Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65117.t1 | XP_003622969.1 | 98.6 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 2.60E-114 | 421.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65117.t1 | O48850 | 82.3 | 220 | 39 | 0 | 1 | 220 | 66 | 285 | 7.7e-99 | 361.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65117.t1 | G7L2A6 | 98.6 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.9e-114 | 421.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65117.t1 | MTR_7g058900 | 98.643 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.02e-163 | 451 |
| MS.gene65117.t1 | MTR_1g047720 | 80.822 | 219 | 42 | 0 | 1 | 219 | 1 | 219 | 3.39e-139 | 389 |
| MS.gene65117.t1 | MTR_4g022570 | 84.475 | 219 | 34 | 0 | 1 | 219 | 1 | 219 | 1.50e-130 | 367 |
| MS.gene65117.t1 | MTR_2g436870 | 70.455 | 220 | 65 | 0 | 1 | 220 | 1 | 220 | 1.20e-120 | 342 |
| MS.gene65117.t1 | MTR_4g083490 | 79.275 | 193 | 40 | 0 | 3 | 195 | 5 | 197 | 4.85e-118 | 335 |
| MS.gene65117.t1 | MTR_2g028790 | 75.648 | 193 | 47 | 0 | 3 | 195 | 7 | 199 | 2.46e-113 | 323 |
| MS.gene65117.t1 | MTR_7g058640 | 71.795 | 195 | 55 | 0 | 1 | 195 | 1 | 195 | 5.61e-105 | 301 |
| MS.gene65117.t1 | MTR_1g111890 | 55.042 | 238 | 88 | 1 | 1 | 219 | 1 | 238 | 6.01e-98 | 285 |
| MS.gene65117.t1 | MTR_7g058640 | 71.512 | 172 | 49 | 0 | 1 | 172 | 1 | 172 | 1.03e-91 | 267 |
| MS.gene65117.t1 | MTR_1g047710 | 80.645 | 124 | 24 | 0 | 64 | 187 | 12 | 135 | 2.60e-72 | 216 |
| MS.gene65117.t1 | MTR_4g022470 | 82.407 | 108 | 19 | 0 | 64 | 171 | 10 | 117 | 3.90e-61 | 187 |
| MS.gene65117.t1 | MTR_7g058640 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 9.66e-58 | 179 |
| MS.gene65117.t1 | MTR_4g052550 | 37.089 | 213 | 131 | 3 | 5 | 216 | 2 | 212 | 2.66e-48 | 158 |
| MS.gene65117.t1 | MTR_5g089370 | 37.736 | 212 | 129 | 3 | 6 | 216 | 3 | 212 | 3.59e-47 | 155 |
| MS.gene65117.t1 | MTR_4g115390 | 32.870 | 216 | 138 | 3 | 6 | 216 | 3 | 216 | 1.69e-41 | 140 |
| MS.gene65117.t1 | MTR_4g022550 | 85.484 | 62 | 9 | 0 | 158 | 219 | 10 | 71 | 1.89e-20 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65117.t1 | AT1G04760 | 83.636 | 220 | 36 | 0 | 1 | 220 | 1 | 220 | 7.07e-135 | 377 |
| MS.gene65117.t1 | AT1G04760 | 83.636 | 220 | 36 | 0 | 1 | 220 | 1 | 220 | 7.07e-135 | 377 |
| MS.gene65117.t1 | AT2G32670 | 84.545 | 220 | 34 | 0 | 1 | 220 | 66 | 285 | 9.38e-131 | 370 |
| MS.gene65117.t1 | AT2G33120 | 85.068 | 221 | 33 | 0 | 1 | 221 | 1 | 221 | 1.84e-130 | 367 |
| MS.gene65117.t1 | AT1G04750 | 83.562 | 219 | 36 | 0 | 1 | 219 | 1 | 219 | 1.10e-127 | 359 |
| MS.gene65117.t1 | AT2G33120 | 81.659 | 229 | 34 | 1 | 1 | 221 | 1 | 229 | 9.27e-127 | 357 |
| MS.gene65117.t1 | AT3G54300 | 56.067 | 239 | 86 | 1 | 1 | 220 | 1 | 239 | 1.99e-101 | 294 |
| MS.gene65117.t1 | AT3G54300 | 56.067 | 239 | 86 | 1 | 1 | 220 | 1 | 239 | 1.99e-101 | 294 |
| MS.gene65117.t1 | AT3G54300 | 56.067 | 239 | 86 | 1 | 1 | 220 | 1 | 239 | 1.99e-101 | 294 |
| MS.gene65117.t1 | AT2G33110 | 69.231 | 221 | 64 | 1 | 1 | 221 | 1 | 217 | 1.95e-98 | 285 |
| MS.gene65117.t1 | AT4G15780 | 69.274 | 179 | 54 | 1 | 1 | 178 | 1 | 179 | 8.51e-91 | 265 |
| MS.gene65117.t1 | AT2G33110 | 72.222 | 162 | 45 | 0 | 1 | 162 | 1 | 162 | 9.65e-86 | 252 |
| MS.gene65117.t1 | AT1G04750 | 81.560 | 141 | 26 | 0 | 79 | 219 | 1 | 141 | 1.11e-69 | 209 |
| MS.gene65117.t1 | AT1G04750 | 81.560 | 141 | 26 | 0 | 79 | 219 | 1 | 141 | 1.11e-69 | 209 |
| MS.gene65117.t1 | AT1G04750 | 81.560 | 141 | 26 | 0 | 79 | 219 | 1 | 141 | 1.11e-69 | 209 |
| MS.gene65117.t1 | AT5G22360 | 38.785 | 214 | 127 | 3 | 5 | 216 | 2 | 213 | 5.44e-54 | 172 |
| MS.gene65117.t1 | AT5G11150 | 39.535 | 215 | 124 | 5 | 5 | 216 | 2 | 213 | 2.29e-51 | 166 |
| MS.gene65117.t1 | AT5G11150 | 39.535 | 215 | 124 | 5 | 5 | 216 | 2 | 213 | 3.26e-51 | 166 |
| MS.gene65117.t1 | AT4G32150 | 38.028 | 213 | 129 | 3 | 5 | 216 | 2 | 212 | 4.96e-48 | 157 |
| MS.gene65117.t1 | AT2G25340 | 37.368 | 190 | 116 | 3 | 5 | 193 | 2 | 189 | 1.27e-41 | 141 |
| MS.gene65117.t1 | AT2G33120 | 84.375 | 96 | 15 | 0 | 126 | 221 | 44 | 139 | 3.19e-38 | 129 |
| MS.gene65117.t1 | AT3G24890 | 56.383 | 94 | 35 | 2 | 113 | 200 | 14 | 107 | 2.54e-26 | 99.0 |
| MS.gene65117.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.56e-15 | 69.3 |
| MS.gene65117.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.56e-15 | 69.3 |
| MS.gene65117.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.56e-15 | 69.3 |
| MS.gene65117.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.56e-15 | 69.3 |
Find 47 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGCTTTATCTTCATATTT+TGG | 0.145204 | 7.1:+42609119 | None:intergenic |
| AAAGAACAATAATGAGAATT+AGG | 0.159352 | 7.1:+42609074 | None:intergenic |
| TGTTCGACGAAGGAAGTTTC+TGG | 0.225140 | 7.1:+42611871 | None:intergenic |
| GAAGATAAAGCTAATTGTTC+TGG | 0.270272 | 7.1:-42609110 | MS.gene65117:CDS |
| AAGAGTCTCAATAAAGAGTT+TGG | 0.296926 | 7.1:-42610727 | MS.gene65117:CDS |
| GAAAGCTTGCTAATCTCCTC+TGG | 0.379999 | 7.1:+42610484 | None:intergenic |
| AAGAACAATAATGAGAATTA+GGG | 0.385939 | 7.1:+42609075 | None:intergenic |
| GTTGTTGCTGTTGAGTCTGC+TGG | 0.391522 | 7.1:-42610838 | MS.gene65117:CDS |
| GATCTACAGCTTCGTTGCTC+GGG | 0.392658 | 7.1:-42611961 | MS.gene65117:CDS |
| TGATCTACAGCTTCGTTGCT+CGG | 0.394512 | 7.1:-42611962 | MS.gene65117:CDS |
| AATCTTCCTTGATACGTTCA+AGG | 0.408743 | 7.1:+42610794 | None:intergenic |
| ATACGTTCAAGGAAAGCAAT+TGG | 0.426895 | 7.1:+42610805 | None:intergenic |
| GACAGAGAACCTTCGCTCTC+AGG | 0.438230 | 7.1:-42610125 | MS.gene65117:intron |
| TGCTTTCCTTGAACGTATCA+AGG | 0.453306 | 7.1:-42610800 | MS.gene65117:CDS |
| AAGATAAAGCTAATTGTTCT+GGG | 0.458032 | 7.1:-42609109 | MS.gene65117:CDS |
| ATTATTGTTCTTTCAATCTG+TGG | 0.460900 | 7.1:-42609064 | MS.gene65117:CDS |
| CTGGAGACACTGCGCGGCAA+TGG | 0.468297 | 7.1:+42611890 | None:intergenic |
| CCACATGTTTCTCCTAAGCT+TGG | 0.494084 | 7.1:+42609144 | None:intergenic |
| AAACTCTTTATTGAGACTCT+TGG | 0.500006 | 7.1:+42610729 | None:intergenic |
| ATGATGTAGATCTAAGTTGA+AGG | 0.511207 | 7.1:-42610533 | MS.gene65117:intron |
| ATTGTTCTTTCAATCTGTGG+TGG | 0.517961 | 7.1:-42609061 | MS.gene65117:CDS |
| AGAGTCTCAATAAAGAGTTT+GGG | 0.520977 | 7.1:-42610726 | MS.gene65117:intron |
| TTTGGCAGGTTCTGGACCGT+GGG | 0.521838 | 7.1:-42610174 | MS.gene65117:intron |
| GCTTTCTAAAGTGCAAGCTC+AGG | 0.524990 | 7.1:-42610467 | MS.gene65117:CDS |
| AGAGGTCAAAGGAGTTATGA+TGG | 0.525035 | 7.1:-42610440 | MS.gene65117:CDS |
| GGCAACATGGAACCAAGCTT+AGG | 0.549032 | 7.1:-42609156 | MS.gene65117:CDS |
| GCTGAATACACCGAGTTCAC+TGG | 0.549991 | 7.1:-42611924 | MS.gene65117:CDS |
| TTCAATTACCTCGTTGATAG+CGG | 0.554201 | 7.1:-42611816 | MS.gene65117:CDS |
| GCTATCAACGAGGTAATTGA+AGG | 0.555122 | 7.1:+42611818 | None:intergenic |
| ATCTACAGCTTCGTTGCTCG+GGG | 0.565359 | 7.1:-42611960 | MS.gene65117:CDS |
| GCTCAGGTCTCAGAGGTCAA+AGG | 0.570543 | 7.1:-42610451 | MS.gene65117:CDS |
| GCACAAGATTTCAGGCAACA+TGG | 0.581723 | 7.1:-42609169 | MS.gene65117:CDS |
| GAGACACTGCGCGGCAATGG+CGG | 0.591240 | 7.1:+42611893 | None:intergenic |
| AAAGCTTGCTAATCTCCTCT+GGG | 0.600356 | 7.1:+42610485 | None:intergenic |
| TATGATGGAGAATATTGAGA+AGG | 0.608070 | 7.1:-42610425 | MS.gene65117:intron |
| GGTGAAGTTACCAGTGAACT+CGG | 0.614892 | 7.1:+42611914 | None:intergenic |
| AAGTTCAATTACAACTGCGA+TGG | 0.621706 | 7.1:-42611846 | MS.gene65117:CDS |
| TTGAACTTATTGTTCGACGA+AGG | 0.638914 | 7.1:+42611861 | None:intergenic |
| AGTGCAAGCTCAGGTCTCAG+AGG | 0.652865 | 7.1:-42610458 | MS.gene65117:CDS |
| ACCAACAGACCTGAGAGCGA+AGG | 0.661970 | 7.1:+42610116 | None:intergenic |
| TTGCTGTTGAGTCTGCTGGA+CGG | 0.664323 | 7.1:-42610834 | MS.gene65117:CDS |
| TTTAGCAAGAAATATGCTGG+AGG | 0.673624 | 7.1:-42610772 | MS.gene65117:CDS |
| TTGGCAGGTTCTGGACCGTG+GGG | 0.702676 | 7.1:-42610173 | MS.gene65117:intron |
| TACTGAATCCGCTATCAACG+AGG | 0.721300 | 7.1:+42611808 | None:intergenic |
| CCAAGCTTAGGAGAAACATG+TGG | 0.755323 | 7.1:-42609144 | MS.gene65117:CDS |
| AAGTTTCTGGAGACACTGCG+CGG | 0.759403 | 7.1:+42611884 | None:intergenic |
| GTACTGTGTTGAACACCCAG+AGG | 0.812131 | 7.1:-42610500 | MS.gene65117:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATATATATAAATA+AGG | - | chr7.1:42609446-42609465 | MS.gene65117:intron | 0.0% |
| !! | ATTAACAAAATAAAAATTTC+AGG | + | chr7.1:42610331-42610350 | None:intergenic | 10.0% |
| !!! | AAAATTATTTGTTGATAAAA+TGG | - | chr7.1:42609909-42609928 | MS.gene65117:intron | 10.0% |
| !!! | TCTATAATATTTATCTATTT+TGG | - | chr7.1:42610828-42610847 | MS.gene65117:CDS | 10.0% |
| !! | TTGATAAAATGGAAAATTAA+GGG | - | chr7.1:42609920-42609939 | MS.gene65117:intron | 15.0% |
| !!! | TTATTTTGTTAATTTGCTAT+TGG | - | chr7.1:42610338-42610357 | MS.gene65117:intron | 15.0% |
| !!! | TTGAAAAAAATCCATATTTT+TGG | - | chr7.1:42611787-42611806 | MS.gene65117:intron | 15.0% |
| !! | AAAAATGATAGCCAAAAATA+TGG | + | chr7.1:42611801-42611820 | None:intergenic | 20.0% |
| !! | AAAGAACAATAATGAGAATT+AGG | + | chr7.1:42611949-42611968 | None:intergenic | 20.0% |
| !! | AAATAAATTGTATTCGATGT+AGG | - | chr7.1:42609837-42609856 | MS.gene65117:intron | 20.0% |
| !! | AAGAACAATAATGAGAATTA+GGG | + | chr7.1:42611948-42611967 | None:intergenic | 20.0% |
| !! | ATATATAAATAAGGCGTAAT+AGG | - | chr7.1:42609455-42609474 | MS.gene65117:intron | 20.0% |
| !! | ATATATAGTTAATAGGTAAG+AGG | - | chr7.1:42611289-42611308 | MS.gene65117:intron | 20.0% |
| !! | CTATATAGAATGAAAACTAA+GGG | - | chr7.1:42609960-42609979 | MS.gene65117:intron | 20.0% |
| !! | TAGACACATATATAGTTAAT+AGG | - | chr7.1:42611282-42611301 | MS.gene65117:intron | 20.0% |
| !! | TGATAAAATGGAAAATTAAG+GGG | - | chr7.1:42609921-42609940 | MS.gene65117:intron | 20.0% |
| !! | TTATCACAATAAGACTTAAA+AGG | - | chr7.1:42611434-42611453 | MS.gene65117:intron | 20.0% |
| !!! | ACATTTTCTTAAATTACTAC+CGG | + | chr7.1:42609677-42609696 | None:intergenic | 20.0% |
| !!! | GAATATCGATTAATTTTTTG+AGG | - | chr7.1:42611606-42611625 | MS.gene65117:intron | 20.0% |
| !!! | GTTGATAAAATGGAAAATTA+AGG | - | chr7.1:42609919-42609938 | MS.gene65117:intron | 20.0% |
| !!! | TAATATTTATCTATTTTGGC+AGG | - | chr7.1:42610832-42610851 | MS.gene65117:CDS | 20.0% |
| !!! | TAGAATATATTGTTTTCTCT+TGG | - | chr7.1:42610070-42610089 | MS.gene65117:intron | 20.0% |
| !!! | TTAGCTTTATCTTCATATTT+TGG | + | chr7.1:42611904-42611923 | None:intergenic | 20.0% |
| !!! | TTATTTTGTTAATTTGCTAG+TGG | - | chr7.1:42610434-42610453 | MS.gene65117:CDS | 20.0% |
| !!! | TTTTACTATAGCAATGTAAA+TGG | - | chr7.1:42610006-42610025 | MS.gene65117:intron | 20.0% |
| ! | AAGATAAAGCTAATTGTTCT+GGG | - | chr7.1:42611911-42611930 | MS.gene65117:CDS | 25.0% |
| ! | AATGTCATAGTTACATTGAA+TGG | - | chr7.1:42611351-42611370 | MS.gene65117:intron | 25.0% |
| ! | ATTATTGTTCTTTCAATCTG+TGG | - | chr7.1:42611956-42611975 | MS.gene65117:CDS | 25.0% |
| ! | ATTGAATGGAATGTTGTAAT+AGG | - | chr7.1:42611365-42611384 | MS.gene65117:intron | 25.0% |
| ! | GCTATATAGAATGAAAACTA+AGG | - | chr7.1:42609959-42609978 | MS.gene65117:intron | 25.0% |
| ! | GTAAAAACAAATCATCAGTA+AGG | - | chr7.1:42611546-42611565 | MS.gene65117:intron | 25.0% |
| ! | GTAATCTTCAATCATAATCA+TGG | - | chr7.1:42611231-42611250 | MS.gene65117:intron | 25.0% |
| ! | GTAATTATCATTGTAAGCAT+AGG | - | chr7.1:42611153-42611172 | MS.gene65117:intron | 25.0% |
| ! | TAAGACTTAAAAGGTAAATC+TGG | - | chr7.1:42611443-42611462 | MS.gene65117:intron | 25.0% |
| ! | TGTAAATGGTGAATTAAATC+TGG | - | chr7.1:42610020-42610039 | MS.gene65117:intron | 25.0% |
| !! | ACATTTTCTAAATCTGTGAA+TGG | - | chr7.1:42609396-42609415 | MS.gene65117:intron | 25.0% |
| !! | CAATTCATATATGATTTTGC+AGG | - | chr7.1:42611829-42611848 | MS.gene65117:CDS | 25.0% |
| !! | TTCAATCATAATCATGGTTT+TGG | - | chr7.1:42611237-42611256 | MS.gene65117:intron | 25.0% |
| !!! | AGTGTTTTTAGTAGTCAATA+TGG | - | chr7.1:42611128-42611147 | MS.gene65117:intron | 25.0% |
| !!! | CTACCTATTTTTATTTTCCT+GGG | + | chr7.1:42610659-42610678 | None:intergenic | 25.0% |
| !!! | TATCGATTAATTTTTTGAGG+TGG | - | chr7.1:42611609-42611628 | MS.gene65117:intron | 25.0% |
| !!! | TCTACCTATTTTTATTTTCC+TGG | + | chr7.1:42610660-42610679 | None:intergenic | 25.0% |
| !!! | TGGTAATGACATTTTGTATT+CGG | - | chr7.1:42609346-42609365 | MS.gene65117:intron | 25.0% |
| AAAACATCTTAAACCTCAAC+AGG | + | chr7.1:42610116-42610135 | None:intergenic | 30.0% | |
| AAACTCTTTATTGAGACTCT+TGG | + | chr7.1:42610294-42610313 | None:intergenic | 30.0% | |
| AAGAGTCTCAATAAAGAGTT+TGG | - | chr7.1:42610293-42610312 | MS.gene65117:intron | 30.0% | |
| AATAGGTATGTGATTCATGT+GGG | - | chr7.1:42611382-42611401 | MS.gene65117:intron | 30.0% | |
| AGAGTCTCAATAAAGAGTTT+GGG | - | chr7.1:42610294-42610313 | MS.gene65117:intron | 30.0% | |
| AGATTACTCAGAGTATACAT+TGG | + | chr7.1:42611218-42611237 | None:intergenic | 30.0% | |
| GAAAATGTTAAGGATGTAAG+TGG | + | chr7.1:42610625-42610644 | None:intergenic | 30.0% | |
| GAAGATAAAGCTAATTGTTC+TGG | - | chr7.1:42611910-42611929 | MS.gene65117:CDS | 30.0% | |
| GATAACCTAAAACGAAAAAG+TGG | + | chr7.1:42611419-42611438 | None:intergenic | 30.0% | |
| GTTCCCAGGAAAATAAAAAT+AGG | - | chr7.1:42610653-42610672 | MS.gene65117:intron | 30.0% | |
| TAAAAGGTAAATCTGGTATG+AGG | - | chr7.1:42611450-42611469 | MS.gene65117:intron | 30.0% | |
| TAATAGGTATGTGATTCATG+TGG | - | chr7.1:42611381-42611400 | MS.gene65117:intron | 30.0% | |
| TGTAATCATATGTGTAAGTG+TGG | - | chr7.1:42609707-42609726 | MS.gene65117:intron | 30.0% | |
| ! | AGCAGTCTTATAAAAGTGTA+GGG | - | chr7.1:42610967-42610986 | MS.gene65117:intron | 30.0% |
| ! | ATGATGTAGATCTAAGTTGA+AGG | - | chr7.1:42610391-42610410 | MS.gene65117:intron | 30.0% |
| ! | TACATTATGTCTTTTTGCTG+TGG | - | chr7.1:42610680-42610699 | MS.gene65117:intron | 30.0% |
| ! | TATGATGGAGAATATTGAGA+AGG | - | chr7.1:42610595-42610614 | MS.gene65117:intron | 30.0% |
| !! | ACATTATGTCTTTTTGCTGT+GGG | - | chr7.1:42610681-42610700 | MS.gene65117:intron | 30.0% |
| !! | GATTTTAGCAAGAAATATGC+TGG | - | chr7.1:42610245-42610264 | MS.gene65117:intron | 30.0% |
| !! | GGACATGGTATTATTTTTCT+TGG | - | chr7.1:42611652-42611671 | MS.gene65117:intron | 30.0% |
| !!! | TTTTGCCACTTTTTCGTTTT+AGG | - | chr7.1:42611411-42611430 | MS.gene65117:intron | 30.0% |
| AAGTTCAATTACAACTGCGA+TGG | - | chr7.1:42609174-42609193 | MS.gene65117:intron | 35.0% | |
| AATCTTCCTTGATACGTTCA+AGG | + | chr7.1:42610229-42610248 | None:intergenic | 35.0% | |
| ACAGAGAAGGGAAAATGTTA+AGG | + | chr7.1:42610635-42610654 | None:intergenic | 35.0% | |
| ATACGTTCAAGGAAAGCAAT+TGG | + | chr7.1:42610218-42610237 | None:intergenic | 35.0% | |
| ATTCTACTGTACACAGATCA+AGG | + | chr7.1:42609327-42609346 | None:intergenic | 35.0% | |
| ATTGTTCTTTCAATCTGTGG+TGG | - | chr7.1:42611959-42611978 | MS.gene65117:CDS | 35.0% | |
| CAACTTGAAACATGAACACT+TGG | + | chr7.1:42610771-42610790 | None:intergenic | 35.0% | |
| GCGTAAACTGTAGCATATTT+CGG | - | chr7.1:42611631-42611650 | MS.gene65117:intron | 35.0% | |
| GGGTGATAGATTGTTATAGA+TGG | - | chr7.1:42610987-42611006 | MS.gene65117:intron | 35.0% | |
| GTACATTGACACATTGAAAC+CGG | - | chr7.1:42609655-42609674 | MS.gene65117:intron | 35.0% | |
| TATAAGACTGCTGTGCTAAA+AGG | + | chr7.1:42610959-42610978 | None:intergenic | 35.0% | |
| TCTTAAACCTCAACAGGAAA+AGG | + | chr7.1:42610110-42610129 | None:intergenic | 35.0% | |
| TTGAACTTATTGTTCGACGA+AGG | + | chr7.1:42609162-42609181 | None:intergenic | 35.0% | |
| TTGATCTGTGTACAGTAGAA+TGG | - | chr7.1:42609326-42609345 | MS.gene65117:intron | 35.0% | |
| TTTAGCAAGAAATATGCTGG+AGG | - | chr7.1:42610248-42610267 | MS.gene65117:intron | 35.0% | |
| ! | AAACACAACATTGAGTTGTG+TGG | + | chr7.1:42611037-42611056 | None:intergenic | 35.0% |
| ! | AACACAACATTGAGTTGTGT+GGG | + | chr7.1:42611036-42611055 | None:intergenic | 35.0% |
| ! | CAAATTTGCTCTAGTACCTT+TGG | - | chr7.1:42611509-42611528 | MS.gene65117:intron | 35.0% |
| ! | CAGCAGTCTTATAAAAGTGT+AGG | - | chr7.1:42610966-42610985 | MS.gene65117:intron | 35.0% |
| ! | TGTTTTCTCTTGGTGAAGTT+TGG | - | chr7.1:42610080-42610099 | MS.gene65117:intron | 35.0% |
| ! | TTCAATTACCTCGTTGATAG+CGG | - | chr7.1:42609204-42609223 | MS.gene65117:intron | 35.0% |
| !!! | TTATCTATTTTGGCAGGTTC+TGG | - | chr7.1:42610838-42610857 | MS.gene65117:CDS | 35.0% |
| ACAAGCATACACAGATCCAA+AGG | + | chr7.1:42611528-42611547 | None:intergenic | 40.0% | |
| ACGTCTTCGATCAGAAATGT+CGG | - | chr7.1:42609745-42609764 | MS.gene65117:intron | 40.0% | |
| ACTGTAGCATATTTCGGACA+TGG | - | chr7.1:42611637-42611656 | MS.gene65117:intron | 40.0% | |
| AGAGGTCAAAGGAGTTATGA+TGG | - | chr7.1:42610580-42610599 | MS.gene65117:intron | 40.0% | |
| CATGCTATGAAGCACATAAG+CGG | - | chr7.1:42609619-42609638 | MS.gene65117:intron | 40.0% | |
| GAATCAAATTCCGCGTTTGA+AGG | + | chr7.1:42611686-42611705 | None:intergenic | 40.0% | |
| GCTATCAACGAGGTAATTGA+AGG | + | chr7.1:42609205-42609224 | None:intergenic | 40.0% | |
| GGTTTCTTTACCTTCAAACG+CGG | - | chr7.1:42611673-42611692 | MS.gene65117:intron | 40.0% | |
| TAAGTGCTCTCGATTACGAA+AGG | + | chr7.1:42611727-42611746 | None:intergenic | 40.0% | |
| TGCTTTCCTTGAACGTATCA+AGG | - | chr7.1:42610220-42610239 | MS.gene65117:intron | 40.0% | |
| TGTGTCAATGTACTTGTGTC+TGG | + | chr7.1:42609648-42609667 | None:intergenic | 40.0% | |
| TTGAATGTGAGTGTGTGACA+TGG | - | chr7.1:42610800-42610819 | MS.gene65117:CDS | 40.0% | |
| ! | AAAGCTCAATTTTCTCCCCA+CGG | + | chr7.1:42610865-42610884 | None:intergenic | 40.0% |
| ! | ATTTTCCTGGGAACAGAGAA+GGG | + | chr7.1:42610647-42610666 | None:intergenic | 40.0% |
| ! | TATTTTCCTGGGAACAGAGA+AGG | + | chr7.1:42610648-42610667 | None:intergenic | 40.0% |
| ! | TGGTTTTCCTTTTCCTGTTG+AGG | - | chr7.1:42610100-42610119 | MS.gene65117:intron | 40.0% |
| ! | TTTTGCAGGCACAAGATTTC+AGG | - | chr7.1:42611843-42611862 | MS.gene65117:CDS | 40.0% |
| !! | AAAGCTTGCTAATCTCCTCT+GGG | + | chr7.1:42610538-42610557 | None:intergenic | 40.0% |
| !! | TATGTCTTTTTGCTGTGGGT+GGG | - | chr7.1:42610685-42610704 | MS.gene65117:intron | 40.0% |
| !! | TTATGTCTTTTTGCTGTGGG+TGG | - | chr7.1:42610684-42610703 | MS.gene65117:intron | 40.0% |
| CCAAGCTTAGGAGAAACATG+TGG | - | chr7.1:42611876-42611895 | MS.gene65117:CDS | 45.0% | |
| CCACATGTTTCTCCTAAGCT+TGG | + | chr7.1:42611879-42611898 | None:intergenic | 45.0% | |
| GCACAAGATTTCAGGCAACA+TGG | - | chr7.1:42611851-42611870 | MS.gene65117:CDS | 45.0% | |
| GGTGAAGTTACCAGTGAACT+CGG | + | chr7.1:42609109-42609128 | None:intergenic | 45.0% | |
| TACTGAATCCGCTATCAACG+AGG | + | chr7.1:42609215-42609234 | None:intergenic | 45.0% | |
| TGATCTACAGCTTCGTTGCT+CGG | - | chr7.1:42609058-42609077 | MS.gene65117:CDS | 45.0% | |
| TGTCGTGTCAGTTGAACATG+AGG | - | chr7.1:42609786-42609805 | MS.gene65117:intron | 45.0% | |
| TGTTCGACGAAGGAAGTTTC+TGG | + | chr7.1:42609152-42609171 | None:intergenic | 45.0% | |
| TTTCTGATCGAAGACGTGTC+TGG | + | chr7.1:42609742-42609761 | None:intergenic | 45.0% | |
| ! | ATTTTCCCTTCTCTGTTCCC+AGG | - | chr7.1:42610639-42610658 | MS.gene65117:intron | 45.0% |
| !! | GAAAGCTTGCTAATCTCCTC+TGG | + | chr7.1:42610539-42610558 | None:intergenic | 45.0% |
| !! | GCTTTCTAAAGTGCAAGCTC+AGG | - | chr7.1:42610553-42610572 | MS.gene65117:intron | 45.0% |
| !!! | TTATTTTCTTAAATTATTAT+TGG | + | chr7.1:42609572-42609591 | None:intergenic | 5.0% |
| ATCTACAGCTTCGTTGCTCG+GGG | - | chr7.1:42609060-42609079 | MS.gene65117:CDS | 50.0% | |
| CGATTACGAAAGGTCACTGC+AGG | + | chr7.1:42611717-42611736 | None:intergenic | 50.0% | |
| GATCTACAGCTTCGTTGCTC+GGG | - | chr7.1:42609059-42609078 | MS.gene65117:CDS | 50.0% | |
| GCTGAATACACCGAGTTCAC+TGG | - | chr7.1:42609096-42609115 | MS.gene65117:CDS | 50.0% | |
| GGCAACATGGAACCAAGCTT+AGG | - | chr7.1:42611864-42611883 | MS.gene65117:CDS | 50.0% | |
| GTACTGTGTTGAACACCCAG+AGG | - | chr7.1:42610520-42610539 | MS.gene65117:CDS | 50.0% | |
| ! | AAGTTTCTGGAGACACTGCG+CGG | + | chr7.1:42609139-42609158 | None:intergenic | 50.0% |
| ! | ACGCCTTCAATCTGAAGCGT+CGG | - | chr7.1:42609810-42609829 | MS.gene65117:intron | 50.0% |
| ! | GTTGTTGCTGTTGAGTCTGC+TGG | - | chr7.1:42610182-42610201 | MS.gene65117:intron | 50.0% |
| ! | TTGCTGTTGAGTCTGCTGGA+CGG | - | chr7.1:42610186-42610205 | MS.gene65117:intron | 50.0% |
| ACCAACAGACCTGAGAGCGA+AGG | + | chr7.1:42610907-42610926 | None:intergenic | 55.0% | |
| ACCTTCGCTCTCAGGTCTGT+TGG | - | chr7.1:42610903-42610922 | MS.gene65117:intron | 55.0% | |
| AGTGCAAGCTCAGGTCTCAG+AGG | - | chr7.1:42610562-42610581 | MS.gene65117:intron | 55.0% | |
| AGTTGTGTGGGAGAGAGCAG+GGG | + | chr7.1:42611024-42611043 | None:intergenic | 55.0% | |
| GACAGAGAACCTTCGCTCTC+AGG | - | chr7.1:42610895-42610914 | MS.gene65117:intron | 55.0% | |
| GAGTTGTGTGGGAGAGAGCA+GGG | + | chr7.1:42611025-42611044 | None:intergenic | 55.0% | |
| GCTCAGGTCTCAGAGGTCAA+AGG | - | chr7.1:42610569-42610588 | MS.gene65117:intron | 55.0% | |
| TGAGTTGTGTGGGAGAGAGC+AGG | + | chr7.1:42611026-42611045 | None:intergenic | 55.0% | |
| ! | GCACCGACGCTTCAGATTGA+AGG | + | chr7.1:42609816-42609835 | None:intergenic | 55.0% |
| !! | TTTGGCAGGTTCTGGACCGT+GGG | - | chr7.1:42610846-42610865 | MS.gene65117:CDS | 55.0% |
| !!! | TTTTGGCAGGTTCTGGACCG+TGG | - | chr7.1:42610845-42610864 | MS.gene65117:CDS | 55.0% |
| !! | TTGGCAGGTTCTGGACCGTG+GGG | - | chr7.1:42610847-42610866 | MS.gene65117:CDS | 60.0% |
| CTGGAGACACTGCGCGGCAA+TGG | + | chr7.1:42609133-42609152 | None:intergenic | 65.0% | |
| GAGACACTGCGCGGCAATGG+CGG | + | chr7.1:42609130-42609149 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 42609042 | 42612000 | 42609042 | ID=MS.gene65117 |
| chr7.1 | mRNA | 42609042 | 42612000 | 42609042 | ID=MS.gene65117.t1;Parent=MS.gene65117 |
| chr7.1 | exon | 42611811 | 42612000 | 42611811 | ID=MS.gene65117.t1.exon1;Parent=MS.gene65117.t1 |
| chr7.1 | CDS | 42611811 | 42612000 | 42611811 | ID=cds.MS.gene65117.t1;Parent=MS.gene65117.t1 |
| chr7.1 | exon | 42610727 | 42610868 | 42610727 | ID=MS.gene65117.t1.exon2;Parent=MS.gene65117.t1 |
| chr7.1 | CDS | 42610727 | 42610868 | 42610727 | ID=cds.MS.gene65117.t1;Parent=MS.gene65117.t1 |
| chr7.1 | exon | 42610426 | 42610546 | 42610426 | ID=MS.gene65117.t1.exon3;Parent=MS.gene65117.t1 |
| chr7.1 | CDS | 42610426 | 42610546 | 42610426 | ID=cds.MS.gene65117.t1;Parent=MS.gene65117.t1 |
| chr7.1 | exon | 42610126 | 42610188 | 42610126 | ID=MS.gene65117.t1.exon4;Parent=MS.gene65117.t1 |
| chr7.1 | CDS | 42610126 | 42610188 | 42610126 | ID=cds.MS.gene65117.t1;Parent=MS.gene65117.t1 |
| chr7.1 | exon | 42609042 | 42609191 | 42609042 | ID=MS.gene65117.t1.exon5;Parent=MS.gene65117.t1 |
| chr7.1 | CDS | 42609042 | 42609191 | 42609042 | ID=cds.MS.gene65117.t1;Parent=MS.gene65117.t1 |
| Gene Sequence |
| Protein sequence |
