Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70862.t1 | XP_003617238.1 | 98.5 | 194 | 3 | 0 | 1 | 194 | 1 | 194 | 1.70E-101 | 378.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70862.t1 | O49377 | 81.8 | 192 | 35 | 0 | 1 | 192 | 1 | 192 | 7.1e-88 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70862.t1 | G7K325 | 98.5 | 194 | 3 | 0 | 1 | 194 | 1 | 194 | 1.2e-101 | 378.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016966 | MS.gene70862 | PPI |
| MS.gene70862 | MS.gene004575 | PPI |
| MS.gene73141 | MS.gene70862 | PPI |
| MS.gene00315 | MS.gene70862 | PPI |
| MS.gene70862 | MS.gene53088 | PPI |
| MS.gene65117 | MS.gene70862 | PPI |
| MS.gene47655 | MS.gene70862 | PPI |
| MS.gene70862 | MS.gene016966 | PPI |
| MS.gene064565 | MS.gene70862 | PPI |
| MS.gene66057 | MS.gene70862 | PPI |
| MS.gene66728 | MS.gene70862 | PPI |
| MS.gene70948 | MS.gene70862 | PPI |
| MS.gene55293 | MS.gene70862 | PPI |
| MS.gene073364 | MS.gene70862 | PPI |
| MS.gene78212 | MS.gene70862 | PPI |
| MS.gene77217 | MS.gene70862 | PPI |
| MS.gene88213 | MS.gene70862 | PPI |
| MS.gene70862 | MS.gene029336 | PPI |
| MS.gene035781 | MS.gene70862 | PPI |
| MS.gene072972 | MS.gene70862 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70862.t1 | MTR_5g089370 | 98.454 | 194 | 3 | 0 | 1 | 194 | 1 | 194 | 1.90e-143 | 398 |
| MS.gene70862.t1 | MTR_4g115390 | 63.636 | 198 | 68 | 1 | 1 | 194 | 1 | 198 | 6.60e-97 | 281 |
| MS.gene70862.t1 | MTR_4g052550 | 59.474 | 190 | 77 | 0 | 1 | 190 | 1 | 190 | 2.17e-89 | 261 |
| MS.gene70862.t1 | MTR_1g111890 | 36.866 | 217 | 115 | 3 | 2 | 197 | 5 | 220 | 1.17e-47 | 156 |
| MS.gene70862.t1 | MTR_4g022570 | 40.000 | 190 | 111 | 3 | 3 | 190 | 6 | 194 | 2.01e-46 | 152 |
| MS.gene70862.t1 | MTR_7g058900 | 38.947 | 190 | 113 | 3 | 3 | 190 | 6 | 194 | 7.88e-46 | 151 |
| MS.gene70862.t1 | MTR_1g047720 | 38.021 | 192 | 116 | 3 | 3 | 192 | 6 | 196 | 1.27e-45 | 150 |
| MS.gene70862.t1 | MTR_2g028790 | 38.421 | 190 | 114 | 3 | 3 | 190 | 10 | 198 | 7.89e-44 | 145 |
| MS.gene70862.t1 | MTR_4g083490 | 37.368 | 190 | 116 | 3 | 3 | 190 | 8 | 196 | 4.86e-43 | 144 |
| MS.gene70862.t1 | MTR_2g436870 | 36.923 | 195 | 120 | 3 | 4 | 196 | 7 | 200 | 1.04e-40 | 137 |
| MS.gene70862.t1 | MTR_7g058640 | 34.555 | 191 | 122 | 3 | 2 | 190 | 5 | 194 | 1.25e-36 | 127 |
| MS.gene70862.t1 | MTR_7g058640 | 35.838 | 173 | 108 | 3 | 2 | 172 | 5 | 176 | 3.60e-32 | 115 |
| MS.gene70862.t1 | MTR_1g047710 | 35.135 | 148 | 80 | 4 | 39 | 184 | 3 | 136 | 3.47e-26 | 98.2 |
| MS.gene70862.t1 | MTR_4g022470 | 46.154 | 104 | 52 | 3 | 66 | 166 | 14 | 116 | 8.43e-24 | 91.3 |
| MS.gene70862.t1 | MTR_7g058640 | 32.759 | 116 | 76 | 2 | 77 | 190 | 1 | 116 | 2.23e-18 | 77.8 |
| MS.gene70862.t1 | MTR_4g105490 | 23.841 | 151 | 111 | 2 | 28 | 178 | 45 | 191 | 7.40e-13 | 64.7 |
| MS.gene70862.t1 | MTR_4g105490 | 25.581 | 129 | 94 | 1 | 50 | 178 | 56 | 182 | 2.33e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70862.t1 | AT4G32150 | 82.011 | 189 | 34 | 0 | 1 | 189 | 1 | 189 | 2.50e-119 | 337 |
| MS.gene70862.t1 | AT5G11150 | 76.410 | 195 | 45 | 1 | 1 | 194 | 1 | 195 | 4.69e-118 | 334 |
| MS.gene70862.t1 | AT5G11150 | 76.410 | 195 | 45 | 1 | 1 | 194 | 1 | 195 | 7.67e-118 | 334 |
| MS.gene70862.t1 | AT2G25340 | 79.894 | 189 | 38 | 0 | 1 | 189 | 1 | 189 | 1.78e-117 | 332 |
| MS.gene70862.t1 | AT5G22360 | 58.974 | 195 | 79 | 1 | 1 | 194 | 1 | 195 | 9.59e-90 | 262 |
| MS.gene70862.t1 | AT2G33120 | 39.474 | 190 | 112 | 3 | 3 | 190 | 6 | 194 | 4.40e-46 | 151 |
| MS.gene70862.t1 | AT3G54300 | 34.562 | 217 | 120 | 3 | 2 | 197 | 5 | 220 | 2.50e-45 | 150 |
| MS.gene70862.t1 | AT3G54300 | 34.562 | 217 | 120 | 3 | 2 | 197 | 5 | 220 | 2.50e-45 | 150 |
| MS.gene70862.t1 | AT3G54300 | 34.562 | 217 | 120 | 3 | 2 | 197 | 5 | 220 | 2.50e-45 | 150 |
| MS.gene70862.t1 | AT1G04760 | 36.735 | 196 | 121 | 3 | 3 | 196 | 6 | 200 | 5.23e-45 | 149 |
| MS.gene70862.t1 | AT1G04760 | 36.735 | 196 | 121 | 3 | 3 | 196 | 6 | 200 | 5.23e-45 | 149 |
| MS.gene70862.t1 | AT1G04750 | 38.947 | 190 | 113 | 3 | 3 | 190 | 6 | 194 | 6.59e-45 | 148 |
| MS.gene70862.t1 | AT2G32670 | 38.421 | 190 | 114 | 3 | 3 | 190 | 71 | 259 | 1.23e-43 | 147 |
| MS.gene70862.t1 | AT2G33120 | 37.374 | 198 | 113 | 4 | 3 | 190 | 6 | 202 | 8.02e-43 | 143 |
| MS.gene70862.t1 | AT4G15780 | 35.135 | 185 | 111 | 3 | 4 | 186 | 7 | 184 | 1.93e-36 | 125 |
| MS.gene70862.t1 | AT2G33110 | 36.269 | 193 | 110 | 7 | 3 | 190 | 6 | 190 | 2.82e-32 | 116 |
| MS.gene70862.t1 | AT2G33110 | 38.509 | 161 | 92 | 4 | 2 | 158 | 5 | 162 | 1.79e-30 | 110 |
| MS.gene70862.t1 | AT1G04750 | 36.207 | 116 | 72 | 2 | 77 | 190 | 1 | 116 | 4.09e-22 | 87.8 |
| MS.gene70862.t1 | AT1G04750 | 36.207 | 116 | 72 | 2 | 77 | 190 | 1 | 116 | 4.09e-22 | 87.8 |
| MS.gene70862.t1 | AT1G04750 | 36.207 | 116 | 72 | 2 | 77 | 190 | 1 | 116 | 4.09e-22 | 87.8 |
| MS.gene70862.t1 | AT2G33120 | 44.262 | 61 | 34 | 0 | 130 | 190 | 52 | 112 | 1.10e-12 | 63.2 |
| MS.gene70862.t1 | AT5G58060 | 22.436 | 156 | 117 | 2 | 28 | 183 | 45 | 196 | 7.19e-11 | 59.3 |
Find 47 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAATATTGACAAAGTTT+TGG | 0.239741 | 5.3:+72072639 | MS.gene70862:CDS |
| AACATGTGTATCGTTGTTTC+CGG | 0.248239 | 5.3:-72071531 | None:intergenic |
| GATAGGATTAATCGGCTTAA+AGG | 0.299245 | 5.3:+72071794 | MS.gene70862:CDS |
| CAGAGGTTTGTAAGGAGTTA+TGG | 0.338003 | 5.3:+72071674 | MS.gene70862:CDS |
| AGATTCATCAGAGGTTTGTA+AGG | 0.404505 | 5.3:+72071666 | MS.gene70862:CDS |
| AGGTGATAGATTGGAATTGC+TGG | 0.413308 | 5.3:+72072666 | MS.gene70862:CDS |
| TTTGGATAGAGGTGATAGAT+TGG | 0.413502 | 5.3:+72072657 | MS.gene70862:CDS |
| CGCGCTGGTGGCGCGTGGAA+CGG | 0.419354 | 5.3:+72071436 | MS.gene70862:CDS |
| ACATGTGTATCGTTGTTTCC+GGG | 0.436400 | 5.3:-72071530 | None:intergenic |
| GGCGGCGTTTGTTGTTGTTC+CGG | 0.443043 | 5.3:-72071477 | None:intergenic |
| CCTATCAGCATTCGGATCAC+TGG | 0.457235 | 5.3:-72071777 | None:intergenic |
| CGAATGCTGATAGGATTAAT+CGG | 0.459876 | 5.3:+72071786 | MS.gene70862:CDS |
| TCAGCTTAAGCTTAGGTGGT+GGG | 0.462412 | 5.3:+72073131 | MS.gene70862:intron |
| TTCAGCTTAAGCTTAGGTGG+TGG | 0.471849 | 5.3:+72073130 | MS.gene70862:intron |
| CCAGTGATCCGAATGCTGAT+AGG | 0.476298 | 5.3:+72071777 | MS.gene70862:CDS |
| TGGACTCACGGTGCTGTGTA+TGG | 0.483242 | 5.3:+72071598 | MS.gene70862:CDS |
| ACTGTCTTCAGCTTAAGCTT+AGG | 0.487679 | 5.3:+72073124 | MS.gene70862:intron |
| CAAACGCCGCCGCAATCGCG+CGG | 0.490314 | 5.3:+72071489 | MS.gene70862:CDS |
| CGATTAATCCTATCAGCATT+CGG | 0.491371 | 5.3:-72071785 | None:intergenic |
| GTCGCTTTAGAAGCACTGTC+TGG | 0.502008 | 5.3:+72072743 | MS.gene70862:CDS |
| CATGTGTATCGTTGTTTCCG+GGG | 0.512854 | 5.3:-72071529 | None:intergenic |
| CAGCTTAAGCTTAGGTGGTG+GGG | 0.520916 | 5.3:+72073132 | MS.gene70862:intron |
| CTCTACGCGCTGGTGGCGCG+TGG | 0.524194 | 5.3:+72071431 | MS.gene70862:CDS |
| GCTTAAAGGTGAAATGTCTC+AGG | 0.529462 | 5.3:+72071808 | MS.gene70862:CDS |
| ATCTCTTCAAGAAACGCAAA+CGG | 0.535896 | 5.3:-72071647 | None:intergenic |
| GAGGATTTGCCGCGCGATTG+CGG | 0.538753 | 5.3:-72071498 | None:intergenic |
| GTGGTTCTCGCGGAATTCAC+CGG | 0.548241 | 5.3:+72071458 | MS.gene70862:CDS |
| GTCTTCAGCTTAAGCTTAGG+TGG | 0.553802 | 5.3:+72073127 | MS.gene70862:intron |
| CAAATCCTCGAGAAAATCCC+CGG | 0.556101 | 5.3:+72071512 | MS.gene70862:CDS |
| TTAGAAGCACTGTCTGGTGG+AGG | 0.558410 | 5.3:+72072749 | MS.gene70862:CDS |
| GCTGGTGGCGCGTGGAACGG+TGG | 0.578906 | 5.3:+72071439 | MS.gene70862:CDS |
| GATAAAGCTGCTAATATGCA+AGG | 0.579433 | 5.3:+72072691 | MS.gene70862:CDS |
| GCGTGGAACGGTGGTTCTCG+CGG | 0.582843 | 5.3:+72071448 | MS.gene70862:CDS |
| ATGTTTCGTATTCACAAGAT+CGG | 0.583230 | 5.3:+72071549 | MS.gene70862:CDS |
| GATTTGCCGCGCGATTGCGG+CGG | 0.588839 | 5.3:-72071495 | None:intergenic |
| GCTTTAGAAGCACTGTCTGG+TGG | 0.589136 | 5.3:+72072746 | MS.gene70862:CDS |
| TGATAGATTGGAATTGCTGG+TGG | 0.593278 | 5.3:+72072669 | MS.gene70862:CDS |
| GAAACGAACCGATGGACTCA+CGG | 0.607839 | 5.3:+72071586 | MS.gene70862:CDS |
| ACACAGCACCGTGAGTCCAT+CGG | 0.624165 | 5.3:-72071594 | None:intergenic |
| TTTCACGTGAAACGAACCGA+TGG | 0.628828 | 5.3:+72071578 | MS.gene70862:CDS |
| GGGTATACTCTACGCGCTGG+TGG | 0.634486 | 5.3:+72071424 | MS.gene70862:CDS |
| AATGGGTATACTCTACGCGC+TGG | 0.637918 | 5.3:+72071421 | None:intergenic |
| TGTAAGGAGTTATGGACGTG+CGG | 0.656982 | 5.3:+72071682 | MS.gene70862:CDS |
| TTCTTGAAGAGATTCATCAG+AGG | 0.658130 | 5.3:+72071657 | MS.gene70862:CDS |
| TGGCGGATGATAGCGTTGGA+CGG | 0.663803 | 5.3:+72071618 | MS.gene70862:CDS |
| TGTATGGCGGATGATAGCGT+TGG | 0.668509 | 5.3:+72071614 | MS.gene70862:CDS |
| ACTCACGGTGCTGTGTATGG+CGG | 0.734585 | 5.3:+72071601 | MS.gene70862:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAAAAAACTTATAAA+CGG | - | chr5.3:72072851-72072870 | None:intergenic | 10.0% |
| !!! | TTCTATTTTTTTTTTTTTAC+AGG | + | chr5.3:72072600-72072619 | MS.gene70862:intron | 10.0% |
| !!! | AAATTGATTTTGATATGTTT+GGG | + | chr5.3:72072196-72072215 | MS.gene70862:intron | 15.0% |
| !! | GACAAATATTCTATCTTTAT+AGG | - | chr5.3:72072896-72072915 | None:intergenic | 20.0% |
| !! | GTTGAAAAATTGAATTTACA+CGG | + | chr5.3:72071912-72071931 | MS.gene70862:intron | 20.0% |
| !!! | AAAATCAATTTTAAATCTGC+AGG | - | chr5.3:72072304-72072323 | None:intergenic | 20.0% |
| !!! | AATTGATTTAAGTTGTTTGT+AGG | - | chr5.3:72072492-72072511 | None:intergenic | 20.0% |
| !!! | AATTGATTTTGATATGTTTG+GGG | + | chr5.3:72072197-72072216 | MS.gene70862:intron | 20.0% |
| !!! | AGAAAATATTGACAAAGTTT+TGG | + | chr5.3:72072639-72072658 | MS.gene70862:CDS | 20.0% |
| !!! | GAAATTGATTTTGATATGTT+TGG | + | chr5.3:72072195-72072214 | MS.gene70862:intron | 20.0% |
| !!! | TATGAATGATGAATTTTCTA+GGG | + | chr5.3:72071727-72071746 | MS.gene70862:CDS | 20.0% |
| !!! | TCTGTTTTAATTATCATTCT+TGG | + | chr5.3:72072956-72072975 | MS.gene70862:intron | 20.0% |
| ! | AAGATAGAATATTTGTCTCT+TGG | + | chr5.3:72072899-72072918 | MS.gene70862:intron | 25.0% |
| ! | AATTAAAACAGACGAAGAAA+AGG | - | chr5.3:72072948-72072967 | None:intergenic | 25.0% |
| ! | AATTAAGTGTATGTTTCGAT+TGG | + | chr5.3:72071993-72072012 | MS.gene70862:intron | 25.0% |
| ! | AGATAGAATATTTGTCTCTT+GGG | + | chr5.3:72072900-72072919 | MS.gene70862:intron | 25.0% |
| ! | ATCACATTTATTAATCTCTG+AGG | - | chr5.3:72073041-72073060 | None:intergenic | 25.0% |
| ! | ATGATACATTGAATTAGAAG+TGG | + | chr5.3:72071886-72071905 | MS.gene70862:intron | 25.0% |
| ! | CTTTATAGGTTCAACTTATA+TGG | - | chr5.3:72072882-72072901 | None:intergenic | 25.0% |
| ! | GAATAATGTTTGTCAAACTT+AGG | + | chr5.3:72072548-72072567 | MS.gene70862:intron | 25.0% |
| ! | TCACATTTATTAATCTCTGA+GGG | - | chr5.3:72073040-72073059 | None:intergenic | 25.0% |
| ! | TGATACATTGAATTAGAAGT+GGG | + | chr5.3:72071887-72071906 | MS.gene70862:intron | 25.0% |
| !! | ATAGGATTTGTCAATTTTCA+TGG | + | chr5.3:72072987-72073006 | MS.gene70862:intron | 25.0% |
| !! | CTATGAATGATGAATTTTCT+AGG | + | chr5.3:72071726-72071745 | MS.gene70862:CDS | 25.0% |
| !! | TAGTTATGTTCTTCTTTTTG+TGG | + | chr5.3:72071834-72071853 | MS.gene70862:intron | 25.0% |
| AGTCAAAAGTTATTCTGTAG+TGG | + | chr5.3:72072171-72072190 | MS.gene70862:intron | 30.0% | |
| ATGTTTCGTATTCACAAGAT+CGG | + | chr5.3:72071549-72071568 | MS.gene70862:CDS | 30.0% | |
| GTTGTTTGTAGGTTTATGTT+TGG | - | chr5.3:72072481-72072500 | None:intergenic | 30.0% | |
| TCGATGTAAAAAATGCGTTT+AGG | - | chr5.3:72072423-72072442 | None:intergenic | 30.0% | |
| ! | AGCTTTTGTCAAGATTATGA+TGG | + | chr5.3:72072077-72072096 | MS.gene70862:intron | 30.0% |
| !!! | ATTGACAAAGTTTTGGATAG+AGG | + | chr5.3:72072646-72072665 | MS.gene70862:CDS | 30.0% |
| AAGTCAGAATCAAACTCTAG+AGG | - | chr5.3:72072377-72072396 | None:intergenic | 35.0% | |
| AGATTCATCAGAGGTTTGTA+AGG | + | chr5.3:72071666-72071685 | MS.gene70862:CDS | 35.0% | |
| AGTGTAATAACCATGATTGC+AGG | - | chr5.3:72072271-72072290 | None:intergenic | 35.0% | |
| ATCTCTTCAAGAAACGCAAA+CGG | - | chr5.3:72071650-72071669 | None:intergenic | 35.0% | |
| CGAATGCTGATAGGATTAAT+CGG | + | chr5.3:72071786-72071805 | MS.gene70862:CDS | 35.0% | |
| CGATTAATCCTATCAGCATT+CGG | - | chr5.3:72071788-72071807 | None:intergenic | 35.0% | |
| GATAAAGCTGCTAATATGCA+AGG | + | chr5.3:72072691-72072710 | MS.gene70862:CDS | 35.0% | |
| GTCAAGATTATGATGGCTTA+TGG | + | chr5.3:72072084-72072103 | MS.gene70862:intron | 35.0% | |
| TCAACAAAATCACGTTTCCA+CGG | - | chr5.3:72072039-72072058 | None:intergenic | 35.0% | |
| TCATTCTTGGCATGATCAAT+AGG | + | chr5.3:72072969-72072988 | MS.gene70862:intron | 35.0% | |
| TTCTTGAAGAGATTCATCAG+AGG | + | chr5.3:72071657-72071676 | MS.gene70862:CDS | 35.0% | |
| TTTGGATAGAGGTGATAGAT+TGG | + | chr5.3:72072657-72072676 | MS.gene70862:CDS | 35.0% | |
| ! | AACATGTGTATCGTTGTTTC+CGG | - | chr5.3:72071534-72071553 | None:intergenic | 35.0% |
| ! | GATAGGATTAATCGGCTTAA+AGG | + | chr5.3:72071794-72071813 | MS.gene70862:CDS | 35.0% |
| ! | TGCGTGTTTGGATTCATTTT+TGG | + | chr5.3:72072145-72072164 | MS.gene70862:intron | 35.0% |
| !! | GCGTGTTTGGATTCATTTTT+GGG | + | chr5.3:72072146-72072165 | MS.gene70862:intron | 35.0% |
| ACTGTCTTCAGCTTAAGCTT+AGG | + | chr5.3:72073124-72073143 | MS.gene70862:intron | 40.0% | |
| AGGTGATAGATTGGAATTGC+TGG | + | chr5.3:72072666-72072685 | MS.gene70862:CDS | 40.0% | |
| CAAACACGCACACATATGTT+TGG | - | chr5.3:72072135-72072154 | None:intergenic | 40.0% | |
| CAAACATATGTGTGCGTGTT+TGG | + | chr5.3:72072133-72072152 | MS.gene70862:intron | 40.0% | |
| CAGAGGTTTGTAAGGAGTTA+TGG | + | chr5.3:72071674-72071693 | MS.gene70862:CDS | 40.0% | |
| GCTTAAAGGTGAAATGTCTC+AGG | + | chr5.3:72071808-72071827 | MS.gene70862:CDS | 40.0% | |
| GTTTGGACTGACAGTGAATT+TGG | - | chr5.3:72072118-72072137 | None:intergenic | 40.0% | |
| TGATAGATTGGAATTGCTGG+TGG | + | chr5.3:72072669-72072688 | MS.gene70862:CDS | 40.0% | |
| ! | ACATGTGTATCGTTGTTTCC+GGG | - | chr5.3:72071533-72071552 | None:intergenic | 40.0% |
| ! | ATTAATCTCTGAGGGTTCGA+AGG | - | chr5.3:72073032-72073051 | None:intergenic | 40.0% |
| !!! | TAGGGTTTTGAATCAGCAGA+TGG | + | chr5.3:72071745-72071764 | MS.gene70862:CDS | 40.0% |
| !!! | TGAGTTTTGAGAAATCACCG+TGG | + | chr5.3:72072019-72072038 | MS.gene70862:intron | 40.0% |
| CAAACTTAGGAATGTGCCAG+TGG | + | chr5.3:72072561-72072580 | MS.gene70862:intron | 45.0% | |
| CAAATCCTCGAGAAAATCCC+CGG | + | chr5.3:72071512-72071531 | MS.gene70862:CDS | 45.0% | |
| GTCTTCAGCTTAAGCTTAGG+TGG | + | chr5.3:72073127-72073146 | MS.gene70862:intron | 45.0% | |
| TCAGCTTAAGCTTAGGTGGT+GGG | + | chr5.3:72073131-72073150 | MS.gene70862:intron | 45.0% | |
| TGTAAGGAGTTATGGACGTG+CGG | + | chr5.3:72071682-72071701 | MS.gene70862:CDS | 45.0% | |
| TTCAGCTTAAGCTTAGGTGG+TGG | + | chr5.3:72073130-72073149 | MS.gene70862:intron | 45.0% | |
| TTTCACGTGAAACGAACCGA+TGG | + | chr5.3:72071578-72071597 | MS.gene70862:CDS | 45.0% | |
| ! | CATGTGTATCGTTGTTTCCG+GGG | - | chr5.3:72071532-72071551 | None:intergenic | 45.0% |
| ! | GTAGCTTTTGCCTGCAATCA+TGG | + | chr5.3:72072258-72072277 | MS.gene70862:intron | 45.0% |
| ACCTGAGCAAAGACAACCAC+TGG | - | chr5.3:72072580-72072599 | None:intergenic | 50.0% | |
| CAGCTTAAGCTTAGGTGGTG+GGG | + | chr5.3:72073132-72073151 | MS.gene70862:intron | 50.0% | |
| CCAGTGATCCGAATGCTGAT+AGG | + | chr5.3:72071777-72071796 | MS.gene70862:CDS | 50.0% | |
| CCTATCAGCATTCGGATCAC+TGG | - | chr5.3:72071780-72071799 | None:intergenic | 50.0% | |
| ! | GAAACGAACCGATGGACTCA+CGG | + | chr5.3:72071586-72071605 | MS.gene70862:CDS | 50.0% |
| ! | TGTTTCCGGGGATTTTCTCG+AGG | - | chr5.3:72071520-72071539 | None:intergenic | 50.0% |
| !! | GCTTTAGAAGCACTGTCTGG+TGG | + | chr5.3:72072746-72072765 | MS.gene70862:CDS | 50.0% |
| !! | GTCGCTTTAGAAGCACTGTC+TGG | + | chr5.3:72072743-72072762 | MS.gene70862:CDS | 50.0% |
| !! | TGTATGGCGGATGATAGCGT+TGG | + | chr5.3:72071614-72071633 | MS.gene70862:CDS | 50.0% |
| !! | TTAGAAGCACTGTCTGGTGG+AGG | + | chr5.3:72072749-72072768 | MS.gene70862:CDS | 50.0% |
| ACACAGCACCGTGAGTCCAT+CGG | - | chr5.3:72071597-72071616 | None:intergenic | 55.0% | |
| GCCAGTGGTTGTCTTTGCTC+AGG | + | chr5.3:72072576-72072595 | MS.gene70862:intron | 55.0% | |
| GTGGTTCTCGCGGAATTCAC+CGG | + | chr5.3:72071458-72071477 | MS.gene70862:CDS | 55.0% | |
| ! | TGGCGGATGATAGCGTTGGA+CGG | + | chr5.3:72071618-72071637 | MS.gene70862:CDS | 55.0% |
| !! | ACTCACGGTGCTGTGTATGG+CGG | + | chr5.3:72071601-72071620 | MS.gene70862:CDS | 55.0% |
| !! | GGCGGCGTTTGTTGTTGTTC+CGG | - | chr5.3:72071480-72071499 | None:intergenic | 55.0% |
| !! | TGGACTCACGGTGCTGTGTA+TGG | + | chr5.3:72071598-72071617 | MS.gene70862:CDS | 55.0% |
| !!! | TGGACGTGCGGTTTTGACTG+CGG | + | chr5.3:72071694-72071713 | MS.gene70862:CDS | 55.0% |
| CTTGGGTCGAGCGAAGCTGT+TGG | + | chr5.3:72072917-72072936 | MS.gene70862:intron | 60.0% | |
| GAGGATTTGCCGCGCGATTG+CGG | - | chr5.3:72071501-72071520 | None:intergenic | 60.0% | |
| GGGTATACTCTACGCGCTGG+TGG | + | chr5.3:72071424-72071443 | MS.gene70862:CDS | 60.0% | |
| GATTTGCCGCGCGATTGCGG+CGG | - | chr5.3:72071498-72071517 | None:intergenic | 65.0% | |
| GCGTGGAACGGTGGTTCTCG+CGG | + | chr5.3:72071448-72071467 | MS.gene70862:CDS | 65.0% | |
| CAAACGCCGCCGCAATCGCG+CGG | + | chr5.3:72071489-72071508 | MS.gene70862:CDS | 70.0% | |
| ! | CGCGCTGGTGGCGCGTGGAA+CGG | + | chr5.3:72071436-72071455 | MS.gene70862:CDS | 75.0% |
| ! | CTCTACGCGCTGGTGGCGCG+TGG | + | chr5.3:72071431-72071450 | MS.gene70862:CDS | 75.0% |
| ! | GCTGGTGGCGCGTGGAACGG+TGG | + | chr5.3:72071439-72071458 | MS.gene70862:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 72071422 | 72073159 | 72071422 | ID=MS.gene70862 |
| chr5.3 | mRNA | 72071422 | 72073159 | 72071422 | ID=MS.gene70862.t1;Parent=MS.gene70862 |
| chr5.3 | exon | 72071422 | 72071829 | 72071422 | ID=MS.gene70862.t1.exon1;Parent=MS.gene70862.t1 |
| chr5.3 | CDS | 72071422 | 72071829 | 72071422 | ID=cds.MS.gene70862.t1;Parent=MS.gene70862.t1 |
| chr5.3 | exon | 72072622 | 72072785 | 72072622 | ID=MS.gene70862.t1.exon2;Parent=MS.gene70862.t1 |
| chr5.3 | CDS | 72072622 | 72072785 | 72072622 | ID=cds.MS.gene70862.t1;Parent=MS.gene70862.t1 |
| chr5.3 | exon | 72073135 | 72073159 | 72073135 | ID=MS.gene70862.t1.exon3;Parent=MS.gene70862.t1 |
| chr5.3 | CDS | 72073135 | 72073159 | 72073135 | ID=cds.MS.gene70862.t1;Parent=MS.gene70862.t1 |
| Gene Sequence |
| Protein sequence |
