Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016966.t1 | XP_003617238.1 | 98.5 | 194 | 3 | 0 | 1 | 194 | 1 | 194 | 1.70E-101 | 378.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016966.t1 | O49377 | 81.8 | 192 | 35 | 0 | 1 | 192 | 1 | 192 | 7.1e-88 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016966.t1 | G7K325 | 98.5 | 194 | 3 | 0 | 1 | 194 | 1 | 194 | 1.2e-101 | 378.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016966 | MS.gene70862 | PPI |
| MS.gene016966 | MS.gene004575 | PPI |
| MS.gene55293 | MS.gene016966 | PPI |
| MS.gene073364 | MS.gene016966 | PPI |
| MS.gene77217 | MS.gene016966 | PPI |
| MS.gene88213 | MS.gene016966 | PPI |
| MS.gene70862 | MS.gene016966 | PPI |
| MS.gene035781 | MS.gene016966 | PPI |
| MS.gene016966 | MS.gene53088 | PPI |
| MS.gene072972 | MS.gene016966 | PPI |
| MS.gene66057 | MS.gene016966 | PPI |
| MS.gene73141 | MS.gene016966 | PPI |
| MS.gene00315 | MS.gene016966 | PPI |
| MS.gene65117 | MS.gene016966 | PPI |
| MS.gene47655 | MS.gene016966 | PPI |
| MS.gene064565 | MS.gene016966 | PPI |
| MS.gene016966 | MS.gene029336 | PPI |
| MS.gene66728 | MS.gene016966 | PPI |
| MS.gene70948 | MS.gene016966 | PPI |
| MS.gene78212 | MS.gene016966 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016966.t1 | MTR_5g089370 | 98.454 | 194 | 3 | 0 | 1 | 194 | 1 | 194 | 1.90e-143 | 398 |
| MS.gene016966.t1 | MTR_4g115390 | 63.636 | 198 | 68 | 1 | 1 | 194 | 1 | 198 | 6.60e-97 | 281 |
| MS.gene016966.t1 | MTR_4g052550 | 59.474 | 190 | 77 | 0 | 1 | 190 | 1 | 190 | 2.17e-89 | 261 |
| MS.gene016966.t1 | MTR_1g111890 | 36.866 | 217 | 115 | 3 | 2 | 197 | 5 | 220 | 1.17e-47 | 156 |
| MS.gene016966.t1 | MTR_4g022570 | 40.000 | 190 | 111 | 3 | 3 | 190 | 6 | 194 | 2.01e-46 | 152 |
| MS.gene016966.t1 | MTR_7g058900 | 38.947 | 190 | 113 | 3 | 3 | 190 | 6 | 194 | 7.88e-46 | 151 |
| MS.gene016966.t1 | MTR_1g047720 | 38.021 | 192 | 116 | 3 | 3 | 192 | 6 | 196 | 1.27e-45 | 150 |
| MS.gene016966.t1 | MTR_2g028790 | 38.421 | 190 | 114 | 3 | 3 | 190 | 10 | 198 | 7.89e-44 | 145 |
| MS.gene016966.t1 | MTR_4g083490 | 37.368 | 190 | 116 | 3 | 3 | 190 | 8 | 196 | 4.86e-43 | 144 |
| MS.gene016966.t1 | MTR_2g436870 | 36.923 | 195 | 120 | 3 | 4 | 196 | 7 | 200 | 1.04e-40 | 137 |
| MS.gene016966.t1 | MTR_7g058640 | 34.555 | 191 | 122 | 3 | 2 | 190 | 5 | 194 | 1.25e-36 | 127 |
| MS.gene016966.t1 | MTR_7g058640 | 35.838 | 173 | 108 | 3 | 2 | 172 | 5 | 176 | 3.60e-32 | 115 |
| MS.gene016966.t1 | MTR_1g047710 | 35.135 | 148 | 80 | 4 | 39 | 184 | 3 | 136 | 3.47e-26 | 98.2 |
| MS.gene016966.t1 | MTR_4g022470 | 46.154 | 104 | 52 | 3 | 66 | 166 | 14 | 116 | 8.43e-24 | 91.3 |
| MS.gene016966.t1 | MTR_7g058640 | 32.759 | 116 | 76 | 2 | 77 | 190 | 1 | 116 | 2.23e-18 | 77.8 |
| MS.gene016966.t1 | MTR_4g105490 | 23.841 | 151 | 111 | 2 | 28 | 178 | 45 | 191 | 7.40e-13 | 64.7 |
| MS.gene016966.t1 | MTR_4g105490 | 25.581 | 129 | 94 | 1 | 50 | 178 | 56 | 182 | 2.33e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016966.t1 | AT4G32150 | 82.011 | 189 | 34 | 0 | 1 | 189 | 1 | 189 | 2.50e-119 | 337 |
| MS.gene016966.t1 | AT5G11150 | 76.410 | 195 | 45 | 1 | 1 | 194 | 1 | 195 | 4.69e-118 | 334 |
| MS.gene016966.t1 | AT5G11150 | 76.410 | 195 | 45 | 1 | 1 | 194 | 1 | 195 | 7.67e-118 | 334 |
| MS.gene016966.t1 | AT2G25340 | 79.894 | 189 | 38 | 0 | 1 | 189 | 1 | 189 | 1.78e-117 | 332 |
| MS.gene016966.t1 | AT5G22360 | 58.974 | 195 | 79 | 1 | 1 | 194 | 1 | 195 | 9.59e-90 | 262 |
| MS.gene016966.t1 | AT2G33120 | 39.474 | 190 | 112 | 3 | 3 | 190 | 6 | 194 | 4.40e-46 | 151 |
| MS.gene016966.t1 | AT3G54300 | 34.562 | 217 | 120 | 3 | 2 | 197 | 5 | 220 | 2.50e-45 | 150 |
| MS.gene016966.t1 | AT3G54300 | 34.562 | 217 | 120 | 3 | 2 | 197 | 5 | 220 | 2.50e-45 | 150 |
| MS.gene016966.t1 | AT3G54300 | 34.562 | 217 | 120 | 3 | 2 | 197 | 5 | 220 | 2.50e-45 | 150 |
| MS.gene016966.t1 | AT1G04760 | 36.735 | 196 | 121 | 3 | 3 | 196 | 6 | 200 | 5.23e-45 | 149 |
| MS.gene016966.t1 | AT1G04760 | 36.735 | 196 | 121 | 3 | 3 | 196 | 6 | 200 | 5.23e-45 | 149 |
| MS.gene016966.t1 | AT1G04750 | 38.947 | 190 | 113 | 3 | 3 | 190 | 6 | 194 | 6.59e-45 | 148 |
| MS.gene016966.t1 | AT2G32670 | 38.421 | 190 | 114 | 3 | 3 | 190 | 71 | 259 | 1.23e-43 | 147 |
| MS.gene016966.t1 | AT2G33120 | 37.374 | 198 | 113 | 4 | 3 | 190 | 6 | 202 | 8.02e-43 | 143 |
| MS.gene016966.t1 | AT4G15780 | 35.135 | 185 | 111 | 3 | 4 | 186 | 7 | 184 | 1.93e-36 | 125 |
| MS.gene016966.t1 | AT2G33110 | 36.269 | 193 | 110 | 7 | 3 | 190 | 6 | 190 | 2.82e-32 | 116 |
| MS.gene016966.t1 | AT2G33110 | 38.509 | 161 | 92 | 4 | 2 | 158 | 5 | 162 | 1.79e-30 | 110 |
| MS.gene016966.t1 | AT1G04750 | 36.207 | 116 | 72 | 2 | 77 | 190 | 1 | 116 | 4.09e-22 | 87.8 |
| MS.gene016966.t1 | AT1G04750 | 36.207 | 116 | 72 | 2 | 77 | 190 | 1 | 116 | 4.09e-22 | 87.8 |
| MS.gene016966.t1 | AT1G04750 | 36.207 | 116 | 72 | 2 | 77 | 190 | 1 | 116 | 4.09e-22 | 87.8 |
| MS.gene016966.t1 | AT2G33120 | 44.262 | 61 | 34 | 0 | 130 | 190 | 52 | 112 | 1.10e-12 | 63.2 |
| MS.gene016966.t1 | AT5G58060 | 22.436 | 156 | 117 | 2 | 28 | 183 | 45 | 196 | 7.19e-11 | 59.3 |
Find 46 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGTGTGTATCGTTGTTTC+CGG | 0.244994 | 5.1:-70656486 | None:intergenic |
| AGAAAATATTGATAAAGTTT+TGG | 0.259450 | 5.1:+70658025 | MS.gene016966:CDS |
| GATAGGATTAATCGGCTTAA+AGG | 0.299245 | 5.1:+70656749 | MS.gene016966:CDS |
| CAGAGGTTTGTAAGGAGTTA+TGG | 0.338003 | 5.1:+70656629 | MS.gene016966:CDS |
| AGATTCATCAGAGGTTTGTA+AGG | 0.404505 | 5.1:+70656621 | MS.gene016966:CDS |
| AGGTGATAGATTGGAATTGC+TGG | 0.413308 | 5.1:+70658052 | MS.gene016966:CDS |
| TTTGGATAGAGGTGATAGAT+TGG | 0.413502 | 5.1:+70658043 | MS.gene016966:CDS |
| CGCGCTGGTGGCGCGTGGAA+CGG | 0.419354 | 5.1:+70656391 | MS.gene016966:CDS |
| ACGTGTGTATCGTTGTTTCC+GGG | 0.420034 | 5.1:-70656485 | None:intergenic |
| GGCGGCGTTTGTTGTTGTTC+CGG | 0.443043 | 5.1:-70656432 | None:intergenic |
| CCTATCAGCATTCGGATCAC+TGG | 0.457235 | 5.1:-70656732 | None:intergenic |
| CGAATGCTGATAGGATTAAT+CGG | 0.459876 | 5.1:+70656741 | MS.gene016966:CDS |
| CCAGTGATCCGAATGCTGAT+AGG | 0.476298 | 5.1:+70656732 | MS.gene016966:CDS |
| TGGACTCACGGTGCTGTGTA+TGG | 0.483242 | 5.1:+70656553 | MS.gene016966:CDS |
| ACTATCTTCAGCTTAAGCTT+AGG | 0.484074 | 5.1:+70658517 | MS.gene016966:intron |
| CAAACGCCGCCGCAATCGCG+CGG | 0.490314 | 5.1:+70656444 | MS.gene016966:CDS |
| CGATTAATCCTATCAGCATT+CGG | 0.491371 | 5.1:-70656740 | None:intergenic |
| GTCGCTTTAGAAGCACTGTC+TGG | 0.502008 | 5.1:+70658129 | MS.gene016966:CDS |
| TCAGCTTAAGCTTAGGTGGT+GGG | 0.512465 | 5.1:+70658524 | MS.gene016966:intron |
| CAGCTTAAGCTTAGGTGGTG+GGG | 0.520916 | 5.1:+70658525 | MS.gene016966:intron |
| CTCTACGCGCTGGTGGCGCG+TGG | 0.524194 | 5.1:+70656386 | MS.gene016966:CDS |
| GCTTAAAGGTGAAATGTCTC+AGG | 0.529462 | 5.1:+70656763 | MS.gene016966:CDS |
| TTCAGCTTAAGCTTAGGTGG+TGG | 0.529529 | 5.1:+70658523 | MS.gene016966:intron |
| ATCTCTTCAAGAAACGCAAA+CGG | 0.535896 | 5.1:-70656602 | None:intergenic |
| GAGGATTTGCCGCGCGATTG+CGG | 0.538753 | 5.1:-70656453 | None:intergenic |
| CGTGTGTATCGTTGTTTCCG+GGG | 0.552205 | 5.1:-70656484 | None:intergenic |
| ATCTTCAGCTTAAGCTTAGG+TGG | 0.555342 | 5.1:+70658520 | MS.gene016966:intron |
| CAAATCCTCGAGAAAATCCC+CGG | 0.556101 | 5.1:+70656467 | MS.gene016966:CDS |
| TTAGAAGCACTGTCTGGTGG+AGG | 0.558410 | 5.1:+70658135 | MS.gene016966:CDS |
| GCTGGTGGCGCGTGGAACGG+TGG | 0.578906 | 5.1:+70656394 | MS.gene016966:CDS |
| GATAAAGCTGCTAATATGCA+AGG | 0.579433 | 5.1:+70658077 | MS.gene016966:CDS |
| GATTTGCCGCGCGATTGCGG+CGG | 0.588839 | 5.1:-70656450 | None:intergenic |
| GCTTTAGAAGCACTGTCTGG+TGG | 0.589136 | 5.1:+70658132 | MS.gene016966:CDS |
| TGATAGATTGGAATTGCTGG+TGG | 0.593278 | 5.1:+70658055 | MS.gene016966:CDS |
| GAAACGAACCGATGGACTCA+CGG | 0.607839 | 5.1:+70656541 | MS.gene016966:CDS |
| ACACAGCACCGTGAGTCCAT+CGG | 0.624165 | 5.1:-70656549 | None:intergenic |
| TTTCACGTGAAACGAACCGA+TGG | 0.628828 | 5.1:+70656533 | MS.gene016966:CDS |
| ACGTATCGTATTCACAAGAT+CGG | 0.630773 | 5.1:+70656504 | MS.gene016966:CDS |
| GTGGTTCTAGCAGAGTTCAC+CGG | 0.634337 | 5.1:+70656413 | MS.gene016966:CDS |
| GGGTATACTCTACGCGCTGG+TGG | 0.634486 | 5.1:+70656379 | MS.gene016966:CDS |
| AATGGGTATACTCTACGCGC+TGG | 0.637918 | 5.1:+70656376 | None:intergenic |
| TGTAAGGAGTTATGGACGTG+CGG | 0.656982 | 5.1:+70656637 | MS.gene016966:CDS |
| TTCTTGAAGAGATTCATCAG+AGG | 0.658130 | 5.1:+70656612 | MS.gene016966:CDS |
| TGGCGGATGATAGCGTTGGA+CGG | 0.663803 | 5.1:+70656573 | MS.gene016966:CDS |
| TGTATGGCGGATGATAGCGT+TGG | 0.668509 | 5.1:+70656569 | MS.gene016966:CDS |
| ACTCACGGTGCTGTGTATGG+CGG | 0.734585 | 5.1:+70656556 | MS.gene016966:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAATAACAACATAGAT+TGG | + | chr5.1:70657688-70657707 | MS.gene016966:intron | 15.0% |
| !!! | AAATTGATTTTGATATGTTT+GGG | + | chr5.1:70657156-70657175 | MS.gene016966:intron | 15.0% |
| !!! | AGAAAATATTGATAAAGTTT+TGG | + | chr5.1:70658025-70658044 | MS.gene016966:CDS | 15.0% |
| !! | GTTGGAAATATATAGAAAAA+TGG | + | chr5.1:70657581-70657600 | MS.gene016966:intron | 20.0% |
| !!! | AAAATCAATTTTAAATCTGC+AGG | - | chr5.1:70657282-70657301 | None:intergenic | 20.0% |
| !!! | AATTGATTTTGATATGTTTG+GGG | + | chr5.1:70657157-70657176 | MS.gene016966:intron | 20.0% |
| !!! | GAAATTGATTTTGATATGTT+TGG | + | chr5.1:70657155-70657174 | MS.gene016966:intron | 20.0% |
| !!! | GTAACATCTTTTTATTAAAC+CGG | - | chr5.1:70656889-70656908 | None:intergenic | 20.0% |
| !!! | GTTTCTATTTTTTTTCTTAC+AGG | + | chr5.1:70657986-70658005 | MS.gene016966:intron | 20.0% |
| !!! | TAACATCTTTTTATTAAACC+GGG | - | chr5.1:70656888-70656907 | None:intergenic | 20.0% |
| !!! | TATGAATGATGAATTTTCTA+GGG | + | chr5.1:70656682-70656701 | MS.gene016966:CDS | 20.0% |
| !!! | TCTGTTTTAATTATCATTCT+TGG | + | chr5.1:70658343-70658362 | MS.gene016966:intron | 20.0% |
| ! | AAATAGAAACAAACACACTT+AGG | + | chr5.1:70657507-70657526 | MS.gene016966:intron | 25.0% |
| ! | AATTAAAACAGACGAAGAAA+AGG | - | chr5.1:70658335-70658354 | None:intergenic | 25.0% |
| ! | AATTAAGTGTATGTTTCGAT+TGG | + | chr5.1:70656948-70656967 | MS.gene016966:intron | 25.0% |
| ! | ATCACATTTATTAATCTCTG+AGG | - | chr5.1:70658428-70658447 | None:intergenic | 25.0% |
| ! | CATTATTCTGATTGAACTTA+AGG | - | chr5.1:70657924-70657943 | None:intergenic | 25.0% |
| ! | CTTTATAGGTTCAACTTATA+TGG | - | chr5.1:70658269-70658288 | None:intergenic | 25.0% |
| ! | GAATAATGTTTGTCAAACTT+AGG | + | chr5.1:70657936-70657955 | MS.gene016966:intron | 25.0% |
| ! | GACAAAGATTCTATCTTTAT+AGG | - | chr5.1:70658283-70658302 | None:intergenic | 25.0% |
| ! | GTTGAAAATTTGAATTTACC+CGG | + | chr5.1:70656867-70656886 | MS.gene016966:intron | 25.0% |
| ! | TCACATTTATTAATCTCTGA+GGG | - | chr5.1:70658427-70658446 | None:intergenic | 25.0% |
| !! | ATAGGATTTGTCAATTTTCA+TGG | + | chr5.1:70658374-70658393 | MS.gene016966:intron | 25.0% |
| !! | CTATGAATGATGAATTTTCT+AGG | + | chr5.1:70656681-70656700 | MS.gene016966:CDS | 25.0% |
| !!! | ATTGATAAAGTTTTGGATAG+AGG | + | chr5.1:70658032-70658051 | MS.gene016966:CDS | 25.0% |
| AAGAAATAGAAGACATTGAG+AGG | - | chr5.1:70657837-70657856 | None:intergenic | 30.0% | |
| AAGATAGAATCTTTGTCTCT+TGG | + | chr5.1:70658286-70658305 | MS.gene016966:intron | 30.0% | |
| AATAAAAAATCCCCCTCATT+TGG | - | chr5.1:70657783-70657802 | None:intergenic | 30.0% | |
| AGATAGAATCTTTGTCTCTT+GGG | + | chr5.1:70658287-70658306 | MS.gene016966:intron | 30.0% | |
| ATAAAAAATCCCCCTCATTT+GGG | - | chr5.1:70657782-70657801 | None:intergenic | 30.0% | |
| GAACTCAAAAATTGTATTGG+GGG | - | chr5.1:70657758-70657777 | None:intergenic | 30.0% | |
| GGAACTCAAAAATTGTATTG+GGG | - | chr5.1:70657759-70657778 | None:intergenic | 30.0% | |
| GGGAACTCAAAAATTGTATT+GGG | - | chr5.1:70657760-70657779 | None:intergenic | 30.0% | |
| GTTGTTCGTAAGTTTATGTT+TGG | - | chr5.1:70657471-70657490 | None:intergenic | 30.0% | |
| ! | AGCTTTTGTCAAGATTATGA+TGG | + | chr5.1:70657032-70657051 | MS.gene016966:intron | 30.0% |
| !! | ATTGAACTTAAGGCTTTGTT+TGG | - | chr5.1:70657914-70657933 | None:intergenic | 30.0% |
| !! | TTGAACTTAAGGCTTTGTTT+GGG | - | chr5.1:70657913-70657932 | None:intergenic | 30.0% |
| AAGTCAGAATCAAACTCTAG+AGG | - | chr5.1:70657365-70657384 | None:intergenic | 35.0% | |
| ACGTATCGTATTCACAAGAT+CGG | + | chr5.1:70656504-70656523 | MS.gene016966:CDS | 35.0% | |
| ACTATCTTCAGCTTAAGCTT+AGG | + | chr5.1:70658517-70658536 | MS.gene016966:intron | 35.0% | |
| AGATTCATCAGAGGTTTGTA+AGG | + | chr5.1:70656621-70656640 | MS.gene016966:CDS | 35.0% | |
| AGTCAAAAGTGATTCTGTAG+TGG | + | chr5.1:70657126-70657145 | MS.gene016966:intron | 35.0% | |
| ATCTCTTCAAGAAACGCAAA+CGG | - | chr5.1:70656605-70656624 | None:intergenic | 35.0% | |
| CGAATGCTGATAGGATTAAT+CGG | + | chr5.1:70656741-70656760 | MS.gene016966:CDS | 35.0% | |
| CGATTAATCCTATCAGCATT+CGG | - | chr5.1:70656743-70656762 | None:intergenic | 35.0% | |
| GATAAAGCTGCTAATATGCA+AGG | + | chr5.1:70658077-70658096 | MS.gene016966:CDS | 35.0% | |
| GATGTAAAAAACGCGTTTAG+AGG | - | chr5.1:70657411-70657430 | None:intergenic | 35.0% | |
| GGGGAACTCAAAAATTGTAT+TGG | - | chr5.1:70657761-70657780 | None:intergenic | 35.0% | |
| TAAAAAATCCCCCTCATTTG+GGG | - | chr5.1:70657781-70657800 | None:intergenic | 35.0% | |
| TCAAAAATTGTATTGGGGGA+GGG | - | chr5.1:70657754-70657773 | None:intergenic | 35.0% | |
| TCATTCTTGGCATGATCAAT+AGG | + | chr5.1:70658356-70658375 | MS.gene016966:intron | 35.0% | |
| TTCTTGAAGAGATTCATCAG+AGG | + | chr5.1:70656612-70656631 | MS.gene016966:CDS | 35.0% | |
| TTTGGATAGAGGTGATAGAT+TGG | + | chr5.1:70658043-70658062 | MS.gene016966:CDS | 35.0% | |
| ! | GATAGGATTAATCGGCTTAA+AGG | + | chr5.1:70656749-70656768 | MS.gene016966:CDS | 35.0% |
| !! | AAACACACTTAGGCTTTGTT+TGG | + | chr5.1:70657517-70657536 | MS.gene016966:intron | 35.0% |
| !! | AACACACTTAGGCTTTGTTT+GGG | + | chr5.1:70657518-70657537 | MS.gene016966:intron | 35.0% |
| !! | GCGTGTTTGGATTCATTTTT+AGG | + | chr5.1:70657101-70657120 | MS.gene016966:intron | 35.0% |
| !!! | CAGTGAGTTTTGAGAAATCA+CGG | + | chr5.1:70656971-70656990 | MS.gene016966:intron | 35.0% |
| AAAAAATCCCCCTCATTTGG+GGG | - | chr5.1:70657780-70657799 | None:intergenic | 40.0% | |
| AGGTGATAGATTGGAATTGC+TGG | + | chr5.1:70658052-70658071 | MS.gene016966:CDS | 40.0% | |
| ATAGAAGACATTGAGAGGAG+AGG | - | chr5.1:70657832-70657851 | None:intergenic | 40.0% | |
| ATCTTCAGCTTAAGCTTAGG+TGG | + | chr5.1:70658520-70658539 | MS.gene016966:intron | 40.0% | |
| CAAACACGCACACATATGTT+TGG | - | chr5.1:70657090-70657109 | None:intergenic | 40.0% | |
| CAAACATATGTGTGCGTGTT+TGG | + | chr5.1:70657088-70657107 | MS.gene016966:intron | 40.0% | |
| CAGAGGTTTGTAAGGAGTTA+TGG | + | chr5.1:70656629-70656648 | MS.gene016966:CDS | 40.0% | |
| CTCAAAAATTGTATTGGGGG+AGG | - | chr5.1:70657755-70657774 | None:intergenic | 40.0% | |
| GCTTAAAGGTGAAATGTCTC+AGG | + | chr5.1:70656763-70656782 | MS.gene016966:CDS | 40.0% | |
| GTTTGGACTGACAGTGAATT+TGG | - | chr5.1:70657073-70657092 | None:intergenic | 40.0% | |
| TAGAAGACATTGAGAGGAGA+GGG | - | chr5.1:70657831-70657850 | None:intergenic | 40.0% | |
| TGATAGATTGGAATTGCTGG+TGG | + | chr5.1:70658055-70658074 | MS.gene016966:CDS | 40.0% | |
| ! | ATTAATCTCTGAGGGTTCGA+AGG | - | chr5.1:70658419-70658438 | None:intergenic | 40.0% |
| ! | GTAGCTTTTGCTTGCAATCA+TGG | + | chr5.1:70657236-70657255 | MS.gene016966:intron | 40.0% |
| ! | TACGTGTGTATCGTTGTTTC+CGG | - | chr5.1:70656489-70656508 | None:intergenic | 40.0% |
| !! | TAAGGCTTTGTTTGGGAGTT+TGG | - | chr5.1:70657906-70657925 | None:intergenic | 40.0% |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | + | chr5.1:70657525-70657544 | MS.gene016966:intron | 40.0% |
| !!! | GAGGGTTTTGGAAAAAAGGA+AGG | - | chr5.1:70657869-70657888 | None:intergenic | 40.0% |
| !!! | TAGGGTTTTGAATCAGCAGA+TGG | + | chr5.1:70656700-70656719 | MS.gene016966:CDS | 40.0% |
| !!! | TGAGTTTTGAGAAATCACGG+TGG | + | chr5.1:70656974-70656993 | MS.gene016966:intron | 40.0% |
| !!! | TTTTGAGTTCCCCCAAATGA+GGG | + | chr5.1:70657768-70657787 | MS.gene016966:intron | 40.0% |
| !!! | TTTTTGAGTTCCCCCAAATG+AGG | + | chr5.1:70657767-70657786 | MS.gene016966:intron | 40.0% |
| CAAACTTAGGAATGTGCCAG+TGG | + | chr5.1:70657949-70657968 | MS.gene016966:intron | 45.0% | |
| CAAATCCTCGAGAAAATCCC+CGG | + | chr5.1:70656467-70656486 | MS.gene016966:CDS | 45.0% | |
| GGAAAAAAGGAAGGAGCAAG+TGG | - | chr5.1:70657860-70657879 | None:intergenic | 45.0% | |
| TCAGCTTAAGCTTAGGTGGT+GGG | + | chr5.1:70658524-70658543 | MS.gene016966:intron | 45.0% | |
| TGTAAGGAGTTATGGACGTG+CGG | + | chr5.1:70656637-70656656 | MS.gene016966:CDS | 45.0% | |
| TTCAGCTTAAGCTTAGGTGG+TGG | + | chr5.1:70658523-70658542 | MS.gene016966:intron | 45.0% | |
| TTTCACGTGAAACGAACCGA+TGG | + | chr5.1:70656533-70656552 | MS.gene016966:CDS | 45.0% | |
| ! | ACGTGTGTATCGTTGTTTCC+GGG | - | chr5.1:70656488-70656507 | None:intergenic | 45.0% |
| ! | ATTGTATTGGGGGAGGGTTT+TGG | - | chr5.1:70657748-70657767 | None:intergenic | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr5.1:70657530-70657549 | MS.gene016966:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr5.1:70657549-70657530 | None:intergenic | 45.0% |
| ! | TTGTATTGGGGGAGGGTTTT+GGG | - | chr5.1:70657747-70657766 | None:intergenic | 45.0% |
| ! | TTTGAGTTCCCCCAAATGAG+GGG | + | chr5.1:70657769-70657788 | MS.gene016966:intron | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr5.1:70657529-70657548 | MS.gene016966:intron | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr5.1:70657548-70657529 | None:intergenic | 45.0% |
| !!! | AGGGGAGGGTTTTGGAAAAA+AGG | - | chr5.1:70657873-70657892 | None:intergenic | 45.0% |
| !! | TAAAAAAAAAAACTTATAAA+CGG | - | chr5.1:70658237-70658256 | None:intergenic | 5.0% |
| ACATTGAGAGGAGAGGGCTT+TGG | - | chr5.1:70657825-70657844 | None:intergenic | 50.0% | |
| ACCTGAGCAAAGACAACCAC+TGG | - | chr5.1:70657968-70657987 | None:intergenic | 50.0% | |
| CAGCTTAAGCTTAGGTGGTG+GGG | + | chr5.1:70658525-70658544 | MS.gene016966:intron | 50.0% | |
| CCAGTGATCCGAATGCTGAT+AGG | + | chr5.1:70656732-70656751 | MS.gene016966:CDS | 50.0% | |
| CCTATCAGCATTCGGATCAC+TGG | - | chr5.1:70656735-70656754 | None:intergenic | 50.0% | |
| TTGAGTTCCCCCAAATGAGG+GGG | + | chr5.1:70657770-70657789 | MS.gene016966:intron | 50.0% | |
| ! | CGTGTGTATCGTTGTTTCCG+GGG | - | chr5.1:70656487-70656506 | None:intergenic | 50.0% |
| ! | GAAACGAACCGATGGACTCA+CGG | + | chr5.1:70656541-70656560 | MS.gene016966:CDS | 50.0% |
| ! | TGTATTGGGGGAGGGTTTTG+GGG | - | chr5.1:70657746-70657765 | None:intergenic | 50.0% |
| ! | TGTTTCCGGGGATTTTCTCG+AGG | - | chr5.1:70656475-70656494 | None:intergenic | 50.0% |
| !! | GCTTTAGAAGCACTGTCTGG+TGG | + | chr5.1:70658132-70658151 | MS.gene016966:CDS | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr5.1:70657528-70657547 | MS.gene016966:intron | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr5.1:70657547-70657528 | None:intergenic | 50.0% |
| !! | GTCGCTTTAGAAGCACTGTC+TGG | + | chr5.1:70658129-70658148 | MS.gene016966:CDS | 50.0% |
| !! | GTGGTTCTAGCAGAGTTCAC+CGG | + | chr5.1:70656413-70656432 | MS.gene016966:CDS | 50.0% |
| !! | TGTATGGCGGATGATAGCGT+TGG | + | chr5.1:70656569-70656588 | MS.gene016966:CDS | 50.0% |
| !! | TTAGAAGCACTGTCTGGTGG+AGG | + | chr5.1:70658135-70658154 | MS.gene016966:CDS | 50.0% |
| ACACAGCACCGTGAGTCCAT+CGG | - | chr5.1:70656552-70656571 | None:intergenic | 55.0% | |
| GCCAGTGGTTGTCTTTGCTC+AGG | + | chr5.1:70657964-70657983 | MS.gene016966:intron | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr5.1:70657534-70657553 | MS.gene016966:intron | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | - | chr5.1:70657553-70657534 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr5.1:70657533-70657552 | MS.gene016966:intron | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | - | chr5.1:70657552-70657533 | None:intergenic | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | + | chr5.1:70657535-70657554 | MS.gene016966:intron | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | - | chr5.1:70657554-70657535 | None:intergenic | 55.0% | |
| ! | TGGCGGATGATAGCGTTGGA+CGG | + | chr5.1:70656573-70656592 | MS.gene016966:CDS | 55.0% |
| ! | TTGAGAGGAGAGGGCTTTGG+AGG | - | chr5.1:70657822-70657841 | None:intergenic | 55.0% |
| !! | ACTCACGGTGCTGTGTATGG+CGG | + | chr5.1:70656556-70656575 | MS.gene016966:CDS | 55.0% |
| !! | GGCGGCGTTTGTTGTTGTTC+CGG | - | chr5.1:70656435-70656454 | None:intergenic | 55.0% |
| !! | GTATTGGGGGAGGGTTTTGG+GGG | - | chr5.1:70657745-70657764 | None:intergenic | 55.0% |
| !! | TGGACTCACGGTGCTGTGTA+TGG | + | chr5.1:70656553-70656572 | MS.gene016966:CDS | 55.0% |
| !!! | AGGGTTTTGGGGGGTAATGG+AGG | - | chr5.1:70657735-70657754 | None:intergenic | 55.0% |
| !!! | GGGTTTTGGGGGGTAATGGA+GGG | - | chr5.1:70657734-70657753 | None:intergenic | 55.0% |
| !!! | TATTGGGGGAGGGTTTTGGG+GGG | - | chr5.1:70657744-70657763 | None:intergenic | 55.0% |
| !!! | TGGACGTGCGGTTTTGACTG+CGG | + | chr5.1:70656649-70656668 | MS.gene016966:CDS | 55.0% |
| CTTGGGTCGAGCGAAGCTGT+TGG | + | chr5.1:70658304-70658323 | MS.gene016966:intron | 60.0% | |
| GAGGATTTGCCGCGCGATTG+CGG | - | chr5.1:70656456-70656475 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAGGGGAA+GGG | + | chr5.1:70657540-70657559 | MS.gene016966:intron | 60.0% | |
| GGGTATACTCTACGCGCTGG+TGG | + | chr5.1:70656379-70656398 | MS.gene016966:CDS | 60.0% | |
| !!! | GGGAGGGTTTTGGGGGGTAA+TGG | - | chr5.1:70657738-70657757 | None:intergenic | 60.0% |
| GAAGGGAGGGGAGGGCTTTG+GGG | + | chr5.1:70657557-70657576 | MS.gene016966:intron | 65.0% | |
| GAGTTTGGAGGGGAGGGGAG+GGG | - | chr5.1:70657891-70657910 | None:intergenic | 65.0% | |
| GATTTGCCGCGCGATTGCGG+CGG | - | chr5.1:70656453-70656472 | None:intergenic | 65.0% | |
| GGAAGGGAGGGGAGGGCTTT+GGG | + | chr5.1:70657556-70657575 | MS.gene016966:intron | 65.0% | |
| GGAGTTTGGAGGGGAGGGGA+AGG | + | chr5.1:70657539-70657558 | MS.gene016966:intron | 65.0% | |
| GGAGTTTGGAGGGGAGGGGA+GGG | - | chr5.1:70657558-70657539 | None:intergenic | 65.0% | |
| TTGGAGGGGAGGGGAAGGGA+GGG | + | chr5.1:70657544-70657563 | MS.gene016966:intron | 65.0% | |
| TTTGGAGGGGAGGGGAAGGG+AGG | + | chr5.1:70657543-70657562 | MS.gene016966:intron | 65.0% | |
| ! | AAGGGAGGGGAGGGCTTTGG+GGG | + | chr5.1:70657558-70657577 | MS.gene016966:intron | 65.0% |
| CAAACGCCGCCGCAATCGCG+CGG | + | chr5.1:70656444-70656463 | MS.gene016966:CDS | 70.0% | |
| GGGAAGGGAGGGGAGGGCTT+TGG | + | chr5.1:70657555-70657574 | MS.gene016966:intron | 70.0% | |
| GGGAGTTTGGAGGGGAGGGG+AGG | - | chr5.1:70657557-70657538 | None:intergenic | 70.0% | |
| TGGAGGGGAGGGGAAGGGAG+GGG | + | chr5.1:70657545-70657564 | MS.gene016966:intron | 70.0% | |
| TTGGAGGGGAGGGGAGGGGA+GGG | - | chr5.1:70657887-70657906 | None:intergenic | 70.0% | |
| TTTGGAGGGGAGGGGAGGGG+AGG | - | chr5.1:70657888-70657907 | None:intergenic | 70.0% | |
| ! | GGGAGGGGAGGGGAGGGTTT+TGG | - | chr5.1:70657881-70657900 | None:intergenic | 70.0% |
| !! | AGGGAGGGGAGGGCTTTGGG+GGG | + | chr5.1:70657559-70657578 | MS.gene016966:intron | 70.0% |
| !! | AGGGGAGGGCTTTGGGGGGT+TGG | + | chr5.1:70657563-70657582 | MS.gene016966:intron | 70.0% |
| AGGGGAGGGGAAGGGAGGGG+AGG | + | chr5.1:70657548-70657567 | MS.gene016966:intron | 75.0% | |
| GGGGAGGGGAAGGGAGGGGA+GGG | + | chr5.1:70657549-70657568 | MS.gene016966:intron | 75.0% | |
| ! | CGCGCTGGTGGCGCGTGGAA+CGG | + | chr5.1:70656391-70656410 | MS.gene016966:CDS | 75.0% |
| ! | CTCTACGCGCTGGTGGCGCG+TGG | + | chr5.1:70656386-70656405 | MS.gene016966:CDS | 75.0% |
| ! | GCTGGTGGCGCGTGGAACGG+TGG | + | chr5.1:70656394-70656413 | MS.gene016966:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 70656377 | 70658552 | 70656377 | ID=MS.gene016966 |
| chr5.1 | mRNA | 70656377 | 70658552 | 70656377 | ID=MS.gene016966.t1;Parent=MS.gene016966 |
| chr5.1 | exon | 70656377 | 70656784 | 70656377 | ID=MS.gene016966.t1.exon1;Parent=MS.gene016966.t1 |
| chr5.1 | CDS | 70656377 | 70656784 | 70656377 | ID=cds.MS.gene016966.t1;Parent=MS.gene016966.t1 |
| chr5.1 | exon | 70658008 | 70658171 | 70658008 | ID=MS.gene016966.t1.exon2;Parent=MS.gene016966.t1 |
| chr5.1 | CDS | 70658008 | 70658171 | 70658008 | ID=cds.MS.gene016966.t1;Parent=MS.gene016966.t1 |
| chr5.1 | exon | 70658528 | 70658552 | 70658528 | ID=MS.gene016966.t1.exon3;Parent=MS.gene016966.t1 |
| chr5.1 | CDS | 70658528 | 70658552 | 70658528 | ID=cds.MS.gene016966.t1;Parent=MS.gene016966.t1 |
| Gene Sequence |
| Protein sequence |
