002194.t1 MTR_1g090760 38.671 331 183 7 6 325 9 330 5.29e-72 226
MS.gene002194.t1 MTR_4g029180 41.722 302 158 6 31 325 31 321 7.35e-72 225
MS.gene002194.t1 MTR_2g077990 39.710 345 166 6 15 322 64 403 1.25e-71 228
MS.gene002194.t1 MTR_3g105790 41.486 323 180 4 7 325 5 322 1.39e-71 225
MS.gene002194.t1 MTR_1g022970 42.715 302 162 5 31 325 50 347 4.25e-71 224
MS.gene002194.t1 MTR_3g466200 39.640 333 180 7 1 325 1 320 7.77e-71 223
MS.gene002194.t1 MTR_7g026990 41.925 322 165 8 5 321 14 318 1.81e-70 222
MS.gene002194.t1 MTR_2g029830 46.743 261 128 5 72 325 5 261 2.76e-70 220
MS.gene002194.t1 MTR_4g074995 43.564 303 141 9 31 325 28 308 4.62e-70 220
MS.gene002194.t1 MTR_8g062780 42.484 306 157 7 31 325 27 324 6.48e-70 221
MS.gene002194.t1 MTR_3g094670 40.729 329 172 7 4 325 10 322 3.77e-69 218
MS.gene002194.t1 MTR_2g078280 40.000 325 153 6 24 311 73 392 1.33e-68 219
MS.gene002194.t1 MTR_4g095450 41.472 299 158 6 32 322 32 321 2.85e-68 216
MS.gene002194.t1 MTR_5g014100 41.967 305 164 6 31 325 30 331 5.83e-68 216
MS.gene002194.t1 MTR_6g043240 39.604 303 170 4 25 325 40 331 5.18e-67 214
MS.gene002194.t1 MTR_3g094630 39.818 329 175 7 4 325 10 322 8.19e-67 213
MS.gene002194.t1 MTR_5g074760 39.394 330 181 9 4 325 3 321 1.20e-66 212
MS.gene002194.t1 MTR_5g074740 42.244 303 157 8 31 325 29 321 2.22e-66 211
MS.gene002194.t1 MTR_3g466180 43.667 300 153 5 31 325 35 323 3.73e-66 211
MS.gene002194.t1 MTR_5g016010 36.086 327 196 6 4 322 5 326 3.75e-66 211
MS.gene002194.t1 MTR_4g127670 39.216 306 176 5 25 325 23 323 1.02e-65 210
MS.gene002194.t1 MTR_4g074990 39.692 325 159 10 9 325 10 305 3.81e-65 207
MS.gene002194.t1 MTR_5g074860 40.000 325 171 11 9 321 9 321 7.48e-65 207
MS.gene002194.t1 MTR_4g030890 39.274 303 172 6 28 325 101 396 1.51e-64 209
MS.gene002194.t1 MTR_5g074710 38.182 330 185 9 4 325 3 321 2.96e-64 206
MS.gene002194.t1 MTR_6g043460 39.216 306 170 5 25 325 34 328 3.68e-64 206
MS.gene002194.t1 MTR_6g043280 37.377 305 176 5 25 325 39 332 6.35e-64 205
MS.gene002194.t1 MTR_4g031140 38.614 303 174 6 28 325 29 324 4.09e-63 204
MS.gene002194.t1 MTR_3g467600 41.584 303 160 7 31 325 31 324 2.92e-62 201
MS.gene002194.t1 MTR_1g009750 38.298 329 178 7 3 325 2 311 9.39e-62 199
MS.gene002194.t1 MTR_0147s0010 38.339 313 158 7 31 322 81 379 5.04e-61 199
MS.gene002194.t1 MTR_2g067450 40.323 310 164 9 24 322 8 307 1.53e-60 196
MS.gene002194.t1 MTR_4g132110 36.050 319 188 5 14 325 19 328 1.50e-59 194
MS.gene002194.t1 MTR_4g074980 39.667 300 142 9 31 325 29 294 6.43e-59 191
MS.gene002194.t1 MTR_0286s0010 37.346 324 189 8 10 325 17 334 1.35e-58 192
MS.gene002194.t1 MTR_6g008075 37.346 324 189 8 10 325 17 334 1.35e-58 192
MS.gene002194.t1 MTR_3g072190 43.678 261 131 5 70 325 2 251 1.89e-58 189
MS.gene002194.t1 MTR_1g066710 34.098 305 185 6 28 325 28 323 1.19e-57 189
MS.gene002194.t1 MTR_4g132110 35.494 324 188 6 14 325 19 333 2.21e-57 189
MS.gene002194.t1 MTR_2g008160 51.064 188 81 2 28 214 25 202 5.82e-57 183
MS.gene002194.t1 MTR_4g074980 44.156 231 115 6 31 253 29 253 6.03e-57 185
MS.gene002194.t1 MTR_4g132490 36.013 311 185 6 22 325 24 327 2.05e-55 183
MS.gene002194.t1 MTR_5g033470 35.161 310 183 9 28 325 74 377 3.84e-55 184
MS.gene002194.t1 MTR_1g066640 33.770 305 186 6 28 325 28 323 8.53e-55 182
MS.gene002194.t1 MTR_1g066380 33.770 305 186 6 28 325 28 323 7.20e-53 177
MS.gene002194.t1 MTR_1g066680 33.115 305 187 6 28 325 28 322 5.17e-52 174
MS.gene002194.t1 MTR_3g105790 42.629 251 135 4 79 325 1 246 4.07e-51 170
MS.gene002194.t1 MTR_5g074860 33.846 325 152 12 9 321 9 282 4.75e-44 152
MS.gene002194.t1 MTR_1g066380 33.206 262 159 6 71 325 3 255 4.44e-41 144
MS.gene002194.t1 MTR_5g074700 41.880 234 108 9 96 325 5 214 2.41e-39 138
MS.gene002194.t1 MTR_6g048160 89.552 67 7 0 66 132 22 88 8.87e-37 127
MS.gene002194.t1 MTR_4g114220 60.870 92 28 2 47 136 23 108 9.25e-32 116
MS.gene002194.t1 MTR_2g077980 32.482 274 145 6 86 322 11 281 2.19e-31 119
MS.gene002194.t1 MTR_3g072260 48.837 129 59 3 10 131 6 134 8.78e-31 113
MS.gene002194.t1 MTR_2g078560 33.772 228 113 5 128 322 95 317 1.04e-30 118
MS.gene002194.t1 MTR_2g029880 37.113 194 105 4 135 325 9 188 6.08e-30 113
MS.gene002194.t1 MTR_7g072490 34.263 251 97 8 72 318 1 187 1.45e-29 112
MS.gene002194.t1 MTR_3g072210 38.191 199 101 6 134 325 55 238 6.20e-29 111
MS.gene002194.t1 MTR_7g086790 36.269 193 98 6 74 262 17 188 3.21e-27 105
MS.gene002194.t1 MTR_5g058120 35.928 167 92 3 157 323 6 157 9.78e-25 100
MS.gene002194.t1 MTR_7g086810 38.261 115 49 1 28 142 7 99 2.71e-21 91.3
MS.gene002194.t1 MTR_1g089005 37.879 132 71 2 17 137 3 134 1.75e-20 86.7
MS.gene002194.t1 MTR_3g462850 34.483 145 84 6 187 325 10 149 1.41e-14 70.5
MS.gene002194.t1 MTR_7g086785 39.286 84 48 1 70 150 1 84 1.73e-13 67.0
MS.gene002194.t1 MTR_1g098320 43.902 82 42 1 244 325 47 124 7.59e-13 65.5
MS.gene002194.t1 MTR_4g012865 47.170 53 28 0 28 80 78 130 3.54e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002194.t1 AT2G41480 61.442 319 119 2 8 325 13 328 5.79e-147 417
MS.gene002194.t1 AT5G39580 63.354 322 112 3 5 325 3 319 1.07e-145 413
MS.gene002194.t1 AT5G64120 62.162 333 107 5 5 325 3 328 4.21e-145 412
MS.gene002194.t1 AT5G64100 56.886 334 129 4 3 325 2 331 1.40e-126 365
MS.gene002194.t1 AT5G64110 56.329 316 136 2 10 325 17 330 5.92e-124 358
MS.gene002194.t1 AT4G25980 53.000 300 139 2 28 325 27 326 1.26e-111 327
MS.gene002194.t1 AT3G01190 48.276 319 154 6 9 325 12 321 9.39e-96 286
MS.gene002194.t1 AT1G77100 46.250 320 163 3 9 325 6 319 2.22e-95 285
MS.gene002194.t1 AT4G11290 46.296 324 163 6 8 325 8 326 9.86e-93 279
MS.gene002194.t1 AT1G05260 47.020 302 153 5 28 325 27 325 1.78e-90 273
MS.gene002194.t1 AT1G05240 45.333 300 159 4 29 325 28 325 3.03e-90 273
MS.gene002194.t1 AT1G05250 45.333 300 159 4 29 325 28 325 3.03e-90 273
MS.gene002194.t1 AT5G17820 45.231 325 165 5 1 325 2 313 6.06e-90 271
MS.gene002194.t1 AT5G17820 45.231 325 165 5 1 325 55 366 5.97e-89 271
MS.gene002194.t1 AT5G15180 44.410 322 170 5 9 325 12 329 6.04e-89 270
MS.gene002194.t1 AT5G39580 65.979 194 66 0 5 198 3 196 1.15e-87 263
MS.gene002194.t1 AT5G42180 43.450 313 167 3 12 321 8 313 1.24e-85 261
MS.gene002194.t1 AT5G19880 45.427 328 161 8 8 325 10 329 2.75e-85 260
MS.gene002194.t1 AT5G06720 43.902 328 171 6 5 325 12 333 1.70e-84 258
MS.gene002194.t1 AT4G08770 45.426 317 155 9 20 325 18 327 1.14e-83 256
MS.gene002194.t1 AT4G08780 44.479 317 158 8 20 325 18 327 5.35e-83 255
MS.gene002194.t1 AT4G36430 45.033 302 156 5 30 325 33 330 1.49e-82 253
MS.gene002194.t1 AT5G19890 44.667 300 155 4 31 325 34 327 3.98e-82 252
MS.gene002194.t1 AT3G50990 46.179 301 152 5 31 325 45 341 6.28e-82 252
MS.gene002194.t1 AT5G06730 43.385 325 171 6 10 325 14 334 2.00e-81 251
MS.gene002194.t1 AT4G33420 42.056 321 170 5 8 325 18 325 4.63e-81 249
MS.gene002194.t1 AT2G18150 44.040 302 159 5 30 325 39 336 5.04e-81 249
MS.gene002194.t1 AT4G26010 43.925 321 158 7 9 325 7 309 5.58e-81 248
MS.gene002194.t1 AT4G26010 43.925 321 158 7 9 325 35 337 9.75e-81 249
MS.gene002194.t1 AT4G33420 42.056 321 170 5 8 325 65 372 1.77e-80 249
MS.gene002194.t1 AT5G14130 46.667 300 150 5 31 325 36 330 6.46e-80 246
MS.gene002194.t1 AT2G38380 45.425 306 155 6 28 325 32 333 2.17e-79 246
MS.gene002194.t1 AT5G14130 46.667 300 150 5 31 325 77 371 2.27e-79 246
MS.gene002194.t1 AT5G22410 42.997 307 163 6 23 324 25 324 2.39e-79 245
MS.gene002194.t1 AT5G66390 44.186 301 158 5 31 325 37 333 2.55e-79 245
MS.gene002194.t1 AT2G18140 43.854 301 159 5 31 325 39 335 4.98e-79 244
MS.gene002194.t1 AT1G49570 45.016 311 155 7 23 321 40 346 5.86e-79 244
MS.gene002194.t1 AT5G51890 42.236 322 170 7 2 318 5 315 4.73e-78 241
MS.gene002194.t1 AT3G03670 42.368 321 174 4 9 325 8 321 5.70e-78 241
MS.gene002194.t1 AT1G44970 45.695 302 153 5 31 325 49 346 7.77e-78 241
MS.gene002194.t1 AT1G14550 41.641 329 172 8 6 325 4 321 9.27e-78 241
MS.gene002194.t1 AT2G38390 44.118 306 159 6 28 325 32 333 1.07e-77 241
MS.gene002194.t1 AT3G21770 42.525 301 166 5 28 324 30 327 1.12e-77 241
MS.gene002194.t1 AT5G05340 43.312 314 159 6 19 325 23 324 1.23e-77 240
MS.gene002194.t1 AT5G24070 42.809 299 159 5 33 325 43 335 5.02e-77 239
MS.gene002194.t1 AT4G31760 41.925 322 174 4 10 325 12 326 9.10e-77 238
MS.gene002194.t1 AT1G30870 44.224 303 153 4 29 325 53 345 6.01e-76 237
MS.gene002194.t1 AT3G49120 43.607 305 157 7 31 325 36 335 2.39e-75 235
MS.gene002194.t1 AT4G16270 45.033 302 154 6 30 325 53 348 4.04e-75 235
MS.gene002194.t1 AT3G32980 43.279 305 158 8 31 325 35 334 5.93e-74 232
MS.gene002194.t1 AT2G43480 42.617 298 159 5 34 325 44 335 1.67e-72 228
MS.gene002194.t1 AT1G14540 40.549 328 175 8 4 325 2 315 2.89e-72 226
MS.gene002194.t1 AT3G49110 42.295 305 161 7 31 325 37 336 1.03e-71 226
MS.gene002194.t1 AT1G71695 42.208 308 161 6 25 325 42 339 3.80e-71 225
MS.gene002194.t1 AT2G39040 43.689 309 158 7 28 325 47 350 1.40e-70 223
MS.gene002194.t1 AT4G33870 36.858 331 166 5 31 322 72 398 1.42e-70 225
MS.gene002194.t1 AT2G24800 44.333 300 157 5 31 325 35 329 1.71e-70 222
MS.gene002194.t1 AT4G37530 40.196 306 171 5 28 325 28 329 3.63e-70 221
MS.gene002194.t1 AT2G18980 39.450 327 185 6 4 325 5 323 3.74e-70 221
MS.gene002194.t1 AT2G35380 41.964 336 183 7 1 325 1 335 6.39e-69 218
MS.gene002194.t1 AT5G58400 40.361 332 179 7 2 325 5 325 1.31e-68 217
MS.gene002194.t1 AT1G68850 37.092 337 185 10 11 325 4 335 3.02e-68 217
MS.gene002194.t1 AT4G37520 38.889 306 175 5 28 325 28 329 2.45e-67 214
MS.gene002194.t1 AT1G34510 38.941 321 171 7 9 325 10 309 1.37e-66 211
MS.gene002194.t1 AT2G22420 36.562 320 191 6 11 325 7 319 3.15e-66 211
MS.gene002194.t1 AT5G67400 37.879 330 192 6 4 325 5 329 6.42e-66 211
MS.gene002194.t1 AT4G30170 38.614 303 176 5 28 325 28 325 6.87e-66 210
MS.gene002194.t1 AT3G28200 39.474 304 163 7 31 325 25 316 8.70e-66 210
MS.gene002194.t1 AT4G17690 40.397 302 164 6 31 325 30 322 2.01e-65 209
MS.gene002194.t1 AT3G49960 36.858 331 193 7 6 325 4 329 3.03e-65 209
MS.gene002194.t1 AT4G37520 38.235 306 174 6 28 325 28 326 6.94e-65 207
MS.gene002194.t1 AT5G40150 39.474 304 168 7 29 325 34 328 2.35e-64 206
MS.gene002194.t1 AT5G47000 37.690 329 188 7 6 325 10 330 2.52e-63 204
MS.gene002194.t1 AT2G34060 40.532 301 165 7 31 321 46 342 4.86e-63 204
MS.gene002194.t1 AT5G58390 36.778 329 187 7 5 325 1 316 8.48e-63 202
MS.gene002194.t1 AT4G25980 57.669 163 68 1 28 189 72 234 5.92e-62 199
MS.gene002194.t1 AT4G37530 40.711 253 142 4 28 272 28 280 3.20e-59 192
MS.gene002194.t1 AT1G24110 37.954 303 174 7 31 325 26 322 1.55e-56 186
MS.gene002194.t1 AT3G17070 35.650 331 193 8 3 321 13 335 1.87e-55 184
MS.gene002194.t1 AT4G21960 35.505 307 182 5 26 325 30 327 5.20e-55 182
MS.gene002194.t1 AT2G37130 33.443 305 186 7 29 325 1 296 1.20e-48 165
MS.gene002194.t1 AT2G37130 33.443 305 186 7 29 325 32 327 2.85e-48 165
MS.gene002194.t1 AT2G35380 41.532 248 135 5 85 325 3 247 2.09e-47 160
MS.gene002194.t1 AT2G24800 53.165 158 73 1 31 187 35 192 4.40e-46 157
MS.gene002194.t1 AT3G17070 35.985 264 149 8 69 321 18 272 9.48e-41 144
MS.gene002194.t1 AT3G42570 37.143 105 64 2 85 187 43 147 1.75e-13 67.4

Find 66 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACATTTAACGTAGAATT+TGG 0.149018 2.2:+71537718 MS.gene002194:CDS
AATGGAGGGTAGTTTGTTTA+AGG 0.178556 2.2:+71536449 None:intergenic
TGTTAACTCTGATTCTTCTT+TGG 0.220724 2.2:+71536599 MS.gene002194:CDS
CTTAGTTGGCAAGTTCCTAC+TGG 0.318941 2.2:+71537160 MS.gene002194:CDS
TCTGATTCTTCTTTGGCTCC+TGG 0.343590 2.2:+71536606 MS.gene002194:CDS
TGCTCGTGATTCCGTTGTTC+TGG 0.344793 2.2:+71536824 MS.gene002194:CDS
CTTTGGCTCCTGGTTTACTT+AGG 0.355089 2.2:+71536616 MS.gene002194:CDS
AAAATAGTGGTGCTACAAAC+AGG 0.361315 2.2:+71537536 MS.gene002194:CDS
GACGCTTCTGTTCTCGTTGC+CGG 0.364100 2.2:+71536672 MS.gene002194:CDS
GACATTTGTGCAAAGATACT+TGG 0.375629 2.2:+71537675 MS.gene002194:CDS
AACAGGGTTGCATTTGATAC+TGG 0.377242 2.2:+71537553 MS.gene002194:CDS
TCTGTTCTCGTTGCCGGCTC+AGG 0.395217 2.2:+71536678 MS.gene002194:CDS
AAACCACATATGCATTTAGT+TGG 0.397327 2.2:-71537818 None:intergenic
CAAAGATACTTGGGTATAAG+AGG 0.398661 2.2:+71537685 MS.gene002194:CDS
TTTGCAAACCTTGGTTTAAG+AGG 0.405321 2.2:+71536717 MS.gene002194:CDS
CGTAGAATTTGGAAAATCAA+TGG 0.430451 2.2:+71537729 MS.gene002194:CDS
TTGAGAAACTTCACTACAAA+TGG 0.433202 2.2:+71537454 MS.gene002194:CDS
CTGGTACTGATGGTGAAATC+AGG 0.433643 2.2:+71537779 MS.gene002194:CDS
AAACAAAAGTTTGCAGCAAA+AGG 0.445746 2.2:+71537259 MS.gene002194:CDS
TACTATGCTAATTTGAGAAA+CGG 0.447597 2.2:+71537601 MS.gene002194:CDS
ATTATAGGTGGACATACAAT+TGG 0.460057 2.2:+71537400 MS.gene002194:intron
TTGGGTATAAGAGGGTTGCT+TGG 0.466005 2.2:+71537694 MS.gene002194:CDS
AAGCTCGAGGCTGCATGTCC+CGG 0.480410 2.2:+71536768 MS.gene002194:CDS
ATTTAGATCTCTTACCAACT+AGG 0.485780 2.2:-71537306 None:intergenic
TGTAATTGTGAAAGAAATGA+AGG 0.486800 2.2:-71537499 None:intergenic
AACCTTGGACAAAACAATCA+TGG 0.497537 2.2:-71536647 None:intergenic
TGTAGAGTGGTGGTCTTAGT+TGG 0.498865 2.2:+71537146 MS.gene002194:intron
CAAGACCTTGTCACCCTAGT+TGG 0.504691 2.2:+71537292 MS.gene002194:CDS
CTTCAAAACCTCTTAAACCA+AGG 0.505092 2.2:-71536725 None:intergenic
ACACTTTGTCCTCAAAATAG+TGG 0.511975 2.2:+71537523 MS.gene002194:CDS
AAAACAGCATTTGCAAACCT+TGG 0.514744 2.2:+71536708 MS.gene002194:CDS
TTTAGATCTCTTACCAACTA+GGG 0.521835 2.2:-71537305 None:intergenic
AGAAATGAAGGGTCTATTGA+AGG 0.524815 2.2:-71537487 None:intergenic
CAGAGACGGACGCGTGTCAC+AGG 0.525113 2.2:+71537186 MS.gene002194:CDS
GAACAGAAGCGTCACAACCT+TGG 0.526096 2.2:-71536662 None:intergenic
AACGGAATCACGAGCAGCAA+GGG 0.540446 2.2:-71536817 None:intergenic
TTAGTTGGCAAGTTCCTACT+GGG 0.543556 2.2:+71537161 MS.gene002194:CDS
AGCAACATTGGAGTGAAGAC+TGG 0.545709 2.2:+71537760 MS.gene002194:CDS
AAGAAGAATCAGAGTTAACA+TGG 0.553242 2.2:-71536596 None:intergenic
GTTCCTACTGGGCGCAGAGA+CGG 0.561016 2.2:+71537172 MS.gene002194:CDS
CGTCCGTCTCTGCGCCCAGT+AGG 0.568492 2.2:-71537175 None:intergenic
GCTAATTTGAGAAACGGACG+TGG 0.577742 2.2:+71537607 MS.gene002194:CDS
ATCAACAGAATCACTAGGCG+CGG 0.581056 2.2:-71537230 None:intergenic
ACATTTGTGCAAAGATACTT+GGG 0.583884 2.2:+71537676 MS.gene002194:CDS
AATACATTAGTGCATGGACA+AGG 0.588441 2.2:+71536504 MS.gene002194:CDS
TTCAATCTGATCAAGCATTG+TGG 0.589362 2.2:+71537635 MS.gene002194:CDS
CAACGGAATCACGAGCAGCA+AGG 0.592899 2.2:-71536818 None:intergenic
TGTAACTGTGGACTTAACAA+TGG 0.607392 2.2:-71536571 None:intergenic
GTAATTGTGAAAGAAATGAA+GGG 0.614696 2.2:-71537498 None:intergenic
AAGTGCATCCTAAGTAAACC+AGG 0.621031 2.2:-71536624 None:intergenic
CATGGACAAGGGACACGTGT+AGG 0.625095 2.2:+71536516 MS.gene002194:CDS
ATCAGCACAAGAAACAACAC+CGG 0.631870 2.2:-71536787 None:intergenic
AAATAGTGGTGCTACAAACA+GGG 0.634740 2.2:+71537537 MS.gene002194:CDS
TCAACAGAATCACTAGGCGC+GGG 0.638917 2.2:-71537229 None:intergenic
AAAGATACTTGGGTATAAGA+GGG 0.648121 2.2:+71537686 MS.gene002194:CDS
TCAGCACAAGAAACAACACC+GGG 0.649313 2.2:-71536786 None:intergenic
TCTTACCAACTAGGGTGACA+AGG 0.661482 2.2:-71537297 None:intergenic
ATTGTGAATACATTAGTGCA+TGG 0.665947 2.2:+71536498 MS.gene002194:CDS
GTTAACATGGGATGTAACTG+TGG 0.675622 2.2:-71536583 None:intergenic
TTAGATAATTACCAGAACAA+CGG 0.678980 2.2:-71536835 None:intergenic
AGAAGAATCAGAGTTAACAT+GGG 0.684342 2.2:-71536595 None:intergenic
TGCACATCAACAGAATCACT+AGG 0.689909 2.2:-71537235 None:intergenic
GGAGTGAAGACTGGTACTGA+TGG 0.699391 2.2:+71537769 MS.gene002194:CDS
TGATGCTAAGACAAAGCTCG+AGG 0.701217 2.2:+71536755 MS.gene002194:CDS
ATGTATGCAATGTAGAGTGG+TGG 0.712684 2.2:+71537136 MS.gene002194:intron
ATACATTAGTGCATGGACAA+GGG 0.712858 2.2:+71536505 MS.gene002194:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTCTATGAATATATTAT+AGG + chr2.2:71537385-71537404 MS.gene002194:intron 10.0%
!!! ATATTGATCTTTAATTTTGA+TGG - chr2.2:71536973-71536992 None:intergenic 15.0%
!! ATTGCATACATAAATCAATT+AGG - chr2.2:71537127-71537146 None:intergenic 20.0%
!! TTAACATTTAACGTAGAATT+TGG + chr2.2:71537718-71537737 MS.gene002194:CDS 20.0%
!! TTCTATGAATATATTATAGG+TGG + chr2.2:71537388-71537407 MS.gene002194:intron 20.0%
!!! AAGTTCAAAATTTGTTGAAA+TGG + chr2.2:71537100-71537119 MS.gene002194:intron 20.0%
! GTAATTGTGAAAGAAATGAA+GGG - chr2.2:71537501-71537520 None:intergenic 25.0%
! TACTATGCTAATTTGAGAAA+CGG + chr2.2:71537601-71537620 MS.gene002194:CDS 25.0%
! TGTAATTGTGAAAGAAATGA+AGG - chr2.2:71537502-71537521 None:intergenic 25.0%
! TTAGATAATTACCAGAACAA+CGG - chr2.2:71536838-71536857 None:intergenic 25.0%
!! TTCAATATGTAATTCTAGAG+TGG - chr2.2:71537350-71537369 None:intergenic 25.0%
!!! GTGTTTCTTTTACTTGTTTT+TGG + chr2.2:71536474-71536493 MS.gene002194:CDS 25.0%
AAACAAAAGTTTGCAGCAAA+AGG + chr2.2:71537259-71537278 MS.gene002194:CDS 30.0%
AAAGATACTTGGGTATAAGA+GGG + chr2.2:71537686-71537705 MS.gene002194:CDS 30.0%
AAGAAGAATCAGAGTTAACA+TGG - chr2.2:71536599-71536618 None:intergenic 30.0%
ACATTTGTGCAAAGATACTT+GGG + chr2.2:71537676-71537695 MS.gene002194:CDS 30.0%
AGAAGAATCAGAGTTAACAT+GGG - chr2.2:71536598-71536617 None:intergenic 30.0%
ATGGTAAAAATGAGCAACAT+TGG + chr2.2:71537748-71537767 MS.gene002194:CDS 30.0%
ATTATAGGTGGACATACAAT+TGG + chr2.2:71537400-71537419 MS.gene002194:intron 30.0%
ATTGTGAATACATTAGTGCA+TGG + chr2.2:71536498-71536517 MS.gene002194:CDS 30.0%
ATTTAGATCTCTTACCAACT+AGG - chr2.2:71537309-71537328 None:intergenic 30.0%
CGTAGAATTTGGAAAATCAA+TGG + chr2.2:71537729-71537748 MS.gene002194:CDS 30.0%
TGTTAACTCTGATTCTTCTT+TGG + chr2.2:71536599-71536618 MS.gene002194:CDS 30.0%
TTGAGAAACTTCACTACAAA+TGG + chr2.2:71537454-71537473 MS.gene002194:CDS 30.0%
TTTAGATCTCTTACCAACTA+GGG - chr2.2:71537308-71537327 None:intergenic 30.0%
TTTATGTATGCAATGTAGAG+TGG + chr2.2:71537133-71537152 MS.gene002194:intron 30.0%
AAAACAGCATTTGCAAACCT+TGG + chr2.2:71536708-71536727 MS.gene002194:CDS 35.0%
AACCTTGGACAAAACAATCA+TGG - chr2.2:71536650-71536669 None:intergenic 35.0%
AATACATTAGTGCATGGACA+AGG + chr2.2:71536504-71536523 MS.gene002194:CDS 35.0%
ACACTTTGTCCTCAAAATAG+TGG + chr2.2:71537523-71537542 MS.gene002194:CDS 35.0%
AGAAATGAAGGGTCTATTGA+AGG - chr2.2:71537490-71537509 None:intergenic 35.0%
ATACATTAGTGCATGGACAA+GGG + chr2.2:71536505-71536524 MS.gene002194:CDS 35.0%
CAAAGATACTTGGGTATAAG+AGG + chr2.2:71537685-71537704 MS.gene002194:CDS 35.0%
CTTCAAAACCTCTTAAACCA+AGG - chr2.2:71536728-71536747 None:intergenic 35.0%
GACATTTGTGCAAAGATACT+TGG + chr2.2:71537675-71537694 MS.gene002194:CDS 35.0%
TGTAACTGTGGACTTAACAA+TGG - chr2.2:71536574-71536593 None:intergenic 35.0%
TTTGCAAACCTTGGTTTAAG+AGG + chr2.2:71536717-71536736 MS.gene002194:CDS 35.0%
! TTCAATCTGATCAAGCATTG+TGG + chr2.2:71537635-71537654 MS.gene002194:CDS 35.0%
! TTTGTAGCACCACTATTTTG+AGG - chr2.2:71537535-71537554 None:intergenic 35.0%
!! AAAATAGTGGTGCTACAAAC+AGG + chr2.2:71537536-71537555 MS.gene002194:CDS 35.0%
!! AAATAGTGGTGCTACAAACA+GGG + chr2.2:71537537-71537556 MS.gene002194:CDS 35.0%
!! TTCCATGATTGTTTTGTCCA+AGG + chr2.2:71536645-71536664 MS.gene002194:CDS 35.0%
!!! GTTTGCAAATGCTGTTTTCT+CGG - chr2.2:71536706-71536725 None:intergenic 35.0%
AACAGGGTTGCATTTGATAC+TGG + chr2.2:71537553-71537572 MS.gene002194:CDS 40.0%
AAGTGCATCCTAAGTAAACC+AGG - chr2.2:71536627-71536646 None:intergenic 40.0%
ATCAGCACAAGAAACAACAC+CGG - chr2.2:71536790-71536809 None:intergenic 40.0%
ATGTATGCAATGTAGAGTGG+TGG + chr2.2:71537136-71537155 MS.gene002194:intron 40.0%
GTTAACATGGGATGTAACTG+TGG - chr2.2:71536586-71536605 None:intergenic 40.0%
TGCACATCAACAGAATCACT+AGG - chr2.2:71537238-71537257 None:intergenic 40.0%
TTAGTTGGCAAGTTCCTACT+GGG + chr2.2:71537161-71537180 MS.gene002194:CDS 40.0%
AGCAACATTGGAGTGAAGAC+TGG + chr2.2:71537760-71537779 MS.gene002194:CDS 45.0%
ATCAACAGAATCACTAGGCG+CGG - chr2.2:71537233-71537252 None:intergenic 45.0%
CTTAGTTGGCAAGTTCCTAC+TGG + chr2.2:71537160-71537179 MS.gene002194:CDS 45.0%
GCTAATTTGAGAAACGGACG+TGG + chr2.2:71537607-71537626 MS.gene002194:CDS 45.0%
TCAGCACAAGAAACAACACC+GGG - chr2.2:71536789-71536808 None:intergenic 45.0%
TCTTACCAACTAGGGTGACA+AGG - chr2.2:71537300-71537319 None:intergenic 45.0%
TGATGCTAAGACAAAGCTCG+AGG + chr2.2:71536755-71536774 MS.gene002194:CDS 45.0%
TTGGGTATAAGAGGGTTGCT+TGG + chr2.2:71537694-71537713 MS.gene002194:CDS 45.0%
! CTTTGGCTCCTGGTTTACTT+AGG + chr2.2:71536616-71536635 MS.gene002194:CDS 45.0%
! TCTGATTCTTCTTTGGCTCC+TGG + chr2.2:71536606-71536625 MS.gene002194:CDS 45.0%
! TGTAGAGTGGTGGTCTTAGT+TGG + chr2.2:71537146-71537165 MS.gene002194:intron 45.0%
!! CTGGTACTGATGGTGAAATC+AGG + chr2.2:71537779-71537798 MS.gene002194:CDS 45.0%
AACGGAATCACGAGCAGCAA+GGG - chr2.2:71536820-71536839 None:intergenic 50.0%
CAAGACCTTGTCACCCTAGT+TGG + chr2.2:71537292-71537311 MS.gene002194:CDS 50.0%
TCAACAGAATCACTAGGCGC+GGG - chr2.2:71537232-71537251 None:intergenic 50.0%
TGCTCGTGATTCCGTTGTTC+TGG + chr2.2:71536824-71536843 MS.gene002194:CDS 50.0%
! GGAGTGAAGACTGGTACTGA+TGG + chr2.2:71537769-71537788 MS.gene002194:CDS 50.0%
!! GAACAGAAGCGTCACAACCT+TGG - chr2.2:71536665-71536684 None:intergenic 50.0%
CAACGGAATCACGAGCAGCA+AGG - chr2.2:71536821-71536840 None:intergenic 55.0%
CATGGACAAGGGACACGTGT+AGG + chr2.2:71536516-71536535 MS.gene002194:CDS 55.0%
GACGCTTCTGTTCTCGTTGC+CGG + chr2.2:71536672-71536691 MS.gene002194:CDS 55.0%
!!! TGTTTTCTCGGTGCCTGAGC+CGG - chr2.2:71536694-71536713 None:intergenic 55.0%
AAGCTCGAGGCTGCATGTCC+CGG + chr2.2:71536768-71536787 MS.gene002194:CDS 60.0%
GTTCCTACTGGGCGCAGAGA+CGG + chr2.2:71537172-71537191 MS.gene002194:CDS 60.0%
!! TCTGTTCTCGTTGCCGGCTC+AGG + chr2.2:71536678-71536697 MS.gene002194:CDS 60.0%
CAGAGACGGACGCGTGTCAC+AGG + chr2.2:71537186-71537205 MS.gene002194:CDS 65.0%
CGTCCGTCTCTGCGCCCAGT+AGG - chr2.2:71537178-71537197 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 71536450 71537825 71536450 ID=MS.gene002194
chr2.2 mRNA 71536450 71537825 71536450 ID=MS.gene002194.t1;Parent=MS.gene002194
chr2.2 exon 71536450 71536845 71536450 ID=MS.gene002194.t1.exon1;Parent=MS.gene002194.t1
chr2.2 CDS 71536450 71536845 71536450 ID=cds.MS.gene002194.t1;Parent=MS.gene002194.t1
chr2.2 exon 71537151 71537313 71537151 ID=MS.gene002194.t1.exon2;Parent=MS.gene002194.t1
chr2.2 CDS 71537151 71537313 71537151 ID=cds.MS.gene002194.t1;Parent=MS.gene002194.t1
chr2.2 exon 71537407 71537825 71537407 ID=MS.gene002194.t1.exon3;Parent=MS.gene002194.t1
chr2.2 CDS 71537407 71537825 71537407 ID=cds.MS.gene002194.t1;Parent=MS.gene002194.t1
Gene Sequence

>MS.gene002194

ATGGAGGGTAGTTTGTTTAAGGTTGTGTTTCTTTTACTTGTTTTTGGTATTGTGAATACATTAGTGCATGGACAAGGGACACGTGTAGGATTCTATTCAAGTACATGTTCTCAAGCAGAATCCATTGTTAAGTCCACAGTTACATCCCATGTTAACTCTGATTCTTCTTTGGCTCCTGGTTTACTTAGGATGCACTTCCATGATTGTTTTGTCCAAGGTTGTGACGCTTCTGTTCTCGTTGCCGGCTCAGGCACCGAGAAAACAGCATTTGCAAACCTTGGTTTAAGAGGTTTTGAAGTAATTGATGATGCTAAGACAAAGCTCGAGGCTGCATGTCCCGGTGTTGTTTCTTGTGCTGATATTCTTGCCCTTGCTGCTCGTGATTCCGTTGTTCTGGTAATTATCTAACTTAACTATATATTGTACAAATCATAGTAAAGAAGATACTGCTAGAAAATGTTGAATTAGTTACACAAATATAAATTTTATGTTCATGAATTTAGTCAAATATCTATTAGAACCATCAAAATTAAAGATCAATATTCATTTTTTTTTATATTAATAATTTAGTCATCTAACTTAACTATATAATAGTACAGAAAATTCGATCAATAAAATTGACATAAGTTGAATATATTACTTAGTGTAAGAAGTTCAAAATTTGTTGAAATGGACCTAATTGATTTATGTATGCAATGTAGAGTGGTGGTCTTAGTTGGCAAGTTCCTACTGGGCGCAGAGACGGACGCGTGTCACAGGCTTCTGATGTCAATAACTTGCCCGCGCCTAGTGATTCTGTTGATGTGCAGAAACAAAAGTTTGCAGCAAAAGGTCTTAACACTCAAGACCTTGTCACCCTAGTTGGTAAGAGATCTAAATATTTTCAAAATTTATGTACCACTCTAGAATTACATATTGAAGTTGCATTCACATTAATATTCTATGAATATATTATAGGTGGACATACAATTGGTACAACAGCATGTCAATTCTTCAGCAACAGATTGAGAAACTTCACTACAAATGGTGCAGCTGATCCTTCAATAGACCCTTCATTTCTTTCACAATTACAAACACTTTGTCCTCAAAATAGTGGTGCTACAAACAGGGTTGCATTTGATACTGGAAGTCAAAACAAATTTGATAATTCTTACTATGCTAATTTGAGAAACGGACGTGGAGTTCTTCAATCTGATCAAGCATTGTGGAATGATGCTTCGACAAAGACATTTGTGCAAAGATACTTGGGTATAAGAGGGTTGCTTGGATTAACATTTAACGTAGAATTTGGAAAATCAATGGTAAAAATGAGCAACATTGGAGTGAAGACTGGTACTGATGGTGAAATCAGGAAGATATGTTCTGCTTCCAACTAA
Protein sequence

>MS.gene002194.t1

MEGSLFKVVFLLLVFGIVNTLVHGQGTRVGFYSSTCSQAESIVKSTVTSHVNSDSSLAPGLLRMHFHDCFVQGCDASVLVAGSGTEKTAFANLGLRGFEVIDDAKTKLEAACPGVVSCADILALAARDSVVLSGGLSWQVPTGRRDGRVSQASDVNNLPAPSDSVDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFSNRLRNFTTNGAADPSIDPSFLSQLQTLCPQNSGATNRVAFDTGSQNKFDNSYYANLRNGRGVLQSDQALWNDASTKTFVQRYLGIRGLLGLTFNVEFGKSMVKMSNIGVKTGTDGEIRKICSASN