Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66057.t1 | XP_003622969.1 | 98.6 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 2.60E-114 | 421.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66057.t1 | O48850 | 82.3 | 220 | 39 | 0 | 1 | 220 | 66 | 285 | 7.7e-99 | 361.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66057.t1 | G7L2A6 | 98.6 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.9e-114 | 421.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66057.t1 | MTR_7g058900 | 98.643 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.02e-163 | 451 |
| MS.gene66057.t1 | MTR_1g047720 | 80.822 | 219 | 42 | 0 | 1 | 219 | 1 | 219 | 3.39e-139 | 389 |
| MS.gene66057.t1 | MTR_4g022570 | 84.475 | 219 | 34 | 0 | 1 | 219 | 1 | 219 | 1.50e-130 | 367 |
| MS.gene66057.t1 | MTR_2g436870 | 70.455 | 220 | 65 | 0 | 1 | 220 | 1 | 220 | 1.20e-120 | 342 |
| MS.gene66057.t1 | MTR_4g083490 | 79.275 | 193 | 40 | 0 | 3 | 195 | 5 | 197 | 4.85e-118 | 335 |
| MS.gene66057.t1 | MTR_2g028790 | 75.648 | 193 | 47 | 0 | 3 | 195 | 7 | 199 | 2.46e-113 | 323 |
| MS.gene66057.t1 | MTR_7g058640 | 71.795 | 195 | 55 | 0 | 1 | 195 | 1 | 195 | 5.61e-105 | 301 |
| MS.gene66057.t1 | MTR_1g111890 | 55.042 | 238 | 88 | 1 | 1 | 219 | 1 | 238 | 6.01e-98 | 285 |
| MS.gene66057.t1 | MTR_7g058640 | 71.512 | 172 | 49 | 0 | 1 | 172 | 1 | 172 | 1.03e-91 | 267 |
| MS.gene66057.t1 | MTR_1g047710 | 80.645 | 124 | 24 | 0 | 64 | 187 | 12 | 135 | 2.60e-72 | 216 |
| MS.gene66057.t1 | MTR_4g022470 | 82.407 | 108 | 19 | 0 | 64 | 171 | 10 | 117 | 3.90e-61 | 187 |
| MS.gene66057.t1 | MTR_7g058640 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 9.66e-58 | 179 |
| MS.gene66057.t1 | MTR_4g052550 | 37.089 | 213 | 131 | 3 | 5 | 216 | 2 | 212 | 2.66e-48 | 158 |
| MS.gene66057.t1 | MTR_5g089370 | 37.736 | 212 | 129 | 3 | 6 | 216 | 3 | 212 | 3.59e-47 | 155 |
| MS.gene66057.t1 | MTR_4g115390 | 32.870 | 216 | 138 | 3 | 6 | 216 | 3 | 216 | 1.69e-41 | 140 |
| MS.gene66057.t1 | MTR_4g022550 | 85.484 | 62 | 9 | 0 | 158 | 219 | 10 | 71 | 1.89e-20 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66057.t1 | AT1G04760 | 83.636 | 220 | 36 | 0 | 1 | 220 | 1 | 220 | 7.07e-135 | 377 |
| MS.gene66057.t1 | AT1G04760 | 83.636 | 220 | 36 | 0 | 1 | 220 | 1 | 220 | 7.07e-135 | 377 |
| MS.gene66057.t1 | AT2G32670 | 84.545 | 220 | 34 | 0 | 1 | 220 | 66 | 285 | 9.38e-131 | 370 |
| MS.gene66057.t1 | AT2G33120 | 85.068 | 221 | 33 | 0 | 1 | 221 | 1 | 221 | 1.84e-130 | 367 |
| MS.gene66057.t1 | AT1G04750 | 83.562 | 219 | 36 | 0 | 1 | 219 | 1 | 219 | 1.10e-127 | 359 |
| MS.gene66057.t1 | AT2G33120 | 81.659 | 229 | 34 | 1 | 1 | 221 | 1 | 229 | 9.27e-127 | 357 |
| MS.gene66057.t1 | AT3G54300 | 56.067 | 239 | 86 | 1 | 1 | 220 | 1 | 239 | 1.99e-101 | 294 |
| MS.gene66057.t1 | AT3G54300 | 56.067 | 239 | 86 | 1 | 1 | 220 | 1 | 239 | 1.99e-101 | 294 |
| MS.gene66057.t1 | AT3G54300 | 56.067 | 239 | 86 | 1 | 1 | 220 | 1 | 239 | 1.99e-101 | 294 |
| MS.gene66057.t1 | AT2G33110 | 69.231 | 221 | 64 | 1 | 1 | 221 | 1 | 217 | 1.95e-98 | 285 |
| MS.gene66057.t1 | AT4G15780 | 69.274 | 179 | 54 | 1 | 1 | 178 | 1 | 179 | 8.51e-91 | 265 |
| MS.gene66057.t1 | AT2G33110 | 72.222 | 162 | 45 | 0 | 1 | 162 | 1 | 162 | 9.65e-86 | 252 |
| MS.gene66057.t1 | AT1G04750 | 81.560 | 141 | 26 | 0 | 79 | 219 | 1 | 141 | 1.11e-69 | 209 |
| MS.gene66057.t1 | AT1G04750 | 81.560 | 141 | 26 | 0 | 79 | 219 | 1 | 141 | 1.11e-69 | 209 |
| MS.gene66057.t1 | AT1G04750 | 81.560 | 141 | 26 | 0 | 79 | 219 | 1 | 141 | 1.11e-69 | 209 |
| MS.gene66057.t1 | AT5G22360 | 38.785 | 214 | 127 | 3 | 5 | 216 | 2 | 213 | 5.44e-54 | 172 |
| MS.gene66057.t1 | AT5G11150 | 39.535 | 215 | 124 | 5 | 5 | 216 | 2 | 213 | 2.29e-51 | 166 |
| MS.gene66057.t1 | AT5G11150 | 39.535 | 215 | 124 | 5 | 5 | 216 | 2 | 213 | 3.26e-51 | 166 |
| MS.gene66057.t1 | AT4G32150 | 38.028 | 213 | 129 | 3 | 5 | 216 | 2 | 212 | 4.96e-48 | 157 |
| MS.gene66057.t1 | AT2G25340 | 37.368 | 190 | 116 | 3 | 5 | 193 | 2 | 189 | 1.27e-41 | 141 |
| MS.gene66057.t1 | AT2G33120 | 84.375 | 96 | 15 | 0 | 126 | 221 | 44 | 139 | 3.19e-38 | 129 |
| MS.gene66057.t1 | AT3G24890 | 56.383 | 94 | 35 | 2 | 113 | 200 | 14 | 107 | 2.54e-26 | 99.0 |
| MS.gene66057.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.56e-15 | 69.3 |
| MS.gene66057.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.56e-15 | 69.3 |
| MS.gene66057.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.56e-15 | 69.3 |
| MS.gene66057.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.56e-15 | 69.3 |
Find 44 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGCTTTATCTTCATATTT+TGG | 0.145204 | 7.3:+45897404 | None:intergenic |
| AAAGAACAATAATGAGAATT+AGG | 0.159352 | 7.3:+45897359 | None:intergenic |
| TGTTCGACGAAGGAAGTTTC+TGG | 0.225140 | 7.3:+45899974 | None:intergenic |
| GAAGATAAAGCTAATTGTTC+TGG | 0.270272 | 7.3:-45897395 | MS.gene66057:CDS |
| AAGAGTCTCAATAAAGAGTT+TGG | 0.296926 | 7.3:-45898862 | MS.gene66057:CDS |
| AAGAACAATAATGAGAATTA+GGG | 0.385939 | 7.3:+45897360 | None:intergenic |
| GTTGTTGCTGTTGAGTCTGC+TGG | 0.391522 | 7.3:-45898973 | MS.gene66057:CDS |
| GGCAATGGCGGTGAAGTTAC+CGG | 0.406184 | 7.3:+45900008 | None:intergenic |
| AATCTTCCTTGATACGTTCA+AGG | 0.408743 | 7.3:+45898929 | None:intergenic |
| ATACGTTCAAGGAAAGCAAT+TGG | 0.426895 | 7.3:+45898940 | None:intergenic |
| GACAGAGAACCTTCGCTCTC+AGG | 0.438230 | 7.3:-45898356 | MS.gene66057:intron |
| GAAAGCTTGCTAATCTCCTC+TGG | 0.440504 | 7.3:+45898715 | None:intergenic |
| CCACATGTTTCTCCTTAGCT+TGG | 0.452426 | 7.3:+45897429 | None:intergenic |
| TGCTTTCCTTGAACGTATCA+AGG | 0.453306 | 7.3:-45898935 | MS.gene66057:CDS |
| AAGATAAAGCTAATTGTTCT+GGG | 0.458032 | 7.3:-45897394 | MS.gene66057:CDS |
| ATTATTGTTCTTTCAATCTG+TGG | 0.460900 | 7.3:-45897349 | MS.gene66057:CDS |
| CTGGAGACACTGCGCGGCAA+TGG | 0.468297 | 7.3:+45899993 | None:intergenic |
| AAACTCTTTATTGAGACTCT+TGG | 0.500006 | 7.3:+45898864 | None:intergenic |
| TTCAATTACCTCGTCGATAG+CGG | 0.505293 | 7.3:-45899919 | MS.gene66057:CDS |
| ATGATGTAGATCTAAGTTGA+AGG | 0.511207 | 7.3:-45898764 | MS.gene66057:intron |
| ATTGTTCTTTCAATCTGTGG+TGG | 0.517961 | 7.3:-45897346 | MS.gene66057:CDS |
| AGAGTCTCAATAAAGAGTTT+GGG | 0.520977 | 7.3:-45898861 | MS.gene66057:intron |
| TTTGGCAGGTTCTGGACCGT+GGG | 0.521838 | 7.3:-45898405 | MS.gene66057:intron |
| GCTTTCTAAAGTGCAAGCTC+AGG | 0.524990 | 7.3:-45898698 | MS.gene66057:CDS |
| AGAGGTCAAAGGAGTTATGA+TGG | 0.525035 | 7.3:-45898671 | MS.gene66057:CDS |
| GCTATCGACGAGGTAATTGA+AGG | 0.565819 | 7.3:+45899921 | None:intergenic |
| GCTCAGGTCTCAGAGGTCAA+AGG | 0.570543 | 7.3:-45898682 | MS.gene66057:CDS |
| GCTGAATACACTGAGTTCAC+CGG | 0.580372 | 7.3:-45900027 | MS.gene66057:CDS |
| GCACAAGATTTCAGGCAACA+TGG | 0.581723 | 7.3:-45897454 | MS.gene66057:CDS |
| GGCAACATGGAACCAAGCTA+AGG | 0.582200 | 7.3:-45897441 | MS.gene66057:CDS |
| GAGACACTGCGCGGCAATGG+CGG | 0.591240 | 7.3:+45899996 | None:intergenic |
| TATGATGGAGAATATTGAGA+AGG | 0.608070 | 7.3:-45898656 | MS.gene66057:intron |
| ATCTACAGCTTCGTTGCTCG+CGG | 0.618567 | 7.3:-45900063 | MS.gene66057:CDS |
| AAGTTCAATTACAACTGCGA+TGG | 0.621706 | 7.3:-45899949 | MS.gene66057:CDS |
| TTGAACTTATTGTTCGACGA+AGG | 0.638914 | 7.3:+45899964 | None:intergenic |
| TACTGAATCCGCTATCGACG+AGG | 0.639212 | 7.3:+45899911 | None:intergenic |
| AGTGCAAGCTCAGGTCTCAG+AGG | 0.652865 | 7.3:-45898689 | MS.gene66057:CDS |
| ACCAACAGACCTGAGAGCGA+AGG | 0.661970 | 7.3:+45898347 | None:intergenic |
| TTGCTGTTGAGTCTGCTGGA+CGG | 0.664323 | 7.3:-45898969 | MS.gene66057:CDS |
| TTTAGCAAGAAATATGCTGG+AGG | 0.673624 | 7.3:-45898907 | MS.gene66057:CDS |
| CCAAGCTAAGGAGAAACATG+TGG | 0.701408 | 7.3:-45897429 | MS.gene66057:CDS |
| TTGGCAGGTTCTGGACCGTG+GGG | 0.702676 | 7.3:-45898404 | MS.gene66057:intron |
| GTACTGTGTTGAACATCCAG+AGG | 0.742495 | 7.3:-45898731 | MS.gene66057:CDS |
| AAGTTTCTGGAGACACTGCG+CGG | 0.759403 | 7.3:+45899987 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAACAAAATAAAAATTTC+AGG | + | chr7.3:45898584-45898603 | None:intergenic | 10.0% |
| !!! | AAAATTATTTGTTGATAAAA+TGG | - | chr7.3:45898162-45898181 | MS.gene66057:intron | 10.0% |
| !!! | TCTATAATATTTATCTATTT+TGG | - | chr7.3:45898985-45899004 | MS.gene66057:intron | 10.0% |
| !! | ATAATATAAATAAGCGTAAT+AGG | - | chr7.3:45897729-45897748 | MS.gene66057:intron | 15.0% |
| !! | TTGATAAAATGGAAAATTAA+GGG | - | chr7.3:45898173-45898192 | MS.gene66057:intron | 15.0% |
| !!! | ACATTTAATTATGACATTTT+TGG | + | chr7.3:45897951-45897970 | None:intergenic | 15.0% |
| !!! | TTGAAAAAAATCCATATTTT+TGG | - | chr7.3:45899890-45899909 | MS.gene66057:intron | 15.0% |
| !! | AAAAATGATAGCCAAAAATA+TGG | + | chr7.3:45899904-45899923 | None:intergenic | 20.0% |
| !! | AAAGAACAATAATGAGAATT+AGG | + | chr7.3:45900052-45900071 | None:intergenic | 20.0% |
| !! | AAATAAATTGTATTCGATGT+AGG | - | chr7.3:45898098-45898117 | MS.gene66057:intron | 20.0% |
| !! | AAGAACAATAATGAGAATTA+GGG | + | chr7.3:45900051-45900070 | None:intergenic | 20.0% |
| !! | ATATATAGTTAATAGGTAAG+AGG | - | chr7.3:45899436-45899455 | MS.gene66057:intron | 20.0% |
| !! | CTATATAGAATGAAAACTAA+GGG | - | chr7.3:45898213-45898232 | MS.gene66057:intron | 20.0% |
| !! | TAGACACATATATAGTTAAT+AGG | - | chr7.3:45899429-45899448 | MS.gene66057:intron | 20.0% |
| !! | TGATAAAATGGAAAATTAAG+GGG | - | chr7.3:45898174-45898193 | MS.gene66057:intron | 20.0% |
| !! | TTATCACAATAAGACTTAAA+AGG | - | chr7.3:45899581-45899600 | MS.gene66057:intron | 20.0% |
| !!! | GTTGATAAAATGGAAAATTA+AGG | - | chr7.3:45898172-45898191 | MS.gene66057:intron | 20.0% |
| !!! | TAATATTTATCTATTTTGGC+AGG | - | chr7.3:45898989-45899008 | MS.gene66057:intron | 20.0% |
| !!! | TAGAATATATTGTTTTCTCT+TGG | - | chr7.3:45898323-45898342 | MS.gene66057:intron | 20.0% |
| !!! | TTAGCTTTATCTTCATATTT+TGG | + | chr7.3:45900007-45900026 | None:intergenic | 20.0% |
| !!! | TTATTTTGTTAATTTGCTAG+TGG | - | chr7.3:45898591-45898610 | MS.gene66057:intron | 20.0% |
| !!! | TTTTACTATAGCAATGTAAA+TGG | - | chr7.3:45898259-45898278 | MS.gene66057:intron | 20.0% |
| ! | AAGATAAAGCTAATTGTTCT+GGG | - | chr7.3:45900014-45900033 | MS.gene66057:CDS | 25.0% |
| ! | AATGTCATAGTTACATTGAA+TGG | - | chr7.3:45899498-45899517 | MS.gene66057:intron | 25.0% |
| ! | ATTATTGTTCTTTCAATCTG+TGG | - | chr7.3:45900059-45900078 | MS.gene66057:CDS | 25.0% |
| ! | ATTGAATGGAATGTTGTAAT+AGG | - | chr7.3:45899512-45899531 | MS.gene66057:intron | 25.0% |
| ! | CTAAAAACAAATCATCAGTA+AGG | - | chr7.3:45899693-45899712 | MS.gene66057:intron | 25.0% |
| ! | GCTATATAGAATGAAAACTA+AGG | - | chr7.3:45898212-45898231 | MS.gene66057:intron | 25.0% |
| ! | GTAATCTTCAATCATAATCA+TGG | - | chr7.3:45899378-45899397 | MS.gene66057:intron | 25.0% |
| ! | GTAATTATCATTGTAAGCAT+AGG | - | chr7.3:45899310-45899329 | MS.gene66057:intron | 25.0% |
| ! | GTGTAAACTGTAGTATATTT+CGG | - | chr7.3:45899734-45899753 | MS.gene66057:intron | 25.0% |
| ! | TAAGACTTAAAAGGTAAATC+TGG | - | chr7.3:45899590-45899609 | MS.gene66057:intron | 25.0% |
| ! | TGTAAATGGTGAATTAAATC+TGG | - | chr7.3:45898273-45898292 | MS.gene66057:intron | 25.0% |
| !! | CAATTCATATATGATTTTGC+AGG | - | chr7.3:45899932-45899951 | MS.gene66057:CDS | 25.0% |
| !! | TTCAATCATAATCATGGTTT+TGG | - | chr7.3:45899384-45899403 | MS.gene66057:intron | 25.0% |
| !!! | ACATTTTTGAAATCTGTGAA+TGG | - | chr7.3:45897681-45897700 | MS.gene66057:intron | 25.0% |
| !!! | AGTGTTTTTAGTAGTCAATA+TGG | - | chr7.3:45899285-45899304 | MS.gene66057:intron | 25.0% |
| !!! | CTACCTATTTTTATTTTCCT+GGG | + | chr7.3:45898816-45898835 | None:intergenic | 25.0% |
| !!! | TCTACCTATTTTTATTTTCC+TGG | + | chr7.3:45898817-45898836 | None:intergenic | 25.0% |
| !!! | TGGTAATGACATTTTGTATT+CGG | - | chr7.3:45897631-45897650 | MS.gene66057:intron | 25.0% |
| AAAACATCTTAAACCTCAAC+AGG | + | chr7.3:45898369-45898388 | None:intergenic | 30.0% | |
| AAACTCTTTATTGAGACTCT+TGG | + | chr7.3:45898547-45898566 | None:intergenic | 30.0% | |
| AAGAGTCTCAATAAAGAGTT+TGG | - | chr7.3:45898546-45898565 | MS.gene66057:intron | 30.0% | |
| AATAGGTATGTGATTCATGT+GGG | - | chr7.3:45899529-45899548 | MS.gene66057:intron | 30.0% | |
| AGAGTCTCAATAAAGAGTTT+GGG | - | chr7.3:45898547-45898566 | MS.gene66057:intron | 30.0% | |
| AGATTACTCAGAGTATACAT+TGG | + | chr7.3:45899365-45899384 | None:intergenic | 30.0% | |
| GAAAATGTTAAGGATGTAAG+TGG | + | chr7.3:45898782-45898801 | None:intergenic | 30.0% | |
| GAAGATAAAGCTAATTGTTC+TGG | - | chr7.3:45900013-45900032 | MS.gene66057:CDS | 30.0% | |
| GATAACCTAAAACGAAAAAG+TGG | + | chr7.3:45899566-45899585 | None:intergenic | 30.0% | |
| GTTCCCAGGAAAATAAAAAT+AGG | - | chr7.3:45898810-45898829 | MS.gene66057:intron | 30.0% | |
| TAAAAGGTAAATCTGGTATG+AGG | - | chr7.3:45899597-45899616 | MS.gene66057:intron | 30.0% | |
| TAATAGGTATGTGATTCATG+TGG | - | chr7.3:45899528-45899547 | MS.gene66057:intron | 30.0% | |
| TGTAATCATATGTGTAAGTG+TGG | - | chr7.3:45897968-45897987 | MS.gene66057:intron | 30.0% | |
| ! | AGCAGTCTTATAAAAGTGTA+GGG | - | chr7.3:45899124-45899143 | MS.gene66057:intron | 30.0% |
| ! | ATGATGTAGATCTAAGTTGA+AGG | - | chr7.3:45898644-45898663 | MS.gene66057:intron | 30.0% |
| ! | TACATTATGTCTTTTTGCTG+TGG | - | chr7.3:45898837-45898856 | MS.gene66057:intron | 30.0% |
| ! | TATGATGGAGAATATTGAGA+AGG | - | chr7.3:45898752-45898771 | MS.gene66057:CDS | 30.0% |
| !! | ACATTATGTCTTTTTGCTGT+GGG | - | chr7.3:45898838-45898857 | MS.gene66057:intron | 30.0% |
| !! | GATTTTAGCAAGAAATATGC+TGG | - | chr7.3:45898498-45898517 | MS.gene66057:intron | 30.0% |
| !! | GGACATGGTATTATTTTTCT+TGG | - | chr7.3:45899755-45899774 | MS.gene66057:intron | 30.0% |
| !!! | TTTTGCCACTTTTTCGTTTT+AGG | - | chr7.3:45899558-45899577 | MS.gene66057:intron | 30.0% |
| AAGTTCAATTACAACTGCGA+TGG | - | chr7.3:45897459-45897478 | MS.gene66057:intron | 35.0% | |
| AATCTTCCTTGATACGTTCA+AGG | + | chr7.3:45898482-45898501 | None:intergenic | 35.0% | |
| ACAGAGAAGGGAAAATGTTA+AGG | + | chr7.3:45898792-45898811 | None:intergenic | 35.0% | |
| ACTGTAGTATATTTCGGACA+TGG | - | chr7.3:45899740-45899759 | MS.gene66057:intron | 35.0% | |
| ATACGTTCAAGGAAAGCAAT+TGG | + | chr7.3:45898471-45898490 | None:intergenic | 35.0% | |
| ATTCTACTGTTCACAGATCA+AGG | + | chr7.3:45897612-45897631 | None:intergenic | 35.0% | |
| ATTGTTCTTTCAATCTGTGG+TGG | - | chr7.3:45900062-45900081 | MS.gene66057:CDS | 35.0% | |
| CAACTTGAAACATGAACACT+TGG | + | chr7.3:45898928-45898947 | None:intergenic | 35.0% | |
| GGGTGATAGATTGTTATAGA+TGG | - | chr7.3:45899144-45899163 | MS.gene66057:intron | 35.0% | |
| TATAAGACTGCTGTGCTAAA+AGG | + | chr7.3:45899116-45899135 | None:intergenic | 35.0% | |
| TCTTAAACCTCAACAGGAAA+AGG | + | chr7.3:45898363-45898382 | None:intergenic | 35.0% | |
| TTGAACTTATTGTTCGACGA+AGG | + | chr7.3:45897447-45897466 | None:intergenic | 35.0% | |
| TTGATCTGTGAACAGTAGAA+TGG | - | chr7.3:45897611-45897630 | MS.gene66057:intron | 35.0% | |
| TTTAGCAAGAAATATGCTGG+AGG | - | chr7.3:45898501-45898520 | MS.gene66057:intron | 35.0% | |
| ! | AAACACAACATTGAGTTGTG+TGG | + | chr7.3:45899194-45899213 | None:intergenic | 35.0% |
| ! | AACACAACATTGAGTTGTGT+GGG | + | chr7.3:45899193-45899212 | None:intergenic | 35.0% |
| ! | AGAAGCATACACAGATCAAA+AGG | + | chr7.3:45899675-45899694 | None:intergenic | 35.0% |
| ! | CAGCAGTCTTATAAAAGTGT+AGG | - | chr7.3:45899123-45899142 | MS.gene66057:intron | 35.0% |
| ! | TGTTTTCTCTTGGTGAAGTT+TGG | - | chr7.3:45898333-45898352 | MS.gene66057:intron | 35.0% |
| !!! | TTATCTATTTTGGCAGGTTC+TGG | - | chr7.3:45898995-45899014 | MS.gene66057:intron | 35.0% |
| ACGTCTTCGATCAGAAATGT+CGG | - | chr7.3:45898006-45898025 | MS.gene66057:intron | 40.0% | |
| AGAGGTCAAAGGAGTTATGA+TGG | - | chr7.3:45898737-45898756 | MS.gene66057:CDS | 40.0% | |
| CATGCTATGAAGCACATAAG+CGG | - | chr7.3:45897893-45897912 | MS.gene66057:intron | 40.0% | |
| GAATCAAATTCCGCGTTTGA+AGG | + | chr7.3:45899789-45899808 | None:intergenic | 40.0% | |
| GGTTTCTTTACCTTCAAACG+CGG | - | chr7.3:45899776-45899795 | MS.gene66057:intron | 40.0% | |
| TAAGTGCTCTCGATTACGAA+AGG | + | chr7.3:45899830-45899849 | None:intergenic | 40.0% | |
| TGCTTTCCTTGAACGTATCA+AGG | - | chr7.3:45898473-45898492 | MS.gene66057:intron | 40.0% | |
| TGTGTCAATGTACTTGTGTC+TGG | + | chr7.3:45897922-45897941 | None:intergenic | 40.0% | |
| TTCAATTACCTCGTCGATAG+CGG | - | chr7.3:45897489-45897508 | MS.gene66057:intron | 40.0% | |
| TTGAATGTGAGTGTGTGACA+TGG | - | chr7.3:45898957-45898976 | MS.gene66057:CDS | 40.0% | |
| ! | AAAGCTCAATTTTCTCCCCA+CGG | + | chr7.3:45899022-45899041 | None:intergenic | 40.0% |
| ! | ATTTTCCTGGGAACAGAGAA+GGG | + | chr7.3:45898804-45898823 | None:intergenic | 40.0% |
| ! | TATTTTCCTGGGAACAGAGA+AGG | + | chr7.3:45898805-45898824 | None:intergenic | 40.0% |
| ! | TGGTTTTCCTTTTCCTGTTG+AGG | - | chr7.3:45898353-45898372 | MS.gene66057:intron | 40.0% |
| ! | TTTTGCAGGCACAAGATTTC+AGG | - | chr7.3:45899946-45899965 | MS.gene66057:CDS | 40.0% |
| !! | TATGTCTTTTTGCTGTGGGT+GGG | - | chr7.3:45898842-45898861 | MS.gene66057:intron | 40.0% |
| !! | TTATGTCTTTTTGCTGTGGG+TGG | - | chr7.3:45898841-45898860 | MS.gene66057:intron | 40.0% |
| AAGGCAAGCATGTCTTGAGA+TGG | - | chr7.3:45899712-45899731 | MS.gene66057:intron | 45.0% | |
| CCAAGCTAAGGAGAAACATG+TGG | - | chr7.3:45899979-45899998 | MS.gene66057:CDS | 45.0% | |
| CCACATGTTTCTCCTTAGCT+TGG | + | chr7.3:45899982-45900001 | None:intergenic | 45.0% | |
| GCACAAGATTTCAGGCAACA+TGG | - | chr7.3:45899954-45899973 | MS.gene66057:CDS | 45.0% | |
| GCTATCGACGAGGTAATTGA+AGG | + | chr7.3:45897490-45897509 | None:intergenic | 45.0% | |
| GCTGAATACACTGAGTTCAC+CGG | - | chr7.3:45897381-45897400 | MS.gene66057:CDS | 45.0% | |
| GTACTGTGTTGAACATCCAG+AGG | - | chr7.3:45898677-45898696 | MS.gene66057:CDS | 45.0% | |
| TGTCGTGTCAGTTGAACATG+AGG | - | chr7.3:45898047-45898066 | MS.gene66057:intron | 45.0% | |
| TGTTCGACGAAGGAAGTTTC+TGG | + | chr7.3:45897437-45897456 | None:intergenic | 45.0% | |
| TTTCTGATCGAAGACGTGTC+TGG | + | chr7.3:45898003-45898022 | None:intergenic | 45.0% | |
| ! | ACGCCTTCAATTTGAAGCGT+CGG | - | chr7.3:45898071-45898090 | MS.gene66057:intron | 45.0% |
| ! | ATTTTCCCTTCTCTGTTCCC+AGG | - | chr7.3:45898796-45898815 | MS.gene66057:intron | 45.0% |
| !! | GAAAGCTTGCTAATCTCCTC+TGG | + | chr7.3:45898696-45898715 | None:intergenic | 45.0% |
| !! | GCTTTCTAAAGTGCAAGCTC+AGG | - | chr7.3:45898710-45898729 | MS.gene66057:CDS | 45.0% |
| !!! | TTATTTTCTTAAATTATTAT+TGG | + | chr7.3:45897846-45897865 | None:intergenic | 5.0% |
| ATCTACAGCTTCGTTGCTCG+CGG | - | chr7.3:45897345-45897364 | MS.gene66057:CDS | 50.0% | |
| CGATTACGAAAGGTCACTGC+AGG | + | chr7.3:45899820-45899839 | None:intergenic | 50.0% | |
| GGCAACATGGAACCAAGCTA+AGG | - | chr7.3:45899967-45899986 | MS.gene66057:CDS | 50.0% | |
| TACTGAATCCGCTATCGACG+AGG | + | chr7.3:45897500-45897519 | None:intergenic | 50.0% | |
| ! | AAGTTTCTGGAGACACTGCG+CGG | + | chr7.3:45897424-45897443 | None:intergenic | 50.0% |
| ! | GCACCGACGCTTCAAATTGA+AGG | + | chr7.3:45898077-45898096 | None:intergenic | 50.0% |
| ! | GTTGTTGCTGTTGAGTCTGC+TGG | - | chr7.3:45898435-45898454 | MS.gene66057:intron | 50.0% |
| ! | TTGCTGTTGAGTCTGCTGGA+CGG | - | chr7.3:45898439-45898458 | MS.gene66057:intron | 50.0% |
| ACCAACAGACCTGAGAGCGA+AGG | + | chr7.3:45899064-45899083 | None:intergenic | 55.0% | |
| ACCTTCGCTCTCAGGTCTGT+TGG | - | chr7.3:45899060-45899079 | MS.gene66057:intron | 55.0% | |
| AGTGCAAGCTCAGGTCTCAG+AGG | - | chr7.3:45898719-45898738 | MS.gene66057:CDS | 55.0% | |
| AGTTGTGTGGGAGAGAGCAG+TGG | + | chr7.3:45899181-45899200 | None:intergenic | 55.0% | |
| GACAGAGAACCTTCGCTCTC+AGG | - | chr7.3:45899052-45899071 | MS.gene66057:intron | 55.0% | |
| GCTCAGGTCTCAGAGGTCAA+AGG | - | chr7.3:45898726-45898745 | MS.gene66057:CDS | 55.0% | |
| GGCAATGGCGGTGAAGTTAC+CGG | + | chr7.3:45897403-45897422 | None:intergenic | 55.0% | |
| !! | TTTGGCAGGTTCTGGACCGT+GGG | - | chr7.3:45899003-45899022 | MS.gene66057:intron | 55.0% |
| !!! | TTTTGGCAGGTTCTGGACCG+TGG | - | chr7.3:45899002-45899021 | MS.gene66057:intron | 55.0% |
| !! | TTGGCAGGTTCTGGACCGTG+GGG | - | chr7.3:45899004-45899023 | MS.gene66057:intron | 60.0% |
| CTGGAGACACTGCGCGGCAA+TGG | + | chr7.3:45897418-45897437 | None:intergenic | 65.0% | |
| GAGACACTGCGCGGCAATGG+CGG | + | chr7.3:45897415-45897434 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 45897327 | 45900103 | 45897327 | ID=MS.gene66057 |
| chr7.3 | mRNA | 45897327 | 45900103 | 45897327 | ID=MS.gene66057.t1;Parent=MS.gene66057 |
| chr7.3 | exon | 45899914 | 45900103 | 45899914 | ID=MS.gene66057.t1.exon1;Parent=MS.gene66057.t1 |
| chr7.3 | CDS | 45899914 | 45900103 | 45899914 | ID=cds.MS.gene66057.t1;Parent=MS.gene66057.t1 |
| chr7.3 | exon | 45898862 | 45899003 | 45898862 | ID=MS.gene66057.t1.exon2;Parent=MS.gene66057.t1 |
| chr7.3 | CDS | 45898862 | 45899003 | 45898862 | ID=cds.MS.gene66057.t1;Parent=MS.gene66057.t1 |
| chr7.3 | exon | 45898657 | 45898777 | 45898657 | ID=MS.gene66057.t1.exon3;Parent=MS.gene66057.t1 |
| chr7.3 | CDS | 45898657 | 45898777 | 45898657 | ID=cds.MS.gene66057.t1;Parent=MS.gene66057.t1 |
| chr7.3 | exon | 45898357 | 45898419 | 45898357 | ID=MS.gene66057.t1.exon4;Parent=MS.gene66057.t1 |
| chr7.3 | CDS | 45898357 | 45898419 | 45898357 | ID=cds.MS.gene66057.t1;Parent=MS.gene66057.t1 |
| chr7.3 | exon | 45897327 | 45897476 | 45897327 | ID=MS.gene66057.t1.exon5;Parent=MS.gene66057.t1 |
| chr7.3 | CDS | 45897327 | 45897476 | 45897327 | ID=cds.MS.gene66057.t1;Parent=MS.gene66057.t1 |
| Gene Sequence |
| Protein sequence |
