AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67218

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67218.t1 MTR_8g088900 94.788 307 16 0 1 307 1 307 0.0 594
MS.gene67218.t1 MTR_8g102470 50.667 300 142 3 7 305 5 299 4.55e-99 294
MS.gene67218.t1 MTR_8g102470 50.667 300 142 3 7 305 29 323 1.21e-98 293
MS.gene67218.t1 MTR_2g099910 32.677 254 168 2 10 262 42 293 4.59e-37 135
MS.gene67218.t1 MTR_2g099910 34.123 211 136 2 10 219 42 250 1.07e-31 119
MS.gene67218.t1 MTR_8g028120 28.163 245 172 3 15 258 2 243 2.55e-30 116
MS.gene67218.t1 MTR_2g099910 34.225 187 120 2 10 195 42 226 1.08e-25 102
MS.gene67218.t1 MTR_6g069685 25.000 304 217 5 9 306 318 616 1.90e-22 97.8
MS.gene67218.t1 MTR_6g069685 23.832 214 153 4 16 223 7 216 3.78e-11 64.3
MS.gene67218.t1 MTR_2g030400 26.246 301 195 9 9 288 35 329 1.20e-20 91.3
MS.gene67218.t1 MTR_2g030400 30.622 209 128 7 16 210 42 247 1.26e-20 89.7
MS.gene67218.t1 MTR_2g030400 30.622 209 128 7 16 210 42 247 1.40e-20 90.1
MS.gene67218.t1 MTR_2g030400 27.273 264 168 8 16 258 42 302 1.49e-20 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67218.t1 AT1G71180 54.902 306 127 2 1 306 22 316 1.46e-103 305
MS.gene67218.t1 AT1G71170 53.268 306 134 2 1 306 1 297 1.54e-102 302
MS.gene67218.t1 AT4G29120 48.658 298 147 3 9 305 33 325 1.39e-96 288
MS.gene67218.t1 AT1G17650 30.040 253 170 4 13 262 7 255 2.72e-30 116
MS.gene67218.t1 AT3G25530 27.431 288 203 3 15 301 2 284 5.71e-30 115
MS.gene67218.t1 AT1G17650 30.040 253 170 4 13 262 66 314 9.54e-30 116
MS.gene67218.t1 AT3G25530 29.612 206 142 2 15 219 2 205 3.60e-26 103
MS.gene67218.t1 AT3G25530 28.472 288 189 5 15 301 2 273 1.03e-25 103
MS.gene67218.t1 AT1G18270 25.676 296 211 5 15 306 323 613 6.73e-22 96.7
MS.gene67218.t1 AT1G18270 25.676 296 211 5 15 306 324 614 6.73e-22 96.7
MS.gene67218.t1 AT1G18270 25.676 296 211 5 15 306 323 613 7.13e-22 96.7
MS.gene67218.t1 AT1G18270 25.676 296 211 5 15 306 323 613 7.28e-22 96.7
MS.gene67218.t1 AT4G20930 28.899 218 138 7 16 219 40 254 1.04e-19 88.6
MS.gene67218.t1 AT4G20930 27.684 177 113 6 57 219 7 182 7.94e-14 70.9

Find 99 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGAAGAGAGAGGGAATT+TGG 0.129204 4.2:-12448865 None:intergenic
ACGAAGGCATTGGAGTTATT+TGG 0.151791 4.2:+12449396 MS.gene67218:CDS
AAAACCGTTGTTTGAAATAA+TGG 0.184681 4.2:+12449203 MS.gene67218:CDS
GGAAGGTGAATTTGCGAGTT+TGG 0.245854 4.2:-12448896 None:intergenic
GTGGATGCGGTGATTGGGTT+TGG 0.265810 4.2:-12448736 None:intergenic
GAGTATCAAGTTAAGGATTT+AGG 0.269336 4.2:+12449462 MS.gene67218:CDS
TGGGAAGAGGATGATAAATA+AGG 0.295134 4.2:+12449416 MS.gene67218:CDS
CGGGTCGTGGATGCGGTGAT+TGG 0.303864 4.2:-12448742 None:intergenic
TCTGTTATTGATAGGATTAA+TGG 0.305673 4.2:+12449615 MS.gene67218:CDS
TTTACTGGTATGGTTGCTAA+TGG 0.309860 4.2:+12449561 MS.gene67218:CDS
AAACCGTTGTTTGAAATAAT+GGG 0.320966 4.2:+12449204 MS.gene67218:CDS
CGAAGGCATTGGAGTTATTT+GGG 0.322668 4.2:+12449397 MS.gene67218:CDS
GTGTTATTTCTGTTATTGAT+AGG 0.359139 4.2:+12449607 MS.gene67218:CDS
ATTGAAGAGAGAGGGAATTT+GGG 0.361420 4.2:-12448864 None:intergenic
GAGAGGGAATTTGGGTGAGA+TGG 0.361588 4.2:-12448856 None:intergenic
TTACTGGTATGGTTGCTAAT+GGG 0.372029 4.2:+12449562 MS.gene67218:CDS
AGAGGGAATTTGGGTGAGAT+GGG 0.383239 4.2:-12448855 None:intergenic
CCGGTATCCGGTGGGGATAT+CGG 0.383577 4.2:+12449120 MS.gene67218:CDS
GAGATTTCTTTAGCGAGATC+TGG 0.387363 4.2:-12449057 None:intergenic
TGGATGCGGTGATTGGGTTT+GGG 0.390118 4.2:-12448735 None:intergenic
AGATGGGTTGCGAGCGTAGA+AGG 0.390367 4.2:-12448839 None:intergenic
GTGTCTACAGTGACAGTGTT+GGG 0.392820 4.2:-12449021 None:intergenic
CGATTCCGATCCATCCGATT+CGG 0.405924 4.2:-12448762 None:intergenic
CAAGTTAAGGATTTAGGAAT+GGG 0.417548 4.2:+12449468 MS.gene67218:CDS
ATGGATCGGAATCGGAGTTA+TGG 0.419769 4.2:+12448771 MS.gene67218:CDS
GCTAATGGGGATGGGAAGCT+TGG 0.420897 4.2:+12449576 MS.gene67218:CDS
TGGATCGGAATCGGAGTTAT+GGG 0.422813 4.2:+12448772 MS.gene67218:CDS
ACCGCATCCACGACCCGAAT+CGG 0.445574 4.2:+12448748 MS.gene67218:CDS
GATTCCGATCCATCCGATTC+GGG 0.447335 4.2:-12448761 None:intergenic
TCAATCGATGCTCCGGTATC+CGG 0.450145 4.2:+12449108 MS.gene67218:CDS
TCCGATTCGGGTCGTGGATG+CGG 0.460578 4.2:-12448749 None:intergenic
TTATGCTGAGTATCAAGTTA+AGG 0.464856 4.2:+12449455 MS.gene67218:CDS
CATTGGAGTTATTTGGGAAG+AGG 0.466061 4.2:+12449403 MS.gene67218:CDS
GATCCATCCGATTCGGGTCG+TGG 0.466090 4.2:-12448755 None:intergenic
GATGGGAAGCTTGGTGGTCA+AGG 0.474146 4.2:+12449585 MS.gene67218:CDS
GGGTCGTGGATGCGGTGATT+GGG 0.482315 4.2:-12448741 None:intergenic
GCAATTAAGAATGGTGCAGC+GGG 0.484227 4.2:+12449372 MS.gene67218:CDS
CCGATATCCCCACCGGATAC+CGG 0.488724 4.2:-12449120 None:intergenic
TCAAGTTAAGGATTTAGGAA+TGG 0.488927 4.2:+12449467 MS.gene67218:CDS
CGCTTGGTCAATCGATGCTC+CGG 0.491216 4.2:+12449101 MS.gene67218:CDS
GTCGGAGGAGTTAGCGAGAT+GGG 0.496377 4.2:-12448917 None:intergenic
GTAGAAGGTGAGAGTGTAAC+CGG 0.498278 4.2:-12448824 None:intergenic
TACTGGTATGGTTGCTAATG+GGG 0.513602 4.2:+12449563 MS.gene67218:CDS
TTCAACTACAGAGGCTTCAC+CGG 0.516853 4.2:-12449175 None:intergenic
TGCAGCGGGGACGAAGGCAT+TGG 0.519441 4.2:+12449386 MS.gene67218:CDS
TGCAATTAAGAATGGTGCAG+CGG 0.524648 4.2:+12449371 MS.gene67218:CDS
CGAATCGGATGGATCGGAAT+CGG 0.525123 4.2:+12448763 MS.gene67218:CDS
CGGAGTTATGGGCGGCGCAA+TGG 0.525795 4.2:+12448783 MS.gene67218:CDS
ATCGATGCTCCGGTATCCGG+TGG 0.526643 4.2:+12449111 MS.gene67218:CDS
AATGGGAAAAGCAACATACA+TGG 0.530781 4.2:+12449221 MS.gene67218:CDS
AATGGGGATGGGAAGCTTGG+TGG 0.531606 4.2:+12449579 MS.gene67218:CDS
GTCGGAGGGGTGACCGAGCA+TGG 0.541540 4.2:-12448950 None:intergenic
GTGAAGCCTCTGTAGTTGAA+TGG 0.543870 4.2:+12449178 MS.gene67218:CDS
TAGATTGATTTAACGTCGGA+GGG 0.549674 4.2:-12448964 None:intergenic
CGTCGGAGGAGTTAGCGAGA+TGG 0.558276 4.2:-12448918 None:intergenic
GCCTCACGCCTCATCTCCGC+CGG 0.562881 4.2:+12448805 MS.gene67218:CDS
GTATGGTTGCTAATGGGGAT+GGG 0.563707 4.2:+12449568 MS.gene67218:CDS
ATGGGAAAAGCAACATACAT+GGG 0.566603 4.2:+12449222 MS.gene67218:CDS
TCCCTCTCTCTTCAATACCT+CGG 0.574178 4.2:+12448871 MS.gene67218:CDS
GGTATGGTTGCTAATGGGGA+TGG 0.581616 4.2:+12449567 MS.gene67218:CDS
TCGATGCTCCGGTATCCGGT+GGG 0.582749 4.2:+12449112 MS.gene67218:CDS
TTTCCCATTATTTCAAACAA+CGG 0.582825 4.2:-12449207 None:intergenic
TAGTGTTTGCAAAACGAAGT+GGG 0.586049 4.2:+12449325 MS.gene67218:CDS
AGCGGATTTAACTCGTGCTA+CGG 0.586888 4.2:-12449082 None:intergenic
GAATGGTGCAGCGGGGACGA+AGG 0.592089 4.2:+12449380 MS.gene67218:CDS
GAGTGTAACCGGCGGAGATG+AGG 0.593429 4.2:-12448813 None:intergenic
CATCCACGACCCGAATCGGA+TGG 0.595417 4.2:+12448752 MS.gene67218:CDS
GTAGATTGATTTAACGTCGG+AGG 0.596473 4.2:-12448965 None:intergenic
AATTTGATCGGACTTAGTGA+AGG 0.602083 4.2:+12449300 MS.gene67218:CDS
ACTATCGGAGCGAATTTGAT+CGG 0.602735 4.2:+12449288 MS.gene67218:CDS
GGGGATATCGGAGCAAGAGA+CGG 0.602736 4.2:+12449132 MS.gene67218:CDS
GGTGTCTACAGTGACAGTGT+TGG 0.605447 4.2:-12449022 None:intergenic
GCCGAGGTATTGAAGAGAGA+GGG 0.606244 4.2:-12448872 None:intergenic
AAACTAGCAATCTTCGCCGC+CGG 0.607107 4.2:+12449156 MS.gene67218:CDS
ACGACCCGAATCGGATGGAT+CGG 0.611681 4.2:+12448757 MS.gene67218:CDS
GAGGAGTTAGCGAGATGGGA+AGG 0.613168 4.2:-12448913 None:intergenic
ATAGCGAATCAGATAACTAT+CGG 0.617551 4.2:+12449273 MS.gene67218:CDS
TGCTTAACCAAAGAAGCACC+AGG 0.620317 4.2:-12449534 None:intergenic
AATTTGCGAGTTTGGCGCCG+AGG 0.625882 4.2:-12448888 None:intergenic
CGCCGAGGTATTGAAGAGAG+AGG 0.626412 4.2:-12448873 None:intergenic
TGTCTACAGTGACAGTGTTG+GGG 0.629152 4.2:-12449020 None:intergenic
CGATGCTCCGGTATCCGGTG+GGG 0.630682 4.2:+12449113 MS.gene67218:CDS
AACTACAGAGGCTTCACCGG+CGG 0.632581 4.2:-12449172 None:intergenic
GGATTTAACTCGTGCTACGG+CGG 0.633686 4.2:-12449079 None:intergenic
TTAGTGTTTGCAAAACGAAG+TGG 0.638669 4.2:+12449324 MS.gene67218:CDS
TAGCACGAGTTAAATCCGCT+TGG 0.644480 4.2:+12449085 MS.gene67218:CDS
TGGGAAAAGCAACATACATG+GGG 0.646047 4.2:+12449223 MS.gene67218:CDS
CGGAGCATCGATTGACCAAG+CGG 0.652137 4.2:-12449100 None:intergenic
TCTTGCTCCGATATCCCCAC+CGG 0.654538 4.2:-12449127 None:intergenic
GAGGTAGATTGATTTAACGT+CGG 0.660666 4.2:-12448968 None:intergenic
ATCGGAATCGGAGTTATGGG+CGG 0.674975 4.2:+12448775 MS.gene67218:CDS
CATGGTGAAAACGACGTCGG+AGG 0.675042 4.2:-12448932 None:intergenic
AGATTGATTTAACGTCGGAG+GGG 0.675762 4.2:-12448963 None:intergenic
GAGATCTGGATGTGAGCTTG+TGG 0.680246 4.2:-12449043 None:intergenic
ACCGGCGGAGATGAGGCGTG+AGG 0.680613 4.2:-12448806 None:intergenic
CAATTAAGAATGGTGCAGCG+GGG 0.738040 4.2:+12449373 MS.gene67218:CDS
GAGCATGGTGAAAACGACGT+CGG 0.746260 4.2:-12448935 None:intergenic
GGGAAAAGCAACATACATGG+GGG 0.753851 4.2:+12449224 MS.gene67218:CDS
GAAGGTGAGAGTGTAACCGG+CGG 0.761972 4.2:-12448821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCTGTTATTGATAGGATTAA+TGG + chr4.2:12449615-12449634 MS.gene67218:CDS 25.0%
! TTTCCCATTATTTCAAACAA+CGG - chr4.2:12449210-12449229 None:intergenic 25.0%
!! AAAACCGTTGTTTGAAATAA+TGG + chr4.2:12449203-12449222 MS.gene67218:CDS 25.0%
!! AAACCGTTGTTTGAAATAAT+GGG + chr4.2:12449204-12449223 MS.gene67218:CDS 25.0%
!! GGATGATAAATAAGGATTTT+AGG + chr4.2:12449424-12449443 MS.gene67218:CDS 25.0%
!! TTTTTGGATGCAATTAAGAA+TGG + chr4.2:12449363-12449382 MS.gene67218:CDS 25.0%
!!! GTGTTATTTCTGTTATTGAT+AGG + chr4.2:12449607-12449626 MS.gene67218:CDS 25.0%
ATAGCGAATCAGATAACTAT+CGG + chr4.2:12449273-12449292 MS.gene67218:CDS 30.0%
CAAGTTAAGGATTTAGGAAT+GGG + chr4.2:12449468-12449487 MS.gene67218:CDS 30.0%
GAGTATCAAGTTAAGGATTT+AGG + chr4.2:12449462-12449481 MS.gene67218:CDS 30.0%
TCAAGTTAAGGATTTAGGAA+TGG + chr4.2:12449467-12449486 MS.gene67218:CDS 30.0%
TTATGCTGAGTATCAAGTTA+AGG + chr4.2:12449455-12449474 MS.gene67218:CDS 30.0%
! ATAAATAAGGATTTTAGGCC+TGG + chr4.2:12449429-12449448 MS.gene67218:CDS 30.0%
! ATGGGTGTTAATTTTGTTGA+AGG + chr4.2:12449486-12449505 MS.gene67218:CDS 30.0%
! TAAATAAGGATTTTAGGCCT+GGG + chr4.2:12449430-12449449 MS.gene67218:CDS 30.0%
! TAAGCAGATTTTTACTGGTA+TGG + chr4.2:12449551-12449570 MS.gene67218:CDS 30.0%
! TTGGTTAAGCAGATTTTTAC+TGG + chr4.2:12449546-12449565 MS.gene67218:CDS 30.0%
AATGGGAAAAGCAACATACA+TGG + chr4.2:12449221-12449240 MS.gene67218:CDS 35.0%
AATTTGATCGGACTTAGTGA+AGG + chr4.2:12449300-12449319 MS.gene67218:CDS 35.0%
ATGGGAAAAGCAACATACAT+GGG + chr4.2:12449222-12449241 MS.gene67218:CDS 35.0%
ATTGAAGAGAGAGGGAATTT+GGG - chr4.2:12448867-12448886 None:intergenic 35.0%
TAGTGTTTGCAAAACGAAGT+GGG + chr4.2:12449325-12449344 MS.gene67218:CDS 35.0%
TATTGAAGAGAGAGGGAATT+TGG - chr4.2:12448868-12448887 None:intergenic 35.0%
TCAATCTACCTCGACAAAAA+CGG + chr4.2:12448979-12448998 MS.gene67218:CDS 35.0%
TGGGAAGAGGATGATAAATA+AGG + chr4.2:12449416-12449435 MS.gene67218:CDS 35.0%
TTACTGGTATGGTTGCTAAT+GGG + chr4.2:12449562-12449581 MS.gene67218:CDS 35.0%
TTAGTGTTTGCAAAACGAAG+TGG + chr4.2:12449324-12449343 MS.gene67218:CDS 35.0%
TTTACTGGTATGGTTGCTAA+TGG + chr4.2:12449561-12449580 MS.gene67218:CDS 35.0%
! AAATAAGGATTTTAGGCCTG+GGG + chr4.2:12449431-12449450 MS.gene67218:CDS 35.0%
! GAGGTAGATTGATTTAACGT+CGG - chr4.2:12448971-12448990 None:intergenic 35.0%
! TAGATTGATTTAACGTCGGA+GGG - chr4.2:12448967-12448986 None:intergenic 35.0%
! TTTTAGCCATTCAACTACAG+AGG - chr4.2:12449187-12449206 None:intergenic 35.0%
!! GCTTGACTTGAAGCAATTTT+TGG + chr4.2:12449347-12449366 MS.gene67218:CDS 35.0%
ACTATCGGAGCGAATTTGAT+CGG + chr4.2:12449288-12449307 MS.gene67218:CDS 40.0%
CATTGGAGTTATTTGGGAAG+AGG + chr4.2:12449403-12449422 MS.gene67218:CDS 40.0%
GAGATTTCTTTAGCGAGATC+TGG - chr4.2:12449060-12449079 None:intergenic 40.0%
TACTGGTATGGTTGCTAATG+GGG + chr4.2:12449563-12449582 MS.gene67218:CDS 40.0%
TGCAATTAAGAATGGTGCAG+CGG + chr4.2:12449371-12449390 MS.gene67218:CDS 40.0%
TGGGAAAAGCAACATACATG+GGG + chr4.2:12449223-12449242 MS.gene67218:CDS 40.0%
! AATAAGGATTTTAGGCCTGG+GGG + chr4.2:12449432-12449451 MS.gene67218:CDS 40.0%
! AGATTGATTTAACGTCGGAG+GGG - chr4.2:12448966-12448985 None:intergenic 40.0%
! GTAGATTGATTTAACGTCGG+AGG - chr4.2:12448968-12448987 None:intergenic 40.0%
!! ACGAAGGCATTGGAGTTATT+TGG + chr4.2:12449396-12449415 MS.gene67218:CDS 40.0%
!! CGAAGGCATTGGAGTTATTT+GGG + chr4.2:12449397-12449416 MS.gene67218:CDS 40.0%
!!! AAACAATGCCGTTTTTGTCG+AGG - chr4.2:12448990-12449009 None:intergenic 40.0%
!!! GATGAAGTTGTTGTTTTGCC+TGG + chr4.2:12449516-12449535 MS.gene67218:CDS 40.0%
AGAGGGAATTTGGGTGAGAT+GGG - chr4.2:12448858-12448877 None:intergenic 45.0%
ATGGATCGGAATCGGAGTTA+TGG + chr4.2:12448771-12448790 MS.gene67218:CDS 45.0%
CAATTAAGAATGGTGCAGCG+GGG + chr4.2:12449373-12449392 MS.gene67218:CDS 45.0%
GCAATTAAGAATGGTGCAGC+GGG + chr4.2:12449372-12449391 MS.gene67218:CDS 45.0%
GGAAGGTGAATTTGCGAGTT+TGG - chr4.2:12448899-12448918 None:intergenic 45.0%
GGGAAAAGCAACATACATGG+GGG + chr4.2:12449224-12449243 MS.gene67218:CDS 45.0%
GTATGGTTGCTAATGGGGAT+GGG + chr4.2:12449568-12449587 MS.gene67218:CDS 45.0%
GTGAAGCCTCTGTAGTTGAA+TGG + chr4.2:12449178-12449197 MS.gene67218:CDS 45.0%
GTGTCTACAGTGACAGTGTT+GGG - chr4.2:12449024-12449043 None:intergenic 45.0%
TAGCACGAGTTAAATCCGCT+TGG + chr4.2:12449085-12449104 MS.gene67218:CDS 45.0%
TCCCTCTCTCTTCAATACCT+CGG + chr4.2:12448871-12448890 MS.gene67218:CDS 45.0%
TGGATCGGAATCGGAGTTAT+GGG + chr4.2:12448772-12448791 MS.gene67218:CDS 45.0%
TGTCTACAGTGACAGTGTTG+GGG - chr4.2:12449023-12449042 None:intergenic 45.0%
TTCAACTACAGAGGCTTCAC+CGG - chr4.2:12449178-12449197 None:intergenic 45.0%
! AGCGGATTTAACTCGTGCTA+CGG - chr4.2:12449085-12449104 None:intergenic 45.0%
! GTAGAAGGTGAGAGTGTAAC+CGG - chr4.2:12448827-12448846 None:intergenic 45.0%
! TGTTTTGCCTGGTGCTTCTT+TGG + chr4.2:12449527-12449546 MS.gene67218:CDS 45.0%
!! TGCTTAACCAAAGAAGCACC+AGG - chr4.2:12449537-12449556 None:intergenic 45.0%
AAACTAGCAATCTTCGCCGC+CGG + chr4.2:12449156-12449175 MS.gene67218:CDS 50.0%
ATCGGAATCGGAGTTATGGG+CGG + chr4.2:12448775-12448794 MS.gene67218:CDS 50.0%
CGAATCGGATGGATCGGAAT+CGG + chr4.2:12448763-12448782 MS.gene67218:CDS 50.0%
CGATTCCGATCCATCCGATT+CGG - chr4.2:12448765-12448784 None:intergenic 50.0%
GAGAGGGAATTTGGGTGAGA+TGG - chr4.2:12448859-12448878 None:intergenic 50.0%
GAGATCTGGATGTGAGCTTG+TGG - chr4.2:12449046-12449065 None:intergenic 50.0%
GAGCATGGTGAAAACGACGT+CGG - chr4.2:12448938-12448957 None:intergenic 50.0%
GATTCCGATCCATCCGATTC+GGG - chr4.2:12448764-12448783 None:intergenic 50.0%
GGATTTAACTCGTGCTACGG+CGG - chr4.2:12449082-12449101 None:intergenic 50.0%
GGTATGGTTGCTAATGGGGA+TGG + chr4.2:12449567-12449586 MS.gene67218:CDS 50.0%
GGTGTCTACAGTGACAGTGT+TGG - chr4.2:12449025-12449044 None:intergenic 50.0%
TCAATCGATGCTCCGGTATC+CGG + chr4.2:12449108-12449127 MS.gene67218:CDS 50.0%
TGATACTCAGCATAACCCCC+AGG - chr4.2:12449450-12449469 None:intergenic 50.0%
TGGATGCGGTGATTGGGTTT+GGG - chr4.2:12448738-12448757 None:intergenic 50.0%
!! GACGTCGTTTTCACCATGCT+CGG + chr4.2:12448937-12448956 MS.gene67218:CDS 50.0%
!! GCCGAGGTATTGAAGAGAGA+GGG - chr4.2:12448875-12448894 None:intergenic 50.0%
AACTACAGAGGCTTCACCGG+CGG - chr4.2:12449175-12449194 None:intergenic 55.0%
AATGGGGATGGGAAGCTTGG+TGG + chr4.2:12449579-12449598 MS.gene67218:CDS 55.0%
AATTTGCGAGTTTGGCGCCG+AGG - chr4.2:12448891-12448910 None:intergenic 55.0%
ACGACCCGAATCGGATGGAT+CGG + chr4.2:12448757-12448776 MS.gene67218:CDS 55.0%
CATGGTGAAAACGACGTCGG+AGG - chr4.2:12448935-12448954 None:intergenic 55.0%
CGCTTGGTCAATCGATGCTC+CGG + chr4.2:12449101-12449120 MS.gene67218:CDS 55.0%
GAGGAGTTAGCGAGATGGGA+AGG - chr4.2:12448916-12448935 None:intergenic 55.0%
GCAACATACATGGGGGCTAG+TGG + chr4.2:12449231-12449250 MS.gene67218:CDS 55.0%
GCTAATGGGGATGGGAAGCT+TGG + chr4.2:12449576-12449595 MS.gene67218:CDS 55.0%
GGGGATATCGGAGCAAGAGA+CGG + chr4.2:12449132-12449151 MS.gene67218:CDS 55.0%
GTCGGAGGAGTTAGCGAGAT+GGG - chr4.2:12448920-12448939 None:intergenic 55.0%
GTGGATGCGGTGATTGGGTT+TGG - chr4.2:12448739-12448758 None:intergenic 55.0%
TCTTGCTCCGATATCCCCAC+CGG - chr4.2:12449130-12449149 None:intergenic 55.0%
! GAAGGTGAGAGTGTAACCGG+CGG - chr4.2:12448824-12448843 None:intergenic 55.0%
! GATGGGAAGCTTGGTGGTCA+AGG + chr4.2:12449585-12449604 MS.gene67218:CDS 55.0%
! TACATGGGGGCTAGTGGATG+TGG + chr4.2:12449237-12449256 MS.gene67218:CDS 55.0%
!! AGATGGGTTGCGAGCGTAGA+AGG - chr4.2:12448842-12448861 None:intergenic 55.0%
!! CGCCGAGGTATTGAAGAGAG+AGG - chr4.2:12448876-12448895 None:intergenic 55.0%
!! CGGAGCATCGATTGACCAAG+CGG - chr4.2:12449103-12449122 None:intergenic 55.0%
ACCGCATCCACGACCCGAAT+CGG + chr4.2:12448748-12448767 MS.gene67218:CDS 60.0%
ATCGATGCTCCGGTATCCGG+TGG + chr4.2:12449111-12449130 MS.gene67218:CDS 60.0%
CATCCACGACCCGAATCGGA+TGG + chr4.2:12448752-12448771 MS.gene67218:CDS 60.0%
CCGATATCCCCACCGGATAC+CGG - chr4.2:12449123-12449142 None:intergenic 60.0%
CCGGTATCCGGTGGGGATAT+CGG + chr4.2:12449120-12449139 MS.gene67218:CDS 60.0%
CGTCGGAGGAGTTAGCGAGA+TGG - chr4.2:12448921-12448940 None:intergenic 60.0%
GAGTGTAACCGGCGGAGATG+AGG - chr4.2:12448816-12448835 None:intergenic 60.0%
GGGTCGTGGATGCGGTGATT+GGG - chr4.2:12448744-12448763 None:intergenic 60.0%
TCGATGCTCCGGTATCCGGT+GGG + chr4.2:12449112-12449131 MS.gene67218:CDS 60.0%
!! GATCCATCCGATTCGGGTCG+TGG - chr4.2:12448758-12448777 None:intergenic 60.0%
!! TCCGATTCGGGTCGTGGATG+CGG - chr4.2:12448752-12448771 None:intergenic 60.0%
CGATGCTCCGGTATCCGGTG+GGG + chr4.2:12449113-12449132 MS.gene67218:CDS 65.0%
CGGAGTTATGGGCGGCGCAA+TGG + chr4.2:12448783-12448802 MS.gene67218:CDS 65.0%
CGGGTCGTGGATGCGGTGAT+TGG - chr4.2:12448745-12448764 None:intergenic 65.0%
GAATGGTGCAGCGGGGACGA+AGG + chr4.2:12449380-12449399 MS.gene67218:CDS 65.0%
! TGCAGCGGGGACGAAGGCAT+TGG + chr4.2:12449386-12449405 MS.gene67218:CDS 65.0%
ACCGGCGGAGATGAGGCGTG+AGG - chr4.2:12448809-12448828 None:intergenic 70.0%
GCCTCACGCCTCATCTCCGC+CGG + chr4.2:12448805-12448824 MS.gene67218:CDS 70.0%
GTCGGAGGGGTGACCGAGCA+TGG - chr4.2:12448953-12448972 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 12448721 12449644 12448721 ID=MS.gene67218
chr4.2 mRNA 12448721 12449644 12448721 ID=MS.gene67218.t1;Parent=MS.gene67218
chr4.2 exon 12448721 12449644 12448721 ID=MS.gene67218.t1.exon1;Parent=MS.gene67218.t1
chr4.2 CDS 12448721 12449644 12448721 ID=cds.MS.gene67218.t1;Parent=MS.gene67218.t1
Gene Sequence

>MS.gene67218

ATGGAAAGCAAATACCCAAACCCAATCACCGCATCCACGACCCGAATCGGATGGATCGGAATCGGAGTTATGGGCGGCGCAATGGCCTCACGCCTCATCTCCGCCGGTTACACTCTCACCTTCTACGCTCGCAACCCATCTCACCCAAATTCCCTCTCTCTTCAATACCTCGGCGCCAAACTCGCAAATTCACCTTCCCATCTCGCTAACTCCTCCGACGTCGTTTTCACCATGCTCGGTCACCCCTCCGACGTTAAATCAATCTACCTCGACAAAAACGGCATTGTTTCATCTCTAGACCCCAACACTGTCACTGTAGACACCACAAGCTCACATCCAGATCTCGCTAAAGAAATCTCCGCCGTAGCACGAGTTAAATCCGCTTGGTCAATCGATGCTCCGGTATCCGGTGGGGATATCGGAGCAAGAGACGGAAAACTAGCAATCTTCGCCGCCGGTGAAGCCTCTGTAGTTGAATGGCTAAAACCGTTGTTTGAAATAATGGGAAAAGCAACATACATGGGGGCTAGTGGATGTGGACAGAGTTGCAAGATAGCGAATCAGATAACTATCGGAGCGAATTTGATCGGACTTAGTGAAGGATTAGTGTTTGCAAAACGAAGTGGGCTTGACTTGAAGCAATTTTTGGATGCAATTAAGAATGGTGCAGCGGGGACGAAGGCATTGGAGTTATTTGGGAAGAGGATGATAAATAAGGATTTTAGGCCTGGGGGTTATGCTGAGTATCAAGTTAAGGATTTAGGAATGGGTGTTAATTTTGTTGAAGGTGATGATGATGAAGTTGTTGTTTTGCCTGGTGCTTCTTTGGTTAAGCAGATTTTTACTGGTATGGTTGCTAATGGGGATGGGAAGCTTGGTGGTCAAGGTGTTATTTCTGTTATTGATAGGATTAATGGAAGTTAA
Protein sequence

>MS.gene67218.t1

MESKYPNPITASTTRIGWIGIGVMGGAMASRLISAGYTLTFYARNPSHPNSLSLQYLGAKLANSPSHLANSSDVVFTMLGHPSDVKSIYLDKNGIVSSLDPNTVTVDTTSSHPDLAKEISAVARVKSAWSIDAPVSGGDIGARDGKLAIFAAGEASVVEWLKPLFEIMGKATYMGASGCGQSCKIANQITIGANLIGLSEGLVFAKRSGLDLKQFLDAIKNGAAGTKALELFGKRMINKDFRPGGYAEYQVKDLGMGVNFVEGDDDEVVVLPGASLVKQIFTGMVANGDGKLGGQGVISVIDRINGS