Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47655.t1 | XP_003617238.1 | 98.5 | 194 | 3 | 0 | 1 | 194 | 1 | 194 | 1.70E-101 | 378.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47655.t1 | O49377 | 81.8 | 192 | 35 | 0 | 1 | 192 | 1 | 192 | 7.1e-88 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47655.t1 | G7K325 | 98.5 | 194 | 3 | 0 | 1 | 194 | 1 | 194 | 1.2e-101 | 378.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47655 | MS.gene073364 | PPI |
| MS.gene47655 | MS.gene53088 | PPI |
| MS.gene47655 | MS.gene00315 | PPI |
| MS.gene66057 | MS.gene47655 | PPI |
| MS.gene47655 | MS.gene70862 | PPI |
| MS.gene65117 | MS.gene47655 | PPI |
| MS.gene47655 | MS.gene004575 | PPI |
| MS.gene47655 | MS.gene55293 | PPI |
| MS.gene47655 | MS.gene73141 | PPI |
| MS.gene47655 | MS.gene064565 | PPI |
| MS.gene47655 | MS.gene65117 | PPI |
| MS.gene47655 | MS.gene70948 | PPI |
| MS.gene47655 | MS.gene016966 | PPI |
| MS.gene47655 | MS.gene035781 | PPI |
| MS.gene47655 | MS.gene78212 | PPI |
| MS.gene47655 | MS.gene77217 | PPI |
| MS.gene47655 | MS.gene88213 | PPI |
| MS.gene47655 | MS.gene029336 | PPI |
| MS.gene47655 | MS.gene66057 | PPI |
| MS.gene47655 | MS.gene66728 | PPI |
| MS.gene47655 | MS.gene072972 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47655.t1 | MTR_5g089370 | 98.454 | 194 | 3 | 0 | 1 | 194 | 1 | 194 | 1.90e-143 | 398 |
| MS.gene47655.t1 | MTR_4g115390 | 63.636 | 198 | 68 | 1 | 1 | 194 | 1 | 198 | 6.60e-97 | 281 |
| MS.gene47655.t1 | MTR_4g052550 | 59.474 | 190 | 77 | 0 | 1 | 190 | 1 | 190 | 2.17e-89 | 261 |
| MS.gene47655.t1 | MTR_1g111890 | 36.866 | 217 | 115 | 3 | 2 | 197 | 5 | 220 | 1.17e-47 | 156 |
| MS.gene47655.t1 | MTR_4g022570 | 40.000 | 190 | 111 | 3 | 3 | 190 | 6 | 194 | 2.01e-46 | 152 |
| MS.gene47655.t1 | MTR_7g058900 | 38.947 | 190 | 113 | 3 | 3 | 190 | 6 | 194 | 7.88e-46 | 151 |
| MS.gene47655.t1 | MTR_1g047720 | 38.021 | 192 | 116 | 3 | 3 | 192 | 6 | 196 | 1.27e-45 | 150 |
| MS.gene47655.t1 | MTR_2g028790 | 38.421 | 190 | 114 | 3 | 3 | 190 | 10 | 198 | 7.89e-44 | 145 |
| MS.gene47655.t1 | MTR_4g083490 | 37.368 | 190 | 116 | 3 | 3 | 190 | 8 | 196 | 4.86e-43 | 144 |
| MS.gene47655.t1 | MTR_2g436870 | 36.923 | 195 | 120 | 3 | 4 | 196 | 7 | 200 | 1.04e-40 | 137 |
| MS.gene47655.t1 | MTR_7g058640 | 34.555 | 191 | 122 | 3 | 2 | 190 | 5 | 194 | 1.25e-36 | 127 |
| MS.gene47655.t1 | MTR_7g058640 | 35.838 | 173 | 108 | 3 | 2 | 172 | 5 | 176 | 3.60e-32 | 115 |
| MS.gene47655.t1 | MTR_1g047710 | 35.135 | 148 | 80 | 4 | 39 | 184 | 3 | 136 | 3.47e-26 | 98.2 |
| MS.gene47655.t1 | MTR_4g022470 | 46.154 | 104 | 52 | 3 | 66 | 166 | 14 | 116 | 8.43e-24 | 91.3 |
| MS.gene47655.t1 | MTR_7g058640 | 32.759 | 116 | 76 | 2 | 77 | 190 | 1 | 116 | 2.23e-18 | 77.8 |
| MS.gene47655.t1 | MTR_4g105490 | 23.841 | 151 | 111 | 2 | 28 | 178 | 45 | 191 | 7.40e-13 | 64.7 |
| MS.gene47655.t1 | MTR_4g105490 | 25.581 | 129 | 94 | 1 | 50 | 178 | 56 | 182 | 2.33e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47655.t1 | AT4G32150 | 82.011 | 189 | 34 | 0 | 1 | 189 | 1 | 189 | 2.50e-119 | 337 |
| MS.gene47655.t1 | AT5G11150 | 76.410 | 195 | 45 | 1 | 1 | 194 | 1 | 195 | 4.69e-118 | 334 |
| MS.gene47655.t1 | AT5G11150 | 76.410 | 195 | 45 | 1 | 1 | 194 | 1 | 195 | 7.67e-118 | 334 |
| MS.gene47655.t1 | AT2G25340 | 79.894 | 189 | 38 | 0 | 1 | 189 | 1 | 189 | 1.78e-117 | 332 |
| MS.gene47655.t1 | AT5G22360 | 58.974 | 195 | 79 | 1 | 1 | 194 | 1 | 195 | 9.59e-90 | 262 |
| MS.gene47655.t1 | AT2G33120 | 39.474 | 190 | 112 | 3 | 3 | 190 | 6 | 194 | 4.40e-46 | 151 |
| MS.gene47655.t1 | AT3G54300 | 34.562 | 217 | 120 | 3 | 2 | 197 | 5 | 220 | 2.50e-45 | 150 |
| MS.gene47655.t1 | AT3G54300 | 34.562 | 217 | 120 | 3 | 2 | 197 | 5 | 220 | 2.50e-45 | 150 |
| MS.gene47655.t1 | AT3G54300 | 34.562 | 217 | 120 | 3 | 2 | 197 | 5 | 220 | 2.50e-45 | 150 |
| MS.gene47655.t1 | AT1G04760 | 36.735 | 196 | 121 | 3 | 3 | 196 | 6 | 200 | 5.23e-45 | 149 |
| MS.gene47655.t1 | AT1G04760 | 36.735 | 196 | 121 | 3 | 3 | 196 | 6 | 200 | 5.23e-45 | 149 |
| MS.gene47655.t1 | AT1G04750 | 38.947 | 190 | 113 | 3 | 3 | 190 | 6 | 194 | 6.59e-45 | 148 |
| MS.gene47655.t1 | AT2G32670 | 38.421 | 190 | 114 | 3 | 3 | 190 | 71 | 259 | 1.23e-43 | 147 |
| MS.gene47655.t1 | AT2G33120 | 37.374 | 198 | 113 | 4 | 3 | 190 | 6 | 202 | 8.02e-43 | 143 |
| MS.gene47655.t1 | AT4G15780 | 35.135 | 185 | 111 | 3 | 4 | 186 | 7 | 184 | 1.93e-36 | 125 |
| MS.gene47655.t1 | AT2G33110 | 36.269 | 193 | 110 | 7 | 3 | 190 | 6 | 190 | 2.82e-32 | 116 |
| MS.gene47655.t1 | AT2G33110 | 38.509 | 161 | 92 | 4 | 2 | 158 | 5 | 162 | 1.79e-30 | 110 |
| MS.gene47655.t1 | AT1G04750 | 36.207 | 116 | 72 | 2 | 77 | 190 | 1 | 116 | 4.09e-22 | 87.8 |
| MS.gene47655.t1 | AT1G04750 | 36.207 | 116 | 72 | 2 | 77 | 190 | 1 | 116 | 4.09e-22 | 87.8 |
| MS.gene47655.t1 | AT1G04750 | 36.207 | 116 | 72 | 2 | 77 | 190 | 1 | 116 | 4.09e-22 | 87.8 |
| MS.gene47655.t1 | AT2G33120 | 44.262 | 61 | 34 | 0 | 130 | 190 | 52 | 112 | 1.10e-12 | 63.2 |
| MS.gene47655.t1 | AT5G58060 | 22.436 | 156 | 117 | 2 | 28 | 183 | 45 | 196 | 7.19e-11 | 59.3 |
Find 46 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAATATTGACAAAGTTT+TGG | 0.239741 | 5.2:-75796857 | MS.gene47655:CDS |
| AACATGTGTATCGTTGTTTC+CGG | 0.248239 | 5.2:+75797968 | None:intergenic |
| GATAGGATTAATCGGCTTAA+AGG | 0.299245 | 5.2:-75797705 | MS.gene47655:CDS |
| CAGAGGTTTGTAAGGAGTTA+TGG | 0.338003 | 5.2:-75797825 | MS.gene47655:CDS |
| AGATTCATCAGAGGTTTGTA+AGG | 0.404505 | 5.2:-75797833 | MS.gene47655:CDS |
| AGGTGATAGATTGGAATTGC+TGG | 0.413308 | 5.2:-75796830 | MS.gene47655:CDS |
| TTTGGATAGAGGTGATAGAT+TGG | 0.413502 | 5.2:-75796839 | MS.gene47655:CDS |
| CGCGCTGGTGGCGCGTGGAA+CGG | 0.419354 | 5.2:-75798063 | MS.gene47655:CDS |
| ACATGTGTATCGTTGTTTCC+GGG | 0.436400 | 5.2:+75797969 | None:intergenic |
| GGCGGCGTTTGTTGTTGTTC+CGG | 0.443043 | 5.2:+75798022 | None:intergenic |
| CCTATCAGCATTCGGATCAC+TGG | 0.457235 | 5.2:+75797722 | None:intergenic |
| CGAATGCTGATAGGATTAAT+CGG | 0.459876 | 5.2:-75797713 | MS.gene47655:CDS |
| TCAGCTTAAGCTTAGGTGGT+GGG | 0.462412 | 5.2:-75796353 | MS.gene47655:intron |
| TTCAGCTTAAGCTTAGGTGG+TGG | 0.471849 | 5.2:-75796354 | MS.gene47655:intron |
| CCAGTGATCCGAATGCTGAT+AGG | 0.476298 | 5.2:-75797722 | MS.gene47655:CDS |
| TGGACTCACGGTGCTGTGTA+TGG | 0.483242 | 5.2:-75797901 | MS.gene47655:CDS |
| ACTGTCTTCAGCTTAAGCTT+AGG | 0.487679 | 5.2:-75796360 | MS.gene47655:intron |
| CAAACGCCGCCGCAATCGCG+CGG | 0.490314 | 5.2:-75798010 | MS.gene47655:CDS |
| CGATTAATCCTATCAGCATT+CGG | 0.491371 | 5.2:+75797714 | None:intergenic |
| GTCGCTTTAGAAGCACTGTC+TGG | 0.502008 | 5.2:-75796753 | MS.gene47655:CDS |
| CATGTGTATCGTTGTTTCCG+GGG | 0.512854 | 5.2:+75797970 | None:intergenic |
| CAGCTTAAGCTTAGGTGGTG+GGG | 0.520916 | 5.2:-75796352 | MS.gene47655:CDS |
| CTCTACGCGCTGGTGGCGCG+TGG | 0.524194 | 5.2:-75798068 | MS.gene47655:CDS |
| GCTTAAAGGTGAAATGTCTC+AGG | 0.529462 | 5.2:-75797691 | MS.gene47655:intron |
| ATCTCTTCAAGAAACGCAAA+CGG | 0.535896 | 5.2:+75797852 | None:intergenic |
| GAGGATTTGCCGCGCGATTG+CGG | 0.538753 | 5.2:+75798001 | None:intergenic |
| GTCTTCAGCTTAAGCTTAGG+TGG | 0.553802 | 5.2:-75796357 | MS.gene47655:intron |
| CAAATCCTCGAGAAAATCCC+CGG | 0.556101 | 5.2:-75797987 | MS.gene47655:CDS |
| TTAGAAGCACTGTCTGGTGG+AGG | 0.558410 | 5.2:-75796747 | MS.gene47655:CDS |
| GCTGGTGGCGCGTGGAACGG+TGG | 0.578906 | 5.2:-75798060 | MS.gene47655:CDS |
| GATAAAGCTGCTAATATGCA+AGG | 0.579433 | 5.2:-75796805 | MS.gene47655:CDS |
| ATGTTTCGTATTCACAAGAT+CGG | 0.583230 | 5.2:-75797950 | MS.gene47655:CDS |
| GATTTGCCGCGCGATTGCGG+CGG | 0.588839 | 5.2:+75798004 | None:intergenic |
| GCTTTAGAAGCACTGTCTGG+TGG | 0.589136 | 5.2:-75796750 | MS.gene47655:CDS |
| TGATAGATTGGAATTGCTGG+TGG | 0.593278 | 5.2:-75796827 | MS.gene47655:CDS |
| GAAACGAACCGATGGACTCA+CGG | 0.607839 | 5.2:-75797913 | MS.gene47655:CDS |
| ACACAGCACCGTGAGTCCAT+CGG | 0.624165 | 5.2:+75797905 | None:intergenic |
| TTTCACGTGAAACGAACCGA+TGG | 0.628828 | 5.2:-75797921 | MS.gene47655:CDS |
| GTGGTTCTAGCAGAGTTCAC+CGG | 0.634337 | 5.2:-75798041 | MS.gene47655:CDS |
| GGGTATACTCTACGCGCTGG+TGG | 0.634486 | 5.2:-75798075 | MS.gene47655:CDS |
| AATGGGTATACTCTACGCGC+TGG | 0.637918 | 5.2:-75798078 | MS.gene47655:CDS |
| TGTAAGGAGTTATGGACGTG+CGG | 0.656982 | 5.2:-75797817 | MS.gene47655:CDS |
| TTCTTGAAGAGATTCATCAG+AGG | 0.658130 | 5.2:-75797842 | MS.gene47655:CDS |
| TGGCGGATGATAGCGTTGGA+CGG | 0.663803 | 5.2:-75797881 | MS.gene47655:CDS |
| TGTATGGCGGATGATAGCGT+TGG | 0.668509 | 5.2:-75797885 | MS.gene47655:CDS |
| ACTCACGGTGCTGTGTATGG+CGG | 0.734585 | 5.2:-75797898 | MS.gene47655:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGATTTTGATATGTTT+GGG | - | chr5.2:75797109-75797128 | MS.gene47655:intron | 15.0% |
| !!! | GTTTCTATTTTTTATTTTAC+AGG | - | chr5.2:75797528-75797547 | MS.gene47655:intron | 15.0% |
| !! | AATCACATTTATTAATCTCT+AGG | + | chr5.2:75797972-75797991 | None:intergenic | 20.0% |
| !! | ATCACATTTATTAATCTCTA+GGG | + | chr5.2:75797971-75797990 | None:intergenic | 20.0% |
| !! | GACAAATATTCTATCTTTAT+AGG | + | chr5.2:75797827-75797846 | None:intergenic | 20.0% |
| !! | GTTGAAAATTTGAATTTACA+CGG | - | chr5.2:75796837-75796856 | MS.gene47655:CDS | 20.0% |
| !!! | AAAATCAATTTTAAATCTGC+AGG | + | chr5.2:75797235-75797254 | None:intergenic | 20.0% |
| !!! | AATTGATTTTGATATGTTTG+GGG | - | chr5.2:75797110-75797129 | MS.gene47655:intron | 20.0% |
| !!! | AGAAAATATTGACAAAGTTT+TGG | - | chr5.2:75797567-75797586 | MS.gene47655:intron | 20.0% |
| !!! | GAAATTGATTTTGATATGTT+TGG | - | chr5.2:75797108-75797127 | MS.gene47655:intron | 20.0% |
| !!! | TATGAATGATGAATTTTCTA+GGG | - | chr5.2:75796652-75796671 | MS.gene47655:intron | 20.0% |
| !!! | TCTGTTTTAATTATCATTCT+TGG | - | chr5.2:75797887-75797906 | MS.gene47655:CDS | 20.0% |
| ! | AAGATAGAATATTTGTCTCT+TGG | - | chr5.2:75797830-75797849 | MS.gene47655:CDS | 25.0% |
| ! | AATTAAAACAGACGAAGAAA+AGG | + | chr5.2:75797879-75797898 | None:intergenic | 25.0% |
| ! | AGATAGAATATTTGTCTCTT+GGG | - | chr5.2:75797831-75797850 | MS.gene47655:CDS | 25.0% |
| ! | CTTTATAGGTTCAACTTATA+TGG | + | chr5.2:75797813-75797832 | None:intergenic | 25.0% |
| ! | GAATAATGTTTGTCAAACTT+AGG | - | chr5.2:75797478-75797497 | MS.gene47655:intron | 25.0% |
| ! | GTTGTTTGTAAGTTTATGTT+TGG | + | chr5.2:75797411-75797430 | None:intergenic | 25.0% |
| !! | ATAGGATTTGTCAATTTTCA+TGG | - | chr5.2:75797918-75797937 | MS.gene47655:CDS | 25.0% |
| !! | CTATGAATGATGAATTTTCT+AGG | - | chr5.2:75796651-75796670 | MS.gene47655:intron | 25.0% |
| !! | TAGTTATGTTCTTCTTTTTG+TGG | - | chr5.2:75796759-75796778 | MS.gene47655:CDS | 25.0% |
| !! | TCTAGTTTACAAAATTGGAT+TGG | - | chr5.2:75796906-75796925 | MS.gene47655:intron | 25.0% |
| !! | TCTGATCTAGTTTACAAAAT+TGG | - | chr5.2:75796901-75796920 | MS.gene47655:intron | 25.0% |
| !!! | AAATTGATTTTGCTATGTGT+TGG | - | chr5.2:75797244-75797263 | MS.gene47655:intron | 25.0% |
| ATGTTTCGTATTCACAAGAT+CGG | - | chr5.2:75796474-75796493 | MS.gene47655:intron | 30.0% | |
| ! | AGCTTTTGTCAAGATTATGA+TGG | - | chr5.2:75796990-75797009 | MS.gene47655:intron | 30.0% |
| !!! | ATTGACAAAGTTTTGGATAG+AGG | - | chr5.2:75797574-75797593 | MS.gene47655:intron | 30.0% |
| AAGTCAGAATCAAACTCTAG+AGG | + | chr5.2:75797305-75797324 | None:intergenic | 35.0% | |
| AGATTCATCAGAGGTTTGTA+AGG | - | chr5.2:75796591-75796610 | MS.gene47655:intron | 35.0% | |
| AGTCAAAAGTGATTCTGTAG+TGG | - | chr5.2:75797084-75797103 | MS.gene47655:intron | 35.0% | |
| ATCTCTTCAAGAAACGCAAA+CGG | + | chr5.2:75796575-75796594 | None:intergenic | 35.0% | |
| CGAATGCTGATAGGATTAAT+CGG | - | chr5.2:75796711-75796730 | MS.gene47655:intron | 35.0% | |
| CGATTAATCCTATCAGCATT+CGG | + | chr5.2:75796713-75796732 | None:intergenic | 35.0% | |
| GATAAAGCTGCTAATATGCA+AGG | - | chr5.2:75797619-75797638 | MS.gene47655:intron | 35.0% | |
| GATGTAAAAAACGCGTTTAG+AGG | + | chr5.2:75797351-75797370 | None:intergenic | 35.0% | |
| TCATTCTTGGCATGATCAAT+AGG | - | chr5.2:75797900-75797919 | MS.gene47655:CDS | 35.0% | |
| TTCTTGAAGAGATTCATCAG+AGG | - | chr5.2:75796582-75796601 | MS.gene47655:intron | 35.0% | |
| TTTGGATAGAGGTGATAGAT+TGG | - | chr5.2:75797585-75797604 | MS.gene47655:intron | 35.0% | |
| ! | AACATGTGTATCGTTGTTTC+CGG | + | chr5.2:75796459-75796478 | None:intergenic | 35.0% |
| ! | GATAGGATTAATCGGCTTAA+AGG | - | chr5.2:75796719-75796738 | MS.gene47655:intron | 35.0% |
| ! | TGCGTGTTTGGATTCATTTT+TGG | - | chr5.2:75797058-75797077 | MS.gene47655:intron | 35.0% |
| !! | GCGTGTTTGGATTCATTTTT+GGG | - | chr5.2:75797059-75797078 | MS.gene47655:intron | 35.0% |
| !! | TATTAATCTCTAGGGTTCGA+AGG | + | chr5.2:75797963-75797982 | None:intergenic | 35.0% |
| !!! | CAGTGAGTTTTGAGAAATCA+CGG | - | chr5.2:75796929-75796948 | MS.gene47655:intron | 35.0% |
| ACTGTCTTCAGCTTAAGCTT+AGG | - | chr5.2:75798064-75798083 | MS.gene47655:CDS | 40.0% | |
| AGGTGATAGATTGGAATTGC+TGG | - | chr5.2:75797594-75797613 | MS.gene47655:intron | 40.0% | |
| CAAACACGCACACATATGTT+TGG | + | chr5.2:75797048-75797067 | None:intergenic | 40.0% | |
| CAAACATATGTGTGCGTGTT+TGG | - | chr5.2:75797046-75797065 | MS.gene47655:intron | 40.0% | |
| CAGAGGTTTGTAAGGAGTTA+TGG | - | chr5.2:75796599-75796618 | MS.gene47655:intron | 40.0% | |
| GCTTAAAGGTGAAATGTCTC+AGG | - | chr5.2:75796733-75796752 | MS.gene47655:CDS | 40.0% | |
| GTTTGGACTGACAGTGAATT+TGG | + | chr5.2:75797031-75797050 | None:intergenic | 40.0% | |
| TGATAGATTGGAATTGCTGG+TGG | - | chr5.2:75797597-75797616 | MS.gene47655:intron | 40.0% | |
| ! | ACATGTGTATCGTTGTTTCC+GGG | + | chr5.2:75796458-75796477 | None:intergenic | 40.0% |
| ! | GTAGCTTTTGCTTGCAATCA+TGG | - | chr5.2:75797189-75797208 | MS.gene47655:intron | 40.0% |
| !!! | TAGGGTTTTGAATCAGCAGA+TGG | - | chr5.2:75796670-75796689 | MS.gene47655:intron | 40.0% |
| !!! | TGAGTTTTGAGAAATCACGG+TGG | - | chr5.2:75796932-75796951 | MS.gene47655:intron | 40.0% |
| CAAACTTAGGAATGTGCCAG+TGG | - | chr5.2:75797491-75797510 | MS.gene47655:intron | 45.0% | |
| CAAATCCTCGAGAAAATCCC+CGG | - | chr5.2:75796437-75796456 | MS.gene47655:intron | 45.0% | |
| GTCTTCAGCTTAAGCTTAGG+TGG | - | chr5.2:75798067-75798086 | MS.gene47655:CDS | 45.0% | |
| TCAGCTTAAGCTTAGGTGGT+GGG | - | chr5.2:75798071-75798090 | MS.gene47655:CDS | 45.0% | |
| TGTAAGGAGTTATGGACGTG+CGG | - | chr5.2:75796607-75796626 | MS.gene47655:intron | 45.0% | |
| TTCAGCTTAAGCTTAGGTGG+TGG | - | chr5.2:75798070-75798089 | MS.gene47655:CDS | 45.0% | |
| TTTCACGTGAAACGAACCGA+TGG | - | chr5.2:75796503-75796522 | MS.gene47655:intron | 45.0% | |
| ! | CATGTGTATCGTTGTTTCCG+GGG | + | chr5.2:75796457-75796476 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAACTTATAAA+CGG | + | chr5.2:75797779-75797798 | None:intergenic | 5.0% |
| ACCTGAGCAAAGACAACCAC+TGG | + | chr5.2:75797510-75797529 | None:intergenic | 50.0% | |
| CAGCTTAAGCTTAGGTGGTG+GGG | - | chr5.2:75798072-75798091 | MS.gene47655:CDS | 50.0% | |
| CCAGTGATCCGAATGCTGAT+AGG | - | chr5.2:75796702-75796721 | MS.gene47655:intron | 50.0% | |
| CCTATCAGCATTCGGATCAC+TGG | + | chr5.2:75796705-75796724 | None:intergenic | 50.0% | |
| ! | GAAACGAACCGATGGACTCA+CGG | - | chr5.2:75796511-75796530 | MS.gene47655:intron | 50.0% |
| ! | TGTTTCCGGGGATTTTCTCG+AGG | + | chr5.2:75796445-75796464 | None:intergenic | 50.0% |
| !! | GCTTTAGAAGCACTGTCTGG+TGG | - | chr5.2:75797674-75797693 | MS.gene47655:intron | 50.0% |
| !! | GTCGCTTTAGAAGCACTGTC+TGG | - | chr5.2:75797671-75797690 | MS.gene47655:intron | 50.0% |
| !! | GTGGTTCTAGCAGAGTTCAC+CGG | - | chr5.2:75796383-75796402 | MS.gene47655:intron | 50.0% |
| !! | TGTATGGCGGATGATAGCGT+TGG | - | chr5.2:75796539-75796558 | MS.gene47655:intron | 50.0% |
| !! | TTAGAAGCACTGTCTGGTGG+AGG | - | chr5.2:75797677-75797696 | MS.gene47655:intron | 50.0% |
| ACACAGCACCGTGAGTCCAT+CGG | + | chr5.2:75796522-75796541 | None:intergenic | 55.0% | |
| GCCAGTGGTTGTCTTTGCTC+AGG | - | chr5.2:75797506-75797525 | MS.gene47655:intron | 55.0% | |
| ! | TGGCGGATGATAGCGTTGGA+CGG | - | chr5.2:75796543-75796562 | MS.gene47655:intron | 55.0% |
| !! | ACTCACGGTGCTGTGTATGG+CGG | - | chr5.2:75796526-75796545 | MS.gene47655:intron | 55.0% |
| !! | GGCGGCGTTTGTTGTTGTTC+CGG | + | chr5.2:75796405-75796424 | None:intergenic | 55.0% |
| !! | TGGACTCACGGTGCTGTGTA+TGG | - | chr5.2:75796523-75796542 | MS.gene47655:intron | 55.0% |
| !!! | TGGACGTGCGGTTTTGACTG+CGG | - | chr5.2:75796619-75796638 | MS.gene47655:intron | 55.0% |
| CTTGGGTCGAGCGAAGCTGT+TGG | - | chr5.2:75797848-75797867 | MS.gene47655:CDS | 60.0% | |
| GAGGATTTGCCGCGCGATTG+CGG | + | chr5.2:75796426-75796445 | None:intergenic | 60.0% | |
| GGGTATACTCTACGCGCTGG+TGG | - | chr5.2:75796349-75796368 | MS.gene47655:CDS | 60.0% | |
| GATTTGCCGCGCGATTGCGG+CGG | + | chr5.2:75796423-75796442 | None:intergenic | 65.0% | |
| CAAACGCCGCCGCAATCGCG+CGG | - | chr5.2:75796414-75796433 | MS.gene47655:intron | 70.0% | |
| ! | CGCGCTGGTGGCGCGTGGAA+CGG | - | chr5.2:75796361-75796380 | MS.gene47655:intron | 75.0% |
| ! | CTCTACGCGCTGGTGGCGCG+TGG | - | chr5.2:75796356-75796375 | MS.gene47655:intron | 75.0% |
| ! | GCTGGTGGCGCGTGGAACGG+TGG | - | chr5.2:75796364-75796383 | MS.gene47655:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 75796347 | 75798099 | 75796347 | ID=MS.gene47655 |
| chr5.2 | mRNA | 75796347 | 75798099 | 75796347 | ID=MS.gene47655.t1;Parent=MS.gene47655 |
| chr5.2 | exon | 75797692 | 75798099 | 75797692 | ID=MS.gene47655.t1.exon1;Parent=MS.gene47655.t1 |
| chr5.2 | CDS | 75797692 | 75798099 | 75797692 | ID=cds.MS.gene47655.t1;Parent=MS.gene47655.t1 |
| chr5.2 | exon | 75796733 | 75796896 | 75796733 | ID=MS.gene47655.t1.exon2;Parent=MS.gene47655.t1 |
| chr5.2 | CDS | 75796733 | 75796896 | 75796733 | ID=cds.MS.gene47655.t1;Parent=MS.gene47655.t1 |
| chr5.2 | exon | 75796347 | 75796371 | 75796347 | ID=MS.gene47655.t1.exon3;Parent=MS.gene47655.t1 |
| chr5.2 | CDS | 75796347 | 75796371 | 75796347 | ID=cds.MS.gene47655.t1;Parent=MS.gene47655.t1 |
| Gene Sequence |
| Protein sequence |
