Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59608.t1 | XP_013444705.1 | 99.3 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 1.10E-152 | 549.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59608.t1 | Q9LSV0 | 81.8 | 285 | 51 | 1 | 1 | 284 | 1 | 285 | 3.1e-129 | 462.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59608.t1 | I3SHU4 | 99.3 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 7.7e-153 | 549.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene59608 | 0.816149 | 6.42E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene59608 | 0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene049195 | MS.gene59608 | 0.804799 | 1.82E-49 | -1.69E-46 |
| MS.gene049260 | MS.gene59608 | 0.814631 | 1.40E-51 | -1.69E-46 |
| MS.gene049297 | MS.gene59608 | 0.807704 | 4.44E-50 | -1.69E-46 |
| MS.gene04933 | MS.gene59608 | 0.811621 | 6.39E-51 | -1.69E-46 |
| MS.gene049346 | MS.gene59608 | 0.807771 | 4.30E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene59608 | 0.821333 | 4.27E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene59608 | 0.828377 | 9.30E-55 | -1.69E-46 |
| MS.gene049910 | MS.gene59608 | 0.818388 | 2.01E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene59608 | 0.86137 | 1.08E-63 | -1.69E-46 |
| MS.gene050319 | MS.gene59608 | -0.802454 | 5.57E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene59608 | 0.818376 | 2.02E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene59608 | 0.80078 | 1.23E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene59608 | 0.800871 | 1.18E-48 | -1.69E-46 |
| MS.gene05101 | MS.gene59608 | 0.814831 | 1.26E-51 | -1.69E-46 |
| MS.gene05119 | MS.gene59608 | -0.821439 | 4.03E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene59608 | 0.810058 | 1.39E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene59608 | 0.826664 | 2.40E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene59608 | 0.820452 | 6.81E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene59608 | 0.830468 | 2.89E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene59608 | 0.821266 | 4.42E-53 | -1.69E-46 |
| MS.gene052178 | MS.gene59608 | 0.803223 | 3.86E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene59608 | 0.854423 | 1.24E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene59608 | 0.855015 | 8.37E-62 | -1.69E-46 |
| MS.gene052310 | MS.gene59608 | 0.806869 | 6.67E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene59608 | 0.854552 | 1.14E-61 | -1.69E-46 |
| MS.gene053073 | MS.gene59608 | 0.8013 | 9.61E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene59608 | 0.822939 | 1.81E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene59608 | 0.878018 | 3.94E-69 | -1.69E-46 |
| MS.gene054011 | MS.gene59608 | 0.801235 | 9.91E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene59608 | 0.815589 | 8.56E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene59608 | 0.826795 | 2.23E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene59608 | 0.81608 | 6.65E-52 | -1.69E-46 |
| MS.gene054473 | MS.gene59608 | 0.842826 | 2.04E-58 | -1.69E-46 |
| MS.gene054917 | MS.gene59608 | 0.812017 | 5.24E-51 | -1.69E-46 |
| MS.gene054918 | MS.gene59608 | 0.842577 | 2.38E-58 | -1.69E-46 |
| MS.gene054930 | MS.gene59608 | 0.87549 | 2.96E-68 | -1.69E-46 |
| MS.gene054983 | MS.gene59608 | 0.815617 | 8.43E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene59608 | 0.854869 | 9.23E-62 | -1.69E-46 |
| MS.gene055277 | MS.gene59608 | 0.80271 | 4.93E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene59608 | 0.859413 | 4.21E-63 | -1.69E-46 |
| MS.gene055428 | MS.gene59608 | 0.856968 | 2.25E-62 | -1.69E-46 |
| MS.gene05553 | MS.gene59608 | 0.819843 | 9.39E-53 | -1.69E-46 |
| MS.gene055604 | MS.gene59608 | 0.830761 | 2.45E-55 | -1.69E-46 |
| MS.gene055712 | MS.gene59608 | 0.807053 | 6.10E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene59608 | 0.810793 | 9.66E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene59608 | 0.847424 | 1.17E-59 | -1.69E-46 |
| MS.gene056979 | MS.gene59608 | 0.824474 | 7.91E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene59608 | 0.881048 | 3.32E-70 | -1.69E-46 |
| MS.gene057121 | MS.gene59608 | 0.822535 | 2.25E-53 | -1.69E-46 |
| MS.gene057207 | MS.gene59608 | 0.82643 | 2.73E-54 | -1.69E-46 |
| MS.gene057245 | MS.gene59608 | 0.833463 | 5.26E-56 | -1.69E-46 |
| MS.gene057439 | MS.gene59608 | 0.822122 | 2.80E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene59608 | 0.807201 | 5.67E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene59608 | 0.844397 | 7.76E-59 | -1.69E-46 |
| MS.gene057823 | MS.gene59608 | 0.832549 | 8.87E-56 | -1.69E-46 |
| MS.gene057825 | MS.gene59608 | 0.847281 | 1.28E-59 | -1.69E-46 |
| MS.gene058002 | MS.gene59608 | 0.852201 | 5.39E-61 | -1.69E-46 |
| MS.gene058082 | MS.gene59608 | 0.803559 | 3.29E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene59608 | 0.806683 | 7.30E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene59608 | 0.873852 | 1.07E-67 | -1.69E-46 |
| MS.gene058276 | MS.gene59608 | 0.805979 | 1.03E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene59608 | 0.804976 | 1.67E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene59608 | 0.865388 | 6.12E-65 | -1.69E-46 |
| MS.gene058749 | MS.gene59608 | 0.839812 | 1.27E-57 | -1.69E-46 |
| MS.gene05886 | MS.gene59608 | 0.901203 | 3.40E-78 | -1.69E-46 |
| MS.gene058928 | MS.gene59608 | 0.810349 | 1.21E-50 | -1.69E-46 |
| MS.gene058949 | MS.gene59608 | 0.809686 | 1.67E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene59608 | 0.821018 | 5.05E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene59608 | 0.889858 | 1.66E-73 | -1.69E-46 |
| MS.gene059420 | MS.gene59608 | 0.810858 | 9.35E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene59608 | 0.861524 | 9.66E-64 | -1.69E-46 |
| MS.gene059688 | MS.gene59608 | 0.834648 | 2.65E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene59608 | 0.840927 | 6.48E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene59608 | 0.838154 | 3.40E-57 | -1.69E-46 |
| MS.gene05984 | MS.gene59608 | 0.844578 | 6.93E-59 | -1.69E-46 |
| MS.gene059894 | MS.gene59608 | 0.843767 | 1.14E-58 | -1.69E-46 |
| MS.gene059899 | MS.gene59608 | 0.805423 | 1.34E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene59608 | 0.8196 | 1.07E-52 | -1.69E-46 |
| MS.gene060407 | MS.gene59608 | 0.818101 | 2.34E-52 | -1.69E-46 |
| MS.gene060495 | MS.gene59608 | 0.812949 | 3.28E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene59608 | 0.887579 | 1.26E-72 | -1.69E-46 |
| MS.gene061114 | MS.gene59608 | -0.81811 | 2.33E-52 | -1.69E-46 |
| MS.gene061159 | MS.gene59608 | 0.834683 | 2.60E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02110 | MS.gene59608 | PPI |
| MS.gene003315 | MS.gene59608 | PPI |
| MS.gene59608 | MS.gene051949 | PPI |
| MS.gene05985 | MS.gene59608 | PPI |
| MS.gene049066 | MS.gene59608 | PPI |
| MS.gene03058 | MS.gene59608 | PPI |
| MS.gene47905 | MS.gene59608 | PPI |
| MS.gene015821 | MS.gene59608 | PPI |
| MS.gene85223 | MS.gene59608 | PPI |
| MS.gene74531 | MS.gene59608 | PPI |
| MS.gene057011 | MS.gene59608 | PPI |
| MS.gene76149 | MS.gene59608 | PPI |
| MS.gene030927 | MS.gene59608 | PPI |
| MS.gene67218 | MS.gene59608 | PPI |
| MS.gene59608 | MS.gene27946 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59608.t1 | MTR_8g028120 | 99.296 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 0.0 | 570 |
| MS.gene59608.t1 | MTR_2g099910 | 56.690 | 284 | 122 | 1 | 2 | 284 | 47 | 330 | 1.77e-111 | 325 |
| MS.gene59608.t1 | MTR_2g099910 | 56.863 | 204 | 87 | 1 | 2 | 204 | 47 | 250 | 2.96e-76 | 233 |
| MS.gene59608.t1 | MTR_2g099910 | 57.062 | 177 | 75 | 1 | 2 | 177 | 47 | 223 | 8.31e-65 | 203 |
| MS.gene59608.t1 | MTR_8g102470 | 30.357 | 280 | 192 | 3 | 2 | 279 | 13 | 291 | 4.50e-41 | 144 |
| MS.gene59608.t1 | MTR_8g102470 | 30.357 | 280 | 192 | 3 | 2 | 279 | 37 | 315 | 7.58e-41 | 144 |
| MS.gene59608.t1 | MTR_8g088900 | 29.391 | 279 | 190 | 4 | 2 | 274 | 15 | 292 | 1.32e-33 | 126 |
| MS.gene59608.t1 | MTR_2g030400 | 28.283 | 297 | 193 | 4 | 2 | 278 | 41 | 337 | 3.16e-26 | 105 |
| MS.gene59608.t1 | MTR_2g030400 | 31.818 | 220 | 137 | 3 | 2 | 208 | 41 | 260 | 6.06e-26 | 103 |
| MS.gene59608.t1 | MTR_2g030400 | 31.818 | 220 | 137 | 3 | 2 | 208 | 41 | 260 | 8.84e-26 | 103 |
| MS.gene59608.t1 | MTR_2g030400 | 31.818 | 220 | 137 | 3 | 2 | 208 | 41 | 260 | 1.22e-25 | 103 |
| MS.gene59608.t1 | MTR_6g069685 | 26.962 | 293 | 199 | 6 | 2 | 283 | 326 | 614 | 3.48e-20 | 90.9 |
| MS.gene59608.t1 | MTR_6g069685 | 25.461 | 271 | 181 | 5 | 3 | 261 | 7 | 268 | 1.22e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59608.t1 | AT3G25530 | 81.754 | 285 | 51 | 1 | 1 | 284 | 1 | 285 | 1.36e-172 | 478 |
| MS.gene59608.t1 | AT3G25530 | 78.169 | 284 | 52 | 1 | 1 | 284 | 1 | 274 | 8.64e-164 | 456 |
| MS.gene59608.t1 | AT3G25530 | 80.976 | 205 | 38 | 1 | 1 | 204 | 1 | 205 | 6.26e-122 | 347 |
| MS.gene59608.t1 | AT1G17650 | 57.895 | 285 | 119 | 1 | 1 | 284 | 8 | 292 | 1.98e-113 | 329 |
| MS.gene59608.t1 | AT1G17650 | 57.895 | 285 | 119 | 1 | 1 | 284 | 67 | 351 | 7.05e-113 | 330 |
| MS.gene59608.t1 | AT4G29120 | 31.071 | 280 | 190 | 3 | 2 | 279 | 39 | 317 | 1.49e-38 | 138 |
| MS.gene59608.t1 | AT4G20930 | 32.550 | 298 | 179 | 6 | 3 | 279 | 40 | 336 | 1.99e-31 | 120 |
| MS.gene59608.t1 | AT1G18270 | 29.392 | 296 | 188 | 8 | 2 | 283 | 323 | 611 | 6.69e-25 | 104 |
| MS.gene59608.t1 | AT1G18270 | 24.364 | 275 | 203 | 4 | 3 | 273 | 5 | 278 | 7.58e-16 | 78.2 |
| MS.gene59608.t1 | AT1G18270 | 29.392 | 296 | 188 | 8 | 2 | 283 | 324 | 612 | 6.69e-25 | 104 |
| MS.gene59608.t1 | AT1G18270 | 24.275 | 276 | 203 | 5 | 3 | 273 | 5 | 279 | 2.68e-14 | 73.6 |
| MS.gene59608.t1 | AT1G18270 | 29.392 | 296 | 188 | 8 | 2 | 283 | 323 | 611 | 7.03e-25 | 104 |
| MS.gene59608.t1 | AT1G18270 | 24.364 | 275 | 203 | 4 | 3 | 273 | 5 | 278 | 7.60e-16 | 78.2 |
| MS.gene59608.t1 | AT1G18270 | 29.392 | 296 | 188 | 8 | 2 | 283 | 323 | 611 | 8.82e-25 | 104 |
| MS.gene59608.t1 | AT1G18270 | 24.364 | 275 | 203 | 4 | 3 | 273 | 5 | 278 | 7.74e-16 | 78.2 |
| MS.gene59608.t1 | AT4G20930 | 30.916 | 262 | 159 | 6 | 39 | 279 | 4 | 264 | 1.88e-22 | 94.4 |
| MS.gene59608.t1 | AT1G71170 | 26.103 | 272 | 195 | 3 | 14 | 284 | 27 | 293 | 6.36e-19 | 85.1 |
| MS.gene59608.t1 | AT1G71180 | 25.862 | 232 | 170 | 2 | 9 | 239 | 43 | 273 | 4.39e-16 | 77.4 |
Find 67 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAAAGAAATCTTTCTTTC+TGG | 0.164012 | 8.1:-73656281 | MS.gene59608:CDS |
| TTTAAACATGCCGTTACTTA+TGG | 0.260989 | 8.1:+73655522 | None:intergenic |
| TTTCTTGAAGCTCCTGTTTC+GGG | 0.271355 | 8.1:-73657622 | MS.gene59608:CDS |
| GTCTCCCAACCCCATGCTTC+TGG | 0.280528 | 8.1:+73655058 | None:intergenic |
| GGTGTTCTTGAGCAAATTAA+TGG | 0.309456 | 8.1:-73658228 | MS.gene59608:CDS |
| CTTTCTTGAAGCTCCTGTTT+CGG | 0.310097 | 8.1:-73657623 | MS.gene59608:CDS |
| GGAAAGAAATCTTTCTTTCT+GGG | 0.319830 | 8.1:-73656280 | MS.gene59608:CDS |
| ATCTGATCCTGCAGCTGCTT+TGG | 0.357743 | 8.1:-73658354 | MS.gene59608:CDS |
| TTGGAACAGAACCCTCTCTA+AGG | 0.382938 | 8.1:-73658645 | MS.gene59608:intron |
| TTTCTGGGTGAGGTTGGAAA+TGG | 0.402461 | 8.1:-73656265 | MS.gene59608:CDS |
| CTTGTTGTCAACATGGTAAT+GGG | 0.402762 | 8.1:-73656229 | MS.gene59608:CDS |
| CTTGAGCAAATTAATGGAAA+AGG | 0.410887 | 8.1:-73658222 | MS.gene59608:CDS |
| CCTTCTACGACATGGCTTCA+AGG | 0.424952 | 8.1:-73658675 | MS.gene59608:CDS |
| ATGGCTTCAAGGTCACTGTT+TGG | 0.430943 | 8.1:-73658664 | MS.gene59608:CDS |
| GCTGCAGCTGCGACAGGCAT+TGG | 0.436252 | 8.1:+73655391 | None:intergenic |
| ATGAGACTGGCTCTGGCCCT+TGG | 0.440934 | 8.1:-73655430 | MS.gene59608:CDS |
| TCATTTGCTGCAGCTGCGAC+AGG | 0.445970 | 8.1:+73655385 | None:intergenic |
| CATTTCTTGACAACAGCTGC+AGG | 0.447963 | 8.1:+73658398 | None:intergenic |
| GAAATCTTTCTTTCTGGGTG+AGG | 0.451195 | 8.1:-73656275 | MS.gene59608:CDS |
| TCTTTCTTTCTGGGTGAGGT+TGG | 0.457974 | 8.1:-73656271 | MS.gene59608:CDS |
| GGCTTCTTACTACCCGAAAC+AGG | 0.467901 | 8.1:+73657610 | None:intergenic |
| AACGGCATGTTTAAATTGAA+AGG | 0.477158 | 8.1:-73655514 | MS.gene59608:CDS |
| CCTTGAAGCCATGTCGTAGA+AGG | 0.480862 | 8.1:+73658675 | None:intergenic |
| AAAGCCAGAAGCATGGGGTT+GGG | 0.482519 | 8.1:-73655062 | MS.gene59608:CDS |
| ACTAGTTGGCCATCTTCTGC+AGG | 0.484133 | 8.1:+73657589 | None:intergenic |
| TTCAAGAAAGCCAGAAGCAT+GGG | 0.486636 | 8.1:-73655068 | MS.gene59608:CDS |
| TGATGTTTCAGTGGAAAAGC+AGG | 0.487430 | 8.1:+73655463 | None:intergenic |
| TGATCCTGCAGCTGCTTTGG+CGG | 0.494937 | 8.1:-73658351 | MS.gene59608:intron |
| GAAAGCCAGAAGCATGGGGT+TGG | 0.500182 | 8.1:-73655063 | MS.gene59608:CDS |
| ACTTGTTGTCAACATGGTAA+TGG | 0.503001 | 8.1:-73656230 | MS.gene59608:CDS |
| TAGGTGGTGTTTGATAAGGA+TGG | 0.509964 | 8.1:-73658249 | MS.gene59608:CDS |
| AGTAAGAAGCCTGCAGAAGA+TGG | 0.513694 | 8.1:-73657598 | MS.gene59608:CDS |
| GAAGGACATGAGACTGGCTC+TGG | 0.513772 | 8.1:-73655437 | MS.gene59608:CDS |
| TTTCCGAGTACATCAAATGC+TGG | 0.514724 | 8.1:+73656298 | None:intergenic |
| TGAAATGAATAACCTTAGAG+AGG | 0.515209 | 8.1:+73658633 | None:intergenic |
| CTTCCAGCATTTGATGTACT+CGG | 0.515625 | 8.1:-73656301 | MS.gene59608:CDS |
| TAGCACACTTCTTGATGTGC+TGG | 0.519966 | 8.1:-73655632 | MS.gene59608:intron |
| CTACAGGCAATCAAAGCAAA+AGG | 0.523095 | 8.1:-73657652 | MS.gene59608:intron |
| TGTCGCAGCTGCAGCAAATG+AGG | 0.525255 | 8.1:-73655383 | MS.gene59608:intron |
| CGGCAGCAAGTATAACTAGT+TGG | 0.527224 | 8.1:+73657575 | None:intergenic |
| CTGACCGCCAAAGCAGCTGC+AGG | 0.542754 | 8.1:+73658347 | None:intergenic |
| ATGATGAATGCTTTCTCTGA+GGG | 0.550025 | 8.1:-73655688 | MS.gene59608:CDS |
| GTGGAACATGGTGCTACAGT+TGG | 0.563718 | 8.1:-73658428 | MS.gene59608:CDS |
| AGCACATCAAGAAGTGTGCT+AGG | 0.569454 | 8.1:+73655634 | None:intergenic |
| TCCTTCTGCTGATGTTTCAG+TGG | 0.571359 | 8.1:+73655454 | None:intergenic |
| ATTCAAGAAAGCCAGAAGCA+TGG | 0.581643 | 8.1:-73655069 | MS.gene59608:CDS |
| TCGTAGAAGGTTAATTGACA+TGG | 0.582120 | 8.1:+73658688 | None:intergenic |
| GATCTTGGGGCCATAAGTAA+CGG | 0.585908 | 8.1:-73655532 | MS.gene59608:CDS |
| TCCACTGAAACATCAGCAGA+AGG | 0.591596 | 8.1:-73655455 | MS.gene59608:CDS |
| CAACTAGTTATACTTGCTGC+CGG | 0.591719 | 8.1:-73657574 | MS.gene59608:CDS |
| CTGACACTTGCTGAAAGAAG+TGG | 0.597037 | 8.1:-73655664 | MS.gene59608:CDS |
| TCAGCAGAAGGACATGAGAC+TGG | 0.601633 | 8.1:-73655443 | MS.gene59608:CDS |
| GAAATGAATAACCTTAGAGA+GGG | 0.604564 | 8.1:+73658634 | None:intergenic |
| TATACTTGCTGCCGGAGACA+AGG | 0.610187 | 8.1:-73657566 | MS.gene59608:intron |
| GATGTTTCAGTGGAAAAGCA+GGG | 0.610233 | 8.1:+73655464 | None:intergenic |
| AATGAAACTTGTTGTCAACA+TGG | 0.623343 | 8.1:-73656236 | MS.gene59608:CDS |
| TCAATTAACCTTCTACGACA+TGG | 0.625289 | 8.1:-73658683 | MS.gene59608:CDS |
| GACATCTATCAAGATATCTG+AGG | 0.630486 | 8.1:-73658169 | MS.gene59608:intron |
| GCACATCAAGAAGTGTGCTA+GGG | 0.636852 | 8.1:+73655635 | None:intergenic |
| TTGTCAACATGGTAATGGGA+AGG | 0.637666 | 8.1:-73656225 | MS.gene59608:intron |
| GATAGATGTCTCAGCATCAA+CGG | 0.646112 | 8.1:+73658182 | None:intergenic |
| TATGATGAATGCTTTCTCTG+AGG | 0.646238 | 8.1:-73655689 | MS.gene59608:CDS |
| ATGGTAGTGTGATGAACTCG+TGG | 0.651669 | 8.1:-73658447 | MS.gene59608:intron |
| TGTGATGAACTCGTGGAACA+TGG | 0.661566 | 8.1:-73658440 | MS.gene59608:CDS |
| ATGTTTCAGTGGAAAAGCAG+GGG | 0.666554 | 8.1:+73655465 | None:intergenic |
| CAGGCAATCAAAGCAAAAGG+TGG | 0.667806 | 8.1:-73657649 | MS.gene59608:CDS |
| TCAAGAAAGCCAGAAGCATG+GGG | 0.690032 | 8.1:-73655067 | MS.gene59608:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTTATTTATCAAAAACA+CGG | + | chr8.1:73657661-73657680 | None:intergenic | 15.0% |
| !!! | ATTGAAAGTTTCTATTTTTA+GGG | - | chr8.1:73655698-73655717 | MS.gene59608:intron | 15.0% |
| !! | ATTCTCAGAATGTTAATAAA+AGG | + | chr8.1:73658178-73658197 | None:intergenic | 20.0% |
| !! | CCATATAAATTAAATTTCAG+TGG | - | chr8.1:73657390-73657409 | MS.gene59608:intron | 20.0% |
| !! | CTAAAAATAGAAACTTTCAA+TGG | + | chr8.1:73655699-73655718 | None:intergenic | 20.0% |
| !! | CTAATCTGAATTTATCTAAT+AGG | + | chr8.1:73657911-73657930 | None:intergenic | 20.0% |
| !! | CTTATGTATAATAAGCTATT+TGG | + | chr8.1:73655171-73655190 | None:intergenic | 20.0% |
| !! | GAAAATAAAGTTGTTAGAAA+AGG | - | chr8.1:73656633-73656652 | MS.gene59608:intron | 20.0% |
| !! | TAAGTTGCAATTTATATCAA+AGG | + | chr8.1:73656062-73656081 | None:intergenic | 20.0% |
| !! | TAATTCTTGCATTCAAAATT+AGG | + | chr8.1:73655802-73655821 | None:intergenic | 20.0% |
| !! | TATAAATTAAATTTCAGTGG+TGG | - | chr8.1:73657393-73657412 | MS.gene59608:intron | 20.0% |
| !! | TTCAATAATGCAATCTAAAA+TGG | + | chr8.1:73656585-73656604 | None:intergenic | 20.0% |
| !! | TTTAGATTGCATTATTGAAA+AGG | - | chr8.1:73656586-73656605 | MS.gene59608:intron | 20.0% |
| !!! | ATATCTGTGATATTTTTTGA+AGG | - | chr8.1:73658196-73658215 | MS.gene59608:CDS | 20.0% |
| !!! | CATTGAAAGTTTCTATTTTT+AGG | - | chr8.1:73655697-73655716 | MS.gene59608:intron | 20.0% |
| !!! | CCACTGAAATTTAATTTATA+TGG | + | chr8.1:73657393-73657412 | None:intergenic | 20.0% |
| !!! | TGCAGTTATTATTTTGAATT+TGG | - | chr8.1:73655673-73655692 | MS.gene59608:CDS | 20.0% |
| !!! | TTGTAGTTTTTCATTTTCAA+CGG | + | chr8.1:73657355-73657374 | None:intergenic | 20.0% |
| ! | AAAGTAATACTTCAGATAGA+AGG | + | chr8.1:73656374-73656393 | None:intergenic | 25.0% |
| ! | AGAGAGTAGATTTATTGTAT+AGG | + | chr8.1:73657285-73657304 | None:intergenic | 25.0% |
| ! | AGTAGATTTATTGTATAGGA+GGG | + | chr8.1:73657281-73657300 | None:intergenic | 25.0% |
| ! | ATAAGCACTTATTTCATAAG+TGG | - | chr8.1:73655186-73655205 | MS.gene59608:intron | 25.0% |
| ! | ATACAATAAATCTACTCTCT+AGG | - | chr8.1:73657285-73657304 | MS.gene59608:intron | 25.0% |
| ! | ATTTAAAAATACCTTGTCTC+CGG | + | chr8.1:73656198-73656217 | None:intergenic | 25.0% |
| ! | CATAAGCTTTCATATGATAA+AGG | - | chr8.1:73657063-73657082 | MS.gene59608:intron | 25.0% |
| ! | CGCATGTATATATTATAATG+AGG | - | chr8.1:73658422-73658441 | MS.gene59608:CDS | 25.0% |
| ! | CTAAAAAATTCAACACGAAA+CGG | + | chr8.1:73655484-73655503 | None:intergenic | 25.0% |
| ! | CTTTATCATATGAAAGCTTA+TGG | + | chr8.1:73657065-73657084 | None:intergenic | 25.0% |
| ! | GAATTGAACCAATTTAAACA+AGG | + | chr8.1:73656794-73656813 | None:intergenic | 25.0% |
| ! | GCATATATTCAAACATTCTA+CGG | + | chr8.1:73655859-73655878 | None:intergenic | 25.0% |
| ! | GCATATTAGCATTTCTTATT+TGG | - | chr8.1:73657963-73657982 | MS.gene59608:intron | 25.0% |
| ! | GTAACTATATTTGCATATCA+AGG | - | chr8.1:73655967-73655986 | MS.gene59608:intron | 25.0% |
| ! | GTCTGTTGAAAGTTATTTAA+TGG | - | chr8.1:73658455-73658474 | MS.gene59608:intron | 25.0% |
| ! | TAATGAGATGACAATAAATG+TGG | - | chr8.1:73656463-73656482 | MS.gene59608:intron | 25.0% |
| ! | TACGTCTCTTCTATATAAAA+GGG | + | chr8.1:73656998-73657017 | None:intergenic | 25.0% |
| ! | TCATTACAGTTTAGTCTATT+TGG | + | chr8.1:73657216-73657235 | None:intergenic | 25.0% |
| ! | TGAATCAGAAAACAAGAAAA+TGG | - | chr8.1:73657635-73657654 | MS.gene59608:CDS | 25.0% |
| ! | TTAAAATGAAATCGAAAAGC+TGG | + | chr8.1:73656722-73656741 | None:intergenic | 25.0% |
| !! | TATTACTTTAAGTTCCCAAA+AGG | - | chr8.1:73656385-73656404 | MS.gene59608:intron | 25.0% |
| !!! | ATATTTTTTGAAGGATCTTG+GGG | - | chr8.1:73658205-73658224 | MS.gene59608:CDS | 25.0% |
| !!! | ATGATAATCGACTTTTCAAA+TGG | - | chr8.1:73656022-73656041 | MS.gene59608:intron | 25.0% |
| !!! | GATATTTTTTGAAGGATCTT+GGG | - | chr8.1:73658204-73658223 | MS.gene59608:CDS | 25.0% |
| !!! | TAACTGTTTTTAAGCATTGT+TGG | + | chr8.1:73658263-73658282 | None:intergenic | 25.0% |
| !!! | TGATATTTTTTGAAGGATCT+TGG | - | chr8.1:73658203-73658222 | MS.gene59608:CDS | 25.0% |
| AAACTAAGTTGCTACAGTAA+CGG | + | chr8.1:73656822-73656841 | None:intergenic | 30.0% | |
| AACAAATAGTTGTCACATCA+AGG | + | chr8.1:73655445-73655464 | None:intergenic | 30.0% | |
| AACGGCATGTTTAAATTGAA+AGG | - | chr8.1:73658236-73658255 | MS.gene59608:CDS | 30.0% | |
| ACAAATCATGTACAGTAATC+AGG | + | chr8.1:73657258-73657277 | None:intergenic | 30.0% | |
| ACCGCATAAATACAATTACA+AGG | + | chr8.1:73656941-73656960 | None:intergenic | 30.0% | |
| ACTTAGTCAAAGAAATGTAG+TGG | + | chr8.1:73655917-73655936 | None:intergenic | 30.0% | |
| ACTTCCAAATTATGAACAGA+AGG | + | chr8.1:73657572-73657591 | None:intergenic | 30.0% | |
| AGAAATGCTAATATGCAATC+TGG | + | chr8.1:73657959-73657978 | None:intergenic | 30.0% | |
| ATATGCAATCTGGATGAATT+TGG | + | chr8.1:73657949-73657968 | None:intergenic | 30.0% | |
| CTACGTCTCTTCTATATAAA+AGG | + | chr8.1:73656999-73657018 | None:intergenic | 30.0% | |
| CTCTTCTATATAAAAGGGAA+CGG | + | chr8.1:73656993-73657012 | None:intergenic | 30.0% | |
| CTTGAGCAAATTAATGGAAA+AGG | - | chr8.1:73655528-73655547 | MS.gene59608:CDS | 30.0% | |
| GAAAATAAAGACATGCAATC+TGG | + | chr8.1:73657996-73658015 | None:intergenic | 30.0% | |
| GAAATGAATAACCTTAGAGA+GGG | + | chr8.1:73655119-73655138 | None:intergenic | 30.0% | |
| GAGTAGATTTATTGTATAGG+AGG | + | chr8.1:73657282-73657301 | None:intergenic | 30.0% | |
| GCCTTGTAATTGTATTTATG+CGG | - | chr8.1:73656937-73656956 | MS.gene59608:intron | 30.0% | |
| GGAAAGAAATCTTTCTTTCT+GGG | - | chr8.1:73657470-73657489 | MS.gene59608:intron | 30.0% | |
| GGAAATATGAAAACATCCTA+TGG | - | chr8.1:73657814-73657833 | MS.gene59608:intron | 30.0% | |
| TAAAGTTTGAACTCGTTTGT+AGG | - | chr8.1:73658657-73658676 | MS.gene59608:CDS | 30.0% | |
| TATGCAATCTGGATGAATTT+GGG | + | chr8.1:73657948-73657967 | None:intergenic | 30.0% | |
| TCTGTTCATAATTTGGAAGT+AGG | - | chr8.1:73657572-73657591 | MS.gene59608:CDS | 30.0% | |
| TGAAATGAATAACCTTAGAG+AGG | + | chr8.1:73655120-73655139 | None:intergenic | 30.0% | |
| TGAACCAATTTAAACAAGGT+TGG | + | chr8.1:73656790-73656809 | None:intergenic | 30.0% | |
| TGTATTTATGCGGTTATAGT+AGG | - | chr8.1:73656947-73656966 | MS.gene59608:intron | 30.0% | |
| TTATGAACAGAAGGAGAAAA+CGG | + | chr8.1:73657563-73657582 | None:intergenic | 30.0% | |
| TTCATAATTTGGAAGTAGGA+AGG | - | chr8.1:73657576-73657595 | MS.gene59608:CDS | 30.0% | |
| TTCTCCTTCTGTTCATAATT+TGG | - | chr8.1:73657565-73657584 | MS.gene59608:intron | 30.0% | |
| TTGTAGCATTCATAGTTAGA+TGG | - | chr8.1:73658528-73658547 | MS.gene59608:intron | 30.0% | |
| TTTAAACATGCCGTTACTTA+TGG | + | chr8.1:73658231-73658250 | None:intergenic | 30.0% | |
| ! | AATGCCAACCTTGTTTAAAT+TGG | - | chr8.1:73656783-73656802 | MS.gene59608:intron | 30.0% |
| ! | ATAGTACTGGAGATTATGTT+TGG | - | chr8.1:73655744-73655763 | MS.gene59608:intron | 30.0% |
| ! | ATTCCAGTGTATTTCCTTTT+GGG | + | chr8.1:73656402-73656421 | None:intergenic | 30.0% |
| ! | CTGCAATCAATCACATATTT+TGG | + | chr8.1:73655658-73655677 | None:intergenic | 30.0% |
| ! | GTTTTATAGAACTCTACTTG+TGG | - | chr8.1:73655232-73655251 | MS.gene59608:intron | 30.0% |
| ! | TAATGCAATCTAAAATGGAC+TGG | + | chr8.1:73656580-73656599 | None:intergenic | 30.0% |
| ! | TATCTGATAGTCGCATATTT+TGG | + | chr8.1:73658587-73658606 | None:intergenic | 30.0% |
| !! | AATGAAACTTGTTGTCAACA+TGG | - | chr8.1:73657514-73657533 | MS.gene59608:intron | 30.0% |
| !! | ATCGACTTTTCAAATGGAAT+TGG | - | chr8.1:73656028-73656047 | MS.gene59608:intron | 30.0% |
| !!! | AGATTGGATTTTTAGGTTTG+GGG | - | chr8.1:73655026-73655045 | MS.gene59608:CDS | 30.0% |
| !!! | ATTTTTAGGTTTGGGGATAA+TGG | - | chr8.1:73655033-73655052 | MS.gene59608:CDS | 30.0% |
| !!! | CGTTTCGTGTTGAATTTTTT+AGG | - | chr8.1:73655482-73655501 | MS.gene59608:CDS | 30.0% |
| !!! | GAGATTGGATTTTTAGGTTT+GGG | - | chr8.1:73655025-73655044 | MS.gene59608:CDS | 30.0% |
| !!! | TTCGTGTTGAATTTTTTAGG+TGG | - | chr8.1:73655485-73655504 | MS.gene59608:CDS | 30.0% |
| !!! | TTTTTAGGTGGTGTTTGATA+AGG | - | chr8.1:73655497-73655516 | MS.gene59608:CDS | 30.0% |
| !!! | TTTTTAGGTTTGGGGATAAT+GGG | - | chr8.1:73655034-73655053 | MS.gene59608:CDS | 30.0% |
| AAAACACACACTCGTTTGAA+AGG | + | chr8.1:73656344-73656363 | None:intergenic | 35.0% | |
| ATATTCAAACATTCTACGGC+AGG | + | chr8.1:73655855-73655874 | None:intergenic | 35.0% | |
| ATGATGAATGCTTTCTCTGA+GGG | - | chr8.1:73658062-73658081 | MS.gene59608:intron | 35.0% | |
| CATGTAAAATGCAAACTACC+AGG | + | chr8.1:73656005-73656024 | None:intergenic | 35.0% | |
| CGGAAAGAAATCTTTCTTTC+TGG | - | chr8.1:73657469-73657488 | MS.gene59608:intron | 35.0% | |
| GAATAGTGCAACTCTCTAAA+TGG | + | chr8.1:73656282-73656301 | None:intergenic | 35.0% | |
| GACATCTATCAAGATATCTG+AGG | - | chr8.1:73655581-73655600 | MS.gene59608:intron | 35.0% | |
| GGCAAGTATAACACTTCAAA+TGG | + | chr8.1:73657044-73657063 | None:intergenic | 35.0% | |
| GGTGTTCTTGAGCAAATTAA+TGG | - | chr8.1:73655522-73655541 | MS.gene59608:CDS | 35.0% | |
| GTTAGAAAAGGATGTTGAAG+AGG | - | chr8.1:73656645-73656664 | MS.gene59608:intron | 35.0% | |
| TATGAACAGAAGGAGAAAAC+GGG | + | chr8.1:73657562-73657581 | None:intergenic | 35.0% | |
| TATGATGAATGCTTTCTCTG+AGG | - | chr8.1:73658061-73658080 | MS.gene59608:intron | 35.0% | |
| TATGTGAACATTGCCGTAAT+AGG | - | chr8.1:73657101-73657120 | MS.gene59608:intron | 35.0% | |
| TCAATTAACCTTCTACGACA+TGG | - | chr8.1:73655067-73655086 | MS.gene59608:CDS | 35.0% | |
| TCGTAGAAGGTTAATTGACA+TGG | + | chr8.1:73655065-73655084 | None:intergenic | 35.0% | |
| TGACATATTGACATGTCCAT+AGG | + | chr8.1:73657833-73657852 | None:intergenic | 35.0% | |
| TGAGAGAGAAATGGAACAAT+TGG | - | chr8.1:73656843-73656862 | MS.gene59608:intron | 35.0% | |
| TGAGGACAATGATAAAAGCT+GGG | + | chr8.1:73657327-73657346 | None:intergenic | 35.0% | |
| TTACAAGGCATACAATTGCA+AGG | + | chr8.1:73656926-73656945 | None:intergenic | 35.0% | |
| TTCGATTAAAGCCTAATGAG+AGG | + | chr8.1:73657166-73657185 | None:intergenic | 35.0% | |
| TTCTATATAAAAGGGAACGG+TGG | + | chr8.1:73656990-73657009 | None:intergenic | 35.0% | |
| TTTGATTGCCTGTAGAAAGT+AGG | + | chr8.1:73656093-73656112 | None:intergenic | 35.0% | |
| ! | CTCATTAGGCTTTAATCGAA+GGG | - | chr8.1:73657166-73657185 | MS.gene59608:intron | 35.0% |
| ! | CTTGTTGTCAACATGGTAAT+GGG | - | chr8.1:73657521-73657540 | MS.gene59608:intron | 35.0% |
| ! | GATTCCAGTGTATTTCCTTT+TGG | + | chr8.1:73656403-73656422 | None:intergenic | 35.0% |
| ! | TACAGCATTTTCATCTCCAA+GGG | + | chr8.1:73658339-73658358 | None:intergenic | 35.0% |
| ! | TCTCATTAGGCTTTAATCGA+AGG | - | chr8.1:73657165-73657184 | MS.gene59608:intron | 35.0% |
| !! | ACTTGTTGTCAACATGGTAA+TGG | - | chr8.1:73657520-73657539 | MS.gene59608:intron | 35.0% |
| !! | AGTCACGTGACTTTTTAAAG+TGG | + | chr8.1:73658496-73658515 | None:intergenic | 35.0% |
| !! | CTTAGTTTGTGAGAGAGAAA+TGG | - | chr8.1:73656834-73656853 | MS.gene59608:intron | 35.0% |
| !!! | GGAGATTGGATTTTTAGGTT+TGG | - | chr8.1:73655024-73655043 | MS.gene59608:CDS | 35.0% |
| AAGATCTGCCTACTTTCTAC+AGG | - | chr8.1:73656082-73656101 | MS.gene59608:intron | 40.0% | |
| AGAAAAGGATGTTGAAGAGG+AGG | - | chr8.1:73656648-73656667 | MS.gene59608:intron | 40.0% | |
| AGACTGTTTGAGAGAGCTTA+CGG | + | chr8.1:73657866-73657885 | None:intergenic | 40.0% | |
| ATGAACAGAAGGAGAAAACG+GGG | + | chr8.1:73657561-73657580 | None:intergenic | 40.0% | |
| ATGTTTCAGTGGAAAAGCAG+GGG | + | chr8.1:73658288-73658307 | None:intergenic | 40.0% | |
| ATTCAAGAAAGCCAGAAGCA+TGG | - | chr8.1:73658681-73658700 | MS.gene59608:CDS | 40.0% | |
| CTACAGGCAATCAAAGCAAA+AGG | - | chr8.1:73656098-73656117 | MS.gene59608:intron | 40.0% | |
| CTGAGGACAATGATAAAAGC+TGG | + | chr8.1:73657328-73657347 | None:intergenic | 40.0% | |
| CTGGAGATTATGTTTGGATG+AGG | - | chr8.1:73655750-73655769 | MS.gene59608:intron | 40.0% | |
| CTTCCAGCATTTGATGTACT+CGG | - | chr8.1:73657449-73657468 | MS.gene59608:intron | 40.0% | |
| CTTTCTTGAAGCTCCTGTTT+CGG | - | chr8.1:73656127-73656146 | MS.gene59608:intron | 40.0% | |
| GAAATCTTTCTTTCTGGGTG+AGG | - | chr8.1:73657475-73657494 | MS.gene59608:intron | 40.0% | |
| GACCTATTGCCAACCTATTA+CGG | + | chr8.1:73657117-73657136 | None:intergenic | 40.0% | |
| GAGCTTTCTGATAGCTAATC+TGG | + | chr8.1:73656534-73656553 | None:intergenic | 40.0% | |
| GATAGATGTCTCAGCATCAA+CGG | + | chr8.1:73655571-73655590 | None:intergenic | 40.0% | |
| GATGTTTCAGTGGAAAAGCA+GGG | + | chr8.1:73658289-73658308 | None:intergenic | 40.0% | |
| GCTGGTAAGTTACTGTGATA+AGG | - | chr8.1:73658136-73658155 | MS.gene59608:intron | 40.0% | |
| GGTAAGTTACTGTGATAAGG+AGG | - | chr8.1:73658139-73658158 | MS.gene59608:intron | 40.0% | |
| GTTCCCAAAAGGAAATACAC+TGG | - | chr8.1:73656396-73656415 | MS.gene59608:intron | 40.0% | |
| TAGCTATCACGTAGAGCTTA+TGG | - | chr8.1:73657793-73657812 | MS.gene59608:intron | 40.0% | |
| TAGGTGGTGTTTGATAAGGA+TGG | - | chr8.1:73655501-73655520 | MS.gene59608:CDS | 40.0% | |
| TGAACATTGCCGTAATAGGT+TGG | - | chr8.1:73657105-73657124 | MS.gene59608:intron | 40.0% | |
| TGATGTTTCAGTGGAAAAGC+AGG | + | chr8.1:73658290-73658309 | None:intergenic | 40.0% | |
| TGCTGAGAAGTCTATAGTAC+TGG | - | chr8.1:73655731-73655750 | MS.gene59608:intron | 40.0% | |
| TTTCCGAGTACATCAAATGC+TGG | + | chr8.1:73657455-73657474 | None:intergenic | 40.0% | |
| TTTCTTGAAGCTCCTGTTTC+GGG | - | chr8.1:73656128-73656147 | MS.gene59608:intron | 40.0% | |
| ! | CAACTAGTTATACTTGCTGC+CGG | - | chr8.1:73656176-73656195 | MS.gene59608:intron | 40.0% |
| ! | GTACAGCATTTTCATCTCCA+AGG | + | chr8.1:73658340-73658359 | None:intergenic | 40.0% |
| ! | TCATTTTCAACGGACAACTG+AGG | + | chr8.1:73657345-73657364 | None:intergenic | 40.0% |
| ! | TTCAAGAAAGCCAGAAGCAT+GGG | - | chr8.1:73658682-73658701 | MS.gene59608:CDS | 40.0% |
| !! | CTCAGTTTTGTGACATCTGA+TGG | - | chr8.1:73655284-73655303 | MS.gene59608:intron | 40.0% |
| !! | GTGGTGGATTCGTTTGATAT+AGG | - | chr8.1:73657409-73657428 | MS.gene59608:intron | 40.0% |
| !! | TTGTCAACATGGTAATGGGA+AGG | - | chr8.1:73657525-73657544 | MS.gene59608:intron | 40.0% |
| AGGTTGGCAATAGGTCCATT+GGG | - | chr8.1:73657121-73657140 | MS.gene59608:intron | 45.0% | |
| AGTAAGAAGCCTGCAGAAGA+TGG | - | chr8.1:73656152-73656171 | MS.gene59608:intron | 45.0% | |
| ATGGCTTCAAGGTCACTGTT+TGG | - | chr8.1:73655086-73655105 | MS.gene59608:intron | 45.0% | |
| ATGTTGAAGAGGAGGAGTGA+GGG | - | chr8.1:73656656-73656675 | MS.gene59608:intron | 45.0% | |
| CAGGCAATCAAAGCAAAAGG+TGG | - | chr8.1:73656101-73656120 | MS.gene59608:intron | 45.0% | |
| CATTTCTTGACAACAGCTGC+AGG | + | chr8.1:73655355-73655374 | None:intergenic | 45.0% | |
| CGGCAGCAAGTATAACTAGT+TGG | + | chr8.1:73656178-73656197 | None:intergenic | 45.0% | |
| CGTGCACAGCTGAAAAATCA+AGG | + | chr8.1:73658717-73658736 | None:intergenic | 45.0% | |
| GACTGTTTGAGAGAGCTTAC+GGG | + | chr8.1:73657865-73657884 | None:intergenic | 45.0% | |
| GATCTTGGGGCCATAAGTAA+CGG | - | chr8.1:73658218-73658237 | MS.gene59608:CDS | 45.0% | |
| GGACAATGATAAAAGCTGGG+AGG | + | chr8.1:73657324-73657343 | None:intergenic | 45.0% | |
| TAGCACACTTCTTGATGTGC+TGG | - | chr8.1:73658118-73658137 | MS.gene59608:intron | 45.0% | |
| TCAAGGCTGTAAGCATAACC+TGG | - | chr8.1:73655984-73656003 | MS.gene59608:intron | 45.0% | |
| TCCACTGAAACATCAGCAGA+AGG | - | chr8.1:73658295-73658314 | MS.gene59608:intron | 45.0% | |
| TCCATTGGGATTGCACAGAT+GGG | - | chr8.1:73657135-73657154 | MS.gene59608:intron | 45.0% | |
| TCCTTCTGCTGATGTTTCAG+TGG | + | chr8.1:73658299-73658318 | None:intergenic | 45.0% | |
| TCTTTCTTTCTGGGTGAGGT+TGG | - | chr8.1:73657479-73657498 | MS.gene59608:intron | 45.0% | |
| TGTGATGAACTCGTGGAACA+TGG | - | chr8.1:73655310-73655329 | MS.gene59608:intron | 45.0% | |
| TTGGAACAGAACCCTCTCTA+AGG | - | chr8.1:73655105-73655124 | MS.gene59608:intron | 45.0% | |
| TTTCTGGGTGAGGTTGGAAA+TGG | - | chr8.1:73657485-73657504 | MS.gene59608:intron | 45.0% | |
| ! | AAAAGTGCAGCATAGCAGGA+TGG | + | chr8.1:73656257-73656276 | None:intergenic | 45.0% |
| ! | ACACTCGTTTGAAAGGCATG+AGG | + | chr8.1:73656337-73656356 | None:intergenic | 45.0% |
| ! | AGCACATCAAGAAGTGTGCT+AGG | + | chr8.1:73658119-73658138 | None:intergenic | 45.0% |
| ! | ATGGTAGTGTGATGAACTCG+TGG | - | chr8.1:73655303-73655322 | MS.gene59608:intron | 45.0% |
| ! | CTGACACTTGCTGAAAGAAG+TGG | - | chr8.1:73658086-73658105 | MS.gene59608:intron | 45.0% |
| ! | GCACATCAAGAAGTGTGCTA+GGG | + | chr8.1:73658118-73658137 | None:intergenic | 45.0% |
| ! | TAGGTTGGCAATAGGTCCAT+TGG | - | chr8.1:73657120-73657139 | MS.gene59608:intron | 45.0% |
| ! | TCAAGAAAGCCAGAAGCATG+GGG | - | chr8.1:73658683-73658702 | MS.gene59608:CDS | 45.0% |
| ! | TGCCGTAATAGGTTGGCAAT+AGG | - | chr8.1:73657112-73657131 | MS.gene59608:intron | 45.0% |
| ACTAGTTGGCCATCTTCTGC+AGG | + | chr8.1:73656164-73656183 | None:intergenic | 50.0% | |
| ATCTGATCCTGCAGCTGCTT+TGG | - | chr8.1:73655396-73655415 | MS.gene59608:CDS | 50.0% | |
| CATTGGGATTGCACAGATGG+GGG | - | chr8.1:73657137-73657156 | MS.gene59608:intron | 50.0% | |
| CCATTGGGATTGCACAGATG+GGG | - | chr8.1:73657136-73657155 | MS.gene59608:intron | 50.0% | |
| CCTTCTACGACATGGCTTCA+AGG | - | chr8.1:73655075-73655094 | MS.gene59608:intron | 50.0% | |
| CCTTGAAGCCATGTCGTAGA+AGG | + | chr8.1:73655078-73655097 | None:intergenic | 50.0% | |
| GATGTTGAAGAGGAGGAGTG+AGG | - | chr8.1:73656655-73656674 | MS.gene59608:intron | 50.0% | |
| GGCAAAGAAATGTGACTGCG+AGG | + | chr8.1:73658566-73658585 | None:intergenic | 50.0% | |
| GGCTTCTTACTACCCGAAAC+AGG | + | chr8.1:73656143-73656162 | None:intergenic | 50.0% | |
| GTCCATTGGGATTGCACAGA+TGG | - | chr8.1:73657134-73657153 | MS.gene59608:intron | 50.0% | |
| TCAGCAGAAGGACATGAGAC+TGG | - | chr8.1:73658307-73658326 | MS.gene59608:intron | 50.0% | |
| ! | AAAGCCAGAAGCATGGGGTT+GGG | - | chr8.1:73658688-73658707 | MS.gene59608:CDS | 50.0% |
| ! | GGCTAAAAGTGCAGCATAGC+AGG | + | chr8.1:73656261-73656280 | None:intergenic | 50.0% |
| ! | TATACTTGCTGCCGGAGACA+AGG | - | chr8.1:73656184-73656203 | MS.gene59608:intron | 50.0% |
| !! | GTGGAACATGGTGCTACAGT+TGG | - | chr8.1:73655322-73655341 | MS.gene59608:intron | 50.0% |
| CCCCATCTGTGCAATCCCAA+TGG | + | chr8.1:73657139-73657158 | None:intergenic | 55.0% | |
| GATGGGGGTTGCCTCTCATT+AGG | - | chr8.1:73657152-73657171 | MS.gene59608:intron | 55.0% | |
| TGTCGCAGCTGCAGCAAATG+AGG | - | chr8.1:73658367-73658386 | MS.gene59608:CDS | 55.0% | |
| ! | GAAAGCCAGAAGCATGGGGT+TGG | - | chr8.1:73658687-73658706 | MS.gene59608:CDS | 55.0% |
| ! | GAAGGACATGAGACTGGCTC+TGG | - | chr8.1:73658313-73658332 | MS.gene59608:intron | 55.0% |
| ! | TCATTTGCTGCAGCTGCGAC+AGG | + | chr8.1:73658368-73658387 | None:intergenic | 55.0% |
| ! | TGATCCTGCAGCTGCTTTGG+CGG | - | chr8.1:73655399-73655418 | MS.gene59608:CDS | 55.0% |
| CATGCGCTCTCACGCACACT+CGG | + | chr8.1:73658408-73658427 | None:intergenic | 60.0% | |
| GTCTCCCAACCCCATGCTTC+TGG | + | chr8.1:73658695-73658714 | None:intergenic | 60.0% | |
| !! | ATGAGACTGGCTCTGGCCCT+TGG | - | chr8.1:73658320-73658339 | MS.gene59608:intron | 60.0% |
| CTGACCGCCAAAGCAGCTGC+AGG | + | chr8.1:73655406-73655425 | None:intergenic | 65.0% | |
| GCTGCAGCTGCGACAGGCAT+TGG | + | chr8.1:73658362-73658381 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 73655022 | 73658750 | 73655022 | ID=MS.gene59608 |
| chr8.1 | mRNA | 73655022 | 73658750 | 73655022 | ID=MS.gene59608.t1;Parent=MS.gene59608 |
| chr8.1 | exon | 73658646 | 73658750 | 73658646 | ID=MS.gene59608.t1.exon1;Parent=MS.gene59608.t1 |
| chr8.1 | CDS | 73658646 | 73658750 | 73658646 | ID=cds.MS.gene59608.t1;Parent=MS.gene59608.t1 |
| chr8.1 | exon | 73658352 | 73658462 | 73658352 | ID=MS.gene59608.t1.exon2;Parent=MS.gene59608.t1 |
| chr8.1 | CDS | 73658352 | 73658462 | 73658352 | ID=cds.MS.gene59608.t1;Parent=MS.gene59608.t1 |
| chr8.1 | exon | 73658170 | 73658268 | 73658170 | ID=MS.gene59608.t1.exon3;Parent=MS.gene59608.t1 |
| chr8.1 | CDS | 73658170 | 73658268 | 73658170 | ID=cds.MS.gene59608.t1;Parent=MS.gene59608.t1 |
| chr8.1 | exon | 73657567 | 73657668 | 73657567 | ID=MS.gene59608.t1.exon4;Parent=MS.gene59608.t1 |
| chr8.1 | CDS | 73657567 | 73657668 | 73657567 | ID=cds.MS.gene59608.t1;Parent=MS.gene59608.t1 |
| chr8.1 | exon | 73656226 | 73656341 | 73656226 | ID=MS.gene59608.t1.exon5;Parent=MS.gene59608.t1 |
| chr8.1 | CDS | 73656226 | 73656341 | 73656226 | ID=cds.MS.gene59608.t1;Parent=MS.gene59608.t1 |
| chr8.1 | exon | 73655633 | 73655711 | 73655633 | ID=MS.gene59608.t1.exon6;Parent=MS.gene59608.t1 |
| chr8.1 | CDS | 73655633 | 73655711 | 73655633 | ID=cds.MS.gene59608.t1;Parent=MS.gene59608.t1 |
| chr8.1 | exon | 73655384 | 73655554 | 73655384 | ID=MS.gene59608.t1.exon7;Parent=MS.gene59608.t1 |
| chr8.1 | CDS | 73655384 | 73655554 | 73655384 | ID=cds.MS.gene59608.t1;Parent=MS.gene59608.t1 |
| chr8.1 | exon | 73655022 | 73655093 | 73655022 | ID=MS.gene59608.t1.exon8;Parent=MS.gene59608.t1 |
| chr8.1 | CDS | 73655022 | 73655093 | 73655022 | ID=cds.MS.gene59608.t1;Parent=MS.gene59608.t1 |
| Gene Sequence |
| Protein sequence |
