Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78212.t1 | XP_003622969.1 | 99.1 | 221 | 2 | 0 | 1 | 221 | 1 | 221 | 2.00E-114 | 421.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78212.t1 | O48850 | 82.7 | 220 | 38 | 0 | 1 | 220 | 66 | 285 | 5.9e-99 | 361.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78212.t1 | G7L2A6 | 99.1 | 221 | 2 | 0 | 1 | 221 | 1 | 221 | 1.4e-114 | 421.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78212.t1 | MTR_7g058900 | 99.095 | 221 | 2 | 0 | 1 | 221 | 1 | 221 | 4.02e-164 | 451 |
| MS.gene78212.t1 | MTR_1g047720 | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 5.32e-139 | 388 |
| MS.gene78212.t1 | MTR_4g022570 | 84.018 | 219 | 35 | 0 | 1 | 219 | 1 | 219 | 2.74e-130 | 366 |
| MS.gene78212.t1 | MTR_2g436870 | 70.000 | 220 | 66 | 0 | 1 | 220 | 1 | 220 | 1.67e-120 | 341 |
| MS.gene78212.t1 | MTR_4g083490 | 78.756 | 193 | 41 | 0 | 3 | 195 | 5 | 197 | 1.02e-117 | 334 |
| MS.gene78212.t1 | MTR_2g028790 | 75.130 | 193 | 48 | 0 | 3 | 195 | 7 | 199 | 4.17e-113 | 322 |
| MS.gene78212.t1 | MTR_7g058640 | 71.282 | 195 | 56 | 0 | 1 | 195 | 1 | 195 | 9.81e-105 | 301 |
| MS.gene78212.t1 | MTR_1g111890 | 54.622 | 238 | 89 | 1 | 1 | 219 | 1 | 238 | 8.91e-98 | 284 |
| MS.gene78212.t1 | MTR_7g058640 | 70.930 | 172 | 50 | 0 | 1 | 172 | 1 | 172 | 2.19e-91 | 266 |
| MS.gene78212.t1 | MTR_1g047710 | 80.645 | 124 | 24 | 0 | 64 | 187 | 12 | 135 | 2.43e-72 | 216 |
| MS.gene78212.t1 | MTR_4g022470 | 82.407 | 108 | 19 | 0 | 64 | 171 | 10 | 117 | 3.95e-61 | 187 |
| MS.gene78212.t1 | MTR_7g058640 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.01e-57 | 179 |
| MS.gene78212.t1 | MTR_4g052550 | 37.559 | 213 | 130 | 3 | 5 | 216 | 2 | 212 | 1.92e-48 | 158 |
| MS.gene78212.t1 | MTR_5g089370 | 37.264 | 212 | 130 | 3 | 6 | 216 | 3 | 212 | 7.02e-47 | 154 |
| MS.gene78212.t1 | MTR_4g115390 | 33.333 | 216 | 137 | 3 | 6 | 216 | 3 | 216 | 9.44e-42 | 141 |
| MS.gene78212.t1 | MTR_4g022550 | 85.484 | 62 | 9 | 0 | 158 | 219 | 10 | 71 | 1.87e-20 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78212.t1 | AT1G04760 | 84.091 | 220 | 35 | 0 | 1 | 220 | 1 | 220 | 5.09e-135 | 378 |
| MS.gene78212.t1 | AT1G04760 | 84.091 | 220 | 35 | 0 | 1 | 220 | 1 | 220 | 5.09e-135 | 378 |
| MS.gene78212.t1 | AT2G32670 | 85.000 | 220 | 33 | 0 | 1 | 220 | 66 | 285 | 6.61e-131 | 370 |
| MS.gene78212.t1 | AT2G33120 | 84.615 | 221 | 34 | 0 | 1 | 221 | 1 | 221 | 3.63e-130 | 366 |
| MS.gene78212.t1 | AT1G04750 | 83.105 | 219 | 37 | 0 | 1 | 219 | 1 | 219 | 2.33e-127 | 358 |
| MS.gene78212.t1 | AT2G33120 | 81.223 | 229 | 35 | 1 | 1 | 221 | 1 | 229 | 1.33e-126 | 357 |
| MS.gene78212.t1 | AT3G54300 | 55.649 | 239 | 87 | 1 | 1 | 220 | 1 | 239 | 3.59e-101 | 293 |
| MS.gene78212.t1 | AT3G54300 | 55.649 | 239 | 87 | 1 | 1 | 220 | 1 | 239 | 3.59e-101 | 293 |
| MS.gene78212.t1 | AT3G54300 | 55.649 | 239 | 87 | 1 | 1 | 220 | 1 | 239 | 3.59e-101 | 293 |
| MS.gene78212.t1 | AT2G33110 | 69.683 | 221 | 63 | 1 | 1 | 221 | 1 | 217 | 1.17e-98 | 286 |
| MS.gene78212.t1 | AT4G15780 | 68.715 | 179 | 55 | 1 | 1 | 178 | 1 | 179 | 1.50e-90 | 264 |
| MS.gene78212.t1 | AT2G33110 | 72.840 | 162 | 44 | 0 | 1 | 162 | 1 | 162 | 6.51e-86 | 253 |
| MS.gene78212.t1 | AT1G04750 | 81.560 | 141 | 26 | 0 | 79 | 219 | 1 | 141 | 1.17e-69 | 209 |
| MS.gene78212.t1 | AT1G04750 | 81.560 | 141 | 26 | 0 | 79 | 219 | 1 | 141 | 1.17e-69 | 209 |
| MS.gene78212.t1 | AT1G04750 | 81.560 | 141 | 26 | 0 | 79 | 219 | 1 | 141 | 1.17e-69 | 209 |
| MS.gene78212.t1 | AT5G22360 | 39.252 | 214 | 126 | 3 | 5 | 216 | 2 | 213 | 3.76e-54 | 173 |
| MS.gene78212.t1 | AT5G11150 | 39.070 | 215 | 125 | 5 | 5 | 216 | 2 | 213 | 3.35e-51 | 166 |
| MS.gene78212.t1 | AT5G11150 | 39.070 | 215 | 125 | 5 | 5 | 216 | 2 | 213 | 5.37e-51 | 165 |
| MS.gene78212.t1 | AT4G32150 | 37.559 | 213 | 130 | 3 | 5 | 216 | 2 | 212 | 9.29e-48 | 157 |
| MS.gene78212.t1 | AT2G25340 | 36.842 | 190 | 117 | 3 | 5 | 193 | 2 | 189 | 2.15e-41 | 140 |
| MS.gene78212.t1 | AT2G33120 | 84.375 | 96 | 15 | 0 | 126 | 221 | 44 | 139 | 3.55e-38 | 129 |
| MS.gene78212.t1 | AT3G24890 | 56.383 | 94 | 35 | 2 | 113 | 200 | 14 | 107 | 2.54e-26 | 99.0 |
| MS.gene78212.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.61e-15 | 69.3 |
| MS.gene78212.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.61e-15 | 69.3 |
| MS.gene78212.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.61e-15 | 69.3 |
| MS.gene78212.t1 | AT3G24890 | 53.846 | 65 | 26 | 1 | 110 | 174 | 11 | 71 | 1.61e-15 | 69.3 |
Find 46 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGCTTTATCTTCATATTT+TGG | 0.145204 | 7.4:+44572206 | None:intergenic |
| AAAGAACAATAATGAGAATT+AGG | 0.159352 | 7.4:+44572161 | None:intergenic |
| TGTTCGATGAGGGAAGTTTC+TGG | 0.242534 | 7.4:+44574862 | None:intergenic |
| GAAGATAAAGCTAATTGTTC+TGG | 0.270272 | 7.4:-44572197 | MS.gene78212:CDS |
| GAAAGCTTGCTAATCTCCTC+TGG | 0.379999 | 7.4:+44573571 | None:intergenic |
| AAGAACAATAATGAGAATTA+GGG | 0.385939 | 7.4:+44572162 | None:intergenic |
| GTTGTTGCTGTTGAGTCTGC+TGG | 0.391522 | 7.4:-44573828 | MS.gene78212:CDS |
| AAGAGTCTCAATAAAGAGTT+CGG | 0.392785 | 7.4:-44573717 | MS.gene78212:CDS |
| AATCTTCCTTGATACGTTCA+AGG | 0.408743 | 7.4:+44573784 | None:intergenic |
| ATACGTTCAAGGAAAGCAAT+TGG | 0.426895 | 7.4:+44573795 | None:intergenic |
| GACAGAGAACCTTCGCTCTC+AGG | 0.438230 | 7.4:-44573212 | MS.gene78212:intron |
| TGCTTTCCTTGAACGTATCA+AGG | 0.453306 | 7.4:-44573790 | MS.gene78212:CDS |
| AAGATAAAGCTAATTGTTCT+GGG | 0.458032 | 7.4:-44572196 | MS.gene78212:CDS |
| ATTATTGTTCTTTCAATCTG+TGG | 0.460900 | 7.4:-44572151 | MS.gene78212:CDS |
| AGAGTCTCAATAAAGAGTTC+GGG | 0.482939 | 7.4:-44573716 | MS.gene78212:intron |
| CAACGAGGTAATTGAAGGTA+TGG | 0.488938 | 7.4:+44574814 | None:intergenic |
| GGCAACGGCGGTGAAGTTAC+CGG | 0.490789 | 7.4:+44574896 | None:intergenic |
| CCACATGTTTCTCCTAAGCT+TGG | 0.494084 | 7.4:+44572231 | None:intergenic |
| CTGGAGACACTGCGCGGCAA+CGG | 0.514487 | 7.4:+44574881 | None:intergenic |
| ATTGTTCTTTCAATCTGTGG+TGG | 0.517961 | 7.4:-44572148 | MS.gene78212:CDS |
| TTTGGCAGGTTCTGGACCGT+GGG | 0.521838 | 7.4:-44573261 | MS.gene78212:intron |
| GCTTTCTAAAGTGCAAGCTC+AGG | 0.524990 | 7.4:-44573554 | MS.gene78212:CDS |
| AGAGGTCAAAGGAGTTATGA+TGG | 0.525035 | 7.4:-44573527 | MS.gene78212:CDS |
| GGCAACATGGAACCAAGCTT+AGG | 0.549032 | 7.4:-44572243 | MS.gene78212:CDS |
| TTCAATTACCTCGTTGATAG+CGG | 0.554201 | 7.4:-44574807 | MS.gene78212:CDS |
| GCTATCAACGAGGTAATTGA+AGG | 0.555122 | 7.4:+44574809 | None:intergenic |
| ATGGTGTAGATCTAAGTTGA+AGG | 0.560301 | 7.4:-44573620 | MS.gene78212:intron |
| TTGAACTTATTGTTCGATGA+GGG | 0.567003 | 7.4:+44574852 | None:intergenic |
| GCTCAGGTCTCAGAGGTCAA+AGG | 0.570543 | 7.4:-44573538 | MS.gene78212:CDS |
| ATTGAACTTATTGTTCGATG+AGG | 0.575942 | 7.4:+44574851 | None:intergenic |
| GCTGAATACACTGAGTTCAC+CGG | 0.580372 | 7.4:-44574915 | MS.gene78212:CDS |
| GCACAAGATTTCAGGCAACA+TGG | 0.581723 | 7.4:-44572256 | MS.gene78212:CDS |
| AAGTTCAATTATAACTGCGA+TGG | 0.585634 | 7.4:-44574837 | MS.gene78212:CDS |
| AAAGCTTGCTAATCTCCTCT+GGG | 0.600356 | 7.4:+44573572 | None:intergenic |
| TATGATGGAGAATATTGAGA+AGG | 0.608070 | 7.4:-44573512 | MS.gene78212:intron |
| GAGACACTGCGCGGCAACGG+CGG | 0.616928 | 7.4:+44574884 | None:intergenic |
| ATCTACAGCTTCGTTGCTCG+CGG | 0.618567 | 7.4:-44574951 | MS.gene78212:CDS |
| AGTGCAAGCTCAGGTCTCAG+AGG | 0.652865 | 7.4:-44573545 | MS.gene78212:CDS |
| ACCAACAGACCTGAGAGCGA+AGG | 0.661970 | 7.4:+44573203 | None:intergenic |
| TTGCTGTTGAGTCTGCTGGA+CGG | 0.664323 | 7.4:-44573824 | MS.gene78212:CDS |
| TTTAGCAAGAAATATGCTGG+AGG | 0.673624 | 7.4:-44573762 | MS.gene78212:CDS |
| TTGGCAGGTTCTGGACCGTG+GGG | 0.702676 | 7.4:-44573260 | MS.gene78212:intron |
| TACTGAATCCGCTATCAACG+AGG | 0.730358 | 7.4:+44574799 | None:intergenic |
| CCAAGCTTAGGAGAAACATG+TGG | 0.755323 | 7.4:-44572231 | MS.gene78212:CDS |
| AAGTTTCTGGAGACACTGCG+CGG | 0.759403 | 7.4:+44574875 | None:intergenic |
| GTACTGTGTTGAACACCCAG+AGG | 0.812131 | 7.4:-44573587 | MS.gene78212:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATATATATAAATA+AGG | - | chr7.4:44572527-44572546 | MS.gene78212:intron | 0.0% |
| !! | AATTAACAAAATAAAATTTC+AGG | + | chr7.4:44573419-44573438 | None:intergenic | 10.0% |
| !!! | AAAATTTTTTGTAGATAAAA+TGG | - | chr7.4:44572991-44573010 | MS.gene78212:intron | 10.0% |
| !!! | TCTATAATATTTATCTATTT+TGG | - | chr7.4:44573819-44573838 | MS.gene78212:CDS | 10.0% |
| !!! | TTGAAAAAAATTCATATTTT+TGG | - | chr7.4:44574778-44574797 | MS.gene78212:intron | 10.0% |
| !! | TAGACAAATATATAGTTAAT+AGG | - | chr7.4:44574273-44574292 | MS.gene78212:intron | 15.0% |
| !! | TAGATAAAATGGAAAATTAA+GGG | - | chr7.4:44573002-44573021 | MS.gene78212:intron | 15.0% |
| !! | AAAGAACAATAATGAGAATT+AGG | + | chr7.4:44574940-44574959 | None:intergenic | 20.0% |
| !! | AAGAACAATAATGAGAATTA+GGG | + | chr7.4:44574939-44574958 | None:intergenic | 20.0% |
| !! | AGATAAAATGGAAAATTAAG+GGG | - | chr7.4:44573003-44573022 | MS.gene78212:intron | 20.0% |
| !! | ATATATAAATAAGGCGTAAT+AGG | - | chr7.4:44572536-44572555 | MS.gene78212:intron | 20.0% |
| !! | ATATATAGTTAATAGGTAAG+AGG | - | chr7.4:44574280-44574299 | MS.gene78212:intron | 20.0% |
| !! | GTAGATAAAATGGAAAATTA+AGG | - | chr7.4:44573001-44573020 | MS.gene78212:intron | 20.0% |
| !! | TTAATTCACCATTTACATTT+GGG | + | chr7.4:44573105-44573124 | None:intergenic | 20.0% |
| !! | TTATCACAATAAGACTTAAA+AGG | - | chr7.4:44574425-44574444 | MS.gene78212:intron | 20.0% |
| !! | TTTAATTCACCATTTACATT+TGG | + | chr7.4:44573106-44573125 | None:intergenic | 20.0% |
| !!! | GTTAATAACTTGATTGTTTT+TGG | - | chr7.4:44573138-44573157 | MS.gene78212:intron | 20.0% |
| !!! | TAATATTTATCTATTTTGGC+AGG | - | chr7.4:44573823-44573842 | MS.gene78212:CDS | 20.0% |
| !!! | TATCGATTAATTTTTTGAGA+TGG | - | chr7.4:44574600-44574619 | MS.gene78212:intron | 20.0% |
| !!! | TTAGCTTTATCTTCATATTT+TGG | + | chr7.4:44574895-44574914 | None:intergenic | 20.0% |
| !!! | TTATTTTGTTAATTTGCTAG+TGG | - | chr7.4:44573425-44573444 | MS.gene78212:intron | 20.0% |
| ! | AAATAAGTTGTATTCGATGT+AGG | - | chr7.4:44572918-44572937 | MS.gene78212:intron | 25.0% |
| ! | AAGATAAAGCTAATTGTTCT+GGG | - | chr7.4:44574902-44574921 | MS.gene78212:CDS | 25.0% |
| ! | AATGTCATAGTTACATTGAA+TGG | - | chr7.4:44574342-44574361 | MS.gene78212:intron | 25.0% |
| ! | ATTATTGTTCTTTCAATCTG+TGG | - | chr7.4:44574947-44574966 | MS.gene78212:CDS | 25.0% |
| ! | ATTGAATGGAATGTTGTAAT+AGG | - | chr7.4:44574356-44574375 | MS.gene78212:intron | 25.0% |
| ! | GTAAAAACAAATCATCAGTA+AGG | - | chr7.4:44574537-44574556 | MS.gene78212:intron | 25.0% |
| ! | GTAATCTTCAATCATAATCA+TGG | - | chr7.4:44574222-44574241 | MS.gene78212:intron | 25.0% |
| ! | GTAATTATCATTGTAAGCAT+AGG | - | chr7.4:44574144-44574163 | MS.gene78212:intron | 25.0% |
| ! | GTGTAAACTGTAGTATATTT+CGG | - | chr7.4:44574622-44574641 | MS.gene78212:intron | 25.0% |
| ! | TAAGACTTAAAAGGTAAATC+TGG | - | chr7.4:44574434-44574453 | MS.gene78212:intron | 25.0% |
| ! | TGTAAATGGTGAATTAAATC+TGG | - | chr7.4:44573108-44573127 | MS.gene78212:intron | 25.0% |
| ! | TTTACTATCCCAAATGTAAA+TGG | - | chr7.4:44573094-44573113 | MS.gene78212:intron | 25.0% |
| !! | AAGAGCAACATTTAAAATTC+TGG | - | chr7.4:44572963-44572982 | MS.gene78212:intron | 25.0% |
| !! | CAATTCATATATGATTTTGC+AGG | - | chr7.4:44574820-44574839 | MS.gene78212:CDS | 25.0% |
| !! | TTCAATCATAATCATGGTTT+TGG | - | chr7.4:44574228-44574247 | MS.gene78212:intron | 25.0% |
| !!! | AACATTTTTGAAATCTGTGA+AGG | - | chr7.4:44572481-44572500 | MS.gene78212:intron | 25.0% |
| !!! | ACATTTTTGAAATCTGTGAA+GGG | - | chr7.4:44572482-44572501 | MS.gene78212:intron | 25.0% |
| !!! | AGTGTTTTTAGTAGTCAATA+TGG | - | chr7.4:44574119-44574138 | MS.gene78212:intron | 25.0% |
| !!! | CTACCTATTTTTATTTTCCT+GGG | + | chr7.4:44573650-44573669 | None:intergenic | 25.0% |
| !!! | TCTACCTATTTTTATTTTCC+TGG | + | chr7.4:44573651-44573670 | None:intergenic | 25.0% |
| !!! | TGGAATATTTTGTTTTCTCT+TGG | - | chr7.4:44573158-44573177 | MS.gene78212:intron | 25.0% |
| AAGAGTCTCAATAAAGAGTT+CGG | - | chr7.4:44573381-44573400 | MS.gene78212:intron | 30.0% | |
| AAGTTCAATTATAACTGCGA+TGG | - | chr7.4:44572261-44572280 | MS.gene78212:intron | 30.0% | |
| AATAGGTATGTGATTCATGT+GGG | - | chr7.4:44574373-44574392 | MS.gene78212:intron | 30.0% | |
| AGATTACTCAGAGTATACAT+TGG | + | chr7.4:44574209-44574228 | None:intergenic | 30.0% | |
| ATTGAACTTATTGTTCGATG+AGG | + | chr7.4:44572250-44572269 | None:intergenic | 30.0% | |
| GAAAATGTTAAGGATGTAAG+TGG | + | chr7.4:44573616-44573635 | None:intergenic | 30.0% | |
| GAAGATAAAGCTAATTGTTC+TGG | - | chr7.4:44574901-44574920 | MS.gene78212:CDS | 30.0% | |
| GATAACCTAAAACGAAAAAG+TGG | + | chr7.4:44574410-44574429 | None:intergenic | 30.0% | |
| GCTATATAGAATGAAATCTG+AGG | - | chr7.4:44573041-44573060 | MS.gene78212:intron | 30.0% | |
| GTTCCCAGGAAAATAAAAAT+AGG | - | chr7.4:44573644-44573663 | MS.gene78212:intron | 30.0% | |
| TAAAAGGTAAATCTGGTATG+AGG | - | chr7.4:44574441-44574460 | MS.gene78212:intron | 30.0% | |
| TAATAGGTATGTGATTCATG+TGG | - | chr7.4:44574372-44574391 | MS.gene78212:intron | 30.0% | |
| TCTTAAACCTCAACAGAAAA+AGG | + | chr7.4:44573198-44573217 | None:intergenic | 30.0% | |
| TGAGGAAGAAAGAAAACATT+TGG | - | chr7.4:44573059-44573078 | MS.gene78212:intron | 30.0% | |
| TTGAACTTATTGTTCGATGA+GGG | + | chr7.4:44572249-44572268 | None:intergenic | 30.0% | |
| ! | AGCAGTCTTATAAAAGTGTA+GGG | - | chr7.4:44573958-44573977 | MS.gene78212:intron | 30.0% |
| ! | GGTTTAAGATGTTATGAGTT+TGG | - | chr7.4:44573209-44573228 | MS.gene78212:intron | 30.0% |
| ! | TACATTATGTCTTTTTGCTG+TGG | - | chr7.4:44573671-44573690 | MS.gene78212:intron | 30.0% |
| ! | TATGATGGAGAATATTGAGA+AGG | - | chr7.4:44573586-44573605 | MS.gene78212:CDS | 30.0% |
| !! | ACATTATGTCTTTTTGCTGT+GGG | - | chr7.4:44573672-44573691 | MS.gene78212:intron | 30.0% |
| !! | GATTTTAGCAAGAAATATGC+TGG | - | chr7.4:44573333-44573352 | MS.gene78212:intron | 30.0% |
| !! | GGACATGGTATTATTTTTCT+TGG | - | chr7.4:44574643-44574662 | MS.gene78212:intron | 30.0% |
| !! | TGTGAAATCTTTGTTGTTCA+TGG | - | chr7.4:44573459-44573478 | MS.gene78212:intron | 30.0% |
| !!! | TTTTGCCACTTTTTCGTTTT+AGG | - | chr7.4:44574402-44574421 | MS.gene78212:intron | 30.0% |
| AATCTTCCTTGATACGTTCA+AGG | + | chr7.4:44573317-44573336 | None:intergenic | 35.0% | |
| ACAAGCATACACAGATCAAA+AGG | + | chr7.4:44574519-44574538 | None:intergenic | 35.0% | |
| ACAGAGAAGGGAAAATGTTA+AGG | + | chr7.4:44573626-44573645 | None:intergenic | 35.0% | |
| ACTGTAGTATATTTCGGACA+TGG | - | chr7.4:44574628-44574647 | MS.gene78212:intron | 35.0% | |
| AGAGTCTCAATAAAGAGTTC+GGG | - | chr7.4:44573382-44573401 | MS.gene78212:intron | 35.0% | |
| ATACGTTCAAGGAAAGCAAT+TGG | + | chr7.4:44573306-44573325 | None:intergenic | 35.0% | |
| ATTCTACTGTACACAGATCA+AGG | + | chr7.4:44572413-44572432 | None:intergenic | 35.0% | |
| ATTGTTCTTTCAATCTGTGG+TGG | - | chr7.4:44574950-44574969 | MS.gene78212:CDS | 35.0% | |
| CAACTTGAAACATGAACACT+TGG | + | chr7.4:44573762-44573781 | None:intergenic | 35.0% | |
| GAATCAAATTTCGCGTTTGA+AGG | + | chr7.4:44574677-44574696 | None:intergenic | 35.0% | |
| GGGTGATAGATTGTTATAGA+TGG | - | chr7.4:44573978-44573997 | MS.gene78212:intron | 35.0% | |
| TATAAGACTGCTGTGCTAAA+AGG | + | chr7.4:44573950-44573969 | None:intergenic | 35.0% | |
| TGTAATCACATGTGTTAGTG+TGG | - | chr7.4:44572788-44572807 | MS.gene78212:intron | 35.0% | |
| TTGATCTGTGTACAGTAGAA+TGG | - | chr7.4:44572412-44572431 | MS.gene78212:intron | 35.0% | |
| TTTAGCAAGAAATATGCTGG+AGG | - | chr7.4:44573336-44573355 | MS.gene78212:intron | 35.0% | |
| ! | AAACACAACATTGAGTTGTG+TGG | + | chr7.4:44574028-44574047 | None:intergenic | 35.0% |
| ! | AACACAACATTGAGTTGTGT+GGG | + | chr7.4:44574027-44574046 | None:intergenic | 35.0% |
| ! | ATGGTGTAGATCTAAGTTGA+AGG | - | chr7.4:44573478-44573497 | MS.gene78212:intron | 35.0% |
| ! | CAGCAGTCTTATAAAAGTGT+AGG | - | chr7.4:44573957-44573976 | MS.gene78212:intron | 35.0% |
| ! | TGGTTTTCCTTTTTCTGTTG+AGG | - | chr7.4:44573188-44573207 | MS.gene78212:intron | 35.0% |
| ! | TGTTTTCTCTTGGTGAAGTT+TGG | - | chr7.4:44573168-44573187 | MS.gene78212:intron | 35.0% |
| ! | TTCAATTACCTCGTTGATAG+CGG | - | chr7.4:44572291-44572310 | MS.gene78212:intron | 35.0% |
| !!! | TTATCTATTTTGGCAGGTTC+TGG | - | chr7.4:44573829-44573848 | MS.gene78212:CDS | 35.0% |
| AGAGGTCAAAGGAGTTATGA+TGG | - | chr7.4:44573571-44573590 | MS.gene78212:CDS | 40.0% | |
| CAACGAGGTAATTGAAGGTA+TGG | + | chr7.4:44572287-44572306 | None:intergenic | 40.0% | |
| CATGCTATGAAGCACATAAG+CGG | - | chr7.4:44572700-44572719 | MS.gene78212:intron | 40.0% | |
| GCTATCAACGAGGTAATTGA+AGG | + | chr7.4:44572292-44572311 | None:intergenic | 40.0% | |
| TAAGTGCTCTCGATTACGAA+AGG | + | chr7.4:44574718-44574737 | None:intergenic | 40.0% | |
| TGCTTTCCTTGAACGTATCA+AGG | - | chr7.4:44573308-44573327 | MS.gene78212:intron | 40.0% | |
| TTGAATGTGAGTGTGTGACA+TGG | - | chr7.4:44573791-44573810 | MS.gene78212:CDS | 40.0% | |
| ! | AAAGCTCAATTTTCTCCCCA+CGG | + | chr7.4:44573856-44573875 | None:intergenic | 40.0% |
| ! | ATTTTCCTGGGAACAGAGAA+GGG | + | chr7.4:44573638-44573657 | None:intergenic | 40.0% |
| ! | GTGCATTGACACATTGAAAC+TGG | - | chr7.4:44572736-44572755 | MS.gene78212:intron | 40.0% |
| ! | TATTTTCCTGGGAACAGAGA+AGG | + | chr7.4:44573639-44573658 | None:intergenic | 40.0% |
| ! | TTTTGCAGGCACAAGATTTC+AGG | - | chr7.4:44574834-44574853 | MS.gene78212:CDS | 40.0% |
| !! | AAAGCTTGCTAATCTCCTCT+GGG | + | chr7.4:44573529-44573548 | None:intergenic | 40.0% |
| !! | TATGTCTTTTTGCTGTGGGT+GGG | - | chr7.4:44573676-44573695 | MS.gene78212:intron | 40.0% |
| !! | TTATGTCTTTTTGCTGTGGG+TGG | - | chr7.4:44573675-44573694 | MS.gene78212:intron | 40.0% |
| ATGTTCAACTGACACGACAC+AGG | + | chr7.4:44572865-44572884 | None:intergenic | 45.0% | |
| ATTCTGATCGAAGACGTGTC+TGG | + | chr7.4:44572823-44572842 | None:intergenic | 45.0% | |
| CACGTCTTCGATCAGAATGT+CGG | - | chr7.4:44572825-44572844 | MS.gene78212:intron | 45.0% | |
| CCAAGCTTAGGAGAAACATG+TGG | - | chr7.4:44574867-44574886 | MS.gene78212:CDS | 45.0% | |
| CCACATGTTTCTCCTAAGCT+TGG | + | chr7.4:44574870-44574889 | None:intergenic | 45.0% | |
| GCACAAGATTTCAGGCAACA+TGG | - | chr7.4:44574842-44574861 | MS.gene78212:CDS | 45.0% | |
| GCTGAATACACTGAGTTCAC+CGG | - | chr7.4:44572183-44572202 | MS.gene78212:CDS | 45.0% | |
| TACTGAATCCGCTATCAACG+AGG | + | chr7.4:44572302-44572321 | None:intergenic | 45.0% | |
| TGTGTCAATGCACTTGTGTC+TGG | + | chr7.4:44572729-44572748 | None:intergenic | 45.0% | |
| TGTTCGATGAGGGAAGTTTC+TGG | + | chr7.4:44572239-44572258 | None:intergenic | 45.0% | |
| ! | ATTTTCCCTTCTCTGTTCCC+AGG | - | chr7.4:44573630-44573649 | MS.gene78212:intron | 45.0% |
| !! | GAAAGCTTGCTAATCTCCTC+TGG | + | chr7.4:44573530-44573549 | None:intergenic | 45.0% |
| !! | GCTTTCTAAAGTGCAAGCTC+AGG | - | chr7.4:44573544-44573563 | MS.gene78212:CDS | 45.0% |
| !!! | TTATTTTCTTAAATTATTAT+CGG | + | chr7.4:44572653-44572672 | None:intergenic | 5.0% |
| ATCTACAGCTTCGTTGCTCG+CGG | - | chr7.4:44572147-44572166 | MS.gene78212:CDS | 50.0% | |
| CAACCGACGCTTCAGATTGA+AGG | + | chr7.4:44572896-44572915 | None:intergenic | 50.0% | |
| CGATTACGAAAGGTCACTGC+AGG | + | chr7.4:44574708-44574727 | None:intergenic | 50.0% | |
| GGCAACATGGAACCAAGCTT+AGG | - | chr7.4:44574855-44574874 | MS.gene78212:CDS | 50.0% | |
| GTACTGTGTTGAACACCCAG+AGG | - | chr7.4:44573511-44573530 | MS.gene78212:intron | 50.0% | |
| ! | AAGTTTCTGGAGACACTGCG+CGG | + | chr7.4:44572226-44572245 | None:intergenic | 50.0% |
| ! | ACGCCTTCAATCTGAAGCGT+CGG | - | chr7.4:44572890-44572909 | MS.gene78212:intron | 50.0% |
| ! | GTTGTTGCTGTTGAGTCTGC+TGG | - | chr7.4:44573270-44573289 | MS.gene78212:intron | 50.0% |
| ! | TTGCTGTTGAGTCTGCTGGA+CGG | - | chr7.4:44573274-44573293 | MS.gene78212:intron | 50.0% |
| ACCAACAGACCTGAGAGCGA+AGG | + | chr7.4:44573898-44573917 | None:intergenic | 55.0% | |
| ACCTTCGCTCTCAGGTCTGT+TGG | - | chr7.4:44573894-44573913 | MS.gene78212:intron | 55.0% | |
| AGTGCAAGCTCAGGTCTCAG+AGG | - | chr7.4:44573553-44573572 | MS.gene78212:CDS | 55.0% | |
| AGTTGTGTGGGAGAGAGCAG+GGG | + | chr7.4:44574015-44574034 | None:intergenic | 55.0% | |
| GACAGAGAACCTTCGCTCTC+AGG | - | chr7.4:44573886-44573905 | MS.gene78212:intron | 55.0% | |
| GAGTTGTGTGGGAGAGAGCA+GGG | + | chr7.4:44574016-44574035 | None:intergenic | 55.0% | |
| GCTCAGGTCTCAGAGGTCAA+AGG | - | chr7.4:44573560-44573579 | MS.gene78212:CDS | 55.0% | |
| TGAGTTGTGTGGGAGAGAGC+AGG | + | chr7.4:44574017-44574036 | None:intergenic | 55.0% | |
| !! | TTTGGCAGGTTCTGGACCGT+GGG | - | chr7.4:44573837-44573856 | MS.gene78212:CDS | 55.0% |
| !!! | TTTTGGCAGGTTCTGGACCG+TGG | - | chr7.4:44573836-44573855 | MS.gene78212:CDS | 55.0% |
| GGCAACGGCGGTGAAGTTAC+CGG | + | chr7.4:44572205-44572224 | None:intergenic | 60.0% | |
| !! | TTGGCAGGTTCTGGACCGTG+GGG | - | chr7.4:44573838-44573857 | MS.gene78212:CDS | 60.0% |
| CTGGAGACACTGCGCGGCAA+CGG | + | chr7.4:44572220-44572239 | None:intergenic | 65.0% | |
| GAGACACTGCGCGGCAACGG+CGG | + | chr7.4:44572217-44572236 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 44572129 | 44574991 | 44572129 | ID=MS.gene78212 |
| chr7.4 | mRNA | 44572129 | 44574991 | 44572129 | ID=MS.gene78212.t1;Parent=MS.gene78212 |
| chr7.4 | exon | 44574802 | 44574991 | 44574802 | ID=MS.gene78212.t1.exon1;Parent=MS.gene78212.t1 |
| chr7.4 | CDS | 44574802 | 44574991 | 44574802 | ID=cds.MS.gene78212.t1;Parent=MS.gene78212.t1 |
| chr7.4 | exon | 44573717 | 44573858 | 44573717 | ID=MS.gene78212.t1.exon2;Parent=MS.gene78212.t1 |
| chr7.4 | CDS | 44573717 | 44573858 | 44573717 | ID=cds.MS.gene78212.t1;Parent=MS.gene78212.t1 |
| chr7.4 | exon | 44573513 | 44573633 | 44573513 | ID=MS.gene78212.t1.exon3;Parent=MS.gene78212.t1 |
| chr7.4 | CDS | 44573513 | 44573633 | 44573513 | ID=cds.MS.gene78212.t1;Parent=MS.gene78212.t1 |
| chr7.4 | exon | 44573213 | 44573275 | 44573213 | ID=MS.gene78212.t1.exon4;Parent=MS.gene78212.t1 |
| chr7.4 | CDS | 44573213 | 44573275 | 44573213 | ID=cds.MS.gene78212.t1;Parent=MS.gene78212.t1 |
| chr7.4 | exon | 44572129 | 44572278 | 44572129 | ID=MS.gene78212.t1.exon5;Parent=MS.gene78212.t1 |
| chr7.4 | CDS | 44572129 | 44572278 | 44572129 | ID=cds.MS.gene78212.t1;Parent=MS.gene78212.t1 |
| Gene Sequence |
| Protein sequence |
