Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47905.t1 | XP_024627482.1 | 94.5 | 307 | 17 | 0 | 1 | 307 | 1 | 307 | 2.00E-160 | 575.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47905.t1 | Q949M8 | 54.9 | 306 | 127 | 2 | 1 | 306 | 22 | 316 | 8.2e-91 | 335.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47905.t1 | G7L8W3 | 94.5 | 307 | 17 | 0 | 1 | 307 | 1 | 307 | 1.4e-160 | 575.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47905 | MS.gene049066 | PPI |
| MS.gene47905 | MS.gene003315 | PPI |
| MS.gene05985 | MS.gene47905 | PPI |
| MS.gene015821 | MS.gene47905 | PPI |
| MS.gene47905 | MS.gene79722 | PPI |
| MS.gene47905 | MS.gene03058 | PPI |
| MS.gene47905 | MS.gene59608 | PPI |
| MS.gene47905 | MS.gene030927 | PPI |
| MS.gene030927 | MS.gene47905 | PPI |
| MS.gene47905 | MS.gene27946 | PPI |
| MS.gene67218 | MS.gene47905 | PPI |
| MS.gene98170 | MS.gene47905 | PPI |
| MS.gene47905 | MS.gene74531 | PPI |
| MS.gene47905 | MS.gene02110 | PPI |
| MS.gene47905 | MS.gene92143 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47905.t1 | MTR_8g088900 | 94.463 | 307 | 17 | 0 | 1 | 307 | 1 | 307 | 0.0 | 592 |
| MS.gene47905.t1 | MTR_8g102470 | 50.333 | 300 | 143 | 3 | 7 | 305 | 5 | 299 | 1.53e-98 | 292 |
| MS.gene47905.t1 | MTR_8g102470 | 50.333 | 300 | 143 | 3 | 7 | 305 | 29 | 323 | 4.00e-98 | 292 |
| MS.gene47905.t1 | MTR_2g099910 | 31.890 | 254 | 170 | 2 | 10 | 262 | 42 | 293 | 4.63e-36 | 132 |
| MS.gene47905.t1 | MTR_2g099910 | 34.483 | 203 | 130 | 2 | 10 | 211 | 42 | 242 | 1.13e-30 | 116 |
| MS.gene47905.t1 | MTR_8g028120 | 27.755 | 245 | 173 | 3 | 15 | 258 | 2 | 243 | 7.14e-30 | 115 |
| MS.gene47905.t1 | MTR_2g099910 | 33.690 | 187 | 121 | 2 | 10 | 195 | 42 | 226 | 3.01e-25 | 101 |
| MS.gene47905.t1 | MTR_6g069685 | 24.671 | 304 | 218 | 5 | 9 | 306 | 318 | 616 | 1.44e-21 | 95.5 |
| MS.gene47905.t1 | MTR_2g030400 | 25.914 | 301 | 196 | 9 | 9 | 288 | 35 | 329 | 2.05e-20 | 90.5 |
| MS.gene47905.t1 | MTR_2g030400 | 30.144 | 209 | 129 | 7 | 16 | 210 | 42 | 247 | 3.99e-20 | 88.6 |
| MS.gene47905.t1 | MTR_2g030400 | 26.894 | 264 | 169 | 8 | 16 | 258 | 42 | 302 | 4.18e-20 | 89.0 |
| MS.gene47905.t1 | MTR_2g030400 | 30.144 | 209 | 129 | 7 | 16 | 210 | 42 | 247 | 4.37e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47905.t1 | AT1G71180 | 54.902 | 306 | 127 | 2 | 1 | 306 | 22 | 316 | 1.21e-103 | 306 |
| MS.gene47905.t1 | AT1G71170 | 53.268 | 306 | 134 | 2 | 1 | 306 | 1 | 297 | 7.85e-103 | 303 |
| MS.gene47905.t1 | AT4G29120 | 47.987 | 298 | 149 | 3 | 9 | 305 | 33 | 325 | 1.19e-95 | 286 |
| MS.gene47905.t1 | AT3G25530 | 27.431 | 288 | 203 | 3 | 15 | 301 | 2 | 284 | 6.10e-31 | 117 |
| MS.gene47905.t1 | AT1G17650 | 29.644 | 253 | 171 | 4 | 13 | 262 | 7 | 255 | 7.67e-30 | 115 |
| MS.gene47905.t1 | AT1G17650 | 29.644 | 253 | 171 | 4 | 13 | 262 | 66 | 314 | 2.82e-29 | 115 |
| MS.gene47905.t1 | AT3G25530 | 28.472 | 288 | 189 | 5 | 15 | 301 | 2 | 273 | 9.21e-27 | 106 |
| MS.gene47905.t1 | AT3G25530 | 29.126 | 206 | 143 | 2 | 15 | 219 | 2 | 205 | 3.87e-26 | 103 |
| MS.gene47905.t1 | AT1G18270 | 25.000 | 296 | 213 | 4 | 15 | 306 | 323 | 613 | 1.29e-21 | 95.9 |
| MS.gene47905.t1 | AT1G18270 | 25.000 | 296 | 213 | 4 | 15 | 306 | 324 | 614 | 1.29e-21 | 95.9 |
| MS.gene47905.t1 | AT1G18270 | 25.000 | 296 | 213 | 4 | 15 | 306 | 323 | 613 | 1.43e-21 | 95.5 |
| MS.gene47905.t1 | AT1G18270 | 25.000 | 296 | 213 | 4 | 15 | 306 | 323 | 613 | 1.51e-21 | 95.5 |
| MS.gene47905.t1 | AT4G20930 | 28.440 | 218 | 139 | 7 | 16 | 219 | 40 | 254 | 3.09e-19 | 87.0 |
| MS.gene47905.t1 | AT4G20930 | 27.684 | 177 | 113 | 6 | 57 | 219 | 7 | 182 | 9.92e-14 | 70.5 |
Find 105 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGAAGAGAGAGGGAATT+TGG | 0.129204 | 4.1:-11708886 | None:intergenic |
| ACGAAGGCATTGGAGTTATT+TGG | 0.151791 | 4.1:+11709417 | MS.gene47905:CDS |
| AAAACCGTTGTTTGAAATAA+TGG | 0.184681 | 4.1:+11709224 | MS.gene47905:CDS |
| GGAAGGTGAATTTGCGAGTT+TGG | 0.245854 | 4.1:-11708917 | None:intergenic |
| GGATGATAAATAAGGATTTC+AGG | 0.252494 | 4.1:+11709445 | MS.gene47905:CDS |
| GTGGATGCGGTGATTGGGTT+TGG | 0.265810 | 4.1:-11708757 | None:intergenic |
| GAGTATCAAGTTAAGGATTT+AGG | 0.269336 | 4.1:+11709483 | MS.gene47905:CDS |
| TGGGAAGAGGATGATAAATA+AGG | 0.295134 | 4.1:+11709437 | MS.gene47905:CDS |
| CGGGTCGTGGATGCGGTGAT+TGG | 0.303864 | 4.1:-11708763 | None:intergenic |
| TCTGTTATTGATAGGATTAA+TGG | 0.305673 | 4.1:+11709636 | MS.gene47905:CDS |
| TTTACTGGTATGGTTGCTAA+TGG | 0.309860 | 4.1:+11709582 | MS.gene47905:CDS |
| AAACCGTTGTTTGAAATAAT+GGG | 0.320966 | 4.1:+11709225 | MS.gene47905:CDS |
| CGAAGGCATTGGAGTTATTT+GGG | 0.322668 | 4.1:+11709418 | MS.gene47905:CDS |
| GTGTTATTTCTGTTATTGAT+AGG | 0.359139 | 4.1:+11709628 | MS.gene47905:CDS |
| ATTGAAGAGAGAGGGAATTT+GGG | 0.361420 | 4.1:-11708885 | None:intergenic |
| GAGAGGGAATTTGGGTGAGA+TGG | 0.361588 | 4.1:-11708877 | None:intergenic |
| TTACTGGTATGGTTGCTAAT+GGG | 0.372029 | 4.1:+11709583 | MS.gene47905:CDS |
| AGAGGGAATTTGGGTGAGAT+GGG | 0.383239 | 4.1:-11708876 | None:intergenic |
| CCGGTATCCGGTGGGGATAT+CGG | 0.383577 | 4.1:+11709141 | MS.gene47905:CDS |
| GAGATTTCTTTAGCGAGATC+TGG | 0.387363 | 4.1:-11709078 | None:intergenic |
| TGGATGCGGTGATTGGGTTT+GGG | 0.390118 | 4.1:-11708756 | None:intergenic |
| AGATGGGTTGCGAGCGTAGA+AGG | 0.390367 | 4.1:-11708860 | None:intergenic |
| GTGTCTACAGTGACAGTGTT+GGG | 0.392820 | 4.1:-11709042 | None:intergenic |
| CGATTCCGATCCATCCGATT+CGG | 0.405924 | 4.1:-11708783 | None:intergenic |
| CAAGTTAAGGATTTAGGAAT+GGG | 0.417548 | 4.1:+11709489 | MS.gene47905:CDS |
| GCTAATGGGGATGGGAAGCT+TGG | 0.420897 | 4.1:+11709597 | MS.gene47905:CDS |
| ACCGCATCCACGACCCGAAT+CGG | 0.445574 | 4.1:+11708769 | MS.gene47905:CDS |
| GATTCCGATCCATCCGATTC+GGG | 0.447335 | 4.1:-11708782 | None:intergenic |
| ATAAATAAGGATTTCAGGCC+TGG | 0.449978 | 4.1:+11709450 | MS.gene47905:CDS |
| TCAATCGATGCTCCGGTATC+CGG | 0.450145 | 4.1:+11709129 | MS.gene47905:CDS |
| TCCGATTCGGGTCGTGGATG+CGG | 0.460578 | 4.1:-11708770 | None:intergenic |
| TTATGCTGAGTATCAAGTTA+AGG | 0.464856 | 4.1:+11709476 | MS.gene47905:CDS |
| CATTGGAGTTATTTGGGAAG+AGG | 0.466061 | 4.1:+11709424 | MS.gene47905:CDS |
| GATCCATCCGATTCGGGTCG+TGG | 0.466090 | 4.1:-11708776 | None:intergenic |
| GATGGGAAGCTTGGTGGTCA+AGG | 0.474146 | 4.1:+11709606 | MS.gene47905:CDS |
| GGGTCGTGGATGCGGTGATT+GGG | 0.482315 | 4.1:-11708762 | None:intergenic |
| GCAATTAAGAATGGTGCAGC+GGG | 0.484227 | 4.1:+11709393 | MS.gene47905:CDS |
| CCGATATCCCCACCGGATAC+CGG | 0.488724 | 4.1:-11709141 | None:intergenic |
| TCAAGTTAAGGATTTAGGAA+TGG | 0.488927 | 4.1:+11709488 | MS.gene47905:CDS |
| CGCTTGGTCAATCGATGCTC+CGG | 0.491216 | 4.1:+11709122 | MS.gene47905:CDS |
| GTCGGAGGAGTTAGCGAGAT+GGG | 0.496377 | 4.1:-11708938 | None:intergenic |
| TGGATCGGAATCGGAGTGAT+GGG | 0.497760 | 4.1:+11708793 | MS.gene47905:CDS |
| GTAGAAGGTGAGAGTGTAAC+CGG | 0.498278 | 4.1:-11708845 | None:intergenic |
| AAAACGAAGTGGGCTTGACT+TGG | 0.512591 | 4.1:+11709356 | MS.gene47905:CDS |
| TACTGGTATGGTTGCTAATG+GGG | 0.513602 | 4.1:+11709584 | MS.gene47905:CDS |
| ATGGATCGGAATCGGAGTGA+TGG | 0.514720 | 4.1:+11708792 | MS.gene47905:CDS |
| TAAATAAGGATTTCAGGCCT+GGG | 0.516692 | 4.1:+11709451 | MS.gene47905:CDS |
| TTCAACTACAGAGGCTTCAC+CGG | 0.516853 | 4.1:-11709196 | None:intergenic |
| CGGAGTGATGGGCGGCGCAA+TGG | 0.519149 | 4.1:+11708804 | MS.gene47905:CDS |
| TGCAGCGGGGACGAAGGCAT+TGG | 0.519441 | 4.1:+11709407 | MS.gene47905:CDS |
| TGCAATTAAGAATGGTGCAG+CGG | 0.524648 | 4.1:+11709392 | MS.gene47905:CDS |
| CGAATCGGATGGATCGGAAT+CGG | 0.525123 | 4.1:+11708784 | MS.gene47905:CDS |
| ATCGATGCTCCGGTATCCGG+TGG | 0.526643 | 4.1:+11709132 | MS.gene47905:CDS |
| AATGGGAAAAGCAACATACA+TGG | 0.530781 | 4.1:+11709242 | MS.gene47905:CDS |
| AATGGGGATGGGAAGCTTGG+TGG | 0.531606 | 4.1:+11709600 | MS.gene47905:CDS |
| GCCTCACGCGTCATCTCCGC+CGG | 0.539648 | 4.1:+11708826 | MS.gene47905:CDS |
| TGTTGAAGGTGGTGATGATG+AGG | 0.540375 | 4.1:+11709521 | MS.gene47905:CDS |
| GTCGGAGGGGTGACCGAGCA+TGG | 0.541540 | 4.1:-11708971 | None:intergenic |
| GTGAAGCCTCTGTAGTTGAA+TGG | 0.543870 | 4.1:+11709199 | MS.gene47905:CDS |
| TAGATTGATTTAACGTCGGA+GGG | 0.549674 | 4.1:-11708985 | None:intergenic |
| CGTCGGAGGAGTTAGCGAGA+TGG | 0.558276 | 4.1:-11708939 | None:intergenic |
| GTATGGTTGCTAATGGGGAT+GGG | 0.563707 | 4.1:+11709589 | MS.gene47905:CDS |
| ATGGGAAAAGCAACATACAT+GGG | 0.566603 | 4.1:+11709243 | MS.gene47905:CDS |
| TCCCTCTCTCTTCAATACCT+CGG | 0.574178 | 4.1:+11708892 | MS.gene47905:CDS |
| GGTATGGTTGCTAATGGGGA+TGG | 0.581616 | 4.1:+11709588 | MS.gene47905:CDS |
| TCGATGCTCCGGTATCCGGT+GGG | 0.582749 | 4.1:+11709133 | MS.gene47905:CDS |
| TTTCCCATTATTTCAAACAA+CGG | 0.582825 | 4.1:-11709228 | None:intergenic |
| TAGTGTTTGCAAAACGAAGT+GGG | 0.586049 | 4.1:+11709346 | MS.gene47905:CDS |
| AGCGGATTTAACTCGTGCTA+CGG | 0.586888 | 4.1:-11709103 | None:intergenic |
| GAATGGTGCAGCGGGGACGA+AGG | 0.592089 | 4.1:+11709401 | MS.gene47905:CDS |
| CATCCACGACCCGAATCGGA+TGG | 0.595417 | 4.1:+11708773 | MS.gene47905:CDS |
| GTAGATTGATTTAACGTCGG+AGG | 0.596473 | 4.1:-11708986 | None:intergenic |
| AATTTGATCGGACTTAGTGA+AGG | 0.602083 | 4.1:+11709321 | MS.gene47905:CDS |
| ACTATCGGAGCGAATTTGAT+CGG | 0.602735 | 4.1:+11709309 | MS.gene47905:CDS |
| GGGGATATCGGAGCAAGAGA+CGG | 0.602736 | 4.1:+11709153 | MS.gene47905:CDS |
| AAATAAGGATTTCAGGCCTG+GGG | 0.604446 | 4.1:+11709452 | MS.gene47905:CDS |
| GGTGTCTACAGTGACAGTGT+TGG | 0.605447 | 4.1:-11709043 | None:intergenic |
| GCCGAGGTATTGAAGAGAGA+GGG | 0.606244 | 4.1:-11708893 | None:intergenic |
| AAACTAGCAATCTTCGCCGC+CGG | 0.607107 | 4.1:+11709177 | MS.gene47905:CDS |
| ACGACCCGAATCGGATGGAT+CGG | 0.611681 | 4.1:+11708778 | MS.gene47905:CDS |
| GAGGAGTTAGCGAGATGGGA+AGG | 0.613168 | 4.1:-11708934 | None:intergenic |
| ATAGCGAATCAGATAACTAT+CGG | 0.617551 | 4.1:+11709294 | MS.gene47905:CDS |
| TGCTTAACCAAAGAAGCACC+AGG | 0.620317 | 4.1:-11709555 | None:intergenic |
| AATTTGCGAGTTTGGCGCCG+AGG | 0.625882 | 4.1:-11708909 | None:intergenic |
| CGCCGAGGTATTGAAGAGAG+AGG | 0.626412 | 4.1:-11708894 | None:intergenic |
| TGTCTACAGTGACAGTGTTG+GGG | 0.629152 | 4.1:-11709041 | None:intergenic |
| CGATGCTCCGGTATCCGGTG+GGG | 0.630682 | 4.1:+11709134 | MS.gene47905:CDS |
| AACTACAGAGGCTTCACCGG+CGG | 0.632581 | 4.1:-11709193 | None:intergenic |
| GGATTTAACTCGTGCTACGG+CGG | 0.633686 | 4.1:-11709100 | None:intergenic |
| TTAGTGTTTGCAAAACGAAG+TGG | 0.638669 | 4.1:+11709345 | MS.gene47905:CDS |
| TAGCACGAGTTAAATCCGCT+TGG | 0.644480 | 4.1:+11709106 | MS.gene47905:CDS |
| ATCGGAATCGGAGTGATGGG+CGG | 0.645915 | 4.1:+11708796 | MS.gene47905:CDS |
| TGGGAAAAGCAACATACATG+GGG | 0.646047 | 4.1:+11709244 | MS.gene47905:CDS |
| CGGAGCATCGATTGACCAAG+CGG | 0.652137 | 4.1:-11709121 | None:intergenic |
| TCTTGCTCCGATATCCCCAC+CGG | 0.654538 | 4.1:-11709148 | None:intergenic |
| GAGGTAGATTGATTTAACGT+CGG | 0.660666 | 4.1:-11708989 | None:intergenic |
| ACCGGCGGAGATGACGCGTG+AGG | 0.674463 | 4.1:-11708827 | None:intergenic |
| CATGGTGAAAACGACGTCGG+AGG | 0.675042 | 4.1:-11708953 | None:intergenic |
| AGATTGATTTAACGTCGGAG+GGG | 0.675762 | 4.1:-11708984 | None:intergenic |
| GAGATCTGGATGTGAGCTTG+TGG | 0.680246 | 4.1:-11709064 | None:intergenic |
| AATAAGGATTTCAGGCCTGG+GGG | 0.682914 | 4.1:+11709453 | MS.gene47905:CDS |
| CAATTAAGAATGGTGCAGCG+GGG | 0.738040 | 4.1:+11709394 | MS.gene47905:CDS |
| GAGCATGGTGAAAACGACGT+CGG | 0.746260 | 4.1:-11708956 | None:intergenic |
| GGGAAAAGCAACATACATGG+GGG | 0.753851 | 4.1:+11709245 | MS.gene47905:CDS |
| GAAGGTGAGAGTGTAACCGG+CGG | 0.761972 | 4.1:-11708842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCTGTTATTGATAGGATTAA+TGG | + | chr4.1:11709636-11709655 | MS.gene47905:CDS | 25.0% |
| ! | TTTCCCATTATTTCAAACAA+CGG | - | chr4.1:11709231-11709250 | None:intergenic | 25.0% |
| !! | AAAACCGTTGTTTGAAATAA+TGG | + | chr4.1:11709224-11709243 | MS.gene47905:CDS | 25.0% |
| !! | AAACCGTTGTTTGAAATAAT+GGG | + | chr4.1:11709225-11709244 | MS.gene47905:CDS | 25.0% |
| !! | TTTTTGGATGCAATTAAGAA+TGG | + | chr4.1:11709384-11709403 | MS.gene47905:CDS | 25.0% |
| !!! | GTGTTATTTCTGTTATTGAT+AGG | + | chr4.1:11709628-11709647 | MS.gene47905:CDS | 25.0% |
| ATAGCGAATCAGATAACTAT+CGG | + | chr4.1:11709294-11709313 | MS.gene47905:CDS | 30.0% | |
| CAAGTTAAGGATTTAGGAAT+GGG | + | chr4.1:11709489-11709508 | MS.gene47905:CDS | 30.0% | |
| GAGTATCAAGTTAAGGATTT+AGG | + | chr4.1:11709483-11709502 | MS.gene47905:CDS | 30.0% | |
| GGATGATAAATAAGGATTTC+AGG | + | chr4.1:11709445-11709464 | MS.gene47905:CDS | 30.0% | |
| TCAAGTTAAGGATTTAGGAA+TGG | + | chr4.1:11709488-11709507 | MS.gene47905:CDS | 30.0% | |
| TTATGCTGAGTATCAAGTTA+AGG | + | chr4.1:11709476-11709495 | MS.gene47905:CDS | 30.0% | |
| ! | ATGGGTGTTAATTTTGTTGA+AGG | + | chr4.1:11709507-11709526 | MS.gene47905:CDS | 30.0% |
| ! | TAAGCAGATTTTTACTGGTA+TGG | + | chr4.1:11709572-11709591 | MS.gene47905:CDS | 30.0% |
| ! | TTGGTTAAGCAGATTTTTAC+TGG | + | chr4.1:11709567-11709586 | MS.gene47905:CDS | 30.0% |
| AATGGGAAAAGCAACATACA+TGG | + | chr4.1:11709242-11709261 | MS.gene47905:CDS | 35.0% | |
| AATTTGATCGGACTTAGTGA+AGG | + | chr4.1:11709321-11709340 | MS.gene47905:CDS | 35.0% | |
| ATAAATAAGGATTTCAGGCC+TGG | + | chr4.1:11709450-11709469 | MS.gene47905:CDS | 35.0% | |
| ATGGGAAAAGCAACATACAT+GGG | + | chr4.1:11709243-11709262 | MS.gene47905:CDS | 35.0% | |
| ATTGAAGAGAGAGGGAATTT+GGG | - | chr4.1:11708888-11708907 | None:intergenic | 35.0% | |
| TAAATAAGGATTTCAGGCCT+GGG | + | chr4.1:11709451-11709470 | MS.gene47905:CDS | 35.0% | |
| TAGTGTTTGCAAAACGAAGT+GGG | + | chr4.1:11709346-11709365 | MS.gene47905:CDS | 35.0% | |
| TATTGAAGAGAGAGGGAATT+TGG | - | chr4.1:11708889-11708908 | None:intergenic | 35.0% | |
| TCAATCTACCTCGACAAAAA+CGG | + | chr4.1:11709000-11709019 | MS.gene47905:CDS | 35.0% | |
| TGGGAAGAGGATGATAAATA+AGG | + | chr4.1:11709437-11709456 | MS.gene47905:CDS | 35.0% | |
| TTACTGGTATGGTTGCTAAT+GGG | + | chr4.1:11709583-11709602 | MS.gene47905:CDS | 35.0% | |
| TTAGTGTTTGCAAAACGAAG+TGG | + | chr4.1:11709345-11709364 | MS.gene47905:CDS | 35.0% | |
| TTTACTGGTATGGTTGCTAA+TGG | + | chr4.1:11709582-11709601 | MS.gene47905:CDS | 35.0% | |
| ! | GAGGTAGATTGATTTAACGT+CGG | - | chr4.1:11708992-11709011 | None:intergenic | 35.0% |
| ! | GGTGTTAATTTTGTTGAAGG+TGG | + | chr4.1:11709510-11709529 | MS.gene47905:CDS | 35.0% |
| ! | TAGATTGATTTAACGTCGGA+GGG | - | chr4.1:11708988-11709007 | None:intergenic | 35.0% |
| ! | TTTTAGCCATTCAACTACAG+AGG | - | chr4.1:11709208-11709227 | None:intergenic | 35.0% |
| AAATAAGGATTTCAGGCCTG+GGG | + | chr4.1:11709452-11709471 | MS.gene47905:CDS | 40.0% | |
| ACTATCGGAGCGAATTTGAT+CGG | + | chr4.1:11709309-11709328 | MS.gene47905:CDS | 40.0% | |
| CATTGGAGTTATTTGGGAAG+AGG | + | chr4.1:11709424-11709443 | MS.gene47905:CDS | 40.0% | |
| GAGATTTCTTTAGCGAGATC+TGG | - | chr4.1:11709081-11709100 | None:intergenic | 40.0% | |
| TACTGGTATGGTTGCTAATG+GGG | + | chr4.1:11709584-11709603 | MS.gene47905:CDS | 40.0% | |
| TGCAATTAAGAATGGTGCAG+CGG | + | chr4.1:11709392-11709411 | MS.gene47905:CDS | 40.0% | |
| TGGGAAAAGCAACATACATG+GGG | + | chr4.1:11709244-11709263 | MS.gene47905:CDS | 40.0% | |
| ! | AGATTGATTTAACGTCGGAG+GGG | - | chr4.1:11708987-11709006 | None:intergenic | 40.0% |
| ! | GTAGATTGATTTAACGTCGG+AGG | - | chr4.1:11708989-11709008 | None:intergenic | 40.0% |
| !! | ACGAAGGCATTGGAGTTATT+TGG | + | chr4.1:11709417-11709436 | MS.gene47905:CDS | 40.0% |
| !! | CGAAGGCATTGGAGTTATTT+GGG | + | chr4.1:11709418-11709437 | MS.gene47905:CDS | 40.0% |
| !!! | AAACAATGCCGTTTTTGTCG+AGG | - | chr4.1:11709011-11709030 | None:intergenic | 40.0% |
| !!! | GCTTGACTTGGAGCAATTTT+TGG | + | chr4.1:11709368-11709387 | MS.gene47905:CDS | 40.0% |
| AATAAGGATTTCAGGCCTGG+GGG | + | chr4.1:11709453-11709472 | MS.gene47905:CDS | 45.0% | |
| AGAGGGAATTTGGGTGAGAT+GGG | - | chr4.1:11708879-11708898 | None:intergenic | 45.0% | |
| CAATTAAGAATGGTGCAGCG+GGG | + | chr4.1:11709394-11709413 | MS.gene47905:CDS | 45.0% | |
| GCAATTAAGAATGGTGCAGC+GGG | + | chr4.1:11709393-11709412 | MS.gene47905:CDS | 45.0% | |
| GGAAGGTGAATTTGCGAGTT+TGG | - | chr4.1:11708920-11708939 | None:intergenic | 45.0% | |
| GGGAAAAGCAACATACATGG+GGG | + | chr4.1:11709245-11709264 | MS.gene47905:CDS | 45.0% | |
| GTATGGTTGCTAATGGGGAT+GGG | + | chr4.1:11709589-11709608 | MS.gene47905:CDS | 45.0% | |
| GTGAAGCCTCTGTAGTTGAA+TGG | + | chr4.1:11709199-11709218 | MS.gene47905:CDS | 45.0% | |
| GTGTCTACAGTGACAGTGTT+GGG | - | chr4.1:11709045-11709064 | None:intergenic | 45.0% | |
| TAGCACGAGTTAAATCCGCT+TGG | + | chr4.1:11709106-11709125 | MS.gene47905:CDS | 45.0% | |
| TCCCTCTCTCTTCAATACCT+CGG | + | chr4.1:11708892-11708911 | MS.gene47905:CDS | 45.0% | |
| TGTCTACAGTGACAGTGTTG+GGG | - | chr4.1:11709044-11709063 | None:intergenic | 45.0% | |
| TTCAACTACAGAGGCTTCAC+CGG | - | chr4.1:11709199-11709218 | None:intergenic | 45.0% | |
| ! | AAAACGAAGTGGGCTTGACT+TGG | + | chr4.1:11709356-11709375 | MS.gene47905:CDS | 45.0% |
| ! | AGCGGATTTAACTCGTGCTA+CGG | - | chr4.1:11709106-11709125 | None:intergenic | 45.0% |
| ! | GTAGAAGGTGAGAGTGTAAC+CGG | - | chr4.1:11708848-11708867 | None:intergenic | 45.0% |
| ! | TGTTGAAGGTGGTGATGATG+AGG | + | chr4.1:11709521-11709540 | MS.gene47905:CDS | 45.0% |
| ! | TGTTTTGCCTGGTGCTTCTT+TGG | + | chr4.1:11709548-11709567 | MS.gene47905:CDS | 45.0% |
| !! | TGCTTAACCAAAGAAGCACC+AGG | - | chr4.1:11709558-11709577 | None:intergenic | 45.0% |
| !!! | GATGAGGTTGTTGTTTTGCC+TGG | + | chr4.1:11709537-11709556 | MS.gene47905:CDS | 45.0% |
| AAACTAGCAATCTTCGCCGC+CGG | + | chr4.1:11709177-11709196 | MS.gene47905:CDS | 50.0% | |
| ATGGATCGGAATCGGAGTGA+TGG | + | chr4.1:11708792-11708811 | MS.gene47905:CDS | 50.0% | |
| CGAATCGGATGGATCGGAAT+CGG | + | chr4.1:11708784-11708803 | MS.gene47905:CDS | 50.0% | |
| CGATTCCGATCCATCCGATT+CGG | - | chr4.1:11708786-11708805 | None:intergenic | 50.0% | |
| GAGAGGGAATTTGGGTGAGA+TGG | - | chr4.1:11708880-11708899 | None:intergenic | 50.0% | |
| GAGATCTGGATGTGAGCTTG+TGG | - | chr4.1:11709067-11709086 | None:intergenic | 50.0% | |
| GAGCATGGTGAAAACGACGT+CGG | - | chr4.1:11708959-11708978 | None:intergenic | 50.0% | |
| GATTCCGATCCATCCGATTC+GGG | - | chr4.1:11708785-11708804 | None:intergenic | 50.0% | |
| GGATTTAACTCGTGCTACGG+CGG | - | chr4.1:11709103-11709122 | None:intergenic | 50.0% | |
| GGTATGGTTGCTAATGGGGA+TGG | + | chr4.1:11709588-11709607 | MS.gene47905:CDS | 50.0% | |
| GGTGTCTACAGTGACAGTGT+TGG | - | chr4.1:11709046-11709065 | None:intergenic | 50.0% | |
| TCAATCGATGCTCCGGTATC+CGG | + | chr4.1:11709129-11709148 | MS.gene47905:CDS | 50.0% | |
| TGATACTCAGCATAACCCCC+AGG | - | chr4.1:11709471-11709490 | None:intergenic | 50.0% | |
| TGGATCGGAATCGGAGTGAT+GGG | + | chr4.1:11708793-11708812 | MS.gene47905:CDS | 50.0% | |
| TGGATGCGGTGATTGGGTTT+GGG | - | chr4.1:11708759-11708778 | None:intergenic | 50.0% | |
| !! | GACGTCGTTTTCACCATGCT+CGG | + | chr4.1:11708958-11708977 | MS.gene47905:CDS | 50.0% |
| !! | GCCGAGGTATTGAAGAGAGA+GGG | - | chr4.1:11708896-11708915 | None:intergenic | 50.0% |
| AACTACAGAGGCTTCACCGG+CGG | - | chr4.1:11709196-11709215 | None:intergenic | 55.0% | |
| AATGGGGATGGGAAGCTTGG+TGG | + | chr4.1:11709600-11709619 | MS.gene47905:CDS | 55.0% | |
| AATTTGCGAGTTTGGCGCCG+AGG | - | chr4.1:11708912-11708931 | None:intergenic | 55.0% | |
| ACGACCCGAATCGGATGGAT+CGG | + | chr4.1:11708778-11708797 | MS.gene47905:CDS | 55.0% | |
| CATGGTGAAAACGACGTCGG+AGG | - | chr4.1:11708956-11708975 | None:intergenic | 55.0% | |
| CGCTTGGTCAATCGATGCTC+CGG | + | chr4.1:11709122-11709141 | MS.gene47905:CDS | 55.0% | |
| GAGGAGTTAGCGAGATGGGA+AGG | - | chr4.1:11708937-11708956 | None:intergenic | 55.0% | |
| GCAACATACATGGGGGCTAG+TGG | + | chr4.1:11709252-11709271 | MS.gene47905:CDS | 55.0% | |
| GCTAATGGGGATGGGAAGCT+TGG | + | chr4.1:11709597-11709616 | MS.gene47905:CDS | 55.0% | |
| GGGGATATCGGAGCAAGAGA+CGG | + | chr4.1:11709153-11709172 | MS.gene47905:CDS | 55.0% | |
| GTCGGAGGAGTTAGCGAGAT+GGG | - | chr4.1:11708941-11708960 | None:intergenic | 55.0% | |
| GTGGATGCGGTGATTGGGTT+TGG | - | chr4.1:11708760-11708779 | None:intergenic | 55.0% | |
| TCTTGCTCCGATATCCCCAC+CGG | - | chr4.1:11709151-11709170 | None:intergenic | 55.0% | |
| ! | ATCGGAATCGGAGTGATGGG+CGG | + | chr4.1:11708796-11708815 | MS.gene47905:CDS | 55.0% |
| ! | GAAGGTGAGAGTGTAACCGG+CGG | - | chr4.1:11708845-11708864 | None:intergenic | 55.0% |
| ! | GATGGGAAGCTTGGTGGTCA+AGG | + | chr4.1:11709606-11709625 | MS.gene47905:CDS | 55.0% |
| ! | TACATGGGGGCTAGTGGATG+TGG | + | chr4.1:11709258-11709277 | MS.gene47905:CDS | 55.0% |
| !! | AGATGGGTTGCGAGCGTAGA+AGG | - | chr4.1:11708863-11708882 | None:intergenic | 55.0% |
| !! | CGCCGAGGTATTGAAGAGAG+AGG | - | chr4.1:11708897-11708916 | None:intergenic | 55.0% |
| !! | CGGAGCATCGATTGACCAAG+CGG | - | chr4.1:11709124-11709143 | None:intergenic | 55.0% |
| ACCGCATCCACGACCCGAAT+CGG | + | chr4.1:11708769-11708788 | MS.gene47905:CDS | 60.0% | |
| ATCGATGCTCCGGTATCCGG+TGG | + | chr4.1:11709132-11709151 | MS.gene47905:CDS | 60.0% | |
| CATCCACGACCCGAATCGGA+TGG | + | chr4.1:11708773-11708792 | MS.gene47905:CDS | 60.0% | |
| CCGATATCCCCACCGGATAC+CGG | - | chr4.1:11709144-11709163 | None:intergenic | 60.0% | |
| CCGGTATCCGGTGGGGATAT+CGG | + | chr4.1:11709141-11709160 | MS.gene47905:CDS | 60.0% | |
| CGTCGGAGGAGTTAGCGAGA+TGG | - | chr4.1:11708942-11708961 | None:intergenic | 60.0% | |
| GGGTCGTGGATGCGGTGATT+GGG | - | chr4.1:11708765-11708784 | None:intergenic | 60.0% | |
| TCGATGCTCCGGTATCCGGT+GGG | + | chr4.1:11709133-11709152 | MS.gene47905:CDS | 60.0% | |
| !! | GATCCATCCGATTCGGGTCG+TGG | - | chr4.1:11708779-11708798 | None:intergenic | 60.0% |
| !! | TCCGATTCGGGTCGTGGATG+CGG | - | chr4.1:11708773-11708792 | None:intergenic | 60.0% |
| CGATGCTCCGGTATCCGGTG+GGG | + | chr4.1:11709134-11709153 | MS.gene47905:CDS | 65.0% | |
| CGGGTCGTGGATGCGGTGAT+TGG | - | chr4.1:11708766-11708785 | None:intergenic | 65.0% | |
| GAATGGTGCAGCGGGGACGA+AGG | + | chr4.1:11709401-11709420 | MS.gene47905:CDS | 65.0% | |
| ! | TGCAGCGGGGACGAAGGCAT+TGG | + | chr4.1:11709407-11709426 | MS.gene47905:CDS | 65.0% |
| ACCGGCGGAGATGACGCGTG+AGG | - | chr4.1:11708830-11708849 | None:intergenic | 70.0% | |
| GCCTCACGCGTCATCTCCGC+CGG | + | chr4.1:11708826-11708845 | MS.gene47905:CDS | 70.0% | |
| GTCGGAGGGGTGACCGAGCA+TGG | - | chr4.1:11708974-11708993 | None:intergenic | 70.0% | |
| !! | CGGAGTGATGGGCGGCGCAA+TGG | + | chr4.1:11708804-11708823 | MS.gene47905:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11708742 | 11709665 | 11708742 | ID=MS.gene47905 |
| chr4.1 | mRNA | 11708742 | 11709665 | 11708742 | ID=MS.gene47905.t1;Parent=MS.gene47905 |
| chr4.1 | exon | 11708742 | 11709665 | 11708742 | ID=MS.gene47905.t1.exon1;Parent=MS.gene47905.t1 |
| chr4.1 | CDS | 11708742 | 11709665 | 11708742 | ID=cds.MS.gene47905.t1;Parent=MS.gene47905.t1 |
| Gene Sequence |
| Protein sequence |
