Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00315.t1 | XP_013463257.1 | 98.2 | 221 | 2 | 1 | 1 | 219 | 1 | 221 | 9.80E-114 | 419.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00315.t1 | O23429 | 86.9 | 222 | 26 | 2 | 1 | 219 | 1 | 222 | 1.9e-105 | 383.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00315.t1 | B7FI15 | 98.2 | 221 | 2 | 1 | 1 | 219 | 1 | 221 | 7.1e-114 | 419.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47655 | MS.gene00315 | PPI |
| MS.gene66057 | MS.gene00315 | PPI |
| MS.gene00315 | MS.gene029336 | PPI |
| MS.gene00315 | MS.gene70862 | PPI |
| MS.gene66728 | MS.gene00315 | PPI |
| MS.gene00315 | MS.gene016966 | PPI |
| MS.gene00315 | MS.gene78212 | PPI |
| MS.gene77217 | MS.gene00315 | PPI |
| MS.gene88213 | MS.gene00315 | PPI |
| MS.gene65117 | MS.gene00315 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00315.t1 | MTR_2g436870 | 98.190 | 221 | 2 | 1 | 1 | 219 | 1 | 221 | 8.64e-163 | 448 |
| MS.gene00315.t1 | MTR_1g047720 | 67.123 | 219 | 70 | 1 | 1 | 217 | 1 | 219 | 9.61e-114 | 324 |
| MS.gene00315.t1 | MTR_4g022570 | 70.776 | 219 | 62 | 1 | 1 | 217 | 1 | 219 | 6.61e-110 | 314 |
| MS.gene00315.t1 | MTR_7g058900 | 70.000 | 220 | 64 | 1 | 1 | 218 | 1 | 220 | 2.98e-106 | 305 |
| MS.gene00315.t1 | MTR_4g083490 | 66.495 | 194 | 63 | 1 | 2 | 193 | 4 | 197 | 3.68e-98 | 285 |
| MS.gene00315.t1 | MTR_2g028790 | 63.918 | 194 | 68 | 1 | 2 | 193 | 6 | 199 | 7.72e-95 | 276 |
| MS.gene00315.t1 | MTR_7g058640 | 63.077 | 195 | 70 | 1 | 1 | 193 | 1 | 195 | 3.90e-91 | 266 |
| MS.gene00315.t1 | MTR_1g111890 | 50.840 | 238 | 96 | 2 | 1 | 217 | 1 | 238 | 1.81e-87 | 258 |
| MS.gene00315.t1 | MTR_7g058640 | 61.628 | 172 | 64 | 1 | 1 | 170 | 1 | 172 | 1.91e-76 | 229 |
| MS.gene00315.t1 | MTR_1g047710 | 60.150 | 133 | 53 | 0 | 53 | 185 | 3 | 135 | 2.40e-56 | 176 |
| MS.gene00315.t1 | MTR_7g058640 | 64.957 | 117 | 41 | 0 | 77 | 193 | 1 | 117 | 2.05e-52 | 166 |
| MS.gene00315.t1 | MTR_4g022470 | 69.091 | 110 | 34 | 0 | 60 | 169 | 8 | 117 | 8.43e-51 | 160 |
| MS.gene00315.t1 | MTR_5g089370 | 35.545 | 211 | 131 | 4 | 7 | 214 | 4 | 212 | 9.18e-39 | 133 |
| MS.gene00315.t1 | MTR_4g052550 | 31.925 | 213 | 140 | 4 | 5 | 214 | 2 | 212 | 1.17e-37 | 130 |
| MS.gene00315.t1 | MTR_4g115390 | 28.372 | 215 | 145 | 4 | 7 | 214 | 4 | 216 | 6.30e-31 | 113 |
| MS.gene00315.t1 | MTR_4g022550 | 68.852 | 61 | 19 | 0 | 157 | 217 | 11 | 71 | 9.29e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00315.t1 | AT4G15780 | 87.709 | 179 | 19 | 2 | 1 | 176 | 1 | 179 | 1.09e-115 | 328 |
| MS.gene00315.t1 | AT1G04760 | 67.273 | 220 | 70 | 1 | 1 | 218 | 1 | 220 | 1.95e-107 | 308 |
| MS.gene00315.t1 | AT1G04760 | 67.273 | 220 | 70 | 1 | 1 | 218 | 1 | 220 | 1.95e-107 | 308 |
| MS.gene00315.t1 | AT2G33120 | 70.455 | 220 | 63 | 1 | 1 | 218 | 1 | 220 | 2.90e-107 | 308 |
| MS.gene00315.t1 | AT2G32670 | 69.545 | 220 | 65 | 1 | 1 | 218 | 66 | 285 | 9.83e-107 | 309 |
| MS.gene00315.t1 | AT2G33120 | 67.982 | 228 | 63 | 1 | 1 | 218 | 1 | 228 | 7.43e-106 | 305 |
| MS.gene00315.t1 | AT1G04750 | 68.950 | 219 | 66 | 1 | 1 | 217 | 1 | 219 | 8.04e-105 | 301 |
| MS.gene00315.t1 | AT3G54300 | 51.250 | 240 | 96 | 3 | 1 | 219 | 1 | 240 | 9.11e-89 | 261 |
| MS.gene00315.t1 | AT3G54300 | 51.250 | 240 | 96 | 3 | 1 | 219 | 1 | 240 | 9.11e-89 | 261 |
| MS.gene00315.t1 | AT3G54300 | 51.250 | 240 | 96 | 3 | 1 | 219 | 1 | 240 | 9.11e-89 | 261 |
| MS.gene00315.t1 | AT2G33110 | 58.904 | 219 | 84 | 2 | 1 | 217 | 1 | 215 | 3.99e-82 | 244 |
| MS.gene00315.t1 | AT2G33110 | 63.462 | 156 | 55 | 1 | 1 | 154 | 1 | 156 | 1.73e-68 | 208 |
| MS.gene00315.t1 | AT1G04750 | 68.085 | 141 | 45 | 0 | 77 | 217 | 1 | 141 | 3.68e-59 | 183 |
| MS.gene00315.t1 | AT1G04750 | 68.085 | 141 | 45 | 0 | 77 | 217 | 1 | 141 | 3.68e-59 | 183 |
| MS.gene00315.t1 | AT1G04750 | 68.085 | 141 | 45 | 0 | 77 | 217 | 1 | 141 | 3.68e-59 | 183 |
| MS.gene00315.t1 | AT5G22360 | 33.178 | 214 | 137 | 4 | 5 | 214 | 2 | 213 | 3.03e-42 | 142 |
| MS.gene00315.t1 | AT5G11150 | 33.645 | 214 | 136 | 4 | 5 | 214 | 2 | 213 | 1.16e-40 | 138 |
| MS.gene00315.t1 | AT5G11150 | 33.645 | 214 | 136 | 4 | 5 | 214 | 2 | 213 | 1.58e-40 | 138 |
| MS.gene00315.t1 | AT4G32150 | 34.737 | 190 | 119 | 4 | 5 | 191 | 2 | 189 | 8.26e-37 | 128 |
| MS.gene00315.t1 | AT2G25340 | 32.632 | 190 | 123 | 4 | 5 | 191 | 2 | 189 | 3.21e-31 | 114 |
| MS.gene00315.t1 | AT2G33120 | 72.093 | 86 | 24 | 0 | 132 | 217 | 52 | 137 | 1.05e-30 | 110 |
| MS.gene00315.t1 | AT3G24890 | 42.268 | 97 | 42 | 2 | 112 | 198 | 15 | 107 | 9.49e-19 | 79.0 |
Find 34 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTGAACAAGGAATT+TGG | 0.190475 | 2.1:-56382030 | MS.gene00315:CDS |
| TCAGAACATGAAAATTAAAT+TGG | 0.225912 | 2.1:-56380777 | MS.gene00315:CDS |
| AAAATTAAATTGGTTGTTCT+TGG | 0.225914 | 2.1:-56380767 | MS.gene00315:CDS |
| AAATTCCTTGTTCAGACTTT+TGG | 0.253010 | 2.1:+56382032 | None:intergenic |
| CTGCTTGCTAACAGATTCTT+TGG | 0.273100 | 2.1:+56382134 | None:intergenic |
| ACTGTAGGTGAACTTGTTAT+TGG | 0.347549 | 2.1:+56383928 | None:intergenic |
| TTCATGTGCTCTTTCATAAT+CGG | 0.353938 | 2.1:+56381913 | None:intergenic |
| TGCAATGGCAGGAAAGTTAC+CGG | 0.427386 | 2.1:+56383979 | None:intergenic |
| AGTCAGCTTTGACACGTTCA+AGG | 0.435569 | 2.1:+56382097 | None:intergenic |
| GTTATCTGGCTCTCTATTTG+TGG | 0.442264 | 2.1:-56380722 | MS.gene00315:CDS |
| AAAGTCTGAACAAGGAATTT+GGG | 0.465281 | 2.1:-56382029 | MS.gene00315:intron |
| GTGAACTTGTTATTGGAAGA+AGG | 0.469932 | 2.1:+56383935 | None:intergenic |
| ATCTGGCTCTCTATTTGTGG+TGG | 0.485999 | 2.1:-56380719 | MS.gene00315:CDS |
| ATCTTCAACAAGAAAATTGA+AGG | 0.492244 | 2.1:+56383892 | None:intergenic |
| AGACACTGAGCTGCAATGGC+AGG | 0.504015 | 2.1:+56383968 | None:intergenic |
| CTGAAGACACTGAGCTGCAA+TGG | 0.506758 | 2.1:+56383964 | None:intergenic |
| CACAGGTCCGTCGGAAGATG+TGG | 0.530944 | 2.1:-56380802 | MS.gene00315:CDS |
| CAAGAAAATTGAAGGTGTGA+TGG | 0.535249 | 2.1:+56383900 | None:intergenic |
| ATATACAGCTTTGTAGCTCG+TGG | 0.541984 | 2.1:-56384034 | MS.gene00315:CDS |
| GCTGACTTTAAGAAAAGATA+CGG | 0.549060 | 2.1:-56382081 | MS.gene00315:CDS |
| TGAAAAGCTATTAAAAGTGA+AGG | 0.564756 | 2.1:-56381863 | MS.gene00315:CDS |
| AGGAAAGTTACCGGTGAACT+CGG | 0.568340 | 2.1:+56383988 | None:intergenic |
| GACACGTTCAAGGAAAGCAA+TGG | 0.576248 | 2.1:+56382107 | None:intergenic |
| GCTCAAGATTTCAGAAAGCA+AGG | 0.582915 | 2.1:-56380827 | MS.gene00315:CDS |
| GCTGAGTACACCGAGTTCAC+CGG | 0.585850 | 2.1:-56383998 | MS.gene00315:CDS |
| TTTCAGAAAGCAAGGAACAC+AGG | 0.591739 | 2.1:-56380819 | MS.gene00315:CDS |
| AGCAAGGAACACAGGTCCGT+CGG | 0.592470 | 2.1:-56380811 | MS.gene00315:CDS |
| TTTAAGAAAAGATACGGTGG+TGG | 0.612427 | 2.1:-56382075 | MS.gene00315:CDS |
| TATTGCCAAAAGTCTGAACA+AGG | 0.635316 | 2.1:-56382037 | MS.gene00315:CDS |
| CTTTGTAGCTCGTGGAACGA+TGG | 0.636038 | 2.1:-56384026 | MS.gene00315:CDS |
| CATGTTAGAAAATATAGACA+AGG | 0.648118 | 2.1:-56381815 | MS.gene00315:intron |
| GGTGTGATGGTCACAACTGT+AGG | 0.651595 | 2.1:+56383913 | None:intergenic |
| TCTGATACCACATCTTCCGA+CGG | 0.674197 | 2.1:+56380795 | None:intergenic |
| GACTTTAAGAAAAGATACGG+TGG | 0.697543 | 2.1:-56382078 | MS.gene00315:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTATATTAAATTT+GGG | - | chr2.1:56381451-56381470 | MS.gene00315:intron | 0.0% |
| !!! | TTATTTTTTTATATTAAATT+TGG | - | chr2.1:56381450-56381469 | MS.gene00315:intron | 0.0% |
| !! | AAAAATAATTCTTAGAATTT+CGG | + | chr2.1:56381438-56381457 | None:intergenic | 10.0% |
| !! | GTATAAAATGTTTAATAATA+TGG | - | chr2.1:56382801-56382820 | MS.gene00315:intron | 10.0% |
| !! | ATAAAAGCTTATTATTAGTA+AGG | - | chr2.1:56382224-56382243 | MS.gene00315:intron | 15.0% |
| !! | CAAATATAGACAATAATTAA+TGG | + | chr2.1:56381981-56382000 | None:intergenic | 15.0% |
| !! | CATTAATTATTGTCTATATT+TGG | - | chr2.1:56381979-56381998 | MS.gene00315:intron | 15.0% |
| !!! | TTTTAGAAAAAGATAAACTT+TGG | - | chr2.1:56382043-56382062 | MS.gene00315:CDS | 15.0% |
| !! | AAAATTAAATTGGTTGTTCT+TGG | - | chr2.1:56383985-56384004 | MS.gene00315:CDS | 20.0% |
| !! | ATTATTGTCTATATTTGGAT+TGG | - | chr2.1:56381984-56382003 | MS.gene00315:intron | 20.0% |
| !! | ATTCAAAAACCGTATTAAAA+TGG | + | chr2.1:56381516-56381535 | None:intergenic | 20.0% |
| !! | CCAGTAATTATTTGAAAAAA+TGG | - | chr2.1:56383369-56383388 | MS.gene00315:intron | 20.0% |
| !! | CTTAAATAGAGCTTAAAATA+AGG | + | chr2.1:56383694-56383713 | None:intergenic | 20.0% |
| !! | TCAGAACATGAAAATTAAAT+TGG | - | chr2.1:56383975-56383994 | MS.gene00315:CDS | 20.0% |
| !! | TGTAATTAAAGAACATTGAA+AGG | - | chr2.1:56381930-56381949 | MS.gene00315:intron | 20.0% |
| !! | TTTATATTAAATTTGGGGAA+GGG | - | chr2.1:56381457-56381476 | MS.gene00315:intron | 20.0% |
| !! | TTTATTGAGTTCTCTAATTA+AGG | - | chr2.1:56381147-56381166 | MS.gene00315:intron | 20.0% |
| !!! | AAAATGGATTGTAAATTAGT+AGG | + | chr2.1:56383052-56383071 | None:intergenic | 20.0% |
| !!! | AAGTATTTGTTTTTGGATTT+TGG | - | chr2.1:56381614-56381633 | MS.gene00315:intron | 20.0% |
| !!! | ATAAGCTTTTATATGTTTGT+AGG | + | chr2.1:56382216-56382235 | None:intergenic | 20.0% |
| !!! | ATCTTTTTCTAAAATCACAA+TGG | + | chr2.1:56382037-56382056 | None:intergenic | 20.0% |
| !!! | ATTAAGGTAAATGATTTTTG+TGG | - | chr2.1:56381181-56381200 | MS.gene00315:intron | 20.0% |
| !!! | ATTAGTTATGCATTCTTTTT+AGG | - | chr2.1:56381655-56381674 | MS.gene00315:intron | 20.0% |
| !!! | ATTTTAATACGGTTTTTGAA+TGG | - | chr2.1:56381515-56381534 | MS.gene00315:intron | 20.0% |
| !!! | CCATTTTTTCAAATAATTAC+TGG | + | chr2.1:56383372-56383391 | None:intergenic | 20.0% |
| !!! | CTTTAATCATTTATGTTTTC+AGG | - | chr2.1:56383763-56383782 | MS.gene00315:intron | 20.0% |
| !!! | GAAAAGATTTTGTAATTTTC+AGG | - | chr2.1:56383903-56383922 | MS.gene00315:CDS | 20.0% |
| !!! | TTTAAAATCTAAGCAAACAA+CGG | + | chr2.1:56382515-56382534 | None:intergenic | 20.0% |
| !!! | TTTTATATTAAATTTGGGGA+AGG | - | chr2.1:56381456-56381475 | MS.gene00315:intron | 20.0% |
| ! | AAATGTTAAGAACAATGTGA+AGG | - | chr2.1:56383242-56383261 | MS.gene00315:intron | 25.0% |
| ! | ACAACAGTGATTAAATGATT+AGG | + | chr2.1:56383556-56383575 | None:intergenic | 25.0% |
| ! | ATCTTCAACAAGAAAATTGA+AGG | + | chr2.1:56380863-56380882 | None:intergenic | 25.0% |
| ! | CATGTTAGAAAATATAGACA+AGG | - | chr2.1:56382937-56382956 | MS.gene00315:intron | 25.0% |
| ! | TAAAGGATTGACAAAATGAT+CGG | + | chr2.1:56381743-56381762 | None:intergenic | 25.0% |
| ! | TGAAAAGCTATTAAAAGTGA+AGG | - | chr2.1:56382889-56382908 | MS.gene00315:intron | 25.0% |
| ! | TGTCATTAGATGATTAAATC+CGG | - | chr2.1:56381221-56381240 | MS.gene00315:intron | 25.0% |
| !! | AAAGAACATTGAAAGGATTT+TGG | - | chr2.1:56381937-56381956 | MS.gene00315:intron | 25.0% |
| !! | AATCTGAATTGTGTGTTTTT+AGG | - | chr2.1:56380982-56381001 | MS.gene00315:intron | 25.0% |
| !! | ATTTTAAGCTCTATTTAAGC+TGG | - | chr2.1:56383695-56383714 | MS.gene00315:intron | 25.0% |
| !! | GAAGTATTAAGAATTTGAGA+GGG | + | chr2.1:56383203-56383222 | None:intergenic | 25.0% |
| !! | TAATAGCTTTTCAATCTCTT+CGG | + | chr2.1:56382882-56382901 | None:intergenic | 25.0% |
| !! | TGAAGTATTAAGAATTTGAG+AGG | + | chr2.1:56383204-56383223 | None:intergenic | 25.0% |
| !! | TGTGGAATGTTGTTATATTT+TGG | - | chr2.1:56381076-56381095 | MS.gene00315:intron | 25.0% |
| !! | TTCAATTTTCTTGTTGAAGA+TGG | - | chr2.1:56380862-56380881 | MS.gene00315:intron | 25.0% |
| !! | TTGCTTAGATTTTAAACATC+AGG | - | chr2.1:56382519-56382538 | MS.gene00315:intron | 25.0% |
| !!! | AAAGGATTTTGGAATGATTA+CGG | - | chr2.1:56381948-56381967 | MS.gene00315:intron | 25.0% |
| !!! | CACTAATGACCATTTTAATA+CGG | - | chr2.1:56381504-56381523 | MS.gene00315:intron | 25.0% |
| !!! | GCTTAAAGTTTTGATCTTTT+TGG | - | chr2.1:56381025-56381044 | MS.gene00315:intron | 25.0% |
| !!! | TAAAGTTTGTTGACATCTTT+AGG | - | chr2.1:56382762-56382781 | MS.gene00315:intron | 25.0% |
| !!! | TAAGGTTTGTTAGTCAATTA+AGG | - | chr2.1:56381165-56381184 | MS.gene00315:intron | 25.0% |
| !!! | TAGTTTTTGAGTTGTGATTA+GGG | - | chr2.1:56381824-56381843 | MS.gene00315:CDS | 25.0% |
| !!! | TTCACGTTTTCTCTAAAAAT+GGG | - | chr2.1:56383070-56383089 | MS.gene00315:intron | 25.0% |
| !!! | TTTCACGTTTTCTCTAAAAA+TGG | - | chr2.1:56383069-56383088 | MS.gene00315:intron | 25.0% |
| !!! | TTTTAGAGAAAACGTGAAAA+TGG | + | chr2.1:56383068-56383087 | None:intergenic | 25.0% |
| !!! | TTTTGGTGATTGAAGTAAAT+AGG | - | chr2.1:56381093-56381112 | MS.gene00315:intron | 25.0% |
| AAAAACAAATACTTCTAGCC+TGG | + | chr2.1:56381608-56381627 | None:intergenic | 30.0% | |
| AAAAGTCTGAACAAGGAATT+TGG | - | chr2.1:56382722-56382741 | MS.gene00315:intron | 30.0% | |
| AAAGTCTGAACAAGGAATTT+GGG | - | chr2.1:56382723-56382742 | MS.gene00315:intron | 30.0% | |
| AACAATGTGAAGGACATAAT+TGG | - | chr2.1:56383252-56383271 | MS.gene00315:intron | 30.0% | |
| AGACAATGCAAGAAATTCAT+AGG | + | chr2.1:56383631-56383650 | None:intergenic | 30.0% | |
| ATAACTGTGGTAGAAAATGA+TGG | + | chr2.1:56383014-56383033 | None:intergenic | 30.0% | |
| ATAATTCTTAGAATTTCGGC+TGG | + | chr2.1:56381434-56381453 | None:intergenic | 30.0% | |
| ATGCAAACATTGTTCAAACA+AGG | - | chr2.1:56381772-56381791 | MS.gene00315:intron | 30.0% | |
| CAATAATCAGGGATATTGAT+GGG | - | chr2.1:56381713-56381732 | MS.gene00315:intron | 30.0% | |
| CCTAACTCAACTTATAAAAC+CGG | + | chr2.1:56381410-56381429 | None:intergenic | 30.0% | |
| TAACTGTGGTAGAAAATGAT+GGG | + | chr2.1:56383013-56383032 | None:intergenic | 30.0% | |
| TAATTCTTAGAATTTCGGCT+GGG | + | chr2.1:56381433-56381452 | None:intergenic | 30.0% | |
| TCAATAATCAGGGATATTGA+TGG | - | chr2.1:56381712-56381731 | MS.gene00315:intron | 30.0% | |
| TGCAAACATTGTTCAAACAA+GGG | - | chr2.1:56381773-56381792 | MS.gene00315:intron | 30.0% | |
| TGTTATATTTAGTGAGAGCA+TGG | + | chr2.1:56382445-56382464 | None:intergenic | 30.0% | |
| TTCATGTGCTCTTTCATAAT+CGG | + | chr2.1:56382842-56382861 | None:intergenic | 30.0% | |
| TTCTACCACAGTTATCATTA+TGG | - | chr2.1:56383019-56383038 | MS.gene00315:intron | 30.0% | |
| TTTCTTGTTGAAGATGGTTA+TGG | - | chr2.1:56380868-56380887 | MS.gene00315:intron | 30.0% | |
| ! | AAATTCCTTGTTCAGACTTT+TGG | + | chr2.1:56382723-56382742 | None:intergenic | 30.0% |
| ! | AGTTACTCAAAGTTTCAAGT+GGG | + | chr2.1:56383599-56383618 | None:intergenic | 30.0% |
| ! | GCTGACTTTAAGAAAAGATA+CGG | - | chr2.1:56382671-56382690 | MS.gene00315:intron | 30.0% |
| ! | TGTTTATATCCGAAACCTTT+TGG | + | chr2.1:56382193-56382212 | None:intergenic | 30.0% |
| !! | TCCATTTTTCCAAAAGGTTT+CGG | - | chr2.1:56382181-56382200 | MS.gene00315:intron | 30.0% |
| !!! | AATTCTGTTGTTTTTGGTTC+TGG | - | chr2.1:56384008-56384027 | MS.gene00315:CDS | 30.0% |
| !!! | AGACAAGGTACTGTTTTTTT+AGG | - | chr2.1:56382952-56382971 | MS.gene00315:intron | 30.0% |
| !!! | AGGCTAGAAGTATTTGTTTT+TGG | - | chr2.1:56381607-56381626 | MS.gene00315:intron | 30.0% |
| !!! | GGTTTTTGAGTTGATTTTAG+TGG | - | chr2.1:56381046-56381065 | MS.gene00315:intron | 30.0% |
| !!! | GTAGTTTTTGAGTTGTGATT+AGG | - | chr2.1:56381823-56381842 | MS.gene00315:CDS | 30.0% |
| !!! | TCTTGGAATTCTGTTGTTTT+TGG | - | chr2.1:56384002-56384021 | MS.gene00315:CDS | 30.0% |
| !!! | TTTGAGTTGATTTTAGTGGT+GGG | - | chr2.1:56381050-56381069 | MS.gene00315:intron | 30.0% |
| !!! | TTTTGAGTTGATTTTAGTGG+TGG | - | chr2.1:56381049-56381068 | MS.gene00315:intron | 30.0% |
| AAAACAATGCTGTCTAACCT+TGG | + | chr2.1:56383860-56383879 | None:intergenic | 35.0% | |
| AACATTGCAATATGTAGCAC+TGG | + | chr2.1:56383485-56383504 | None:intergenic | 35.0% | |
| AGGATCCATAATGATAACTG+TGG | + | chr2.1:56383027-56383046 | None:intergenic | 35.0% | |
| CAGTTACTCAAAGTTTCAAG+TGG | + | chr2.1:56383600-56383619 | None:intergenic | 35.0% | |
| GATTTGAACTCAATACCTTG+AGG | - | chr2.1:56381537-56381556 | MS.gene00315:intron | 35.0% | |
| GCTGCAATTTATAGAAAGCA+CGG | + | chr2.1:56382584-56382603 | None:intergenic | 35.0% | |
| GGATTGTAAATTAGTAGGAC+AGG | + | chr2.1:56383047-56383066 | None:intergenic | 35.0% | |
| GTTTGCATGACTATCACTAA+AGG | + | chr2.1:56381760-56381779 | None:intergenic | 35.0% | |
| TATTGCCAAAAGTCTGAACA+AGG | - | chr2.1:56382715-56382734 | MS.gene00315:intron | 35.0% | |
| TGATTAGGGTGCAATAGAAA+TGG | - | chr2.1:56381838-56381857 | MS.gene00315:CDS | 35.0% | |
| TTGGAGCTTCAACAAAATCA+CGG | - | chr2.1:56382062-56382081 | MS.gene00315:CDS | 35.0% | |
| TTTAAGAAAAGATACGGTGG+TGG | - | chr2.1:56382677-56382696 | MS.gene00315:intron | 35.0% | |
| ! | ATATTTAGTGAGAGCATGGA+AGG | + | chr2.1:56382441-56382460 | None:intergenic | 35.0% |
| ! | CAAGAAAATTGAAGGTGTGA+TGG | + | chr2.1:56380855-56380874 | None:intergenic | 35.0% |
| ! | GACTTTAAGAAAAGATACGG+TGG | - | chr2.1:56382674-56382693 | MS.gene00315:intron | 35.0% |
| ! | GTAGAAAATGATGGGATATC+AGG | + | chr2.1:56383005-56383024 | None:intergenic | 35.0% |
| !! | ACTGTAGGTGAACTTGTTAT+TGG | + | chr2.1:56380827-56380846 | None:intergenic | 35.0% |
| !! | ACTTATAAAACCGGCTTGTA+AGG | + | chr2.1:56381401-56381420 | None:intergenic | 35.0% |
| !! | CCGGTTTTATAAGTTGAGTT+AGG | - | chr2.1:56381407-56381426 | MS.gene00315:intron | 35.0% |
| !! | GTGAACTTGTTATTGGAAGA+AGG | + | chr2.1:56380820-56380839 | None:intergenic | 35.0% |
| !! | GTTTTCTCTAAAAATGGGAG+TGG | - | chr2.1:56383075-56383094 | MS.gene00315:intron | 35.0% |
| !! | TACAGCTCCATTTTTCCAAA+AGG | - | chr2.1:56382175-56382194 | MS.gene00315:intron | 35.0% |
| !! | TCCGAAACCTTTTGGAAAAA+TGG | + | chr2.1:56382185-56382204 | None:intergenic | 35.0% |
| !! | TGTTTTCAGGCTATTGATAG+AGG | - | chr2.1:56383776-56383795 | MS.gene00315:intron | 35.0% |
| !!! | AATTGTGTGTTTTTAGGCGA+TGG | - | chr2.1:56380988-56381007 | MS.gene00315:intron | 35.0% |
| !!! | GGTACTGTTTTTTTAGGAAC+AGG | - | chr2.1:56382958-56382977 | MS.gene00315:intron | 35.0% |
| !!! | GTTTTTTTAGGAACAGGACT+TGG | - | chr2.1:56382964-56382983 | MS.gene00315:intron | 35.0% |
| !!! | TGTTTTTGGTTCTGGTTATC+TGG | - | chr2.1:56384016-56384035 | MS.gene00315:CDS | 35.0% |
| AAGGGTTAATCTTGTGTCTG+TGG | - | chr2.1:56381791-56381810 | MS.gene00315:intron | 40.0% | |
| AAGTTGACTATGTGCACGTT+TGG | + | chr2.1:56382121-56382140 | None:intergenic | 40.0% | |
| AATGGATGGTCATTGATCAG+TGG | - | chr2.1:56381856-56381875 | MS.gene00315:CDS | 40.0% | |
| ACTACACAGACCATATCTCT+AGG | + | chr2.1:56381354-56381373 | None:intergenic | 40.0% | |
| CACTCAACACAATGAAGTGT+TGG | + | chr2.1:56381303-56381322 | None:intergenic | 40.0% | |
| CAGCTAATAACACTTGTAGC+CGG | + | chr2.1:56381243-56381262 | None:intergenic | 40.0% | |
| GAGCTGTAGAAGTAGAAAGT+TGG | + | chr2.1:56382163-56382182 | None:intergenic | 40.0% | |
| GCCTTGTCTGTCAATAATCA+GGG | - | chr2.1:56381702-56381721 | MS.gene00315:intron | 40.0% | |
| GCTCAAGATTTCAGAAAGCA+AGG | - | chr2.1:56383925-56383944 | MS.gene00315:CDS | 40.0% | |
| TAGGGTGCAATAGAAATGGA+TGG | - | chr2.1:56381842-56381861 | MS.gene00315:CDS | 40.0% | |
| TCCCTGATTATTGACAGACA+AGG | + | chr2.1:56381706-56381725 | None:intergenic | 40.0% | |
| TCTCACATTGCCTAGAGATA+TGG | - | chr2.1:56381341-56381360 | MS.gene00315:intron | 40.0% | |
| TGAACTCAATACCTTGAGGT+AGG | - | chr2.1:56381541-56381560 | MS.gene00315:intron | 40.0% | |
| TGACTTTGTAACCTACCTCA+AGG | + | chr2.1:56381555-56381574 | None:intergenic | 40.0% | |
| TGCCCTGATACTCTCTATAA+AGG | + | chr2.1:56382372-56382391 | None:intergenic | 40.0% | |
| TGTTATTAGCTGCCTAACTG+CGG | - | chr2.1:56381251-56381270 | MS.gene00315:intron | 40.0% | |
| TTCATTGTGTTGAGTGCGAA+GGG | - | chr2.1:56381307-56381326 | MS.gene00315:intron | 40.0% | |
| TTGTGTTTGTGTGTGTTGCA+TGG | - | chr2.1:56380917-56380936 | MS.gene00315:intron | 40.0% | |
| TTTCAGAAAGCAAGGAACAC+AGG | - | chr2.1:56383933-56383952 | MS.gene00315:CDS | 40.0% | |
| ! | ACTCTCTATAAAGGCGTATC+TGG | + | chr2.1:56382363-56382382 | None:intergenic | 40.0% |
| ! | AGCCTTGTCTGTCAATAATC+AGG | - | chr2.1:56381701-56381720 | MS.gene00315:intron | 40.0% |
| ! | ATATACAGCTTTGTAGCTCG+TGG | - | chr2.1:56380718-56380737 | MS.gene00315:CDS | 40.0% |
| ! | CTGCTTGCTAACAGATTCTT+TGG | + | chr2.1:56382621-56382640 | None:intergenic | 40.0% |
| ! | GGAGTGGATTTGATTCTGAT+AGG | - | chr2.1:56383096-56383115 | MS.gene00315:intron | 40.0% |
| ! | TCAAATGTCACTTCATGACC+AGG | - | chr2.1:56381587-56381606 | MS.gene00315:intron | 40.0% |
| !! | AAAACCGGCTTGTAAGGTAA+GGG | + | chr2.1:56381395-56381414 | None:intergenic | 40.0% |
| !! | ACGCCTTTATAGAGAGTATC+AGG | - | chr2.1:56382366-56382385 | MS.gene00315:intron | 40.0% |
| !! | ATTTGGATTGGCAGTGAGTT+TGG | - | chr2.1:56381996-56382015 | MS.gene00315:intron | 40.0% |
| !! | CGCCTTTATAGAGAGTATCA+GGG | - | chr2.1:56382367-56382386 | MS.gene00315:intron | 40.0% |
| !! | GTTATCTGGCTCTCTATTTG+TGG | - | chr2.1:56384030-56384049 | MS.gene00315:CDS | 40.0% |
| !! | TAAAACCGGCTTGTAAGGTA+AGG | + | chr2.1:56381396-56381415 | None:intergenic | 40.0% |
| !! | TCAACACAATGAAGTGTTGG+AGG | + | chr2.1:56381300-56381319 | None:intergenic | 40.0% |
| !!! | GATTTTAGTGGTGGGTTTTG+TGG | - | chr2.1:56381058-56381077 | MS.gene00315:intron | 40.0% |
| AACTGAGCAGAGCTTTGCTT+TGG | + | chr2.1:56383670-56383689 | None:intergenic | 45.0% | |
| AGGAAAGTTACCGGTGAACT+CGG | + | chr2.1:56380767-56380786 | None:intergenic | 45.0% | |
| CACACATGTCAATGCCATGT+TGG | - | chr2.1:56383408-56383427 | MS.gene00315:intron | 45.0% | |
| CTTCATTGTGTTGAGTGCGA+AGG | - | chr2.1:56381306-56381325 | MS.gene00315:intron | 45.0% | |
| GACACGTTCAAGGAAAGCAA+TGG | + | chr2.1:56382648-56382667 | None:intergenic | 45.0% | |
| GGCACTTCAAATTGAAGGCA+TGG | + | chr2.1:56383464-56383483 | None:intergenic | 45.0% | |
| TCATCGACACTGCTCGAAAA+TGG | + | chr2.1:56383160-56383179 | None:intergenic | 45.0% | |
| TCATTGTGTTGAGTGCGAAG+GGG | - | chr2.1:56381308-56381327 | MS.gene00315:intron | 45.0% | |
| TCTGATACCACATCTTCCGA+CGG | + | chr2.1:56383960-56383979 | None:intergenic | 45.0% | |
| TGACAGACAAGGCTACAAGA+TGG | + | chr2.1:56381695-56381714 | None:intergenic | 45.0% | |
| TGCAATGGCAGGAAAGTTAC+CGG | + | chr2.1:56380776-56380795 | None:intergenic | 45.0% | |
| ! | AGTCAGCTTTGACACGTTCA+AGG | + | chr2.1:56382658-56382677 | None:intergenic | 45.0% |
| ! | CAGTGAGTTTGGTGGAATCA+CGG | - | chr2.1:56382007-56382026 | MS.gene00315:intron | 45.0% |
| ! | CTCTAAAAATGGGAGTGGAG+TGG | - | chr2.1:56383080-56383099 | MS.gene00315:intron | 45.0% |
| ! | CTTCAAATTGAAGGCATGGC+TGG | + | chr2.1:56383460-56383479 | None:intergenic | 45.0% |
| ! | GCACTGGCACTTCAAATTGA+AGG | + | chr2.1:56383469-56383488 | None:intergenic | 45.0% |
| ! | GTCAATGCCATGTTGGTGTT+TGG | - | chr2.1:56383415-56383434 | MS.gene00315:intron | 45.0% |
| !! | ATCTGGCTCTCTATTTGTGG+TGG | - | chr2.1:56384033-56384052 | MS.gene00315:CDS | 45.0% |
| !! | ATGGCATTGACATGTGTGGT+TGG | + | chr2.1:56383406-56383425 | None:intergenic | 45.0% |
| !! | CAACATGGCATTGACATGTG+TGG | + | chr2.1:56383410-56383429 | None:intergenic | 45.0% |
| !! | GAAGCACTGACACAGACATT+GGG | - | chr2.1:56383339-56383358 | MS.gene00315:intron | 45.0% |
| !! | TGGCATTGACATGTGTGGTT+GGG | + | chr2.1:56383405-56383424 | None:intergenic | 45.0% |
| !! | TATAAAATGTTTAATAATAT+GGG | - | chr2.1:56382802-56382821 | MS.gene00315:intron | 5.0% |
| !!! | ATTTTTTTATATTAAATTTG+GGG | - | chr2.1:56381452-56381471 | MS.gene00315:intron | 5.0% |
| CAAAACTGCCAGTGTGAGGA+AGG | + | chr2.1:56383304-56383323 | None:intergenic | 50.0% | |
| CAGACAAAACTGCCAGTGTG+AGG | + | chr2.1:56383308-56383327 | None:intergenic | 50.0% | |
| CATTGTGTTGAGTGCGAAGG+GGG | - | chr2.1:56381309-56381328 | MS.gene00315:intron | 50.0% | |
| CTGAAGACACTGAGCTGCAA+TGG | + | chr2.1:56380791-56380810 | None:intergenic | 50.0% | |
| CTTTGTAGCTCGTGGAACGA+TGG | - | chr2.1:56380726-56380745 | MS.gene00315:CDS | 50.0% | |
| GCTACCCTTACCTTACAAGC+CGG | - | chr2.1:56381388-56381407 | MS.gene00315:intron | 50.0% | |
| GGATGGTCATTGATCAGTGG+AGG | - | chr2.1:56381859-56381878 | MS.gene00315:CDS | 50.0% | |
| GGTGTGATGGTCACAACTGT+AGG | + | chr2.1:56380842-56380861 | None:intergenic | 50.0% | |
| GTATCTGGTGAGAACGTGAG+AGG | + | chr2.1:56382348-56382367 | None:intergenic | 50.0% | |
| TGTCTGTGTCAGTGCTTCGT+AGG | + | chr2.1:56383337-56383356 | None:intergenic | 50.0% | |
| ! | AGTGTTGGAGGCTGCAATGA+AGG | + | chr2.1:56381288-56381307 | None:intergenic | 50.0% |
| ! | GCGCACAAGTAAGTTGACCA+AGG | - | chr2.1:56383840-56383859 | MS.gene00315:intron | 50.0% |
| !! | CGAAGCACTGACACAGACAT+TGG | - | chr2.1:56383338-56383357 | MS.gene00315:intron | 50.0% |
| !! | GTTGGTGCCAAACACCAACA+TGG | + | chr2.1:56383425-56383444 | None:intergenic | 50.0% |
| !! | TGGATTGGCAGTGAGTTTGG+TGG | - | chr2.1:56381999-56382018 | MS.gene00315:intron | 50.0% |
| AGACACTGAGCTGCAATGGC+AGG | + | chr2.1:56380787-56380806 | None:intergenic | 55.0% | |
| AGCAAGGAACACAGGTCCGT+CGG | - | chr2.1:56383941-56383960 | MS.gene00315:CDS | 55.0% | |
| GCTGAGTACACCGAGTTCAC+CGG | - | chr2.1:56380754-56380773 | MS.gene00315:CDS | 55.0% | |
| TCCTTGCTCCTTCCTCACAC+TGG | - | chr2.1:56383293-56383312 | MS.gene00315:intron | 55.0% | |
| AGCTGCCTAACTGCGGCGTT+TGG | - | chr2.1:56381258-56381277 | MS.gene00315:intron | 60.0% | |
| CACAGGTCCGTCGGAAGATG+TGG | - | chr2.1:56383950-56383969 | MS.gene00315:CDS | 60.0% | |
| GCAACCCAAACGCCGCAGTT+AGG | + | chr2.1:56381266-56381285 | None:intergenic | 60.0% | |
| GCCAGTGTGAGGAAGGAGCA+AGG | + | chr2.1:56383297-56383316 | None:intergenic | 60.0% | |
| GCTGCCTAACTGCGGCGTTT+GGG | - | chr2.1:56381259-56381278 | MS.gene00315:intron | 60.0% | |
| GGCTGGTGTCTGACACGTGT+TGG | + | chr2.1:56383443-56383462 | None:intergenic | 60.0% | |
| TGTGTTGAGTGCGAAGGGGG+TGG | - | chr2.1:56381312-56381331 | MS.gene00315:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 56380700 | 56384074 | 56380700 | ID=MS.gene00315 |
| chr2.1 | mRNA | 56380700 | 56384074 | 56380700 | ID=MS.gene00315.t1;Parent=MS.gene00315 |
| chr2.1 | exon | 56383891 | 56384074 | 56383891 | ID=MS.gene00315.t1.exon1;Parent=MS.gene00315.t1 |
| chr2.1 | CDS | 56383891 | 56384074 | 56383891 | ID=cds.MS.gene00315.t1;Parent=MS.gene00315.t1 |
| chr2.1 | exon | 56382030 | 56382171 | 56382030 | ID=MS.gene00315.t1.exon2;Parent=MS.gene00315.t1 |
| chr2.1 | CDS | 56382030 | 56382171 | 56382030 | ID=cds.MS.gene00315.t1;Parent=MS.gene00315.t1 |
| chr2.1 | exon | 56381816 | 56381936 | 56381816 | ID=MS.gene00315.t1.exon3;Parent=MS.gene00315.t1 |
| chr2.1 | CDS | 56381816 | 56381936 | 56381816 | ID=cds.MS.gene00315.t1;Parent=MS.gene00315.t1 |
| chr2.1 | exon | 56380927 | 56380989 | 56380927 | ID=MS.gene00315.t1.exon4;Parent=MS.gene00315.t1 |
| chr2.1 | CDS | 56380927 | 56380989 | 56380927 | ID=cds.MS.gene00315.t1;Parent=MS.gene00315.t1 |
| chr2.1 | exon | 56380700 | 56380849 | 56380700 | ID=MS.gene00315.t1.exon5;Parent=MS.gene00315.t1 |
| chr2.1 | CDS | 56380700 | 56380849 | 56380700 | ID=cds.MS.gene00315.t1;Parent=MS.gene00315.t1 |
| Gene Sequence |
| Protein sequence |
