AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77217

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77217.t1 MTR_7g058900 98.643 221 3 0 1 221 1 221 1.02e-163 451
MS.gene77217.t1 MTR_1g047720 80.822 219 42 0 1 219 1 219 3.39e-139 389
MS.gene77217.t1 MTR_4g022570 84.475 219 34 0 1 219 1 219 1.50e-130 367
MS.gene77217.t1 MTR_2g436870 70.455 220 65 0 1 220 1 220 1.20e-120 342
MS.gene77217.t1 MTR_4g083490 79.275 193 40 0 3 195 5 197 4.85e-118 335
MS.gene77217.t1 MTR_2g028790 75.648 193 47 0 3 195 7 199 2.46e-113 323
MS.gene77217.t1 MTR_7g058640 71.795 195 55 0 1 195 1 195 5.61e-105 301
MS.gene77217.t1 MTR_1g111890 55.042 238 88 1 1 219 1 238 6.01e-98 285
MS.gene77217.t1 MTR_7g058640 71.512 172 49 0 1 172 1 172 1.03e-91 267
MS.gene77217.t1 MTR_1g047710 80.645 124 24 0 64 187 12 135 2.60e-72 216
MS.gene77217.t1 MTR_4g022470 82.407 108 19 0 64 171 10 117 3.90e-61 187
MS.gene77217.t1 MTR_7g058640 70.940 117 34 0 79 195 1 117 9.66e-58 179
MS.gene77217.t1 MTR_4g052550 37.089 213 131 3 5 216 2 212 2.66e-48 158
MS.gene77217.t1 MTR_5g089370 37.736 212 129 3 6 216 3 212 3.59e-47 155
MS.gene77217.t1 MTR_4g115390 32.870 216 138 3 6 216 3 216 1.69e-41 140
MS.gene77217.t1 MTR_4g022550 85.484 62 9 0 158 219 10 71 1.89e-20 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77217.t1 AT1G04760 83.636 220 36 0 1 220 1 220 7.07e-135 377
MS.gene77217.t1 AT1G04760 83.636 220 36 0 1 220 1 220 7.07e-135 377
MS.gene77217.t1 AT2G32670 84.545 220 34 0 1 220 66 285 9.38e-131 370
MS.gene77217.t1 AT2G33120 85.068 221 33 0 1 221 1 221 1.84e-130 367
MS.gene77217.t1 AT1G04750 83.562 219 36 0 1 219 1 219 1.10e-127 359
MS.gene77217.t1 AT2G33120 81.659 229 34 1 1 221 1 229 9.27e-127 357
MS.gene77217.t1 AT3G54300 56.067 239 86 1 1 220 1 239 1.99e-101 294
MS.gene77217.t1 AT3G54300 56.067 239 86 1 1 220 1 239 1.99e-101 294
MS.gene77217.t1 AT3G54300 56.067 239 86 1 1 220 1 239 1.99e-101 294
MS.gene77217.t1 AT2G33110 69.231 221 64 1 1 221 1 217 1.95e-98 285
MS.gene77217.t1 AT4G15780 69.274 179 54 1 1 178 1 179 8.51e-91 265
MS.gene77217.t1 AT2G33110 72.222 162 45 0 1 162 1 162 9.65e-86 252
MS.gene77217.t1 AT1G04750 81.560 141 26 0 79 219 1 141 1.11e-69 209
MS.gene77217.t1 AT1G04750 81.560 141 26 0 79 219 1 141 1.11e-69 209
MS.gene77217.t1 AT1G04750 81.560 141 26 0 79 219 1 141 1.11e-69 209
MS.gene77217.t1 AT5G22360 38.785 214 127 3 5 216 2 213 5.44e-54 172
MS.gene77217.t1 AT5G11150 39.535 215 124 5 5 216 2 213 2.29e-51 166
MS.gene77217.t1 AT5G11150 39.535 215 124 5 5 216 2 213 3.26e-51 166
MS.gene77217.t1 AT4G32150 38.028 213 129 3 5 216 2 212 4.96e-48 157
MS.gene77217.t1 AT2G25340 37.368 190 116 3 5 193 2 189 1.27e-41 141
MS.gene77217.t1 AT2G33120 84.375 96 15 0 126 221 44 139 3.19e-38 129
MS.gene77217.t1 AT3G24890 56.383 94 35 2 113 200 14 107 2.54e-26 99.0
MS.gene77217.t1 AT3G24890 53.846 65 26 1 110 174 11 71 1.56e-15 69.3
MS.gene77217.t1 AT3G24890 53.846 65 26 1 110 174 11 71 1.56e-15 69.3
MS.gene77217.t1 AT3G24890 53.846 65 26 1 110 174 11 71 1.56e-15 69.3
MS.gene77217.t1 AT3G24890 53.846 65 26 1 110 174 11 71 1.56e-15 69.3

Find 46 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGCTTTATCTTCATATTT+TGG 0.145204 7.2:-37431874 None:intergenic
AAAGAACAATAATGAGAATT+AGG 0.159352 7.2:-37431919 None:intergenic
GAAGATAAAGCTAATTGTTC+TGG 0.270272 7.2:+37431883 MS.gene77217:CDS
TGTTTGACGAAGGAAGTTTC+TGG 0.287492 7.2:-37429235 None:intergenic
AAGAGTCTCAATAAAGAGTT+TGG 0.290106 7.2:+37430394 MS.gene77217:CDS
TTCAATTACCTCGTTGATAG+TGG 0.342877 7.2:+37429290 MS.gene77217:CDS
GAAAGCTTGCTAATCTCCTC+TGG 0.379999 7.2:-37430540 None:intergenic
AAGAACAATAATGAGAATTA+GGG 0.385939 7.2:-37431918 None:intergenic
GTTGTTGCTGTTGAGTCTGC+TGG 0.391522 7.2:+37430283 MS.gene77217:CDS
GGCAATGGCGGTGAAGTTAC+CGG 0.406184 7.2:-37429201 None:intergenic
AATCTTCCTTGATACGTTCA+AGG 0.408743 7.2:-37430327 None:intergenic
ATACGTTCAAGGAAAGCAAT+TGG 0.426895 7.2:-37430316 None:intergenic
GACAGAGAACCTTCGCTCTC+AGG 0.438230 7.2:+37430857 MS.gene77217:CDS
TGCTTTCCTTGAACGTATCA+AGG 0.453306 7.2:+37430321 MS.gene77217:CDS
AAGATAAAGCTAATTGTTCT+GGG 0.458032 7.2:+37431884 MS.gene77217:CDS
ATTATTGTTCTTTCAATCTG+TGG 0.460900 7.2:+37431929 MS.gene77217:CDS
CTGGAGACACTGCGCGGCAA+TGG 0.468297 7.2:-37429216 None:intergenic
AGAGTCTCAATAAAGAGTTT+GGG 0.514157 7.2:+37430395 MS.gene77217:CDS
ATTGTTCTTTCAATCTGTGG+TGG 0.517961 7.2:+37431932 MS.gene77217:CDS
TTTGGCAGGTTCTGGACCGT+GGG 0.524220 7.2:+37430808 MS.gene77217:intron
GCTTTCTAAAGTGCAAGCTC+AGG 0.524990 7.2:+37430557 MS.gene77217:CDS
AGAGGTCAAAGGAGTTATGA+TGG 0.525035 7.2:+37430584 MS.gene77217:CDS
CCACATGTTCCTCCTAAGCT+TGG 0.532840 7.2:-37431849 None:intergenic
ATCTACAGCTTCGTTGCTCG+TGG 0.534667 7.2:+37429146 MS.gene77217:CDS
GCTGAATACACCGAGTTCAC+CGG 0.541787 7.2:+37429182 MS.gene77217:CDS
GGCAACATGGAACCAAGCTT+AGG 0.549032 7.2:+37431837 MS.gene77217:CDS
ACTATCAACGAGGTAATTGA+AGG 0.553924 7.2:-37429288 None:intergenic
ATGGTGTAGATCTAAGTTGA+AGG 0.560301 7.2:+37430491 MS.gene77217:intron
GCTCAGGTCTCAGAGGTCAA+AGG 0.570543 7.2:+37430573 MS.gene77217:CDS
GGTGAAGTTACCGGTGAACT+CGG 0.577696 7.2:-37429192 None:intergenic
GCACAAGATTTCAGGCAACA+TGG 0.581723 7.2:+37431824 MS.gene77217:CDS
AAGTTCAATTACAATTGCGA+TGG 0.583485 7.2:+37429260 MS.gene77217:CDS
AACATGGAACCAAGCTTAGG+AGG 0.590136 7.2:+37431840 MS.gene77217:CDS
GAGACACTGCGCGGCAATGG+CGG 0.591240 7.2:-37429213 None:intergenic
AAAGCTTGCTAATCTCCTCT+GGG 0.600356 7.2:-37430539 None:intergenic
TATGATGGAGAATATTGAGA+AGG 0.608070 7.2:+37430599 MS.gene77217:CDS
TTGAACTTATTGTTTGACGA+AGG 0.622247 7.2:-37429245 None:intergenic
AGTGCAAGCTCAGGTCTCAG+AGG 0.652865 7.2:+37430566 MS.gene77217:CDS
ACCAACAGACCTGAGAGCGA+AGG 0.661970 7.2:-37430866 None:intergenic
TTGCTGTTGAGTCTGCTGGA+CGG 0.664323 7.2:+37430287 MS.gene77217:CDS
TTTAGCAAGAAATATGCTGG+AGG 0.673624 7.2:+37430349 MS.gene77217:CDS
CCAAGCTTAGGAGGAACATG+TGG 0.675374 7.2:+37431849 MS.gene77217:CDS
TTGGCAGGTTCTGGACCGTG+GGG 0.701759 7.2:+37430809 MS.gene77217:intron
AAGTTTCTGGAGACACTGCG+CGG 0.759403 7.2:-37429222 None:intergenic
TACTGAATCCACTATCAACG+AGG 0.763690 7.2:-37429298 None:intergenic
GTACTGTGTTGAACACCCAG+AGG 0.812131 7.2:+37430524 MS.gene77217:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAATATAAATA+AGG + chr7.2:37429540-37429559 MS.gene77217:intron 0.0%
!! ATTAACAAAATAAAAATTTC+AGG - chr7.2:37430432-37430451 None:intergenic 10.0%
!! TTGTTAAAATAGAAAATTAT+GGG + chr7.2:37430015-37430034 MS.gene77217:intron 10.0%
!!! TATTTTCTTAAAATTACTAT+CGG - chr7.2:37429668-37429687 None:intergenic 10.0%
!! GTTGTTAAAATAGAAAATTA+TGG + chr7.2:37430014-37430033 MS.gene77217:intron 15.0%
!! TGTTAAAATAGAAAATTATG+GGG + chr7.2:37430016-37430035 MS.gene77217:intron 15.0%
!!! TCTATAATAATTATCCATTT+TGG + chr7.2:37430790-37430809 MS.gene77217:intron 15.0%
!!! TTGAAAAAAATGCATATTTT+TGG + chr7.2:37431760-37431779 MS.gene77217:intron 15.0%
!!! TTGATTGTTTTTAGAATATT+TGG + chr7.2:37430160-37430179 MS.gene77217:intron 15.0%
!! AAAGAACAATAATGAGAATT+AGG - chr7.2:37431922-37431941 None:intergenic 20.0%
!! AAATATAAATAAGGCGTAAT+AGG + chr7.2:37429549-37429568 MS.gene77217:intron 20.0%
!! AAGAACAATAATGAGAATTA+GGG - chr7.2:37431921-37431940 None:intergenic 20.0%
!! GTAATCTTCAATCATAATAA+TGG + chr7.2:37431210-37431229 MS.gene77217:intron 20.0%
!! GTAATTATTATTGTAAGCAT+AGG + chr7.2:37431037-37431056 MS.gene77217:intron 20.0%
!! TAGACAAACATATAGTTAAT+AGG + chr7.2:37431261-37431280 MS.gene77217:intron 20.0%
!! TTATCACAATAAGACTTAAA+AGG + chr7.2:37431413-37431432 MS.gene77217:intron 20.0%
!!! TATCGATTAATTTTTTGAGA+TGG + chr7.2:37431582-37431601 MS.gene77217:intron 20.0%
!!! TTAGCTTTATCTTCATATTT+TGG - chr7.2:37431877-37431896 None:intergenic 20.0%
!!! TTATTTTGTTAATTTGCTAG+TGG + chr7.2:37430439-37430458 MS.gene77217:intron 20.0%
!!! TTCAATCATAATAATGGTTT+TGG + chr7.2:37431216-37431235 MS.gene77217:intron 20.0%
! AAATAAGTTGTATTCGATGT+AGG + chr7.2:37429934-37429953 MS.gene77217:intron 25.0%
! AAGATAAAGCTAATTGTTCT+GGG + chr7.2:37431884-37431903 MS.gene77217:CDS 25.0%
! AATAGGTATGTGATTTATGT+GGG + chr7.2:37431361-37431380 MS.gene77217:intron 25.0%
! ATTATTGTTCTTTCAATCTG+TGG + chr7.2:37431929-37431948 MS.gene77217:CDS 25.0%
! CAACTTTAAATATGAACACT+TGG - chr7.2:37430733-37430752 None:intergenic 25.0%
! GCTATATAGAATGAAATATG+AGG + chr7.2:37430054-37430073 MS.gene77217:intron 25.0%
! GTAAAAACAAATCATCAGTA+AGG + chr7.2:37431526-37431545 MS.gene77217:intron 25.0%
! TAAGACTTAAAAGGTAAATC+TGG + chr7.2:37431422-37431441 MS.gene77217:intron 25.0%
! TAATAGGTATGTGATTTATG+TGG + chr7.2:37431360-37431379 MS.gene77217:intron 25.0%
! TTAATTCACCATTGACATTT+GGG - chr7.2:37430118-37430137 None:intergenic 25.0%
! TTTAATTCACCATTGACATT+TGG - chr7.2:37430119-37430138 None:intergenic 25.0%
!! CAATTCATATATGATTTTGC+AGG + chr7.2:37431802-37431821 MS.gene77217:intron 25.0%
!! GTTGAGGTTTAAAATGTTAT+GGG + chr7.2:37430217-37430236 MS.gene77217:intron 25.0%
!! TGTTGAGGTTTAAAATGTTA+TGG + chr7.2:37430216-37430235 MS.gene77217:intron 25.0%
!! TTTTAAACCTCAACAGAAAA+AGG - chr7.2:37430211-37430230 None:intergenic 25.0%
!!! AAGAGCAGCATTTAAAATTT+TGG + chr7.2:37429978-37429997 MS.gene77217:intron 25.0%
!!! TAATAATTATCCATTTTGGC+AGG + chr7.2:37430794-37430813 MS.gene77217:intron 25.0%
!!! TAGAATATTTGGTTTTCTCT+TGG + chr7.2:37430171-37430190 MS.gene77217:intron 25.0%
!!! TGGTAATGACATTTTGTATT+CGG + chr7.2:37429436-37429455 MS.gene77217:intron 25.0%
!!! TTTTGAAATCTGTGAATGAA+TGG + chr7.2:37429495-37429514 MS.gene77217:intron 25.0%
AAGAGTCTCAATAAAGAGTT+TGG + chr7.2:37430394-37430413 MS.gene77217:CDS 30.0%
AAGTTCAATTACAATTGCGA+TGG + chr7.2:37429260-37429279 MS.gene77217:CDS 30.0%
ACATATAGTTAATAGGCAAG+AGG + chr7.2:37431268-37431287 MS.gene77217:intron 30.0%
ACTGTAGTATATTTCAGACA+TGG + chr7.2:37431610-37431629 MS.gene77217:intron 30.0%
AGAGTCTCAATAAAGAGTTT+GGG + chr7.2:37430395-37430414 MS.gene77217:CDS 30.0%
AGATTACTCAGAGTATAGAT+TGG - chr7.2:37431197-37431216 None:intergenic 30.0%
ATAGAGAAGGGAAAATGATA+AGG - chr7.2:37430639-37430658 None:intergenic 30.0%
ATGGAATGGAATGTTGTAAT+AGG + chr7.2:37431344-37431363 MS.gene77217:intron 30.0%
GAAAATGATAAGGATGTAAG+TGG - chr7.2:37430629-37430648 None:intergenic 30.0%
GAAGATAAAGCTAATTGTTC+TGG + chr7.2:37431883-37431902 MS.gene77217:CDS 30.0%
GATAACCTAAAACGAAAAAG+TGG - chr7.2:37431398-37431417 None:intergenic 30.0%
GCTCTTGAAGTTATTAGTAT+CGG - chr7.2:37429964-37429983 None:intergenic 30.0%
TAAAAGGTAAATCTGGTATG+TGG + chr7.2:37431429-37431448 MS.gene77217:intron 30.0%
TATAAGACTGTTGTGCTAAA+CGG - chr7.2:37430921-37430940 None:intergenic 30.0%
TGAGGAAGAAAGAAATCATT+TGG + chr7.2:37430072-37430091 MS.gene77217:intron 30.0%
TGATAAATGTCGTAGTTACA+TGG + chr7.2:37431325-37431344 MS.gene77217:intron 30.0%
TGTCAATGGTGAATTAAATC+TGG + chr7.2:37430121-37430140 MS.gene77217:intron 30.0%
TTGAACTTATTGTTTGACGA+AGG - chr7.2:37429248-37429267 None:intergenic 30.0%
TTTACTATCCCAAATGTCAA+TGG + chr7.2:37430107-37430126 MS.gene77217:intron 30.0%
! AACAGTCTTATAAAAGTGCA+GGG + chr7.2:37430929-37430948 MS.gene77217:intron 30.0%
! ATTTTAGATTGTAGATGCCT+AGG - chr7.2:37431152-37431171 None:intergenic 30.0%
! GGTTTAAAATGTTATGGGTT+TGG + chr7.2:37430222-37430241 MS.gene77217:intron 30.0%
! GTAATTTTCATTGTAAGCCT+AGG + chr7.2:37431132-37431151 MS.gene77217:intron 30.0%
! TATGATGGAGAATATTGAGA+AGG + chr7.2:37430599-37430618 MS.gene77217:CDS 30.0%
!! AAAAGGTACTTGAGCAAATT+TGG - chr7.2:37431491-37431510 None:intergenic 30.0%
!! GATTTTAGCAAGAAATATGC+TGG + chr7.2:37430346-37430365 MS.gene77217:CDS 30.0%
!! TTGTGAAATCTTGTTGTTCA+TGG + chr7.2:37430472-37430491 MS.gene77217:intron 30.0%
!!! TTTTGCCACTTTTTCGTTTT+AGG + chr7.2:37431390-37431409 MS.gene77217:intron 30.0%
AATCTTCCTTGATACGTTCA+AGG - chr7.2:37430330-37430349 None:intergenic 35.0%
AATGTCGTAGTTACATGGAA+TGG + chr7.2:37431330-37431349 MS.gene77217:intron 35.0%
ACAAGCATACACAGATCAAA+AGG - chr7.2:37431508-37431527 None:intergenic 35.0%
ACTATCAACGAGGTAATTGA+AGG - chr7.2:37429291-37429310 None:intergenic 35.0%
ATACGTTCAAGGAAAGCAAT+TGG - chr7.2:37430319-37430338 None:intergenic 35.0%
ATTCTACTGTACACAGATCA+AGG - chr7.2:37429417-37429436 None:intergenic 35.0%
ATTGTTCTTTCAATCTGTGG+TGG + chr7.2:37431932-37431951 MS.gene77217:CDS 35.0%
GAATCAAATTCCGTGTTTGA+TGG - chr7.2:37431659-37431678 None:intergenic 35.0%
GGGTGATAGATTGTTATAGA+TGG + chr7.2:37430949-37430968 MS.gene77217:intron 35.0%
GTACATTGACACATTGAAAC+TGG + chr7.2:37429752-37429771 MS.gene77217:intron 35.0%
TTGATCTGTGTACAGTAGAA+TGG + chr7.2:37429416-37429435 MS.gene77217:intron 35.0%
TTTAGCAAGAAATATGCTGG+AGG + chr7.2:37430349-37430368 MS.gene77217:CDS 35.0%
! AAACACAACATTGAGTTGTG+CGG - chr7.2:37430999-37431018 None:intergenic 35.0%
! AATTCCGTGTTTGATGGTAA+AGG - chr7.2:37431653-37431672 None:intergenic 35.0%
! AATTTTCCTGGCAATAGAGA+AGG - chr7.2:37430652-37430671 None:intergenic 35.0%
! ATGGTGTAGATCTAAGTTGA+AGG + chr7.2:37430491-37430510 MS.gene77217:intron 35.0%
! ATTTTCCTGGCAATAGAGAA+GGG - chr7.2:37430651-37430670 None:intergenic 35.0%
! CAACAGTCTTATAAAAGTGC+AGG + chr7.2:37430928-37430947 MS.gene77217:intron 35.0%
! GTTTCTGCAAACAATTTTCC+TGG - chr7.2:37430664-37430683 None:intergenic 35.0%
! TGGTTTTCCTTTTTCTGTTG+AGG + chr7.2:37430201-37430220 MS.gene77217:intron 35.0%
! TTCAATTACCTCGTTGATAG+TGG + chr7.2:37429290-37429309 MS.gene77217:CDS 35.0%
AATGCTATGAAGCATGTACG+CGG + chr7.2:37429716-37429735 MS.gene77217:intron 40.0%
AGAGGTCAAAGGAGTTATGA+TGG + chr7.2:37430584-37430603 MS.gene77217:CDS 40.0%
CGTTCCTTTACCATCAAACA+CGG + chr7.2:37431646-37431665 MS.gene77217:intron 40.0%
GACATTGACACTGATATGTG+TGG + chr7.2:37429639-37429658 MS.gene77217:intron 40.0%
TAAGTGCTCTCGATTACGAA+AGG - chr7.2:37431700-37431719 None:intergenic 40.0%
TACTGAATCCACTATCAACG+AGG - chr7.2:37429301-37429320 None:intergenic 40.0%
TGCTTTCCTTGAACGTATCA+AGG + chr7.2:37430321-37430340 MS.gene77217:CDS 40.0%
TGTGTCAATGTACTTGTGTC+TGG - chr7.2:37429745-37429764 None:intergenic 40.0%
TGTTGTGTCAGTTGAACATG+AGG + chr7.2:37429882-37429901 MS.gene77217:intron 40.0%
TGTTTGACGAAGGAAGTTTC+TGG - chr7.2:37429238-37429257 None:intergenic 40.0%
TTGAATGTGAGTGTGTGACA+TGG + chr7.2:37430762-37430781 MS.gene77217:intron 40.0%
! AAAGCTCAATTTTCTCCCCA+CGG - chr7.2:37430827-37430846 None:intergenic 40.0%
! AACACAACATTGAGTTGTGC+GGG - chr7.2:37430998-37431017 None:intergenic 40.0%
! ATTTTCCCTTCTCTATTGCC+AGG + chr7.2:37430643-37430662 MS.gene77217:intron 40.0%
! GGTTTTCTCTTGGTGAAGTT+TGG + chr7.2:37430181-37430200 MS.gene77217:intron 40.0%
! TTTTGCAGGCACAAGATTTC+AGG + chr7.2:37431816-37431835 MS.gene77217:intron 40.0%
!! AAAGCTTGCTAATCTCCTCT+GGG - chr7.2:37430542-37430561 None:intergenic 40.0%
!! TTATCCATTTTGGCAGGTTC+TGG + chr7.2:37430800-37430819 MS.gene77217:intron 40.0%
AACATGGAACCAAGCTTAGG+AGG + chr7.2:37431840-37431859 MS.gene77217:CDS 45.0%
ATTCTGATCGAAGACGTGTC+TGG - chr7.2:37429839-37429858 None:intergenic 45.0%
CACGTCTTCGATCAGAATGT+CGG + chr7.2:37429841-37429860 MS.gene77217:intron 45.0%
GCACAAGATTTCAGGCAACA+TGG + chr7.2:37431824-37431843 MS.gene77217:CDS 45.0%
! ACGCCTTCAATCTGAAGCAT+CGG + chr7.2:37429906-37429925 MS.gene77217:intron 45.0%
!! GAAAGCTTGCTAATCTCCTC+TGG - chr7.2:37430543-37430562 None:intergenic 45.0%
!! GCTTTCTAAAGTGCAAGCTC+AGG + chr7.2:37430557-37430576 MS.gene77217:CDS 45.0%
ATCTACAGCTTCGTTGCTCG+TGG + chr7.2:37429146-37429165 MS.gene77217:CDS 50.0%
CCAAGCTTAGGAGGAACATG+TGG + chr7.2:37431849-37431868 MS.gene77217:CDS 50.0%
CCACATGTTCCTCCTAAGCT+TGG - chr7.2:37431852-37431871 None:intergenic 50.0%
CCACCGATGCTTCAGATTGA+AGG - chr7.2:37429912-37429931 None:intergenic 50.0%
CGATTACGAAAGGTCACTGC+AGG - chr7.2:37431690-37431709 None:intergenic 50.0%
GCTGAATACACCGAGTTCAC+CGG + chr7.2:37429182-37429201 MS.gene77217:CDS 50.0%
GGCAACATGGAACCAAGCTT+AGG + chr7.2:37431837-37431856 MS.gene77217:CDS 50.0%
GGTGAAGTTACCGGTGAACT+CGG - chr7.2:37429195-37429214 None:intergenic 50.0%
GTACTGTGTTGAACACCCAG+AGG + chr7.2:37430524-37430543 MS.gene77217:CDS 50.0%
! AAGTTTCTGGAGACACTGCG+CGG - chr7.2:37429225-37429244 None:intergenic 50.0%
! GTTGTTGCTGTTGAGTCTGC+TGG + chr7.2:37430283-37430302 MS.gene77217:CDS 50.0%
! TTGCTGTTGAGTCTGCTGGA+CGG + chr7.2:37430287-37430306 MS.gene77217:CDS 50.0%
!! CCTTCAATCTGAAGCATCGG+TGG + chr7.2:37429909-37429928 MS.gene77217:intron 50.0%
ACCAACAGACCTGAGAGCGA+AGG - chr7.2:37430869-37430888 None:intergenic 55.0%
ACCTTCGCTCTCAGGTCTGT+TGG + chr7.2:37430865-37430884 MS.gene77217:intron 55.0%
AGTGCAAGCTCAGGTCTCAG+AGG + chr7.2:37430566-37430585 MS.gene77217:CDS 55.0%
AGTTGTGCGGGAGAGAACAG+GGG - chr7.2:37430986-37431005 None:intergenic 55.0%
CGGTCCAGAACCTGCCAAAA+TGG - chr7.2:37430807-37430826 None:intergenic 55.0%
GACAGAGAACCTTCGCTCTC+AGG + chr7.2:37430857-37430876 MS.gene77217:CDS 55.0%
GAGTTGTGCGGGAGAGAACA+GGG - chr7.2:37430987-37431006 None:intergenic 55.0%
GCTCAGGTCTCAGAGGTCAA+AGG + chr7.2:37430573-37430592 MS.gene77217:CDS 55.0%
GGCAATGGCGGTGAAGTTAC+CGG - chr7.2:37429204-37429223 None:intergenic 55.0%
TGAGTTGTGCGGGAGAGAAC+AGG - chr7.2:37430988-37431007 None:intergenic 55.0%
!! TTTGGCAGGTTCTGGACCGT+GGG + chr7.2:37430808-37430827 MS.gene77217:intron 55.0%
!!! TTTTGGCAGGTTCTGGACCG+TGG + chr7.2:37430807-37430826 MS.gene77217:intron 55.0%
!! TTGGCAGGTTCTGGACCGTG+GGG + chr7.2:37430809-37430828 MS.gene77217:intron 60.0%
CTGGAGACACTGCGCGGCAA+TGG - chr7.2:37429219-37429238 None:intergenic 65.0%
GAGACACTGCGCGGCAATGG+CGG - chr7.2:37429216-37429235 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 37429128 37431973 37429128 ID=MS.gene77217
chr7.2 mRNA 37429128 37431973 37429128 ID=MS.gene77217.t1;Parent=MS.gene77217
chr7.2 exon 37429128 37429317 37429128 ID=MS.gene77217.t1.exon1;Parent=MS.gene77217.t1
chr7.2 CDS 37429128 37429317 37429128 ID=cds.MS.gene77217.t1;Parent=MS.gene77217.t1
chr7.2 exon 37430275 37430416 37430275 ID=MS.gene77217.t1.exon2;Parent=MS.gene77217.t1
chr7.2 CDS 37430275 37430416 37430275 ID=cds.MS.gene77217.t1;Parent=MS.gene77217.t1
chr7.2 exon 37430500 37430620 37430500 ID=MS.gene77217.t1.exon3;Parent=MS.gene77217.t1
chr7.2 CDS 37430500 37430620 37430500 ID=cds.MS.gene77217.t1;Parent=MS.gene77217.t1
chr7.2 exon 37430816 37430878 37430816 ID=MS.gene77217.t1.exon4;Parent=MS.gene77217.t1
chr7.2 CDS 37430816 37430878 37430816 ID=cds.MS.gene77217.t1;Parent=MS.gene77217.t1
chr7.2 exon 37431824 37431973 37431824 ID=MS.gene77217.t1.exon5;Parent=MS.gene77217.t1
chr7.2 CDS 37431824 37431973 37431824 ID=cds.MS.gene77217.t1;Parent=MS.gene77217.t1
Gene Sequence

>MS.gene77217

ATGGGACAACAATCGTTGATCTACAGCTTCGTTGCTCGTGGCACTGTCATTCTCGCTGAATACACCGAGTTCACCGGTAACTTCACCGCCATTGCCGCGCAGTGTCTCCAGAAACTTCCTTCGTCAAACAATAAGTTCAATTACAATTGCGATGGTCATACCTTCAATTACCTCGTTGATAGTGGATTCAGTAACTTGCTAAACTCTTCTTATATTGATATGTTTTCGTTTTGTGATTTGTTGTTTTGTTTCTATTTTTAGATTTGAATGTGTGTTAGTTGTTAATCCTTGATCTGTGTACAGTAGAATGGTAATGACATTTTGTATTCGGTGTGCATTGCTTGATTTGATTTGATTTGATTAACATTTTTGAAATCTGTGAATGAATGGTTTTGTTGTTTGAATTTATAAAAAAAAATAAAAATATAAATAAGGCGTAATAGGAAGCAATAAATTTGTGTGACTGATAATTGACTTGATTACATTGTCGATATATACATCACTGAGACACGACATTGACACTGATATGTGTGGACACCGATAGTAATTTTAAGAAAATAAAAGTGAGTGAGTGATTGAACATAACTAAATGCTATGAAGCATGTACGCGGATACCAGACACAAGTACATTGACACATTGAAACTGGTAGTAATTTAACAAAATGTCACAACTAAATGTAATCACATGTGTAAGTGTGAAGTCAAACACCAGACACGTCTTCGATCAGAATGTCGGTGCTATAAATACTACTTGTGTTGTGTCAGTTGAACATGAGGCACGCCTTCAATCTGAAGCATCGGTGGCTAAATAAGTTGTATTCGATGTAGGTGCTCCGATACTAATAACTTCAAGAGCAGCATTTAAAATTTTGGTTGTAAATTATTTGTTGTTAAAATAGAAAATTATGGGGAAGTTTCGTTTTATAGCTATATAGAATGAAATATGAGGAAGAAAGAAATCATTTGGTTGTTCAGAAAATTTACTATCCCAAATGTCAATGGTGAATTAAATCTGGTTTTATTGTTAATAACTTGATTGTTTTTAGAATATTTGGTTTTCTCTTGGTGAAGTTTGGTTTTCCTTTTTCTGTTGAGGTTTAAAATGTTATGGGTTTGGAACTGACTTGAAATCTGCTGAATGTTCTAGCTTACTGTGTTGTTGCTGTTGAGTCTGCTGGACGGCAAATTCCAATTGCTTTCCTTGAACGTATCAAGGAAGATTTTAGCAAGAAATATGCTGGAGGAAAAGCTGAAAATGCAGCTGCAAAGAGTCTCAATAAAGAGTTTGGGTATTTGCATATCCTGAAATTTTTATTTTGTTAATTTGCTAGTGGCATACGTTTATTGTGAAATCTTGTTGTTCATGGTGTAGATCTAAGTTGAAGGAGCAGATGCAGTACTGTGTTGAACACCCAGAGGAGATTAGCAAGCTTTCTAAAGTGCAAGCTCAGGTCTCAGAGGTCAAAGGAGTTATGATGGAGAATATTGAGAAGGTATACCACTTACATCCTTATCATTTTCCCTTCTCTATTGCCAGGAAAATTGTTTGCAGAAACTAAACTTTCTCGTGATTATAATTGTTGTTGTTTCTGTTATTTTTTACCAAGTGTTCATATTTAAAGTTGTTTAATCTATTGAATGTGAGTGTGTGACATGGAATTCTCTATAATAATTATCCATTTTGGCAGGTTCTGGACCGTGGGGAGAAAATTGAGCTTTTAGTAGACAAGACAGAGAACCTTCGCTCTCAGGTCTGTTGGTTTCTATAATTGCATTTTTTATATTAATAACCGTTTAGCACAACAGTCTTATAAAAGTGCAGGGTGATAGATTGTTATAGATGGTATAAAATTGTCCCCTGTTCTCTCCCGCACAACTCAATGTTGTGTTTTTAGTTATCAATATTGAAGTAATTATTATTGTAAGCATAGGCATCTGCAATCTGAAATTTGAAAACTAAATATACAACTCAATGTTCAAGTGTTTTTAGTAGTCAATATTGAAGTAATTTTCATTGTAAGCCTAGGCATCTACAATCTAAAATTTGAATACTAAATTACTAATATCCAATCTATACTCTGAGTAATCTTCAATCATAATAATGGTTTTGGACAGATGCAACAAAGACTCATATAGACAAACATATAGTTAATAGGCAAGAGGATTTTCATGAGCAATTAGCAAACATCATATCTAATGATAAATGTCGTAGTTACATGGAATGGAATGTTGTAATAGGTATGTGATTTATGTGGGTTTGCATTTTGCCACTTTTTCGTTTTAGGTTATCACAATAAGACTTAAAAGGTAAATCTGGTATGTGGTACACAATGTTGTTGAGTGCTAGTAACATTAGTAAACCAAATTTGCTCAAGTACCTTTTGATCTGTGTATGCTTGTAAAAACAAATCATCAGTAAGGCAAGCATGTCTATATCTATTACACGATTCATAGTATCGATTAATTTTTTGAGATGGTGTAAACTGTAGTATATTTCAGACATGGTATTATTTTTCTTCGTTCCTTTACCATCAAACACGGAATTTGATTCACGTTATACCTGCAGTGACCTTTCGTAATCGAGAGCACTTAAATCTTGAAAGATCGATGTCTCTGTTTTATTTTTAATTTTTTGAAAAAAATGCATATTTTTGGCTATCATTTTTGTGACTCTCAATTCATATATGATTTTGCAGGCACAAGATTTCAGGCAACATGGAACCAAGCTTAGGAGGAACATGTGGTTCCAAAATATGAAGATAAAGCTAATTGTTCTGGGTATCATAATTGCCCTAATTCTCATTATTGTTCTTTCAATCTGTGGTGGCTTCAACTGTTCTAAATGA
Protein sequence

>MS.gene77217.t1

MGQQSLIYSFVARGTVILAEYTEFTGNFTAIAAQCLQKLPSSNNKFNYNCDGHTFNYLVDSGFTYCVVAVESAGRQIPIAFLERIKEDFSKKYAGGKAENAAAKSLNKEFGSKLKEQMQYCVEHPEEISKLSKVQAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQHGTKLRRNMWFQNMKIKLIVLGIIIALILIIVLSICGGFNCSK