Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003315.t1 | XP_003594542.1 | 96.4 | 276 | 10 | 0 | 1 | 276 | 77 | 352 | 4.20E-146 | 527.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003315.t1 | Q9SUC0 | 70.2 | 272 | 81 | 0 | 1 | 272 | 75 | 346 | 5.1e-108 | 392.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003315.t1 | G7IKW2 | 96.4 | 276 | 10 | 0 | 1 | 276 | 77 | 352 | 3.0e-146 | 527.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003315 | MS.gene85223 | PPI |
| MS.gene47905 | MS.gene003315 | PPI |
| MS.gene003315 | MS.gene79722 | PPI |
| MS.gene003315 | MS.gene59608 | PPI |
| MS.gene003315 | MS.gene27946 | PPI |
| MS.gene030927 | MS.gene003315 | PPI |
| MS.gene67218 | MS.gene003315 | PPI |
| MS.gene98170 | MS.gene003315 | PPI |
| MS.gene057011 | MS.gene003315 | PPI |
| MS.gene76149 | MS.gene003315 | PPI |
| MS.gene003315 | MS.gene92143 | PPI |
| MS.gene003315 | MS.gene051949 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003315.t1 | MTR_2g030400 | 96.377 | 276 | 10 | 0 | 1 | 276 | 77 | 352 | 0.0 | 548 |
| MS.gene003315.t1 | MTR_2g030400 | 96.327 | 245 | 9 | 0 | 1 | 245 | 77 | 321 | 1.15e-172 | 479 |
| MS.gene003315.t1 | MTR_2g030400 | 94.595 | 222 | 12 | 0 | 1 | 222 | 77 | 298 | 4.92e-153 | 429 |
| MS.gene003315.t1 | MTR_2g030400 | 95.312 | 192 | 9 | 0 | 1 | 192 | 77 | 268 | 4.25e-130 | 370 |
| MS.gene003315.t1 | MTR_2g099910 | 29.455 | 275 | 168 | 8 | 5 | 276 | 87 | 338 | 1.67e-20 | 89.7 |
| MS.gene003315.t1 | MTR_2g099910 | 30.337 | 178 | 110 | 3 | 5 | 181 | 87 | 251 | 3.27e-16 | 76.6 |
| MS.gene003315.t1 | MTR_6g069685 | 27.092 | 251 | 159 | 8 | 12 | 258 | 373 | 603 | 5.66e-15 | 75.1 |
| MS.gene003315.t1 | MTR_8g102470 | 25.600 | 250 | 157 | 6 | 5 | 249 | 77 | 302 | 5.79e-15 | 73.9 |
| MS.gene003315.t1 | MTR_8g102470 | 25.600 | 250 | 157 | 6 | 5 | 249 | 53 | 278 | 6.82e-15 | 73.6 |
| MS.gene003315.t1 | MTR_8g088900 | 24.706 | 255 | 169 | 6 | 2 | 253 | 54 | 288 | 7.94e-14 | 71.2 |
| MS.gene003315.t1 | MTR_8g028120 | 29.282 | 181 | 115 | 3 | 4 | 184 | 41 | 208 | 2.62e-12 | 65.9 |
| MS.gene003315.t1 | MTR_2g099910 | 30.065 | 153 | 93 | 3 | 5 | 156 | 87 | 226 | 4.25e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003315.t1 | AT4G20930 | 70.221 | 272 | 81 | 0 | 1 | 272 | 3 | 274 | 2.25e-145 | 409 |
| MS.gene003315.t1 | AT4G20930 | 70.221 | 272 | 81 | 0 | 1 | 272 | 75 | 346 | 1.96e-144 | 409 |
| MS.gene003315.t1 | AT4G29120 | 27.200 | 250 | 153 | 5 | 5 | 249 | 79 | 304 | 1.28e-18 | 84.7 |
| MS.gene003315.t1 | AT1G17650 | 27.481 | 262 | 167 | 5 | 5 | 264 | 49 | 289 | 2.77e-18 | 83.2 |
| MS.gene003315.t1 | AT1G17650 | 27.907 | 258 | 163 | 5 | 5 | 260 | 108 | 344 | 3.86e-18 | 83.6 |
| MS.gene003315.t1 | AT1G18270 | 27.016 | 248 | 159 | 8 | 2 | 246 | 360 | 588 | 1.97e-14 | 73.6 |
| MS.gene003315.t1 | AT1G18270 | 27.016 | 248 | 159 | 8 | 2 | 246 | 360 | 588 | 1.99e-14 | 73.6 |
| MS.gene003315.t1 | AT1G18270 | 27.016 | 248 | 159 | 8 | 2 | 246 | 360 | 588 | 2.31e-14 | 73.6 |
| MS.gene003315.t1 | AT1G18270 | 27.016 | 248 | 159 | 8 | 2 | 246 | 361 | 589 | 2.31e-14 | 73.6 |
| MS.gene003315.t1 | AT1G71170 | 27.982 | 218 | 135 | 7 | 6 | 222 | 56 | 252 | 4.96e-13 | 68.2 |
| MS.gene003315.t1 | AT3G25530 | 25.379 | 264 | 172 | 6 | 4 | 264 | 41 | 282 | 1.86e-12 | 66.6 |
| MS.gene003315.t1 | AT1G71180 | 26.484 | 219 | 141 | 5 | 6 | 224 | 77 | 275 | 1.78e-11 | 63.9 |
| MS.gene003315.t1 | AT3G25530 | 28.249 | 177 | 115 | 3 | 4 | 180 | 41 | 205 | 2.40e-11 | 62.4 |
| MS.gene003315.t1 | AT3G25530 | 24.621 | 264 | 163 | 6 | 4 | 264 | 41 | 271 | 4.64e-11 | 62.4 |
Find 73 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGCTAGGTTCAAGTCTT+TGG | 0.226217 | 2.4:-59291043 | None:intergenic |
| TTTACCCATTGAAAGGAATA+AGG | 0.269875 | 2.4:-59289466 | None:intergenic |
| AAGTTGGATGCTCCTGTATC+TGG | 0.323070 | 2.4:+59288816 | MS.gene003315:CDS |
| GGACCAAATGGTTTGCTTCA+TGG | 0.325149 | 2.4:+59288433 | MS.gene003315:CDS |
| AAAATCCTTATTCCTTTCAA+TGG | 0.344755 | 2.4:+59289461 | MS.gene003315:CDS |
| AGCTGGGACACTTACTTTCA+TGG | 0.350863 | 2.4:+59288857 | MS.gene003315:CDS |
| GACGCTTACAACCCAGTTCC+TGG | 0.357489 | 2.4:+59290247 | MS.gene003315:CDS |
| AGGATTTGCATCTAAGCTTA+TGG | 0.364995 | 2.4:+59290309 | MS.gene003315:CDS |
| GAAAGATTTCTTGATGTTTG+TGG | 0.366414 | 2.4:-59288505 | None:intergenic |
| AGTATAATTGCGGCAGAAGC+TGG | 0.366584 | 2.4:+59288840 | MS.gene003315:CDS |
| GGCTTTGGCTGTGAGCATGC+TGG | 0.378931 | 2.4:+59289646 | MS.gene003315:CDS |
| CCTTCCATCAGTCCAGGAAC+TGG | 0.396337 | 2.4:-59290259 | None:intergenic |
| CCACCATGAAGCAAACCATT+TGG | 0.402422 | 2.4:-59288436 | None:intergenic |
| CTTGCTTCTGAAACTTCATA+TGG | 0.418592 | 2.4:-59288064 | None:intergenic |
| ACAATATATTGTGGTGGAGC+AGG | 0.424912 | 2.4:+59289492 | MS.gene003315:CDS |
| AATCTGTAATAATCTGGCTT+TGG | 0.430512 | 2.4:+59289631 | MS.gene003315:CDS |
| CTCGAGATGTTCTCTCAGAT+GGG | 0.431441 | 2.4:+59288022 | None:intergenic |
| AAATCCTTATTCCTTTCAAT+GGG | 0.433015 | 2.4:+59289462 | MS.gene003315:CDS |
| TGATGTTTGTGGATCAATAG+TGG | 0.435997 | 2.4:-59288494 | None:intergenic |
| GCTTTGGCTGTGAGCATGCT+GGG | 0.440551 | 2.4:+59289647 | MS.gene003315:CDS |
| TATACATTGTGTAGGTGGTT+GGG | 0.445094 | 2.4:+59288782 | MS.gene003315:intron |
| TCTCGAGATGTTCTCTCAGA+TGG | 0.457970 | 2.4:+59288021 | None:intergenic |
| TTATACATTGTGTAGGTGGT+TGG | 0.461336 | 2.4:+59288781 | MS.gene003315:intron |
| GATGTTTACACCGGACCAAA+TGG | 0.465843 | 2.4:+59288421 | MS.gene003315:CDS |
| GTAGAATCAGCTAAGCTGGC+TGG | 0.475008 | 2.4:+59291063 | MS.gene003315:CDS |
| GCAATTATACTTCCAGATAC+AGG | 0.481546 | 2.4:-59288828 | None:intergenic |
| ACTGCTCCAGCGCTCGATGT+TGG | 0.482838 | 2.4:+59289738 | MS.gene003315:CDS |
| CAACCCAGTTCCTGGACTGA+TGG | 0.498619 | 2.4:+59290255 | MS.gene003315:CDS |
| TTGCAGCAACGCCTAGGGAT+TGG | 0.503508 | 2.4:-59289694 | None:intergenic |
| AGCAGTAGAATCAGCTAAGC+TGG | 0.506298 | 2.4:+59291059 | MS.gene003315:CDS |
| ATGAAAAGTCTTTCGCATCA+TGG | 0.511349 | 2.4:-59291311 | None:intergenic |
| CTAGGGATTGGCCTAGAGCA+AGG | 0.513763 | 2.4:-59289682 | None:intergenic |
| TTTGAGCTTGAGATGTTAGT+GGG | 0.515415 | 2.4:-59291095 | None:intergenic |
| GGAAGGGGTGCCTTCTTCAA+AGG | 0.520426 | 2.4:+59290276 | MS.gene003315:CDS |
| AGGTACTTGCAGCAACGCCT+AGG | 0.522621 | 2.4:-59289700 | None:intergenic |
| GTATAATTGCGGCAGAAGCT+GGG | 0.534878 | 2.4:+59288841 | MS.gene003315:CDS |
| ATATCAGAAGCCCTTGCTCT+AGG | 0.535442 | 2.4:+59289671 | MS.gene003315:CDS |
| ATGAAGCAAACCATTTGGTC+CGG | 0.538365 | 2.4:-59288431 | None:intergenic |
| GCTTAGCTGATTCTACTGCT+AGG | 0.538593 | 2.4:-59291056 | None:intergenic |
| TTCATGGTGGGAAACTCATA+AGG | 0.543435 | 2.4:+59288449 | MS.gene003315:CDS |
| CCAGTTCCTGGACTGATGGA+AGG | 0.546656 | 2.4:+59290259 | MS.gene003315:CDS |
| GGCACCCCTTCCATCAGTCC+AGG | 0.548209 | 2.4:-59290265 | None:intergenic |
| TCGAGATGTTCTCTCAGATG+GGG | 0.548529 | 2.4:+59288023 | None:intergenic |
| CTTGCTCTAGGCCAATCCCT+AGG | 0.549755 | 2.4:+59289683 | MS.gene003315:CDS |
| GGTAAAAGTACAATATATTG+TGG | 0.550553 | 2.4:+59289483 | MS.gene003315:CDS |
| CTTCCATCAGTCCAGGAACT+GGG | 0.553606 | 2.4:-59290258 | None:intergenic |
| TATTGTGGTGGAGCAGGGAG+TGG | 0.557758 | 2.4:+59289498 | MS.gene003315:CDS |
| CCACTGTAATCCTTTGAAGA+AGG | 0.559568 | 2.4:-59290286 | None:intergenic |
| ACAGGAGCATCCAACTTGAC+AGG | 0.561992 | 2.4:-59288810 | None:intergenic |
| CAAATGGTTTGCTTCATGGT+GGG | 0.563899 | 2.4:+59288437 | MS.gene003315:CDS |
| GGTACTTGCAGCAACGCCTA+GGG | 0.564675 | 2.4:-59289699 | None:intergenic |
| TATACTGAGCTCTGCAATGG+TGG | 0.567654 | 2.4:+59291288 | MS.gene003315:CDS |
| CAATATATTGTGGTGGAGCA+GGG | 0.567934 | 2.4:+59289493 | MS.gene003315:CDS |
| CCAGCGCTCGATGTTGGAGT+AGG | 0.569698 | 2.4:+59289744 | MS.gene003315:CDS |
| GTACTCACATGGGCAGAAGA+AGG | 0.573187 | 2.4:-59288109 | None:intergenic |
| CAGTTCCTGGACTGATGGAA+GGG | 0.577079 | 2.4:+59290260 | MS.gene003315:CDS |
| GCAGTTAAATATCTCTGTCA+AGG | 0.579805 | 2.4:-59289720 | None:intergenic |
| TCTTCAAAGGATTACAGTGG+AGG | 0.583382 | 2.4:+59290289 | MS.gene003315:CDS |
| TATATTCTAAGAGAAAAGAA+AGG | 0.585892 | 2.4:+59288544 | MS.gene003315:CDS |
| TAGGGATTGGCCTAGAGCAA+GGG | 0.596025 | 2.4:-59289681 | None:intergenic |
| TCCCCAGGTTGGTGGCTCTG+AGG | 0.596081 | 2.4:+59289422 | MS.gene003315:intron |
| TTGGGAAAAGCCTGTCAAGT+TGG | 0.596194 | 2.4:+59288800 | MS.gene003315:CDS |
| GTGGGAAACTCATAAGGCCA+TGG | 0.603788 | 2.4:+59288455 | MS.gene003315:CDS |
| CCTACTCCAACATCGAGCGC+TGG | 0.605426 | 2.4:-59289744 | None:intergenic |
| CCAAATGGTTTGCTTCATGG+TGG | 0.608565 | 2.4:+59288436 | MS.gene003315:CDS |
| CGAGATGTTCTCTCAGATGG+GGG | 0.618033 | 2.4:+59288024 | None:intergenic |
| AAAAGTACAATATATTGTGG+TGG | 0.624091 | 2.4:+59289486 | MS.gene003315:CDS |
| AGTTCCTGGACTGATGGAAG+GGG | 0.629595 | 2.4:+59290261 | MS.gene003315:CDS |
| GATGAATCTATCAATAACCA+TGG | 0.642144 | 2.4:-59288472 | None:intergenic |
| TAGGTAATTGATGTTTACAC+CGG | 0.646701 | 2.4:+59288412 | MS.gene003315:intron |
| CCTTCTTCAAAGGATTACAG+TGG | 0.647517 | 2.4:+59290286 | MS.gene003315:CDS |
| AGATATACTGAGCTCTGCAA+TGG | 0.649473 | 2.4:+59291285 | MS.gene003315:intron |
| TGTATCTGGAAGTATAATTG+CGG | 0.672531 | 2.4:+59288830 | MS.gene003315:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATCTTACAAAATATA+GGG | + | chr2.4:59290827-59290846 | MS.gene003315:intron | 10.0% |
| !! | TTTGATATAAAAATTATCAT+TGG | + | chr2.4:59289126-59289145 | MS.gene003315:intron | 10.0% |
| !! | AATTTGTATTAAACAAGAAA+TGG | + | chr2.4:59289395-59289414 | MS.gene003315:intron | 15.0% |
| !! | GTTAATATCTTACAAAATAT+AGG | + | chr2.4:59290826-59290845 | MS.gene003315:intron | 15.0% |
| !! | TAAGTAACAAAGTTAAAATT+GGG | + | chr2.4:59289526-59289545 | MS.gene003315:intron | 15.0% |
| !! | TACCTACTTAATTTAAAAAA+TGG | - | chr2.4:59288398-59288417 | None:intergenic | 15.0% |
| !!! | AAATATTTTTGGAAAATCAA+TGG | + | chr2.4:59289014-59289033 | MS.gene003315:intron | 15.0% |
| !!! | ACATAATAACAATACAATTT+TGG | + | chr2.4:59288905-59288924 | MS.gene003315:intron | 15.0% |
| !!! | ATCCATTTTTTAAATTAAGT+AGG | + | chr2.4:59288393-59288412 | MS.gene003315:intron | 15.0% |
| !!! | TTAAAAAATGGATGTTATTT+TGG | - | chr2.4:59288386-59288405 | None:intergenic | 15.0% |
| !!! | TTTGCTTTAAATTGAATTTT+AGG | + | chr2.4:59290982-59291001 | MS.gene003315:intron | 15.0% |
| !! | AAATGATTAAAAGACTCTTT+AGG | - | chr2.4:59290005-59290024 | None:intergenic | 20.0% |
| !! | AAGTAACAAAGTTAAAATTG+GGG | + | chr2.4:59289527-59289546 | MS.gene003315:intron | 20.0% |
| !! | AATAAATTACTACAACACAA+TGG | - | chr2.4:59290409-59290428 | None:intergenic | 20.0% |
| !! | ATAGCAATACAACTTAAATT+TGG | - | chr2.4:59290475-59290494 | None:intergenic | 20.0% |
| !! | ATGATATGATATACATTCTA+TGG | - | chr2.4:59288648-59288667 | None:intergenic | 20.0% |
| !! | ATTCAGTCATATAATAGTAT+TGG | - | chr2.4:59288356-59288375 | None:intergenic | 20.0% |
| !! | GTAAGTAACAAAGTTAAAAT+TGG | + | chr2.4:59289525-59289544 | MS.gene003315:intron | 20.0% |
| !! | TAGATTAACTAACAATCTTA+CGG | + | chr2.4:59290155-59290174 | MS.gene003315:intron | 20.0% |
| !! | TGAATAATTATACATTGTGT+AGG | + | chr2.4:59288774-59288793 | MS.gene003315:intron | 20.0% |
| !! | TTCAGTCATATAATAGTATT+GGG | - | chr2.4:59288355-59288374 | None:intergenic | 20.0% |
| !! | TTTCATTACTAATAATATCG+TGG | - | chr2.4:59289257-59289276 | None:intergenic | 20.0% |
| !!! | AAAGAGTACATCATTAATAT+TGG | - | chr2.4:59290675-59290694 | None:intergenic | 20.0% |
| !!! | AATTACTCCTTTTAATGTTT+TGG | + | chr2.4:59288748-59288767 | MS.gene003315:intron | 20.0% |
| !!! | TATATTCTAAGAGAAAAGAA+AGG | + | chr2.4:59288544-59288563 | MS.gene003315:CDS | 20.0% |
| !!! | TGTCTTTGTTTTTTGTTATT+AGG | + | chr2.4:59289601-59289620 | MS.gene003315:intron | 20.0% |
| !!! | TTAATGTTTTAGTACTTTGA+TGG | + | chr2.4:59290190-59290209 | MS.gene003315:intron | 20.0% |
| !!! | TTTGTGACTTGAAATATTTT+TGG | + | chr2.4:59289003-59289022 | MS.gene003315:intron | 20.0% |
| !!! | TTTTGAGAACACTAATAAAT+CGG | - | chr2.4:59290028-59290047 | None:intergenic | 20.0% |
| ! | AAAATCCTTATTCCTTTCAA+TGG | + | chr2.4:59289461-59289480 | MS.gene003315:CDS | 25.0% |
| ! | AAAGAAAGAAGTAATCACAA+TGG | - | chr2.4:59290909-59290928 | None:intergenic | 25.0% |
| ! | AAATCCTTATTCCTTTCAAT+GGG | + | chr2.4:59289462-59289481 | MS.gene003315:CDS | 25.0% |
| ! | ACATCATTAATATTGGAGAT+TGG | - | chr2.4:59290668-59290687 | None:intergenic | 25.0% |
| ! | ACTGCAAAAAATTCTTTACT+TGG | + | chr2.4:59290614-59290633 | MS.gene003315:intron | 25.0% |
| ! | AGCAAAAATCTGTAATAATC+TGG | + | chr2.4:59289625-59289644 | MS.gene003315:CDS | 25.0% |
| ! | AGCTATAGTTAACTGAAAAT+TGG | - | chr2.4:59288241-59288260 | None:intergenic | 25.0% |
| ! | ATAATTATACATTGTGTAGG+TGG | + | chr2.4:59288777-59288796 | MS.gene003315:intron | 25.0% |
| ! | ATCCATTGGTAAACAAATTT+AGG | - | chr2.4:59291256-59291275 | None:intergenic | 25.0% |
| ! | ATTGTACACAATGCTAAAAA+GGG | - | chr2.4:59290109-59290128 | None:intergenic | 25.0% |
| ! | CATGATCAAGTAATTAACAA+AGG | + | chr2.4:59289284-59289303 | MS.gene003315:intron | 25.0% |
| ! | GAATGATATTGATATAATCC+TGG | + | chr2.4:59289081-59289100 | MS.gene003315:intron | 25.0% |
| ! | GATAGAATTATTAGTACTCT+TGG | + | chr2.4:59289549-59289568 | MS.gene003315:intron | 25.0% |
| ! | TATCTCTAGATTTACTATGT+TGG | + | chr2.4:59290702-59290721 | MS.gene003315:intron | 25.0% |
| ! | TATTGTACACAATGCTAAAA+AGG | - | chr2.4:59290110-59290129 | None:intergenic | 25.0% |
| ! | TCTTAGTCAAAGATTTGAAT+CGG | - | chr2.4:59288289-59288308 | None:intergenic | 25.0% |
| !! | AAAAGTACAATATATTGTGG+TGG | + | chr2.4:59289486-59289505 | MS.gene003315:CDS | 25.0% |
| !! | ATTAAAAGACTCTTTAGGAA+AGG | - | chr2.4:59290000-59290019 | None:intergenic | 25.0% |
| !! | GGTAAAAGTACAATATATTG+TGG | + | chr2.4:59289483-59289502 | MS.gene003315:CDS | 25.0% |
| !! | TGTATTGTTATTATGTGTGT+TGG | - | chr2.4:59288901-59288920 | None:intergenic | 25.0% |
| !! | TTGCATTATTACAGTGATTT+TGG | + | chr2.4:59290370-59290389 | MS.gene003315:intron | 25.0% |
| !! | TTGGTATACTTTTCTCAATT+TGG | + | chr2.4:59289207-59289226 | MS.gene003315:intron | 25.0% |
| !! | TTGTGATTACTTCTTTCTTT+TGG | + | chr2.4:59290909-59290928 | MS.gene003315:intron | 25.0% |
| !!! | GAGTAGTATTTTTGTTAACA+AGG | - | chr2.4:59290087-59290106 | None:intergenic | 25.0% |
| !!! | TCTGCATCTTTTTTTTATAC+AGG | + | chr2.4:59289831-59289850 | MS.gene003315:intron | 25.0% |
| AATAAAATACTTCAACCTCC+TGG | - | chr2.4:59289933-59289952 | None:intergenic | 30.0% | |
| AATGAATGCGATGTATTGAA+CGG | - | chr2.4:59288159-59288178 | None:intergenic | 30.0% | |
| AATTTCCAGAATCAAATGCA+TGG | - | chr2.4:59288952-59288971 | None:intergenic | 30.0% | |
| ACATTCTCATGAAATTGTCA+AGG | - | chr2.4:59288700-59288719 | None:intergenic | 30.0% | |
| ATCTTACAAAATATAGGGTG+AGG | + | chr2.4:59290832-59290851 | MS.gene003315:intron | 30.0% | |
| ATTGGTGTAATAGTCTTTCA+AGG | + | chr2.4:59289157-59289176 | MS.gene003315:intron | 30.0% | |
| CAAGTTAAATGCAGTTTACT+TGG | - | chr2.4:59288591-59288610 | None:intergenic | 30.0% | |
| CAGCAACTTATCATAAAACT+TGG | + | chr2.4:59291226-59291245 | MS.gene003315:intron | 30.0% | |
| CTTAGGTATTATGCAAGAAA+AGG | - | chr2.4:59291132-59291151 | None:intergenic | 30.0% | |
| CTTAGTCAAAGATTTGAATC+GGG | - | chr2.4:59288288-59288307 | None:intergenic | 30.0% | |
| GAAAGACTATTACACCAATT+TGG | - | chr2.4:59289156-59289175 | None:intergenic | 30.0% | |
| GAAAGATTTCTTGATGTTTG+TGG | - | chr2.4:59288508-59288527 | None:intergenic | 30.0% | |
| GATCAAGTAATTAACAAAGG+CGG | + | chr2.4:59289287-59289306 | MS.gene003315:intron | 30.0% | |
| GATGAATCTATCAATAACCA+TGG | - | chr2.4:59288475-59288494 | None:intergenic | 30.0% | |
| GTTAACAAGGAAAAACAAAG+TGG | - | chr2.4:59290074-59290093 | None:intergenic | 30.0% | |
| TACAGTGTTTATCAAACTTC+AGG | - | chr2.4:59290958-59290977 | None:intergenic | 30.0% | |
| TAGGTAATTGATGTTTACAC+CGG | + | chr2.4:59288412-59288431 | MS.gene003315:intron | 30.0% | |
| TATCTGCACAAAAAATCCAT+TGG | - | chr2.4:59291270-59291289 | None:intergenic | 30.0% | |
| TCTTACAAAATATAGGGTGA+GGG | + | chr2.4:59290833-59290852 | MS.gene003315:intron | 30.0% | |
| TGAAATGAATGTACTCACAT+GGG | - | chr2.4:59288122-59288141 | None:intergenic | 30.0% | |
| TGGTACTTACTACTGAATTA+GGG | - | chr2.4:59289894-59289913 | None:intergenic | 30.0% | |
| TTAAATGCAGTTTACTTGGA+CGG | - | chr2.4:59288587-59288606 | None:intergenic | 30.0% | |
| TTAGTCAAAGATTTGAATCG+GGG | - | chr2.4:59288287-59288306 | None:intergenic | 30.0% | |
| TTCAGCACCAAAACATTAAA+AGG | - | chr2.4:59288758-59288777 | None:intergenic | 30.0% | |
| TTTACCCATTGAAAGGAATA+AGG | - | chr2.4:59289469-59289488 | None:intergenic | 30.0% | |
| TTTGAGAAAACAGAAGTGAT+TGG | - | chr2.4:59290763-59290782 | None:intergenic | 30.0% | |
| ! | AATCTGTAATAATCTGGCTT+TGG | + | chr2.4:59289631-59289650 | MS.gene003315:CDS | 30.0% |
| ! | CTGTTTTCTCAAACTATTAC+CGG | + | chr2.4:59290770-59290789 | MS.gene003315:intron | 30.0% |
| ! | GTCCTAAATTTGTTTACCAA+TGG | + | chr2.4:59291251-59291270 | MS.gene003315:intron | 30.0% |
| ! | TCATATGGTGTTTTCATTGT+AGG | - | chr2.4:59288052-59288071 | None:intergenic | 30.0% |
| ! | TGAAAGGAATAAGGATTTTG+CGG | - | chr2.4:59289460-59289479 | None:intergenic | 30.0% |
| ! | TGTATCTGGAAGTATAATTG+CGG | + | chr2.4:59288830-59288849 | MS.gene003315:CDS | 30.0% |
| ! | TTATCATTGGAGTACCAAAT+TGG | + | chr2.4:59289139-59289158 | MS.gene003315:intron | 30.0% |
| ! | TTGTACTTTTACCCATTGAA+AGG | - | chr2.4:59289476-59289495 | None:intergenic | 30.0% |
| !! | ACAATTTTGGCACTAATTGT+AGG | + | chr2.4:59288918-59288937 | MS.gene003315:intron | 30.0% |
| !! | GGAGGTTGAAGTATTTTATT+TGG | + | chr2.4:59289933-59289952 | MS.gene003315:intron | 30.0% |
| !!! | AAGAATTTTTTGCAGTACCA+AGG | - | chr2.4:59290610-59290629 | None:intergenic | 30.0% |
| AAAGACCATGCATTTGATTC+TGG | + | chr2.4:59288944-59288963 | MS.gene003315:intron | 35.0% | |
| AACGTTTGAATGTTTACCTC+AGG | + | chr2.4:59291020-59291039 | MS.gene003315:intron | 35.0% | |
| AACTATGCTGCTAAGTTGTA+AGG | + | chr2.4:59291191-59291210 | MS.gene003315:intron | 35.0% | |
| AAGTCACAAAATCCGATAAG+CGG | - | chr2.4:59288993-59289012 | None:intergenic | 35.0% | |
| AATGGTCAGTGACATCAAAA+TGG | + | chr2.4:59289032-59289051 | MS.gene003315:intron | 35.0% | |
| AGACCACAAAAGATCATTTG+AGG | - | chr2.4:59289059-59289078 | None:intergenic | 35.0% | |
| AGACTTGTCATGACATACTT+AGG | - | chr2.4:59291149-59291168 | None:intergenic | 35.0% | |
| AGGATTTGCATCTAAGCTTA+TGG | + | chr2.4:59290309-59290328 | MS.gene003315:CDS | 35.0% | |
| AGTCTTTCAAGGACCAAAAT+GGG | + | chr2.4:59289168-59289187 | MS.gene003315:intron | 35.0% | |
| ATGAAAAGTCTTTCGCATCA+TGG | - | chr2.4:59291314-59291333 | None:intergenic | 35.0% | |
| ATGCTAATCTTTCCGCTTAT+CGG | + | chr2.4:59288978-59288997 | MS.gene003315:intron | 35.0% | |
| CTGAAATGAATGTACTCACA+TGG | - | chr2.4:59288123-59288142 | None:intergenic | 35.0% | |
| GACCACAAAAGATCATTTGA+GGG | - | chr2.4:59289058-59289077 | None:intergenic | 35.0% | |
| GCAATTATACTTCCAGATAC+AGG | - | chr2.4:59288831-59288850 | None:intergenic | 35.0% | |
| GCAGTTAAATATCTCTGTCA+AGG | - | chr2.4:59289723-59289742 | None:intergenic | 35.0% | |
| GTGGTACTTACTACTGAATT+AGG | - | chr2.4:59289895-59289914 | None:intergenic | 35.0% | |
| TAGTCTTTCAAGGACCAAAA+TGG | + | chr2.4:59289167-59289186 | MS.gene003315:intron | 35.0% | |
| TATACATTGTGTAGGTGGTT+GGG | + | chr2.4:59288782-59288801 | MS.gene003315:intron | 35.0% | |
| TCCAAAAGTTTCTGTAAACC+AGG | - | chr2.4:59289102-59289121 | None:intergenic | 35.0% | |
| TGATGTTTGTGGATCAATAG+TGG | - | chr2.4:59288497-59288516 | None:intergenic | 35.0% | |
| TGTTACCTAATTCTCATGCA+AGG | - | chr2.4:59289332-59289351 | None:intergenic | 35.0% | |
| TTATACATTGTGTAGGTGGT+TGG | + | chr2.4:59288781-59288800 | MS.gene003315:intron | 35.0% | |
| TTTGAGCTTGAGATGTTAGT+GGG | - | chr2.4:59291098-59291117 | None:intergenic | 35.0% | |
| ! | TCCTGGTTTACAGAAACTTT+TGG | + | chr2.4:59289098-59289117 | MS.gene003315:intron | 35.0% |
| ! | TTACATTAAGCACCCCATTT+TGG | - | chr2.4:59289184-59289203 | None:intergenic | 35.0% |
| ! | TTTTGAGCTTGAGATGTTAG+TGG | - | chr2.4:59291099-59291118 | None:intergenic | 35.0% |
| !! | CTTGCTTCTGAAACTTCATA+TGG | - | chr2.4:59288067-59288086 | None:intergenic | 35.0% |
| !!! | GCTTTTCGTCATTTTTACTC+AGG | + | chr2.4:59291336-59291355 | MS.gene003315:CDS | 35.0% |
| !!! | TCGTCATTTTTACTCAGGAA+TGG | + | chr2.4:59291341-59291360 | MS.gene003315:CDS | 35.0% |
| AAACAGTTGCAGCAAAGTTC+TGG | + | chr2.4:59289358-59289377 | MS.gene003315:intron | 40.0% | |
| AAGTAGTTGCAGAACTACAG+AGG | - | chr2.4:59288200-59288219 | None:intergenic | 40.0% | |
| AGATATACTGAGCTCTGCAA+TGG | + | chr2.4:59291285-59291304 | MS.gene003315:intron | 40.0% | |
| ATGAAGCAAACCATTTGGTC+CGG | - | chr2.4:59288434-59288453 | None:intergenic | 40.0% | |
| ATGCGATGTATTGAACGGAA+AGG | - | chr2.4:59288154-59288173 | None:intergenic | 40.0% | |
| CAACACTGACATGTAGAAAC+CGG | - | chr2.4:59290792-59290811 | None:intergenic | 40.0% | |
| CCTTCTTCAAAGGATTACAG+TGG | + | chr2.4:59290286-59290305 | MS.gene003315:CDS | 40.0% | |
| GTCTTTCAAGGACCAAAATG+GGG | + | chr2.4:59289169-59289188 | MS.gene003315:intron | 40.0% | |
| TACAGCCTTGCATGAGAATT+AGG | + | chr2.4:59289324-59289343 | MS.gene003315:intron | 40.0% | |
| TACTGCTAGGTTCAAGTCTT+TGG | - | chr2.4:59291046-59291065 | None:intergenic | 40.0% | |
| TAGCAGCATAGTTCTCACAA+CGG | - | chr2.4:59291184-59291203 | None:intergenic | 40.0% | |
| TAGTAAGTACCACGTCAAGT+TGG | + | chr2.4:59289902-59289921 | MS.gene003315:intron | 40.0% | |
| TCTTCAAAGGATTACAGTGG+AGG | + | chr2.4:59290289-59290308 | MS.gene003315:CDS | 40.0% | |
| ! | ACAATATATTGTGGTGGAGC+AGG | + | chr2.4:59289492-59289511 | MS.gene003315:CDS | 40.0% |
| ! | CAATATATTGTGGTGGAGCA+GGG | + | chr2.4:59289493-59289512 | MS.gene003315:CDS | 40.0% |
| ! | CCACTGTAATCCTTTGAAGA+AGG | - | chr2.4:59290289-59290308 | None:intergenic | 40.0% |
| ! | GGGGTGCTTAATGTAACATT+TGG | + | chr2.4:59289188-59289207 | MS.gene003315:intron | 40.0% |
| ! | TTCATGGTGGGAAACTCATA+AGG | + | chr2.4:59288449-59288468 | MS.gene003315:CDS | 40.0% |
| !! | ACAAGAAATGGATTTTCCCC+AGG | + | chr2.4:59289407-59289426 | MS.gene003315:intron | 40.0% |
| !! | CAAATGGTTTGCTTCATGGT+GGG | + | chr2.4:59288437-59288456 | MS.gene003315:CDS | 40.0% |
| !!! | GCAGCAAAGTTCTGGATTTT+TGG | + | chr2.4:59289366-59289385 | MS.gene003315:intron | 40.0% |
| AAGTTGGATGCTCCTGTATC+TGG | + | chr2.4:59288816-59288835 | MS.gene003315:CDS | 45.0% | |
| AGCAGTAGAATCAGCTAAGC+TGG | + | chr2.4:59291059-59291078 | MS.gene003315:CDS | 45.0% | |
| AGCTGGGACACTTACTTTCA+TGG | + | chr2.4:59288857-59288876 | MS.gene003315:CDS | 45.0% | |
| AGTATAATTGCGGCAGAAGC+TGG | + | chr2.4:59288840-59288859 | MS.gene003315:CDS | 45.0% | |
| ATATCAGAAGCCCTTGCTCT+AGG | + | chr2.4:59289671-59289690 | MS.gene003315:CDS | 45.0% | |
| CATTATCGAGCTTACAGCCT+TGG | + | chr2.4:59290590-59290609 | MS.gene003315:intron | 45.0% | |
| CCACCATGAAGCAAACCATT+TGG | - | chr2.4:59288439-59288458 | None:intergenic | 45.0% | |
| GATGTTTACACCGGACCAAA+TGG | + | chr2.4:59288421-59288440 | MS.gene003315:CDS | 45.0% | |
| GTATAATTGCGGCAGAAGCT+GGG | + | chr2.4:59288841-59288860 | MS.gene003315:CDS | 45.0% | |
| TATACTGAGCTCTGCAATGG+TGG | + | chr2.4:59291288-59291307 | MS.gene003315:CDS | 45.0% | |
| TCAGCATGACAATTAGCTGC+AGG | + | chr2.4:59289793-59289812 | MS.gene003315:intron | 45.0% | |
| TTAGGAAAGGTCACTTGCAG+TGG | - | chr2.4:59289987-59290006 | None:intergenic | 45.0% | |
| TTGGGAAAAGCCTGTCAAGT+TGG | + | chr2.4:59288800-59288819 | MS.gene003315:CDS | 45.0% | |
| ! | GCTTAGCTGATTCTACTGCT+AGG | - | chr2.4:59291059-59291078 | None:intergenic | 45.0% |
| ! | GGCCCTCAAATGATCTTTTG+TGG | + | chr2.4:59289053-59289072 | MS.gene003315:intron | 45.0% |
| !! | CCAAATGGTTTGCTTCATGG+TGG | + | chr2.4:59288436-59288455 | MS.gene003315:CDS | 45.0% |
| !! | GAAATGGATTTTCCCCAGGT+TGG | + | chr2.4:59289411-59289430 | MS.gene003315:intron | 45.0% |
| !! | GGACCAAATGGTTTGCTTCA+TGG | + | chr2.4:59288433-59288452 | MS.gene003315:CDS | 45.0% |
| AGGTTCAAGTCTTTGGCCTG+AGG | - | chr2.4:59291039-59291058 | None:intergenic | 50.0% | |
| AGTTCCTGGACTGATGGAAG+GGG | + | chr2.4:59290261-59290280 | MS.gene003315:CDS | 50.0% | |
| CAGTTCCTGGACTGATGGAA+GGG | + | chr2.4:59290260-59290279 | MS.gene003315:CDS | 50.0% | |
| CTGCCATTAAGCTGAAGTGC+TGG | + | chr2.4:59290553-59290572 | MS.gene003315:intron | 50.0% | |
| CTGGCATTTCCAACTTGACG+TGG | - | chr2.4:59289914-59289933 | None:intergenic | 50.0% | |
| CTTCCATCAGTCCAGGAACT+GGG | - | chr2.4:59290261-59290280 | None:intergenic | 50.0% | |
| GCACCAGCACTTCAGCTTAA+TGG | - | chr2.4:59290559-59290578 | None:intergenic | 50.0% | |
| GTACTCACATGGGCAGAAGA+AGG | - | chr2.4:59288112-59288131 | None:intergenic | 50.0% | |
| GTAGAATCAGCTAAGCTGGC+TGG | + | chr2.4:59291063-59291082 | MS.gene003315:CDS | 50.0% | |
| GTGGGAAACTCATAAGGCCA+TGG | + | chr2.4:59288455-59288474 | MS.gene003315:CDS | 50.0% | |
| !! | ACAGGAGCATCCAACTTGAC+AGG | - | chr2.4:59288813-59288832 | None:intergenic | 50.0% |
| !! | ATGGATTTTCCCCAGGTTGG+TGG | + | chr2.4:59289414-59289433 | MS.gene003315:intron | 50.0% |
| !! | CACGTCAAGTTGGAAATGCC+AGG | + | chr2.4:59289912-59289931 | MS.gene003315:intron | 50.0% |
| !! | GTCAAGTTGGAAATGCCAGG+AGG | + | chr2.4:59289915-59289934 | MS.gene003315:intron | 50.0% |
| !! | TAGGGATTGGCCTAGAGCAA+GGG | - | chr2.4:59289684-59289703 | None:intergenic | 50.0% |
| AGGTACTTGCAGCAACGCCT+AGG | - | chr2.4:59289703-59289722 | None:intergenic | 55.0% | |
| CAACCCAGTTCCTGGACTGA+TGG | + | chr2.4:59290255-59290274 | MS.gene003315:CDS | 55.0% | |
| CCAGTTCCTGGACTGATGGA+AGG | + | chr2.4:59290259-59290278 | MS.gene003315:CDS | 55.0% | |
| CCTTCCATCAGTCCAGGAAC+TGG | - | chr2.4:59290262-59290281 | None:intergenic | 55.0% | |
| GACGCTTACAACCCAGTTCC+TGG | + | chr2.4:59290247-59290266 | MS.gene003315:CDS | 55.0% | |
| GCTTTGGCTGTGAGCATGCT+GGG | + | chr2.4:59289647-59289666 | MS.gene003315:CDS | 55.0% | |
| GGTACTTGCAGCAACGCCTA+GGG | - | chr2.4:59289702-59289721 | None:intergenic | 55.0% | |
| TTCCTCAGAGCCACCAACCT+GGG | - | chr2.4:59289427-59289446 | None:intergenic | 55.0% | |
| TTGCAGCAACGCCTAGGGAT+TGG | - | chr2.4:59289697-59289716 | None:intergenic | 55.0% | |
| ! | CTTGCTCTAGGCCAATCCCT+AGG | + | chr2.4:59289683-59289702 | MS.gene003315:CDS | 55.0% |
| ! | TATTGTGGTGGAGCAGGGAG+TGG | + | chr2.4:59289498-59289517 | MS.gene003315:CDS | 55.0% |
| !! | CTAGGGATTGGCCTAGAGCA+AGG | - | chr2.4:59289685-59289704 | None:intergenic | 55.0% |
| !! | GGAAGGGGTGCCTTCTTCAA+AGG | + | chr2.4:59290276-59290295 | MS.gene003315:CDS | 55.0% |
| ACTGCTCCAGCGCTCGATGT+TGG | + | chr2.4:59289738-59289757 | MS.gene003315:CDS | 60.0% | |
| CCAGCGCTCGATGTTGGAGT+AGG | + | chr2.4:59289744-59289763 | MS.gene003315:CDS | 60.0% | |
| CCTACTCCAACATCGAGCGC+TGG | - | chr2.4:59289747-59289766 | None:intergenic | 60.0% | |
| CTTCCTCAGAGCCACCAACC+TGG | - | chr2.4:59289428-59289447 | None:intergenic | 60.0% | |
| TCCTCAGAGCCACCAACCTG+GGG | - | chr2.4:59289426-59289445 | None:intergenic | 60.0% | |
| ! | GGCTTTGGCTGTGAGCATGC+TGG | + | chr2.4:59289646-59289665 | MS.gene003315:CDS | 60.0% |
| GGCACCCCTTCCATCAGTCC+AGG | - | chr2.4:59290268-59290287 | None:intergenic | 65.0% | |
| !! | TCCCCAGGTTGGTGGCTCTG+AGG | + | chr2.4:59289422-59289441 | MS.gene003315:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 59288028 | 59291383 | 59288028 | ID=MS.gene003315 |
| chr2.4 | mRNA | 59288028 | 59291383 | 59288028 | ID=MS.gene003315.t1;Parent=MS.gene003315 |
| chr2.4 | exon | 59288028 | 59288123 | 59288028 | ID=MS.gene003315.t1.exon1;Parent=MS.gene003315.t1 |
| chr2.4 | CDS | 59288028 | 59288123 | 59288028 | ID=cds.MS.gene003315.t1;Parent=MS.gene003315.t1 |
| chr2.4 | exon | 59288415 | 59288565 | 59288415 | ID=MS.gene003315.t1.exon2;Parent=MS.gene003315.t1 |
| chr2.4 | CDS | 59288415 | 59288565 | 59288415 | ID=cds.MS.gene003315.t1;Parent=MS.gene003315.t1 |
| chr2.4 | exon | 59288796 | 59288878 | 59288796 | ID=MS.gene003315.t1.exon3;Parent=MS.gene003315.t1 |
| chr2.4 | CDS | 59288796 | 59288878 | 59288796 | ID=cds.MS.gene003315.t1;Parent=MS.gene003315.t1 |
| chr2.4 | exon | 59289429 | 59289524 | 59289429 | ID=MS.gene003315.t1.exon4;Parent=MS.gene003315.t1 |
| chr2.4 | CDS | 59289429 | 59289524 | 59289429 | ID=cds.MS.gene003315.t1;Parent=MS.gene003315.t1 |
| chr2.4 | exon | 59289623 | 59289765 | 59289623 | ID=MS.gene003315.t1.exon5;Parent=MS.gene003315.t1 |
| chr2.4 | CDS | 59289623 | 59289765 | 59289623 | ID=cds.MS.gene003315.t1;Parent=MS.gene003315.t1 |
| chr2.4 | exon | 59290246 | 59290330 | 59290246 | ID=MS.gene003315.t1.exon6;Parent=MS.gene003315.t1 |
| chr2.4 | CDS | 59290246 | 59290330 | 59290246 | ID=cds.MS.gene003315.t1;Parent=MS.gene003315.t1 |
| chr2.4 | exon | 59291042 | 59291121 | 59291042 | ID=MS.gene003315.t1.exon7;Parent=MS.gene003315.t1 |
| chr2.4 | CDS | 59291042 | 59291121 | 59291042 | ID=cds.MS.gene003315.t1;Parent=MS.gene003315.t1 |
| chr2.4 | exon | 59291287 | 59291383 | 59291287 | ID=MS.gene003315.t1.exon8;Parent=MS.gene003315.t1 |
| chr2.4 | CDS | 59291287 | 59291383 | 59291287 | ID=cds.MS.gene003315.t1;Parent=MS.gene003315.t1 |
| Gene Sequence |
| Protein sequence |
