Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030927.t1 | XP_024627482.1 | 94.5 | 307 | 17 | 0 | 1 | 307 | 1 | 307 | 2.00E-160 | 575.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030927.t1 | Q949M8 | 54.9 | 306 | 127 | 2 | 1 | 306 | 22 | 316 | 8.2e-91 | 335.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030927.t1 | G7L8W3 | 94.5 | 307 | 17 | 0 | 1 | 307 | 1 | 307 | 1.4e-160 | 575.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030927 | MS.gene049066 | PPI |
| MS.gene030927 | MS.gene92143 | PPI |
| MS.gene030927 | MS.gene003315 | PPI |
| MS.gene47905 | MS.gene030927 | PPI |
| MS.gene030927 | MS.gene47905 | PPI |
| MS.gene05985 | MS.gene030927 | PPI |
| MS.gene030927 | MS.gene79722 | PPI |
| MS.gene030927 | MS.gene74531 | PPI |
| MS.gene030927 | MS.gene02110 | PPI |
| MS.gene030927 | MS.gene03058 | PPI |
| MS.gene030927 | MS.gene59608 | PPI |
| MS.gene67218 | MS.gene030927 | PPI |
| MS.gene98170 | MS.gene030927 | PPI |
| MS.gene030927 | MS.gene27946 | PPI |
| MS.gene015821 | MS.gene030927 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030927.t1 | MTR_8g088900 | 94.463 | 307 | 17 | 0 | 1 | 307 | 1 | 307 | 0.0 | 592 |
| MS.gene030927.t1 | MTR_8g102470 | 50.333 | 300 | 143 | 3 | 7 | 305 | 5 | 299 | 1.53e-98 | 292 |
| MS.gene030927.t1 | MTR_8g102470 | 50.333 | 300 | 143 | 3 | 7 | 305 | 29 | 323 | 4.00e-98 | 292 |
| MS.gene030927.t1 | MTR_2g099910 | 31.890 | 254 | 170 | 2 | 10 | 262 | 42 | 293 | 4.63e-36 | 132 |
| MS.gene030927.t1 | MTR_2g099910 | 34.483 | 203 | 130 | 2 | 10 | 211 | 42 | 242 | 1.13e-30 | 116 |
| MS.gene030927.t1 | MTR_8g028120 | 27.755 | 245 | 173 | 3 | 15 | 258 | 2 | 243 | 7.14e-30 | 115 |
| MS.gene030927.t1 | MTR_2g099910 | 33.690 | 187 | 121 | 2 | 10 | 195 | 42 | 226 | 3.01e-25 | 101 |
| MS.gene030927.t1 | MTR_6g069685 | 24.671 | 304 | 218 | 5 | 9 | 306 | 318 | 616 | 1.44e-21 | 95.5 |
| MS.gene030927.t1 | MTR_2g030400 | 25.914 | 301 | 196 | 9 | 9 | 288 | 35 | 329 | 2.05e-20 | 90.5 |
| MS.gene030927.t1 | MTR_2g030400 | 30.144 | 209 | 129 | 7 | 16 | 210 | 42 | 247 | 3.99e-20 | 88.6 |
| MS.gene030927.t1 | MTR_2g030400 | 26.894 | 264 | 169 | 8 | 16 | 258 | 42 | 302 | 4.18e-20 | 89.0 |
| MS.gene030927.t1 | MTR_2g030400 | 30.144 | 209 | 129 | 7 | 16 | 210 | 42 | 247 | 4.37e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030927.t1 | AT1G71180 | 54.902 | 306 | 127 | 2 | 1 | 306 | 22 | 316 | 1.21e-103 | 306 |
| MS.gene030927.t1 | AT1G71170 | 53.268 | 306 | 134 | 2 | 1 | 306 | 1 | 297 | 7.85e-103 | 303 |
| MS.gene030927.t1 | AT4G29120 | 47.987 | 298 | 149 | 3 | 9 | 305 | 33 | 325 | 1.19e-95 | 286 |
| MS.gene030927.t1 | AT3G25530 | 27.431 | 288 | 203 | 3 | 15 | 301 | 2 | 284 | 6.10e-31 | 117 |
| MS.gene030927.t1 | AT1G17650 | 29.644 | 253 | 171 | 4 | 13 | 262 | 7 | 255 | 7.67e-30 | 115 |
| MS.gene030927.t1 | AT1G17650 | 29.644 | 253 | 171 | 4 | 13 | 262 | 66 | 314 | 2.82e-29 | 115 |
| MS.gene030927.t1 | AT3G25530 | 28.472 | 288 | 189 | 5 | 15 | 301 | 2 | 273 | 9.21e-27 | 106 |
| MS.gene030927.t1 | AT3G25530 | 29.126 | 206 | 143 | 2 | 15 | 219 | 2 | 205 | 3.87e-26 | 103 |
| MS.gene030927.t1 | AT1G18270 | 25.000 | 296 | 213 | 4 | 15 | 306 | 323 | 613 | 1.29e-21 | 95.9 |
| MS.gene030927.t1 | AT1G18270 | 25.000 | 296 | 213 | 4 | 15 | 306 | 324 | 614 | 1.29e-21 | 95.9 |
| MS.gene030927.t1 | AT1G18270 | 25.000 | 296 | 213 | 4 | 15 | 306 | 323 | 613 | 1.43e-21 | 95.5 |
| MS.gene030927.t1 | AT1G18270 | 25.000 | 296 | 213 | 4 | 15 | 306 | 323 | 613 | 1.51e-21 | 95.5 |
| MS.gene030927.t1 | AT4G20930 | 28.440 | 218 | 139 | 7 | 16 | 219 | 40 | 254 | 3.09e-19 | 87.0 |
| MS.gene030927.t1 | AT4G20930 | 27.684 | 177 | 113 | 6 | 57 | 219 | 7 | 182 | 9.92e-14 | 70.5 |
Find 105 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGAAGAGAGAGGGAATT+TGG | 0.129204 | 4.3:-11321267 | None:intergenic |
| ACGAAGGCATTGGAGTTATT+TGG | 0.151791 | 4.3:+11321798 | MS.gene030927:CDS |
| AAAACCGTTGTTTGAAATAA+TGG | 0.184681 | 4.3:+11321605 | MS.gene030927:CDS |
| GGAAGGTGAATTTGCGAGTT+TGG | 0.245854 | 4.3:-11321298 | None:intergenic |
| GGATGATAAATAAGGATTTC+AGG | 0.252494 | 4.3:+11321826 | MS.gene030927:CDS |
| GTGGATGCGGTGATTGGGTT+TGG | 0.265810 | 4.3:-11321138 | None:intergenic |
| GAGTATCAAGTTAAGGATTT+AGG | 0.269336 | 4.3:+11321864 | MS.gene030927:CDS |
| TGGGAAGAGGATGATAAATA+AGG | 0.295134 | 4.3:+11321818 | MS.gene030927:CDS |
| CGGGTCGTGGATGCGGTGAT+TGG | 0.303864 | 4.3:-11321144 | None:intergenic |
| TCTGTTATTGATAGGATTAA+TGG | 0.305673 | 4.3:+11322017 | MS.gene030927:CDS |
| TTTACTGGTATGGTTGCTAA+TGG | 0.309860 | 4.3:+11321963 | MS.gene030927:CDS |
| AAACCGTTGTTTGAAATAAT+GGG | 0.320966 | 4.3:+11321606 | MS.gene030927:CDS |
| CGAAGGCATTGGAGTTATTT+GGG | 0.322668 | 4.3:+11321799 | MS.gene030927:CDS |
| GTGTTATTTCTGTTATTGAT+AGG | 0.359139 | 4.3:+11322009 | MS.gene030927:CDS |
| ATTGAAGAGAGAGGGAATTT+GGG | 0.361420 | 4.3:-11321266 | None:intergenic |
| GAGAGGGAATTTGGGTGAGA+TGG | 0.361588 | 4.3:-11321258 | None:intergenic |
| TTACTGGTATGGTTGCTAAT+GGG | 0.372029 | 4.3:+11321964 | MS.gene030927:CDS |
| AGAGGGAATTTGGGTGAGAT+GGG | 0.383239 | 4.3:-11321257 | None:intergenic |
| CCGGTATCCGGTGGGGATAT+CGG | 0.383577 | 4.3:+11321522 | MS.gene030927:CDS |
| GAGATTTCTTTAGCGAGATC+TGG | 0.387363 | 4.3:-11321459 | None:intergenic |
| TGGATGCGGTGATTGGGTTT+GGG | 0.390118 | 4.3:-11321137 | None:intergenic |
| AGATGGGTTGCGAGCGTAGA+AGG | 0.390367 | 4.3:-11321241 | None:intergenic |
| GTGTCTACAGTGACAGTGTT+GGG | 0.392820 | 4.3:-11321423 | None:intergenic |
| CGATTCCGATCCATCCGATT+CGG | 0.405924 | 4.3:-11321164 | None:intergenic |
| CAAGTTAAGGATTTAGGAAT+GGG | 0.417548 | 4.3:+11321870 | MS.gene030927:CDS |
| GCTAATGGGGATGGGAAGCT+TGG | 0.420897 | 4.3:+11321978 | MS.gene030927:CDS |
| ACCGCATCCACGACCCGAAT+CGG | 0.445574 | 4.3:+11321150 | MS.gene030927:CDS |
| GATTCCGATCCATCCGATTC+GGG | 0.447335 | 4.3:-11321163 | None:intergenic |
| ATAAATAAGGATTTCAGGCC+TGG | 0.449978 | 4.3:+11321831 | MS.gene030927:CDS |
| TCAATCGATGCTCCGGTATC+CGG | 0.450145 | 4.3:+11321510 | MS.gene030927:CDS |
| TCCGATTCGGGTCGTGGATG+CGG | 0.460578 | 4.3:-11321151 | None:intergenic |
| TTATGCTGAGTATCAAGTTA+AGG | 0.464856 | 4.3:+11321857 | MS.gene030927:CDS |
| CATTGGAGTTATTTGGGAAG+AGG | 0.466061 | 4.3:+11321805 | MS.gene030927:CDS |
| GATCCATCCGATTCGGGTCG+TGG | 0.466090 | 4.3:-11321157 | None:intergenic |
| GATGGGAAGCTTGGTGGTCA+AGG | 0.474146 | 4.3:+11321987 | MS.gene030927:CDS |
| GGGTCGTGGATGCGGTGATT+GGG | 0.482315 | 4.3:-11321143 | None:intergenic |
| GCAATTAAGAATGGTGCAGC+GGG | 0.484227 | 4.3:+11321774 | MS.gene030927:CDS |
| CCGATATCCCCACCGGATAC+CGG | 0.488724 | 4.3:-11321522 | None:intergenic |
| TCAAGTTAAGGATTTAGGAA+TGG | 0.488927 | 4.3:+11321869 | MS.gene030927:CDS |
| CGCTTGGTCAATCGATGCTC+CGG | 0.491216 | 4.3:+11321503 | MS.gene030927:CDS |
| GTCGGAGGAGTTAGCGAGAT+GGG | 0.496377 | 4.3:-11321319 | None:intergenic |
| TGGATCGGAATCGGAGTGAT+GGG | 0.497760 | 4.3:+11321174 | MS.gene030927:CDS |
| GTAGAAGGTGAGAGTGTAAC+CGG | 0.498278 | 4.3:-11321226 | None:intergenic |
| AAAACGAAGTGGGCTTGACT+TGG | 0.512591 | 4.3:+11321737 | MS.gene030927:CDS |
| TACTGGTATGGTTGCTAATG+GGG | 0.513602 | 4.3:+11321965 | MS.gene030927:CDS |
| ATGGATCGGAATCGGAGTGA+TGG | 0.514720 | 4.3:+11321173 | MS.gene030927:CDS |
| TAAATAAGGATTTCAGGCCT+GGG | 0.516692 | 4.3:+11321832 | MS.gene030927:CDS |
| TTCAACTACAGAGGCTTCAC+CGG | 0.516853 | 4.3:-11321577 | None:intergenic |
| CGGAGTGATGGGCGGCGCAA+TGG | 0.519149 | 4.3:+11321185 | MS.gene030927:CDS |
| TGCAGCGGGGACGAAGGCAT+TGG | 0.519441 | 4.3:+11321788 | MS.gene030927:CDS |
| TGCAATTAAGAATGGTGCAG+CGG | 0.524648 | 4.3:+11321773 | MS.gene030927:CDS |
| CGAATCGGATGGATCGGAAT+CGG | 0.525123 | 4.3:+11321165 | MS.gene030927:CDS |
| ATCGATGCTCCGGTATCCGG+TGG | 0.526643 | 4.3:+11321513 | MS.gene030927:CDS |
| AATGGGAAAAGCAACATACA+TGG | 0.530781 | 4.3:+11321623 | MS.gene030927:CDS |
| AATGGGGATGGGAAGCTTGG+TGG | 0.531606 | 4.3:+11321981 | MS.gene030927:CDS |
| GCCTCACGCGTCATCTCCGC+CGG | 0.539648 | 4.3:+11321207 | MS.gene030927:CDS |
| TGTTGAAGGTGGTGATGATG+AGG | 0.540375 | 4.3:+11321902 | MS.gene030927:CDS |
| GTCGGAGGGGTGACCGAGCA+TGG | 0.541540 | 4.3:-11321352 | None:intergenic |
| GTGAAGCCTCTGTAGTTGAA+TGG | 0.543870 | 4.3:+11321580 | MS.gene030927:CDS |
| TAGATTGATTTAACGTCGGA+GGG | 0.549674 | 4.3:-11321366 | None:intergenic |
| CGTCGGAGGAGTTAGCGAGA+TGG | 0.558276 | 4.3:-11321320 | None:intergenic |
| GTATGGTTGCTAATGGGGAT+GGG | 0.563707 | 4.3:+11321970 | MS.gene030927:CDS |
| ATGGGAAAAGCAACATACAT+GGG | 0.566603 | 4.3:+11321624 | MS.gene030927:CDS |
| TCCCTCTCTCTTCAATACCT+CGG | 0.574178 | 4.3:+11321273 | MS.gene030927:CDS |
| GGTATGGTTGCTAATGGGGA+TGG | 0.581616 | 4.3:+11321969 | MS.gene030927:CDS |
| TCGATGCTCCGGTATCCGGT+GGG | 0.582749 | 4.3:+11321514 | MS.gene030927:CDS |
| TTTCCCATTATTTCAAACAA+CGG | 0.582825 | 4.3:-11321609 | None:intergenic |
| TAGTGTTTGCAAAACGAAGT+GGG | 0.586049 | 4.3:+11321727 | MS.gene030927:CDS |
| AGCGGATTTAACTCGTGCTA+CGG | 0.586888 | 4.3:-11321484 | None:intergenic |
| GAATGGTGCAGCGGGGACGA+AGG | 0.592089 | 4.3:+11321782 | MS.gene030927:CDS |
| CATCCACGACCCGAATCGGA+TGG | 0.595417 | 4.3:+11321154 | MS.gene030927:CDS |
| GTAGATTGATTTAACGTCGG+AGG | 0.596473 | 4.3:-11321367 | None:intergenic |
| AATTTGATCGGACTTAGTGA+AGG | 0.602083 | 4.3:+11321702 | MS.gene030927:CDS |
| ACTATCGGAGCGAATTTGAT+CGG | 0.602735 | 4.3:+11321690 | MS.gene030927:CDS |
| GGGGATATCGGAGCAAGAGA+CGG | 0.602736 | 4.3:+11321534 | MS.gene030927:CDS |
| AAATAAGGATTTCAGGCCTG+GGG | 0.604446 | 4.3:+11321833 | MS.gene030927:CDS |
| GGTGTCTACAGTGACAGTGT+TGG | 0.605447 | 4.3:-11321424 | None:intergenic |
| GCCGAGGTATTGAAGAGAGA+GGG | 0.606244 | 4.3:-11321274 | None:intergenic |
| AAACTAGCAATCTTCGCCGC+CGG | 0.607107 | 4.3:+11321558 | MS.gene030927:CDS |
| ACGACCCGAATCGGATGGAT+CGG | 0.611681 | 4.3:+11321159 | MS.gene030927:CDS |
| GAGGAGTTAGCGAGATGGGA+AGG | 0.613168 | 4.3:-11321315 | None:intergenic |
| ATAGCGAATCAGATAACTAT+CGG | 0.617551 | 4.3:+11321675 | MS.gene030927:CDS |
| TGCTTAACCAAAGAAGCACC+AGG | 0.620317 | 4.3:-11321936 | None:intergenic |
| AATTTGCGAGTTTGGCGCCG+AGG | 0.625882 | 4.3:-11321290 | None:intergenic |
| CGCCGAGGTATTGAAGAGAG+AGG | 0.626412 | 4.3:-11321275 | None:intergenic |
| TGTCTACAGTGACAGTGTTG+GGG | 0.629152 | 4.3:-11321422 | None:intergenic |
| CGATGCTCCGGTATCCGGTG+GGG | 0.630682 | 4.3:+11321515 | MS.gene030927:CDS |
| AACTACAGAGGCTTCACCGG+CGG | 0.632581 | 4.3:-11321574 | None:intergenic |
| GGATTTAACTCGTGCTACGG+CGG | 0.633686 | 4.3:-11321481 | None:intergenic |
| TTAGTGTTTGCAAAACGAAG+TGG | 0.638669 | 4.3:+11321726 | MS.gene030927:CDS |
| TAGCACGAGTTAAATCCGCT+TGG | 0.644480 | 4.3:+11321487 | MS.gene030927:CDS |
| ATCGGAATCGGAGTGATGGG+CGG | 0.645915 | 4.3:+11321177 | MS.gene030927:CDS |
| TGGGAAAAGCAACATACATG+GGG | 0.646047 | 4.3:+11321625 | MS.gene030927:CDS |
| CGGAGCATCGATTGACCAAG+CGG | 0.652137 | 4.3:-11321502 | None:intergenic |
| TCTTGCTCCGATATCCCCAC+CGG | 0.654538 | 4.3:-11321529 | None:intergenic |
| GAGGTAGATTGATTTAACGT+CGG | 0.660666 | 4.3:-11321370 | None:intergenic |
| ACCGGCGGAGATGACGCGTG+AGG | 0.674463 | 4.3:-11321208 | None:intergenic |
| CATGGTGAAAACGACGTCGG+AGG | 0.675042 | 4.3:-11321334 | None:intergenic |
| AGATTGATTTAACGTCGGAG+GGG | 0.675762 | 4.3:-11321365 | None:intergenic |
| GAGATCTGGATGTGAGCTTG+TGG | 0.680246 | 4.3:-11321445 | None:intergenic |
| AATAAGGATTTCAGGCCTGG+GGG | 0.682914 | 4.3:+11321834 | MS.gene030927:CDS |
| CAATTAAGAATGGTGCAGCG+GGG | 0.738040 | 4.3:+11321775 | MS.gene030927:CDS |
| GAGCATGGTGAAAACGACGT+CGG | 0.746260 | 4.3:-11321337 | None:intergenic |
| GGGAAAAGCAACATACATGG+GGG | 0.753851 | 4.3:+11321626 | MS.gene030927:CDS |
| GAAGGTGAGAGTGTAACCGG+CGG | 0.761972 | 4.3:-11321223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCTGTTATTGATAGGATTAA+TGG | + | chr4.3:11322017-11322036 | MS.gene030927:CDS | 25.0% |
| ! | TTTCCCATTATTTCAAACAA+CGG | - | chr4.3:11321612-11321631 | None:intergenic | 25.0% |
| !! | AAAACCGTTGTTTGAAATAA+TGG | + | chr4.3:11321605-11321624 | MS.gene030927:CDS | 25.0% |
| !! | AAACCGTTGTTTGAAATAAT+GGG | + | chr4.3:11321606-11321625 | MS.gene030927:CDS | 25.0% |
| !! | TTTTTGGATGCAATTAAGAA+TGG | + | chr4.3:11321765-11321784 | MS.gene030927:CDS | 25.0% |
| !!! | GTGTTATTTCTGTTATTGAT+AGG | + | chr4.3:11322009-11322028 | MS.gene030927:CDS | 25.0% |
| ATAGCGAATCAGATAACTAT+CGG | + | chr4.3:11321675-11321694 | MS.gene030927:CDS | 30.0% | |
| CAAGTTAAGGATTTAGGAAT+GGG | + | chr4.3:11321870-11321889 | MS.gene030927:CDS | 30.0% | |
| GAGTATCAAGTTAAGGATTT+AGG | + | chr4.3:11321864-11321883 | MS.gene030927:CDS | 30.0% | |
| GGATGATAAATAAGGATTTC+AGG | + | chr4.3:11321826-11321845 | MS.gene030927:CDS | 30.0% | |
| TCAAGTTAAGGATTTAGGAA+TGG | + | chr4.3:11321869-11321888 | MS.gene030927:CDS | 30.0% | |
| TTATGCTGAGTATCAAGTTA+AGG | + | chr4.3:11321857-11321876 | MS.gene030927:CDS | 30.0% | |
| ! | ATGGGTGTTAATTTTGTTGA+AGG | + | chr4.3:11321888-11321907 | MS.gene030927:CDS | 30.0% |
| ! | TAAGCAGATTTTTACTGGTA+TGG | + | chr4.3:11321953-11321972 | MS.gene030927:CDS | 30.0% |
| ! | TTGGTTAAGCAGATTTTTAC+TGG | + | chr4.3:11321948-11321967 | MS.gene030927:CDS | 30.0% |
| AATGGGAAAAGCAACATACA+TGG | + | chr4.3:11321623-11321642 | MS.gene030927:CDS | 35.0% | |
| AATTTGATCGGACTTAGTGA+AGG | + | chr4.3:11321702-11321721 | MS.gene030927:CDS | 35.0% | |
| ATAAATAAGGATTTCAGGCC+TGG | + | chr4.3:11321831-11321850 | MS.gene030927:CDS | 35.0% | |
| ATGGGAAAAGCAACATACAT+GGG | + | chr4.3:11321624-11321643 | MS.gene030927:CDS | 35.0% | |
| ATTGAAGAGAGAGGGAATTT+GGG | - | chr4.3:11321269-11321288 | None:intergenic | 35.0% | |
| TAAATAAGGATTTCAGGCCT+GGG | + | chr4.3:11321832-11321851 | MS.gene030927:CDS | 35.0% | |
| TAGTGTTTGCAAAACGAAGT+GGG | + | chr4.3:11321727-11321746 | MS.gene030927:CDS | 35.0% | |
| TATTGAAGAGAGAGGGAATT+TGG | - | chr4.3:11321270-11321289 | None:intergenic | 35.0% | |
| TCAATCTACCTCGACAAAAA+CGG | + | chr4.3:11321381-11321400 | MS.gene030927:CDS | 35.0% | |
| TGGGAAGAGGATGATAAATA+AGG | + | chr4.3:11321818-11321837 | MS.gene030927:CDS | 35.0% | |
| TTACTGGTATGGTTGCTAAT+GGG | + | chr4.3:11321964-11321983 | MS.gene030927:CDS | 35.0% | |
| TTAGTGTTTGCAAAACGAAG+TGG | + | chr4.3:11321726-11321745 | MS.gene030927:CDS | 35.0% | |
| TTTACTGGTATGGTTGCTAA+TGG | + | chr4.3:11321963-11321982 | MS.gene030927:CDS | 35.0% | |
| ! | GAGGTAGATTGATTTAACGT+CGG | - | chr4.3:11321373-11321392 | None:intergenic | 35.0% |
| ! | GGTGTTAATTTTGTTGAAGG+TGG | + | chr4.3:11321891-11321910 | MS.gene030927:CDS | 35.0% |
| ! | TAGATTGATTTAACGTCGGA+GGG | - | chr4.3:11321369-11321388 | None:intergenic | 35.0% |
| ! | TTTTAGCCATTCAACTACAG+AGG | - | chr4.3:11321589-11321608 | None:intergenic | 35.0% |
| AAATAAGGATTTCAGGCCTG+GGG | + | chr4.3:11321833-11321852 | MS.gene030927:CDS | 40.0% | |
| ACTATCGGAGCGAATTTGAT+CGG | + | chr4.3:11321690-11321709 | MS.gene030927:CDS | 40.0% | |
| CATTGGAGTTATTTGGGAAG+AGG | + | chr4.3:11321805-11321824 | MS.gene030927:CDS | 40.0% | |
| GAGATTTCTTTAGCGAGATC+TGG | - | chr4.3:11321462-11321481 | None:intergenic | 40.0% | |
| TACTGGTATGGTTGCTAATG+GGG | + | chr4.3:11321965-11321984 | MS.gene030927:CDS | 40.0% | |
| TGCAATTAAGAATGGTGCAG+CGG | + | chr4.3:11321773-11321792 | MS.gene030927:CDS | 40.0% | |
| TGGGAAAAGCAACATACATG+GGG | + | chr4.3:11321625-11321644 | MS.gene030927:CDS | 40.0% | |
| ! | AGATTGATTTAACGTCGGAG+GGG | - | chr4.3:11321368-11321387 | None:intergenic | 40.0% |
| ! | GTAGATTGATTTAACGTCGG+AGG | - | chr4.3:11321370-11321389 | None:intergenic | 40.0% |
| !! | ACGAAGGCATTGGAGTTATT+TGG | + | chr4.3:11321798-11321817 | MS.gene030927:CDS | 40.0% |
| !! | CGAAGGCATTGGAGTTATTT+GGG | + | chr4.3:11321799-11321818 | MS.gene030927:CDS | 40.0% |
| !!! | GCTTGACTTGGAGCAATTTT+TGG | + | chr4.3:11321749-11321768 | MS.gene030927:CDS | 40.0% |
| AATAAGGATTTCAGGCCTGG+GGG | + | chr4.3:11321834-11321853 | MS.gene030927:CDS | 45.0% | |
| AGAGGGAATTTGGGTGAGAT+GGG | - | chr4.3:11321260-11321279 | None:intergenic | 45.0% | |
| CAATTAAGAATGGTGCAGCG+GGG | + | chr4.3:11321775-11321794 | MS.gene030927:CDS | 45.0% | |
| GCAATTAAGAATGGTGCAGC+GGG | + | chr4.3:11321774-11321793 | MS.gene030927:CDS | 45.0% | |
| GGAAGGTGAATTTGCGAGTT+TGG | - | chr4.3:11321301-11321320 | None:intergenic | 45.0% | |
| GGGAAAAGCAACATACATGG+GGG | + | chr4.3:11321626-11321645 | MS.gene030927:CDS | 45.0% | |
| GTATGGTTGCTAATGGGGAT+GGG | + | chr4.3:11321970-11321989 | MS.gene030927:CDS | 45.0% | |
| GTGAAGCCTCTGTAGTTGAA+TGG | + | chr4.3:11321580-11321599 | MS.gene030927:CDS | 45.0% | |
| GTGTCTACAGTGACAGTGTT+GGG | - | chr4.3:11321426-11321445 | None:intergenic | 45.0% | |
| TAGCACGAGTTAAATCCGCT+TGG | + | chr4.3:11321487-11321506 | MS.gene030927:CDS | 45.0% | |
| TCCCTCTCTCTTCAATACCT+CGG | + | chr4.3:11321273-11321292 | MS.gene030927:CDS | 45.0% | |
| TGTCTACAGTGACAGTGTTG+GGG | - | chr4.3:11321425-11321444 | None:intergenic | 45.0% | |
| TTCAACTACAGAGGCTTCAC+CGG | - | chr4.3:11321580-11321599 | None:intergenic | 45.0% | |
| ! | AAAACGAAGTGGGCTTGACT+TGG | + | chr4.3:11321737-11321756 | MS.gene030927:CDS | 45.0% |
| ! | AGCGGATTTAACTCGTGCTA+CGG | - | chr4.3:11321487-11321506 | None:intergenic | 45.0% |
| ! | GTAGAAGGTGAGAGTGTAAC+CGG | - | chr4.3:11321229-11321248 | None:intergenic | 45.0% |
| ! | TGTTGAAGGTGGTGATGATG+AGG | + | chr4.3:11321902-11321921 | MS.gene030927:CDS | 45.0% |
| ! | TGTTTTGCCTGGTGCTTCTT+TGG | + | chr4.3:11321929-11321948 | MS.gene030927:CDS | 45.0% |
| !! | TGCTTAACCAAAGAAGCACC+AGG | - | chr4.3:11321939-11321958 | None:intergenic | 45.0% |
| !!! | AAACGATGCCGTTTTTGTCG+AGG | - | chr4.3:11321392-11321411 | None:intergenic | 45.0% |
| !!! | GATGAGGTTGTTGTTTTGCC+TGG | + | chr4.3:11321918-11321937 | MS.gene030927:CDS | 45.0% |
| AAACTAGCAATCTTCGCCGC+CGG | + | chr4.3:11321558-11321577 | MS.gene030927:CDS | 50.0% | |
| ATGGATCGGAATCGGAGTGA+TGG | + | chr4.3:11321173-11321192 | MS.gene030927:CDS | 50.0% | |
| CGAATCGGATGGATCGGAAT+CGG | + | chr4.3:11321165-11321184 | MS.gene030927:CDS | 50.0% | |
| CGATTCCGATCCATCCGATT+CGG | - | chr4.3:11321167-11321186 | None:intergenic | 50.0% | |
| GAGAGGGAATTTGGGTGAGA+TGG | - | chr4.3:11321261-11321280 | None:intergenic | 50.0% | |
| GAGATCTGGATGTGAGCTTG+TGG | - | chr4.3:11321448-11321467 | None:intergenic | 50.0% | |
| GAGCATGGTGAAAACGACGT+CGG | - | chr4.3:11321340-11321359 | None:intergenic | 50.0% | |
| GATTCCGATCCATCCGATTC+GGG | - | chr4.3:11321166-11321185 | None:intergenic | 50.0% | |
| GGATTTAACTCGTGCTACGG+CGG | - | chr4.3:11321484-11321503 | None:intergenic | 50.0% | |
| GGTATGGTTGCTAATGGGGA+TGG | + | chr4.3:11321969-11321988 | MS.gene030927:CDS | 50.0% | |
| GGTGTCTACAGTGACAGTGT+TGG | - | chr4.3:11321427-11321446 | None:intergenic | 50.0% | |
| TCAATCGATGCTCCGGTATC+CGG | + | chr4.3:11321510-11321529 | MS.gene030927:CDS | 50.0% | |
| TGATACTCAGCATAACCCCC+AGG | - | chr4.3:11321852-11321871 | None:intergenic | 50.0% | |
| TGGATCGGAATCGGAGTGAT+GGG | + | chr4.3:11321174-11321193 | MS.gene030927:CDS | 50.0% | |
| TGGATGCGGTGATTGGGTTT+GGG | - | chr4.3:11321140-11321159 | None:intergenic | 50.0% | |
| !! | GACGTCGTTTTCACCATGCT+CGG | + | chr4.3:11321339-11321358 | MS.gene030927:CDS | 50.0% |
| !! | GCCGAGGTATTGAAGAGAGA+GGG | - | chr4.3:11321277-11321296 | None:intergenic | 50.0% |
| AACTACAGAGGCTTCACCGG+CGG | - | chr4.3:11321577-11321596 | None:intergenic | 55.0% | |
| AATGGGGATGGGAAGCTTGG+TGG | + | chr4.3:11321981-11322000 | MS.gene030927:CDS | 55.0% | |
| AATTTGCGAGTTTGGCGCCG+AGG | - | chr4.3:11321293-11321312 | None:intergenic | 55.0% | |
| ACGACCCGAATCGGATGGAT+CGG | + | chr4.3:11321159-11321178 | MS.gene030927:CDS | 55.0% | |
| CATGGTGAAAACGACGTCGG+AGG | - | chr4.3:11321337-11321356 | None:intergenic | 55.0% | |
| CGCTTGGTCAATCGATGCTC+CGG | + | chr4.3:11321503-11321522 | MS.gene030927:CDS | 55.0% | |
| GAGGAGTTAGCGAGATGGGA+AGG | - | chr4.3:11321318-11321337 | None:intergenic | 55.0% | |
| GCAACATACATGGGGGCTAG+TGG | + | chr4.3:11321633-11321652 | MS.gene030927:CDS | 55.0% | |
| GCTAATGGGGATGGGAAGCT+TGG | + | chr4.3:11321978-11321997 | MS.gene030927:CDS | 55.0% | |
| GGGGATATCGGAGCAAGAGA+CGG | + | chr4.3:11321534-11321553 | MS.gene030927:CDS | 55.0% | |
| GTCGGAGGAGTTAGCGAGAT+GGG | - | chr4.3:11321322-11321341 | None:intergenic | 55.0% | |
| GTGGATGCGGTGATTGGGTT+TGG | - | chr4.3:11321141-11321160 | None:intergenic | 55.0% | |
| TCTTGCTCCGATATCCCCAC+CGG | - | chr4.3:11321532-11321551 | None:intergenic | 55.0% | |
| ! | ATCGGAATCGGAGTGATGGG+CGG | + | chr4.3:11321177-11321196 | MS.gene030927:CDS | 55.0% |
| ! | GAAGGTGAGAGTGTAACCGG+CGG | - | chr4.3:11321226-11321245 | None:intergenic | 55.0% |
| ! | GATGGGAAGCTTGGTGGTCA+AGG | + | chr4.3:11321987-11322006 | MS.gene030927:CDS | 55.0% |
| ! | TACATGGGGGCTAGTGGATG+TGG | + | chr4.3:11321639-11321658 | MS.gene030927:CDS | 55.0% |
| !! | AGATGGGTTGCGAGCGTAGA+AGG | - | chr4.3:11321244-11321263 | None:intergenic | 55.0% |
| !! | CGCCGAGGTATTGAAGAGAG+AGG | - | chr4.3:11321278-11321297 | None:intergenic | 55.0% |
| !! | CGGAGCATCGATTGACCAAG+CGG | - | chr4.3:11321505-11321524 | None:intergenic | 55.0% |
| ACCGCATCCACGACCCGAAT+CGG | + | chr4.3:11321150-11321169 | MS.gene030927:CDS | 60.0% | |
| ATCGATGCTCCGGTATCCGG+TGG | + | chr4.3:11321513-11321532 | MS.gene030927:CDS | 60.0% | |
| CATCCACGACCCGAATCGGA+TGG | + | chr4.3:11321154-11321173 | MS.gene030927:CDS | 60.0% | |
| CCGATATCCCCACCGGATAC+CGG | - | chr4.3:11321525-11321544 | None:intergenic | 60.0% | |
| CCGGTATCCGGTGGGGATAT+CGG | + | chr4.3:11321522-11321541 | MS.gene030927:CDS | 60.0% | |
| CGTCGGAGGAGTTAGCGAGA+TGG | - | chr4.3:11321323-11321342 | None:intergenic | 60.0% | |
| GGGTCGTGGATGCGGTGATT+GGG | - | chr4.3:11321146-11321165 | None:intergenic | 60.0% | |
| TCGATGCTCCGGTATCCGGT+GGG | + | chr4.3:11321514-11321533 | MS.gene030927:CDS | 60.0% | |
| !! | GATCCATCCGATTCGGGTCG+TGG | - | chr4.3:11321160-11321179 | None:intergenic | 60.0% |
| !! | TCCGATTCGGGTCGTGGATG+CGG | - | chr4.3:11321154-11321173 | None:intergenic | 60.0% |
| CGATGCTCCGGTATCCGGTG+GGG | + | chr4.3:11321515-11321534 | MS.gene030927:CDS | 65.0% | |
| CGGGTCGTGGATGCGGTGAT+TGG | - | chr4.3:11321147-11321166 | None:intergenic | 65.0% | |
| GAATGGTGCAGCGGGGACGA+AGG | + | chr4.3:11321782-11321801 | MS.gene030927:CDS | 65.0% | |
| ! | TGCAGCGGGGACGAAGGCAT+TGG | + | chr4.3:11321788-11321807 | MS.gene030927:CDS | 65.0% |
| ACCGGCGGAGATGACGCGTG+AGG | - | chr4.3:11321211-11321230 | None:intergenic | 70.0% | |
| GCCTCACGCGTCATCTCCGC+CGG | + | chr4.3:11321207-11321226 | MS.gene030927:CDS | 70.0% | |
| GTCGGAGGGGTGACCGAGCA+TGG | - | chr4.3:11321355-11321374 | None:intergenic | 70.0% | |
| !! | CGGAGTGATGGGCGGCGCAA+TGG | + | chr4.3:11321185-11321204 | MS.gene030927:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 11321123 | 11322046 | 11321123 | ID=MS.gene030927 |
| chr4.3 | mRNA | 11321123 | 11322046 | 11321123 | ID=MS.gene030927.t1;Parent=MS.gene030927 |
| chr4.3 | exon | 11321123 | 11322046 | 11321123 | ID=MS.gene030927.t1.exon1;Parent=MS.gene030927.t1 |
| chr4.3 | CDS | 11321123 | 11322046 | 11321123 | ID=cds.MS.gene030927.t1;Parent=MS.gene030927.t1 |
| Gene Sequence |
| Protein sequence |
