Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27946.t1 | XP_024627482.1 | 94.8 | 307 | 16 | 0 | 1 | 307 | 1 | 307 | 2.30E-161 | 578.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27946.t1 | Q949M8 | 54.9 | 306 | 127 | 2 | 1 | 306 | 22 | 316 | 4.8e-91 | 335.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27946.t1 | G7L8W3 | 94.8 | 307 | 16 | 0 | 1 | 307 | 1 | 307 | 1.7e-161 | 578.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79722 | MS.gene27946 | PPI |
| MS.gene02110 | MS.gene27946 | PPI |
| MS.gene003315 | MS.gene27946 | PPI |
| MS.gene92143 | MS.gene27946 | PPI |
| MS.gene03058 | MS.gene27946 | PPI |
| MS.gene47905 | MS.gene27946 | PPI |
| MS.gene05985 | MS.gene27946 | PPI |
| MS.gene015821 | MS.gene27946 | PPI |
| MS.gene74531 | MS.gene27946 | PPI |
| MS.gene049066 | MS.gene27946 | PPI |
| MS.gene59608 | MS.gene27946 | PPI |
| MS.gene030927 | MS.gene27946 | PPI |
| MS.gene67218 | MS.gene27946 | PPI |
| MS.gene98170 | MS.gene27946 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27946.t1 | MTR_8g088900 | 94.788 | 307 | 16 | 0 | 1 | 307 | 1 | 307 | 0.0 | 596 |
| MS.gene27946.t1 | MTR_8g102470 | 50.333 | 300 | 143 | 3 | 7 | 305 | 5 | 299 | 4.91e-99 | 294 |
| MS.gene27946.t1 | MTR_8g102470 | 50.333 | 300 | 143 | 3 | 7 | 305 | 29 | 323 | 1.42e-98 | 293 |
| MS.gene27946.t1 | MTR_2g099910 | 32.677 | 254 | 168 | 2 | 10 | 262 | 42 | 293 | 2.30e-37 | 136 |
| MS.gene27946.t1 | MTR_2g099910 | 34.123 | 211 | 136 | 2 | 10 | 219 | 42 | 250 | 4.19e-32 | 120 |
| MS.gene27946.t1 | MTR_8g028120 | 27.755 | 245 | 173 | 3 | 15 | 258 | 2 | 243 | 7.68e-30 | 114 |
| MS.gene27946.t1 | MTR_2g099910 | 34.225 | 187 | 120 | 2 | 10 | 195 | 42 | 226 | 4.52e-26 | 103 |
| MS.gene27946.t1 | MTR_6g069685 | 24.671 | 304 | 218 | 5 | 9 | 306 | 318 | 616 | 2.29e-22 | 97.8 |
| MS.gene27946.t1 | MTR_6g069685 | 23.364 | 214 | 154 | 4 | 16 | 223 | 7 | 216 | 6.83e-11 | 63.5 |
| MS.gene27946.t1 | MTR_2g030400 | 25.914 | 301 | 196 | 9 | 9 | 288 | 35 | 329 | 2.40e-20 | 90.1 |
| MS.gene27946.t1 | MTR_2g030400 | 30.144 | 209 | 129 | 7 | 16 | 210 | 42 | 247 | 2.57e-20 | 89.0 |
| MS.gene27946.t1 | MTR_2g030400 | 30.144 | 209 | 129 | 7 | 16 | 210 | 42 | 247 | 3.27e-20 | 89.0 |
| MS.gene27946.t1 | MTR_2g030400 | 26.894 | 264 | 169 | 8 | 16 | 258 | 42 | 302 | 3.40e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27946.t1 | AT1G71180 | 54.902 | 306 | 127 | 2 | 1 | 306 | 22 | 316 | 2.85e-104 | 307 |
| MS.gene27946.t1 | AT1G71170 | 53.268 | 306 | 134 | 2 | 1 | 306 | 1 | 297 | 3.28e-103 | 304 |
| MS.gene27946.t1 | AT4G29120 | 48.322 | 298 | 148 | 3 | 9 | 305 | 33 | 325 | 1.26e-96 | 288 |
| MS.gene27946.t1 | AT1G17650 | 29.644 | 253 | 171 | 4 | 13 | 262 | 7 | 255 | 3.31e-30 | 116 |
| MS.gene27946.t1 | AT1G17650 | 29.644 | 253 | 171 | 4 | 13 | 262 | 66 | 314 | 1.11e-29 | 116 |
| MS.gene27946.t1 | AT3G25530 | 27.083 | 288 | 204 | 3 | 15 | 301 | 2 | 284 | 1.86e-29 | 114 |
| MS.gene27946.t1 | AT3G25530 | 29.126 | 206 | 143 | 2 | 15 | 219 | 2 | 205 | 9.79e-26 | 102 |
| MS.gene27946.t1 | AT3G25530 | 28.125 | 288 | 190 | 5 | 15 | 301 | 2 | 273 | 3.27e-25 | 102 |
| MS.gene27946.t1 | AT1G18270 | 25.338 | 296 | 212 | 5 | 15 | 306 | 323 | 613 | 7.40e-22 | 96.7 |
| MS.gene27946.t1 | AT1G18270 | 25.338 | 296 | 212 | 5 | 15 | 306 | 323 | 613 | 8.43e-22 | 96.3 |
| MS.gene27946.t1 | AT1G18270 | 25.338 | 296 | 212 | 5 | 15 | 306 | 324 | 614 | 8.43e-22 | 96.3 |
| MS.gene27946.t1 | AT1G18270 | 25.338 | 296 | 212 | 5 | 15 | 306 | 323 | 613 | 9.55e-22 | 96.3 |
| MS.gene27946.t1 | AT4G20930 | 29.665 | 209 | 130 | 7 | 16 | 210 | 40 | 245 | 2.01e-19 | 87.8 |
| MS.gene27946.t1 | AT4G20930 | 27.684 | 177 | 113 | 6 | 57 | 219 | 7 | 182 | 8.18e-14 | 70.9 |
Find 99 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAAGGCATTGGAGTTATT+TGG | 0.151791 | 4.4:+12153401 | MS.gene27946:CDS |
| GATTGAAGAGAGAGGGAATT+TGG | 0.159207 | 4.4:-12152870 | None:intergenic |
| AAAACCGTTGTTTGAAATAA+TGG | 0.184681 | 4.4:+12153208 | MS.gene27946:CDS |
| GGAAGGTGAATTTGCGAGTT+TGG | 0.245854 | 4.4:-12152901 | None:intergenic |
| GTGGATGCGGTGATTGGGTT+TGG | 0.265810 | 4.4:-12152741 | None:intergenic |
| GAGTATCAAGTTAAGGATTT+AGG | 0.269336 | 4.4:+12153467 | MS.gene27946:CDS |
| TGGGAAGAGGATGATAAATA+AGG | 0.295134 | 4.4:+12153421 | MS.gene27946:CDS |
| CGGGTCGTGGATGCGGTGAT+TGG | 0.303864 | 4.4:-12152747 | None:intergenic |
| TCTGTTATTGATAGGATTAA+TGG | 0.305673 | 4.4:+12153620 | MS.gene27946:CDS |
| TTTACTGGTATGGTTGCTAA+TGG | 0.309860 | 4.4:+12153566 | MS.gene27946:CDS |
| AAACCGTTGTTTGAAATAAT+GGG | 0.320966 | 4.4:+12153209 | MS.gene27946:CDS |
| CGAAGGCATTGGAGTTATTT+GGG | 0.322668 | 4.4:+12153402 | MS.gene27946:CDS |
| ATTGAAGAGAGAGGGAATTT+GGG | 0.348354 | 4.4:-12152869 | None:intergenic |
| GTGTTATTTCTGTTATTGAT+AGG | 0.359139 | 4.4:+12153612 | MS.gene27946:CDS |
| GAGAGGGAATTTGGGTGAGA+TGG | 0.361588 | 4.4:-12152861 | None:intergenic |
| TTACTGGTATGGTTGCTAAT+GGG | 0.372029 | 4.4:+12153567 | MS.gene27946:CDS |
| AGAGGGAATTTGGGTGAGAT+GGG | 0.383239 | 4.4:-12152860 | None:intergenic |
| CCGGTATCCGGTGGGGATAT+CGG | 0.383577 | 4.4:+12153125 | MS.gene27946:CDS |
| GAGATTTCTTTAGCGAGATC+TGG | 0.387363 | 4.4:-12153062 | None:intergenic |
| TGGATGCGGTGATTGGGTTT+GGG | 0.390118 | 4.4:-12152740 | None:intergenic |
| AGATGGGTTGCGAGCGTAGA+AGG | 0.390367 | 4.4:-12152844 | None:intergenic |
| GTGTCTACAGTGACAGTGTT+GGG | 0.392820 | 4.4:-12153026 | None:intergenic |
| CGATTCCGATCCATCCGATT+CGG | 0.405924 | 4.4:-12152767 | None:intergenic |
| CAAGTTAAGGATTTAGGAAT+GGG | 0.417548 | 4.4:+12153473 | MS.gene27946:CDS |
| GCTAATGGGGATGGGAAGCT+TGG | 0.420897 | 4.4:+12153581 | MS.gene27946:CDS |
| ACCGCATCCACGACCCGAAT+CGG | 0.445574 | 4.4:+12152753 | MS.gene27946:CDS |
| GATTCCGATCCATCCGATTC+GGG | 0.447335 | 4.4:-12152766 | None:intergenic |
| TCAATCGATGCTCCGGTATC+CGG | 0.450145 | 4.4:+12153113 | MS.gene27946:CDS |
| TCCGATTCGGGTCGTGGATG+CGG | 0.460578 | 4.4:-12152754 | None:intergenic |
| TTATGCTGAGTATCAAGTTA+AGG | 0.464856 | 4.4:+12153460 | MS.gene27946:CDS |
| CATTGGAGTTATTTGGGAAG+AGG | 0.466061 | 4.4:+12153408 | MS.gene27946:CDS |
| GATCCATCCGATTCGGGTCG+TGG | 0.466090 | 4.4:-12152760 | None:intergenic |
| GATGGGAAGCTTGGTGGTCA+AGG | 0.474146 | 4.4:+12153590 | MS.gene27946:CDS |
| GGGTCGTGGATGCGGTGATT+GGG | 0.482315 | 4.4:-12152746 | None:intergenic |
| GCAATTAAGAATGGTGCAGC+GGG | 0.484227 | 4.4:+12153377 | MS.gene27946:CDS |
| CCGATATCCCCACCGGATAC+CGG | 0.488724 | 4.4:-12153125 | None:intergenic |
| TCAAGTTAAGGATTTAGGAA+TGG | 0.488927 | 4.4:+12153472 | MS.gene27946:CDS |
| CGCTTGGTCAATCGATGCTC+CGG | 0.491216 | 4.4:+12153106 | MS.gene27946:CDS |
| TCCCTCTCTCTTCAATCCCT+CGG | 0.495926 | 4.4:+12152876 | MS.gene27946:CDS |
| GTCGGAGGAGTTAGCGAGAT+GGG | 0.496377 | 4.4:-12152922 | None:intergenic |
| TGGATCGGAATCGGAGTGAT+GGG | 0.497760 | 4.4:+12152777 | MS.gene27946:CDS |
| GTAGAAGGTGAGAGTGTAAC+CGG | 0.498278 | 4.4:-12152829 | None:intergenic |
| TACTGGTATGGTTGCTAATG+GGG | 0.513602 | 4.4:+12153568 | MS.gene27946:CDS |
| ATGGATCGGAATCGGAGTGA+TGG | 0.514720 | 4.4:+12152776 | MS.gene27946:CDS |
| TTCAACTACAGAGGCTTCAC+CGG | 0.516853 | 4.4:-12153180 | None:intergenic |
| CGGAGTGATGGGCGGCGCAA+TGG | 0.519149 | 4.4:+12152788 | MS.gene27946:CDS |
| TGCAGCGGGGACGAAGGCAT+TGG | 0.519441 | 4.4:+12153391 | MS.gene27946:CDS |
| TGCAATTAAGAATGGTGCAG+CGG | 0.524648 | 4.4:+12153376 | MS.gene27946:CDS |
| CGAATCGGATGGATCGGAAT+CGG | 0.525123 | 4.4:+12152768 | MS.gene27946:CDS |
| ATCGATGCTCCGGTATCCGG+TGG | 0.526643 | 4.4:+12153116 | MS.gene27946:CDS |
| AATGGGAAAAGCAACATACA+TGG | 0.530781 | 4.4:+12153226 | MS.gene27946:CDS |
| AATGGGGATGGGAAGCTTGG+TGG | 0.531606 | 4.4:+12153584 | MS.gene27946:CDS |
| GCCTCACGCGTCATCTCCGC+CGG | 0.539648 | 4.4:+12152810 | MS.gene27946:CDS |
| GTCGGAGGGGTGACCGAGCA+TGG | 0.541540 | 4.4:-12152955 | None:intergenic |
| GTGAAGCCTCTGTAGTTGAA+TGG | 0.543870 | 4.4:+12153183 | MS.gene27946:CDS |
| TAGATTGATTTAACGTCGGA+GGG | 0.549674 | 4.4:-12152969 | None:intergenic |
| CGTCGGAGGAGTTAGCGAGA+TGG | 0.558276 | 4.4:-12152923 | None:intergenic |
| GTATGGTTGCTAATGGGGAT+GGG | 0.563707 | 4.4:+12153573 | MS.gene27946:CDS |
| ATGGGAAAAGCAACATACAT+GGG | 0.566603 | 4.4:+12153227 | MS.gene27946:CDS |
| ATTTGCGAGTTTGGCGCCGA+GGG | 0.572744 | 4.4:-12152892 | None:intergenic |
| GGTATGGTTGCTAATGGGGA+TGG | 0.581616 | 4.4:+12153572 | MS.gene27946:CDS |
| TCGATGCTCCGGTATCCGGT+GGG | 0.582749 | 4.4:+12153117 | MS.gene27946:CDS |
| TTTCCCATTATTTCAAACAA+CGG | 0.582825 | 4.4:-12153212 | None:intergenic |
| TAGTGTTTGCAAAACGAAGT+GGG | 0.586049 | 4.4:+12153330 | MS.gene27946:CDS |
| AGCGGATTTAACTCGTGCTA+CGG | 0.586888 | 4.4:-12153087 | None:intergenic |
| GCCGAGGGATTGAAGAGAGA+GGG | 0.588380 | 4.4:-12152877 | None:intergenic |
| CGCCGAGGGATTGAAGAGAG+AGG | 0.589036 | 4.4:-12152878 | None:intergenic |
| GAATGGTGCAGCGGGGACGA+AGG | 0.592089 | 4.4:+12153385 | MS.gene27946:CDS |
| CATCCACGACCCGAATCGGA+TGG | 0.595417 | 4.4:+12152757 | MS.gene27946:CDS |
| GTAGATTGATTTAACGTCGG+AGG | 0.596473 | 4.4:-12152970 | None:intergenic |
| AATTTGATCGGACTTAGTGA+AGG | 0.602083 | 4.4:+12153305 | MS.gene27946:CDS |
| ACTATCGGAGCGAATTTGAT+CGG | 0.602735 | 4.4:+12153293 | MS.gene27946:CDS |
| GGGGATATCGGAGCAAGAGA+CGG | 0.602736 | 4.4:+12153137 | MS.gene27946:CDS |
| GGTGTCTACAGTGACAGTGT+TGG | 0.605447 | 4.4:-12153027 | None:intergenic |
| AAACTAGCAATCTTCGCCGC+CGG | 0.607107 | 4.4:+12153161 | MS.gene27946:CDS |
| ACGACCCGAATCGGATGGAT+CGG | 0.611681 | 4.4:+12152762 | MS.gene27946:CDS |
| GAGGAGTTAGCGAGATGGGA+AGG | 0.613168 | 4.4:-12152918 | None:intergenic |
| AATTTGCGAGTTTGGCGCCG+AGG | 0.613686 | 4.4:-12152893 | None:intergenic |
| ATAGCGAATCAGATAACTAT+CGG | 0.617551 | 4.4:+12153278 | MS.gene27946:CDS |
| TGCTTAACCAAAGAAGCACC+AGG | 0.620317 | 4.4:-12153539 | None:intergenic |
| TGTCTACAGTGACAGTGTTG+GGG | 0.629152 | 4.4:-12153025 | None:intergenic |
| CGATGCTCCGGTATCCGGTG+GGG | 0.630682 | 4.4:+12153118 | MS.gene27946:CDS |
| AACTACAGAGGCTTCACCGG+CGG | 0.632581 | 4.4:-12153177 | None:intergenic |
| GGATTTAACTCGTGCTACGG+CGG | 0.633686 | 4.4:-12153084 | None:intergenic |
| TTAGTGTTTGCAAAACGAAG+TGG | 0.638669 | 4.4:+12153329 | MS.gene27946:CDS |
| TAGCACGAGTTAAATCCGCT+TGG | 0.644480 | 4.4:+12153090 | MS.gene27946:CDS |
| ATCGGAATCGGAGTGATGGG+CGG | 0.645915 | 4.4:+12152780 | MS.gene27946:CDS |
| TGGGAAAAGCAACATACATG+GGG | 0.646047 | 4.4:+12153228 | MS.gene27946:CDS |
| CGGAGCATCGATTGACCAAG+CGG | 0.652137 | 4.4:-12153105 | None:intergenic |
| TCTTGCTCCGATATCCCCAC+CGG | 0.654538 | 4.4:-12153132 | None:intergenic |
| GAGGTAGATTGATTTAACGT+CGG | 0.660666 | 4.4:-12152973 | None:intergenic |
| ACCGGCGGAGATGACGCGTG+AGG | 0.674463 | 4.4:-12152811 | None:intergenic |
| CATGGTGAAAACGACGTCGG+AGG | 0.675042 | 4.4:-12152937 | None:intergenic |
| AGATTGATTTAACGTCGGAG+GGG | 0.675762 | 4.4:-12152968 | None:intergenic |
| GAGATCTGGATGTGAGCTTG+TGG | 0.680246 | 4.4:-12153048 | None:intergenic |
| CAATTAAGAATGGTGCAGCG+GGG | 0.738040 | 4.4:+12153378 | MS.gene27946:CDS |
| GAGCATGGTGAAAACGACGT+CGG | 0.746260 | 4.4:-12152940 | None:intergenic |
| GGGAAAAGCAACATACATGG+GGG | 0.753851 | 4.4:+12153229 | MS.gene27946:CDS |
| GAAGGTGAGAGTGTAACCGG+CGG | 0.761972 | 4.4:-12152826 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCTGTTATTGATAGGATTAA+TGG | + | chr4.4:12153620-12153639 | MS.gene27946:CDS | 25.0% |
| ! | TTTCCCATTATTTCAAACAA+CGG | - | chr4.4:12153215-12153234 | None:intergenic | 25.0% |
| !! | AAAACCGTTGTTTGAAATAA+TGG | + | chr4.4:12153208-12153227 | MS.gene27946:CDS | 25.0% |
| !! | AAACCGTTGTTTGAAATAAT+GGG | + | chr4.4:12153209-12153228 | MS.gene27946:CDS | 25.0% |
| !! | GGATGATAAATAAGGATTTT+AGG | + | chr4.4:12153429-12153448 | MS.gene27946:CDS | 25.0% |
| !! | TTTTTGGATGCAATTAAGAA+TGG | + | chr4.4:12153368-12153387 | MS.gene27946:CDS | 25.0% |
| !!! | GTGTTATTTCTGTTATTGAT+AGG | + | chr4.4:12153612-12153631 | MS.gene27946:CDS | 25.0% |
| ATAGCGAATCAGATAACTAT+CGG | + | chr4.4:12153278-12153297 | MS.gene27946:CDS | 30.0% | |
| CAAGTTAAGGATTTAGGAAT+GGG | + | chr4.4:12153473-12153492 | MS.gene27946:CDS | 30.0% | |
| GAGTATCAAGTTAAGGATTT+AGG | + | chr4.4:12153467-12153486 | MS.gene27946:CDS | 30.0% | |
| TCAAGTTAAGGATTTAGGAA+TGG | + | chr4.4:12153472-12153491 | MS.gene27946:CDS | 30.0% | |
| TTATGCTGAGTATCAAGTTA+AGG | + | chr4.4:12153460-12153479 | MS.gene27946:CDS | 30.0% | |
| ! | ATAAATAAGGATTTTAGGCC+TGG | + | chr4.4:12153434-12153453 | MS.gene27946:CDS | 30.0% |
| ! | ATGGGTGTTAATTTTGTTGA+AGG | + | chr4.4:12153491-12153510 | MS.gene27946:CDS | 30.0% |
| ! | TAAATAAGGATTTTAGGCCT+GGG | + | chr4.4:12153435-12153454 | MS.gene27946:CDS | 30.0% |
| ! | TAAGCAGATTTTTACTGGTA+TGG | + | chr4.4:12153556-12153575 | MS.gene27946:CDS | 30.0% |
| ! | TTGGTTAAGCAGATTTTTAC+TGG | + | chr4.4:12153551-12153570 | MS.gene27946:CDS | 30.0% |
| AATGGGAAAAGCAACATACA+TGG | + | chr4.4:12153226-12153245 | MS.gene27946:CDS | 35.0% | |
| AATTTGATCGGACTTAGTGA+AGG | + | chr4.4:12153305-12153324 | MS.gene27946:CDS | 35.0% | |
| ATGGGAAAAGCAACATACAT+GGG | + | chr4.4:12153227-12153246 | MS.gene27946:CDS | 35.0% | |
| ATTGAAGAGAGAGGGAATTT+GGG | - | chr4.4:12152872-12152891 | None:intergenic | 35.0% | |
| TAGTGTTTGCAAAACGAAGT+GGG | + | chr4.4:12153330-12153349 | MS.gene27946:CDS | 35.0% | |
| TCAATCTACCTCGACAAAAA+CGG | + | chr4.4:12152984-12153003 | MS.gene27946:CDS | 35.0% | |
| TGGGAAGAGGATGATAAATA+AGG | + | chr4.4:12153421-12153440 | MS.gene27946:CDS | 35.0% | |
| TTACTGGTATGGTTGCTAAT+GGG | + | chr4.4:12153567-12153586 | MS.gene27946:CDS | 35.0% | |
| TTAGTGTTTGCAAAACGAAG+TGG | + | chr4.4:12153329-12153348 | MS.gene27946:CDS | 35.0% | |
| TTTACTGGTATGGTTGCTAA+TGG | + | chr4.4:12153566-12153585 | MS.gene27946:CDS | 35.0% | |
| ! | AAATAAGGATTTTAGGCCTG+GGG | + | chr4.4:12153436-12153455 | MS.gene27946:CDS | 35.0% |
| ! | GAGGTAGATTGATTTAACGT+CGG | - | chr4.4:12152976-12152995 | None:intergenic | 35.0% |
| ! | TAGATTGATTTAACGTCGGA+GGG | - | chr4.4:12152972-12152991 | None:intergenic | 35.0% |
| ! | TTTTAGCCATTCAACTACAG+AGG | - | chr4.4:12153192-12153211 | None:intergenic | 35.0% |
| !! | GCTTGACTTGAAGCAATTTT+TGG | + | chr4.4:12153352-12153371 | MS.gene27946:CDS | 35.0% |
| ACTATCGGAGCGAATTTGAT+CGG | + | chr4.4:12153293-12153312 | MS.gene27946:CDS | 40.0% | |
| CATTGGAGTTATTTGGGAAG+AGG | + | chr4.4:12153408-12153427 | MS.gene27946:CDS | 40.0% | |
| GAGATTTCTTTAGCGAGATC+TGG | - | chr4.4:12153065-12153084 | None:intergenic | 40.0% | |
| GATTGAAGAGAGAGGGAATT+TGG | - | chr4.4:12152873-12152892 | None:intergenic | 40.0% | |
| TACTGGTATGGTTGCTAATG+GGG | + | chr4.4:12153568-12153587 | MS.gene27946:CDS | 40.0% | |
| TGCAATTAAGAATGGTGCAG+CGG | + | chr4.4:12153376-12153395 | MS.gene27946:CDS | 40.0% | |
| TGGGAAAAGCAACATACATG+GGG | + | chr4.4:12153228-12153247 | MS.gene27946:CDS | 40.0% | |
| ! | AATAAGGATTTTAGGCCTGG+GGG | + | chr4.4:12153437-12153456 | MS.gene27946:CDS | 40.0% |
| ! | AGATTGATTTAACGTCGGAG+GGG | - | chr4.4:12152971-12152990 | None:intergenic | 40.0% |
| ! | GTAGATTGATTTAACGTCGG+AGG | - | chr4.4:12152973-12152992 | None:intergenic | 40.0% |
| !! | ACGAAGGCATTGGAGTTATT+TGG | + | chr4.4:12153401-12153420 | MS.gene27946:CDS | 40.0% |
| !! | CGAAGGCATTGGAGTTATTT+GGG | + | chr4.4:12153402-12153421 | MS.gene27946:CDS | 40.0% |
| !!! | GATGAAGTTGTTGTTTTGCC+TGG | + | chr4.4:12153521-12153540 | MS.gene27946:CDS | 40.0% |
| AGAGGGAATTTGGGTGAGAT+GGG | - | chr4.4:12152863-12152882 | None:intergenic | 45.0% | |
| CAATTAAGAATGGTGCAGCG+GGG | + | chr4.4:12153378-12153397 | MS.gene27946:CDS | 45.0% | |
| GCAATTAAGAATGGTGCAGC+GGG | + | chr4.4:12153377-12153396 | MS.gene27946:CDS | 45.0% | |
| GGAAGGTGAATTTGCGAGTT+TGG | - | chr4.4:12152904-12152923 | None:intergenic | 45.0% | |
| GGGAAAAGCAACATACATGG+GGG | + | chr4.4:12153229-12153248 | MS.gene27946:CDS | 45.0% | |
| GTATGGTTGCTAATGGGGAT+GGG | + | chr4.4:12153573-12153592 | MS.gene27946:CDS | 45.0% | |
| GTGAAGCCTCTGTAGTTGAA+TGG | + | chr4.4:12153183-12153202 | MS.gene27946:CDS | 45.0% | |
| GTGTCTACAGTGACAGTGTT+GGG | - | chr4.4:12153029-12153048 | None:intergenic | 45.0% | |
| TAGCACGAGTTAAATCCGCT+TGG | + | chr4.4:12153090-12153109 | MS.gene27946:CDS | 45.0% | |
| TGTCTACAGTGACAGTGTTG+GGG | - | chr4.4:12153028-12153047 | None:intergenic | 45.0% | |
| TTCAACTACAGAGGCTTCAC+CGG | - | chr4.4:12153183-12153202 | None:intergenic | 45.0% | |
| ! | AGCGGATTTAACTCGTGCTA+CGG | - | chr4.4:12153090-12153109 | None:intergenic | 45.0% |
| ! | GTAGAAGGTGAGAGTGTAAC+CGG | - | chr4.4:12152832-12152851 | None:intergenic | 45.0% |
| ! | TGTTTTGCCTGGTGCTTCTT+TGG | + | chr4.4:12153532-12153551 | MS.gene27946:CDS | 45.0% |
| !! | TGCTTAACCAAAGAAGCACC+AGG | - | chr4.4:12153542-12153561 | None:intergenic | 45.0% |
| !!! | AAACGATGCCGTTTTTGTCG+AGG | - | chr4.4:12152995-12153014 | None:intergenic | 45.0% |
| AAACTAGCAATCTTCGCCGC+CGG | + | chr4.4:12153161-12153180 | MS.gene27946:CDS | 50.0% | |
| ATGGATCGGAATCGGAGTGA+TGG | + | chr4.4:12152776-12152795 | MS.gene27946:CDS | 50.0% | |
| CGAATCGGATGGATCGGAAT+CGG | + | chr4.4:12152768-12152787 | MS.gene27946:CDS | 50.0% | |
| CGATTCCGATCCATCCGATT+CGG | - | chr4.4:12152770-12152789 | None:intergenic | 50.0% | |
| GAGAGGGAATTTGGGTGAGA+TGG | - | chr4.4:12152864-12152883 | None:intergenic | 50.0% | |
| GAGATCTGGATGTGAGCTTG+TGG | - | chr4.4:12153051-12153070 | None:intergenic | 50.0% | |
| GAGCATGGTGAAAACGACGT+CGG | - | chr4.4:12152943-12152962 | None:intergenic | 50.0% | |
| GATTCCGATCCATCCGATTC+GGG | - | chr4.4:12152769-12152788 | None:intergenic | 50.0% | |
| GGATTTAACTCGTGCTACGG+CGG | - | chr4.4:12153087-12153106 | None:intergenic | 50.0% | |
| GGTATGGTTGCTAATGGGGA+TGG | + | chr4.4:12153572-12153591 | MS.gene27946:CDS | 50.0% | |
| GGTGTCTACAGTGACAGTGT+TGG | - | chr4.4:12153030-12153049 | None:intergenic | 50.0% | |
| TCAATCGATGCTCCGGTATC+CGG | + | chr4.4:12153113-12153132 | MS.gene27946:CDS | 50.0% | |
| TCCCTCTCTCTTCAATCCCT+CGG | + | chr4.4:12152876-12152895 | MS.gene27946:CDS | 50.0% | |
| TGATACTCAGCATAACCCCC+AGG | - | chr4.4:12153455-12153474 | None:intergenic | 50.0% | |
| TGGATCGGAATCGGAGTGAT+GGG | + | chr4.4:12152777-12152796 | MS.gene27946:CDS | 50.0% | |
| TGGATGCGGTGATTGGGTTT+GGG | - | chr4.4:12152743-12152762 | None:intergenic | 50.0% | |
| !! | GACGTCGTTTTCACCATGCT+CGG | + | chr4.4:12152942-12152961 | MS.gene27946:CDS | 50.0% |
| AACTACAGAGGCTTCACCGG+CGG | - | chr4.4:12153180-12153199 | None:intergenic | 55.0% | |
| AATGGGGATGGGAAGCTTGG+TGG | + | chr4.4:12153584-12153603 | MS.gene27946:CDS | 55.0% | |
| AATTTGCGAGTTTGGCGCCG+AGG | - | chr4.4:12152896-12152915 | None:intergenic | 55.0% | |
| ACGACCCGAATCGGATGGAT+CGG | + | chr4.4:12152762-12152781 | MS.gene27946:CDS | 55.0% | |
| CATGGTGAAAACGACGTCGG+AGG | - | chr4.4:12152940-12152959 | None:intergenic | 55.0% | |
| CGCTTGGTCAATCGATGCTC+CGG | + | chr4.4:12153106-12153125 | MS.gene27946:CDS | 55.0% | |
| GAGGAGTTAGCGAGATGGGA+AGG | - | chr4.4:12152921-12152940 | None:intergenic | 55.0% | |
| GCAACATACATGGGGGCTAG+TGG | + | chr4.4:12153236-12153255 | MS.gene27946:CDS | 55.0% | |
| GCCGAGGGATTGAAGAGAGA+GGG | - | chr4.4:12152880-12152899 | None:intergenic | 55.0% | |
| GCTAATGGGGATGGGAAGCT+TGG | + | chr4.4:12153581-12153600 | MS.gene27946:CDS | 55.0% | |
| GGGGATATCGGAGCAAGAGA+CGG | + | chr4.4:12153137-12153156 | MS.gene27946:CDS | 55.0% | |
| GTCGGAGGAGTTAGCGAGAT+GGG | - | chr4.4:12152925-12152944 | None:intergenic | 55.0% | |
| GTGGATGCGGTGATTGGGTT+TGG | - | chr4.4:12152744-12152763 | None:intergenic | 55.0% | |
| TCTTGCTCCGATATCCCCAC+CGG | - | chr4.4:12153135-12153154 | None:intergenic | 55.0% | |
| ! | ATCGGAATCGGAGTGATGGG+CGG | + | chr4.4:12152780-12152799 | MS.gene27946:CDS | 55.0% |
| ! | ATTTGCGAGTTTGGCGCCGA+GGG | - | chr4.4:12152895-12152914 | None:intergenic | 55.0% |
| ! | GAAGGTGAGAGTGTAACCGG+CGG | - | chr4.4:12152829-12152848 | None:intergenic | 55.0% |
| ! | GATGGGAAGCTTGGTGGTCA+AGG | + | chr4.4:12153590-12153609 | MS.gene27946:CDS | 55.0% |
| ! | TACATGGGGGCTAGTGGATG+TGG | + | chr4.4:12153242-12153261 | MS.gene27946:CDS | 55.0% |
| !! | AGATGGGTTGCGAGCGTAGA+AGG | - | chr4.4:12152847-12152866 | None:intergenic | 55.0% |
| !! | CGGAGCATCGATTGACCAAG+CGG | - | chr4.4:12153108-12153127 | None:intergenic | 55.0% |
| ACCGCATCCACGACCCGAAT+CGG | + | chr4.4:12152753-12152772 | MS.gene27946:CDS | 60.0% | |
| ATCGATGCTCCGGTATCCGG+TGG | + | chr4.4:12153116-12153135 | MS.gene27946:CDS | 60.0% | |
| CATCCACGACCCGAATCGGA+TGG | + | chr4.4:12152757-12152776 | MS.gene27946:CDS | 60.0% | |
| CCGATATCCCCACCGGATAC+CGG | - | chr4.4:12153128-12153147 | None:intergenic | 60.0% | |
| CCGGTATCCGGTGGGGATAT+CGG | + | chr4.4:12153125-12153144 | MS.gene27946:CDS | 60.0% | |
| CGCCGAGGGATTGAAGAGAG+AGG | - | chr4.4:12152881-12152900 | None:intergenic | 60.0% | |
| CGTCGGAGGAGTTAGCGAGA+TGG | - | chr4.4:12152926-12152945 | None:intergenic | 60.0% | |
| GGGTCGTGGATGCGGTGATT+GGG | - | chr4.4:12152749-12152768 | None:intergenic | 60.0% | |
| TCGATGCTCCGGTATCCGGT+GGG | + | chr4.4:12153117-12153136 | MS.gene27946:CDS | 60.0% | |
| !! | GATCCATCCGATTCGGGTCG+TGG | - | chr4.4:12152763-12152782 | None:intergenic | 60.0% |
| !! | TCCGATTCGGGTCGTGGATG+CGG | - | chr4.4:12152757-12152776 | None:intergenic | 60.0% |
| CGATGCTCCGGTATCCGGTG+GGG | + | chr4.4:12153118-12153137 | MS.gene27946:CDS | 65.0% | |
| CGGGTCGTGGATGCGGTGAT+TGG | - | chr4.4:12152750-12152769 | None:intergenic | 65.0% | |
| GAATGGTGCAGCGGGGACGA+AGG | + | chr4.4:12153385-12153404 | MS.gene27946:CDS | 65.0% | |
| ! | TGCAGCGGGGACGAAGGCAT+TGG | + | chr4.4:12153391-12153410 | MS.gene27946:CDS | 65.0% |
| ACCGGCGGAGATGACGCGTG+AGG | - | chr4.4:12152814-12152833 | None:intergenic | 70.0% | |
| GCCTCACGCGTCATCTCCGC+CGG | + | chr4.4:12152810-12152829 | MS.gene27946:CDS | 70.0% | |
| GTCGGAGGGGTGACCGAGCA+TGG | - | chr4.4:12152958-12152977 | None:intergenic | 70.0% | |
| !! | CGGAGTGATGGGCGGCGCAA+TGG | + | chr4.4:12152788-12152807 | MS.gene27946:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 12152726 | 12153649 | 12152726 | ID=MS.gene27946 |
| chr4.4 | mRNA | 12152726 | 12153649 | 12152726 | ID=MS.gene27946.t1;Parent=MS.gene27946 |
| chr4.4 | exon | 12152726 | 12153649 | 12152726 | ID=MS.gene27946.t1.exon1;Parent=MS.gene27946.t1 |
| chr4.4 | CDS | 12152726 | 12153649 | 12152726 | ID=cds.MS.gene27946.t1;Parent=MS.gene27946.t1 |
| Gene Sequence |
| Protein sequence |
