Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003895.t1 | RHN61142.1 | 90.8 | 381 | 31 | 1 | 1 | 377 | 27 | 407 | 2.70E-172 | 614.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003895.t1 | Q9SIC4 | 66.2 | 296 | 92 | 2 | 81 | 376 | 91 | 378 | 1.7e-109 | 397.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003895.t1 | A0A072UMM8 | 90.8 | 381 | 31 | 1 | 1 | 377 | 1 | 381 | 2.0e-172 | 614.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene73789 | MS.gene003895 | PPI |
| MS.gene003895 | MS.gene46509 | PPI |
| MS.gene003895 | MS.gene49595 | PPI |
| MS.gene013797 | MS.gene003895 | PPI |
| MS.gene032779 | MS.gene003895 | PPI |
| MS.gene066288 | MS.gene003895 | PPI |
| MS.gene02580 | MS.gene003895 | PPI |
| MS.gene54568 | MS.gene003895 | PPI |
| MS.gene003895 | MS.gene28350 | PPI |
| MS.gene99026 | MS.gene003895 | PPI |
| MS.gene03207 | MS.gene003895 | PPI |
| MS.gene28350 | MS.gene003895 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003895.t1 | MTR_4g067060 | 93.176 | 381 | 22 | 1 | 1 | 377 | 1 | 381 | 0.0 | 724 |
| MS.gene003895.t1 | MTR_2g098660 | 60.952 | 315 | 91 | 3 | 44 | 358 | 29 | 311 | 7.74e-130 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003895.t1 | AT2G31450 | 61.329 | 331 | 103 | 4 | 35 | 358 | 48 | 360 | 1.04e-140 | 405 |
| MS.gene003895.t1 | AT2G31450 | 60.909 | 330 | 104 | 4 | 36 | 358 | 51 | 362 | 6.18e-139 | 400 |
| MS.gene003895.t1 | AT1G05900 | 57.273 | 330 | 127 | 5 | 36 | 358 | 47 | 369 | 2.31e-129 | 377 |
| MS.gene003895.t1 | AT1G05900 | 60.268 | 224 | 81 | 2 | 86 | 303 | 93 | 314 | 1.50e-93 | 283 |
Find 96 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCCAGACTTGGTGGATT+TGG | 0.159413 | 4.4:-39502615 | None:intergenic |
| CATACCAATAGAGGATTAAT+TGG | 0.189975 | 4.4:-39502295 | None:intergenic |
| GGAAGCTGAAGCGCCGGATT+TGG | 0.215287 | 4.4:-39498006 | None:intergenic |
| GAAGCTGAAGCGCCGGATTT+GGG | 0.221690 | 4.4:-39498005 | None:intergenic |
| CTTCCAGACTTGGTGGATTT+GGG | 0.227785 | 4.4:-39502614 | None:intergenic |
| GTCGTCTCCTTGGTTTGTTT+TGG | 0.239443 | 4.4:+39497905 | MS.gene003895:CDS |
| TATGCAAAGTCTTCAATTTC+AGG | 0.246614 | 4.4:-39498397 | None:intergenic |
| ATTGAAGACTTTGCATATAA+AGG | 0.268285 | 4.4:+39498403 | MS.gene003895:CDS |
| GACTTGGTGGATTTGGGAAC+TGG | 0.269436 | 4.4:-39502608 | None:intergenic |
| GAATATCAACAGGTTGGATT+TGG | 0.297080 | 4.4:+39502491 | MS.gene003895:intron |
| CTTCTTGTTCCTTCCAGACT+TGG | 0.315451 | 4.4:-39502624 | None:intergenic |
| GATTGATATGATCCTTGGTT+TGG | 0.364085 | 4.4:-39500134 | None:intergenic |
| CATACCAAATGAGCCATCTT+AGG | 0.370853 | 4.4:-39500960 | None:intergenic |
| TCTCCACAGCGAGGTCTTAG+AGG | 0.373498 | 4.4:-39502530 | None:intergenic |
| CTCGGTTGGGTGTCAAGATT+GGG | 0.380820 | 4.4:+39501135 | MS.gene003895:CDS |
| GCTCGGTTGGGTGTCAAGAT+TGG | 0.388498 | 4.4:+39501134 | MS.gene003895:CDS |
| ATTCGCAAAATGAGGTGTTC+TGG | 0.390605 | 4.4:+39499652 | MS.gene003895:CDS |
| AGTGACACTCTTGTCTCTTC+AGG | 0.393822 | 4.4:-39502241 | None:intergenic |
| TCCTTCCCTCGTCGTCTCCT+TGG | 0.394923 | 4.4:+39497895 | MS.gene003895:CDS |
| GTCAAGATTGGGCACGAAAC+AGG | 0.402226 | 4.4:+39501146 | MS.gene003895:CDS |
| GGATCCAATTAATCCTCTAT+TGG | 0.402662 | 4.4:+39502291 | MS.gene003895:CDS |
| CTTGTGTCCATCCGCGTTCA+AGG | 0.402709 | 4.4:+39502568 | MS.gene003895:CDS |
| CTTGTTCCTTCCAGACTTGG+TGG | 0.406554 | 4.4:-39502621 | None:intergenic |
| ACCATGATTGATATGATCCT+TGG | 0.409171 | 4.4:-39500139 | None:intergenic |
| AGGTCCTAAGATGGCTCATT+TGG | 0.410810 | 4.4:+39500956 | MS.gene003895:CDS |
| TCAGCATTGTTAATTGCATC+AGG | 0.415747 | 4.4:-39500585 | None:intergenic |
| CTTCGGACGTAGACATGAAC+TGG | 0.419195 | 4.4:-39498032 | None:intergenic |
| GTTCCCAAATCCACCAAGTC+TGG | 0.420070 | 4.4:+39502611 | MS.gene003895:CDS |
| ACTTTATGAGTCTGTGTTGA+AGG | 0.425998 | 4.4:-39498116 | None:intergenic |
| AGATGCACCAGTGGACACTA+TGG | 0.426856 | 4.4:+39499675 | MS.gene003895:CDS |
| GCATCTGCAATCGGCTCGGT+TGG | 0.427174 | 4.4:+39501121 | MS.gene003895:CDS |
| ACTTGGTGGATTTGGGAACT+GGG | 0.429229 | 4.4:-39502607 | None:intergenic |
| ATATAAAGGATCAAATGAAT+TGG | 0.433517 | 4.4:+39498417 | MS.gene003895:CDS |
| ATTGGATCCCATTCTTCCCT+TGG | 0.438799 | 4.4:-39502277 | None:intergenic |
| GAGCAACTACTACAACTTCC+AGG | 0.441588 | 4.4:+39500930 | MS.gene003895:CDS |
| AATATTTGTCTCATGAAGTA+TGG | 0.442213 | 4.4:+39500885 | MS.gene003895:CDS |
| CACTGCAATTGTGGCTTCCA+AGG | 0.443592 | 4.4:+39502260 | MS.gene003895:CDS |
| TGTGGCTTCCAAGGGAAGAA+TGG | 0.449796 | 4.4:+39502269 | MS.gene003895:CDS |
| GGTAGTGGTGGTGATTCCTT+TGG | 0.463377 | 4.4:-39498066 | None:intergenic |
| TGAGTTTACCATACCAATAG+AGG | 0.473658 | 4.4:-39502304 | None:intergenic |
| TGGTTCTACGCTACCTCCTA+AGG | 0.476967 | 4.4:+39499711 | MS.gene003895:CDS |
| TCCGACTCCGACCCCAAATC+CGG | 0.477207 | 4.4:+39497993 | MS.gene003895:CDS |
| CATCTGCAATCGGCTCGGTT+GGG | 0.481915 | 4.4:+39501122 | MS.gene003895:CDS |
| CGCTGGGAAGAGACGCTTGA+GGG | 0.484720 | 4.4:+39499628 | MS.gene003895:CDS |
| GTGGCTTCCAAGGGAAGAAT+GGG | 0.487229 | 4.4:+39502270 | MS.gene003895:CDS |
| GTCGGAGTCGGAGAGTTTGA+TGG | 0.489580 | 4.4:-39497982 | None:intergenic |
| AGTTAAATCACCTGCACGCT+GGG | 0.490042 | 4.4:+39499612 | MS.gene003895:intron |
| GCGGCTTCCTTGAACGCGGA+TGG | 0.496718 | 4.4:-39502575 | None:intergenic |
| GACGTAGACATGAACTGGTT+GGG | 0.499633 | 4.4:-39498027 | None:intergenic |
| AGCGTCTCTTCCCAGCGTGC+AGG | 0.503259 | 4.4:-39499622 | None:intergenic |
| ACCAAGGATCATATCAATCA+TGG | 0.504759 | 4.4:+39500138 | MS.gene003895:CDS |
| ACCAAGGAGACGACGAGGGA+AGG | 0.507812 | 4.4:-39497896 | None:intergenic |
| GGAAAGAAGATTTGCTGTCC+TGG | 0.508321 | 4.4:+39500092 | MS.gene003895:intron |
| GGACGTAGACATGAACTGGT+TGG | 0.514912 | 4.4:-39498028 | None:intergenic |
| CAAGAGTGTCACTGCAATTG+TGG | 0.515306 | 4.4:+39502251 | MS.gene003895:CDS |
| GCCGGATTTGGGGTCGGAGT+CGG | 0.519560 | 4.4:-39497994 | None:intergenic |
| GAAGCCACTTCACTTTCAGT+TGG | 0.521194 | 4.4:-39498652 | None:intergenic |
| CACCGCATCTGCAATCGGCT+CGG | 0.525408 | 4.4:+39501117 | MS.gene003895:CDS |
| GTCGGAGAGTTTGATGGAAG+CGG | 0.534044 | 4.4:-39497976 | None:intergenic |
| ATGTCCACCGCATCTGCAAT+CGG | 0.535195 | 4.4:+39501112 | MS.gene003895:CDS |
| AACCGAGCCGATTGCAGATG+CGG | 0.540125 | 4.4:-39501119 | None:intergenic |
| TAGTTAAATCACCTGCACGC+TGG | 0.549770 | 4.4:+39499611 | MS.gene003895:intron |
| TCCAGGCATAGGTCCTAAGA+TGG | 0.552749 | 4.4:+39500947 | MS.gene003895:CDS |
| GCCATCTTAGGACCTATGCC+TGG | 0.556487 | 4.4:-39500948 | None:intergenic |
| TCACATCCCATAGTGTCCAC+TGG | 0.558188 | 4.4:-39499682 | None:intergenic |
| AAGCTGAAGCGCCGGATTTG+GGG | 0.575203 | 4.4:-39498004 | None:intergenic |
| TCCGCGTTCAAGGAAGCCGC+AGG | 0.576159 | 4.4:+39502578 | MS.gene003895:CDS |
| AATAGGTTATGAATGTTGCA+TGG | 0.580611 | 4.4:+39501058 | MS.gene003895:intron |
| CCAAATCCACCAAGTCTGGA+AGG | 0.584547 | 4.4:+39502615 | MS.gene003895:CDS |
| TTGAGGGTATTCGCAAAATG+AGG | 0.585116 | 4.4:+39499644 | MS.gene003895:CDS |
| TTGATAAAAGAGAAGATACC+AGG | 0.586566 | 4.4:-39500110 | None:intergenic |
| GGGAACTGGGCTTGTACCTG+CGG | 0.587952 | 4.4:-39502594 | None:intergenic |
| ACTGCAATTGTGGCTTCCAA+GGG | 0.592814 | 4.4:+39502261 | MS.gene003895:CDS |
| GAGTATCTACACATATCCCT+TGG | 0.595774 | 4.4:-39501089 | None:intergenic |
| GTTGCATGGAACAATGTCCA+AGG | 0.599309 | 4.4:+39501072 | MS.gene003895:CDS |
| CTACTACAACTTCCAGGCAT+AGG | 0.599409 | 4.4:+39500936 | MS.gene003895:CDS |
| GTGGCTTCTACCACACATAG+TGG | 0.602671 | 4.4:+39498667 | MS.gene003895:CDS |
| GATTCCAACTGAAAGTGAAG+TGG | 0.605901 | 4.4:+39498648 | MS.gene003895:CDS |
| ATACAGGGTCAAACCTTAGG+AGG | 0.609377 | 4.4:-39499724 | None:intergenic |
| AACAAACCAAGGAGACGACG+AGG | 0.611827 | 4.4:-39497901 | None:intergenic |
| TGGTTGGGAAGCTGAAGCGC+CGG | 0.612062 | 4.4:-39498012 | None:intergenic |
| CGAGCCGATTGCAGATGCGG+TGG | 0.617927 | 4.4:-39501116 | None:intergenic |
| ATTTGTCTCATGAAGTATGG+TGG | 0.625018 | 4.4:+39500888 | MS.gene003895:CDS |
| TGAAGCGCCGGATTTGGGGT+CGG | 0.626915 | 4.4:-39498000 | None:intergenic |
| TGATGCAATTAACAATGCTG+AGG | 0.635618 | 4.4:+39500587 | MS.gene003895:CDS |
| ACTATGGGATGTGAGAAAGC+TGG | 0.636572 | 4.4:+39499691 | MS.gene003895:CDS |
| CAACTTCCCAAAACAAACCA+AGG | 0.641374 | 4.4:-39497912 | None:intergenic |
| GATGCACCAGTGGACACTAT+GGG | 0.645959 | 4.4:+39499676 | MS.gene003895:CDS |
| ACCTGCGGCTTCCTTGAACG+CGG | 0.653221 | 4.4:-39502579 | None:intergenic |
| TTACTACTTACCACTATGTG+TGG | 0.653730 | 4.4:-39498677 | None:intergenic |
| ACAAACCAAGGAGACGACGA+GGG | 0.655970 | 4.4:-39497900 | None:intergenic |
| TTGCATGGAACAATGTCCAA+GGG | 0.659236 | 4.4:+39501073 | MS.gene003895:CDS |
| GTGTTCTGGAGATGCACCAG+TGG | 0.660918 | 4.4:+39499666 | MS.gene003895:CDS |
| ACGCTGGGAAGAGACGCTTG+AGG | 0.696005 | 4.4:+39499627 | MS.gene003895:CDS |
| ACACCTCTAAGACCTCGCTG+TGG | 0.758067 | 4.4:+39502527 | MS.gene003895:CDS |
| ATACTACATTCTCCACAGCG+AGG | 0.775449 | 4.4:-39502539 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTTCAAATTTAATAAAT+CGG | + | chr4.4:39501771-39501790 | MS.gene003895:intron | 10.0% |
| !! | TTTATTATAAAAACACAAAT+GGG | - | chr4.4:39498271-39498290 | None:intergenic | 10.0% |
| !! | CTTTATTATAAAAACACAAA+TGG | - | chr4.4:39498272-39498291 | None:intergenic | 15.0% |
| !! | TATATACTAAAAACTTTAGA+AGG | - | chr4.4:39500176-39500195 | None:intergenic | 15.0% |
| !! | TGGATAATAATTTAAGAAAA+TGG | - | chr4.4:39502085-39502104 | None:intergenic | 15.0% |
| !!! | AAATGTGTTTTTATGAATAT+AGG | + | chr4.4:39500525-39500544 | MS.gene003895:intron | 15.0% |
| !!! | AAATTAGTCTTATGTTAATA+TGG | - | chr4.4:39499506-39499525 | None:intergenic | 15.0% |
| !!! | AACATAATCAAATTCTAAAA+AGG | + | chr4.4:39499280-39499299 | MS.gene003895:intron | 15.0% |
| !!! | AATGTGTTTTTATGAATATA+GGG | + | chr4.4:39500526-39500545 | MS.gene003895:intron | 15.0% |
| !!! | ACATAATCAAATTCTAAAAA+GGG | + | chr4.4:39499281-39499300 | MS.gene003895:intron | 15.0% |
| !!! | ATAATACTTGTTAAATTTTC+TGG | + | chr4.4:39500193-39500212 | MS.gene003895:intron | 15.0% |
| !!! | TAATACTTTTAAAAGAAACA+GGG | - | chr4.4:39500649-39500668 | None:intergenic | 15.0% |
| !!! | TTAATTTGATATTTCAGTTT+GGG | + | chr4.4:39499757-39499776 | MS.gene003895:intron | 15.0% |
| !!! | TTCTTTTAAAAGTATTACAT+TGG | + | chr4.4:39500652-39500671 | MS.gene003895:intron | 15.0% |
| !! | AATTGTTAATCAAGAAACTT+GGG | + | chr4.4:39499164-39499183 | MS.gene003895:intron | 20.0% |
| !! | ATATAAAGGATCAAATGAAT+TGG | + | chr4.4:39498417-39498436 | MS.gene003895:CDS | 20.0% |
| !! | CAGATAGTTAAAACTTAAAA+GGG | + | chr4.4:39500287-39500306 | MS.gene003895:intron | 20.0% |
| !! | GTACTAAAATATATACACAA+AGG | - | chr4.4:39499358-39499377 | None:intergenic | 20.0% |
| !! | TAATCTTGTATTGAATTGAT+TGG | + | chr4.4:39499978-39499997 | MS.gene003895:intron | 20.0% |
| !! | TAATTGTTAATCAAGAAACT+TGG | + | chr4.4:39499163-39499182 | MS.gene003895:intron | 20.0% |
| !! | TAATTTGATATTTCAGTTTG+GGG | + | chr4.4:39499758-39499777 | MS.gene003895:intron | 20.0% |
| !! | TAGTTAACTTATTTAACGAA+CGG | + | chr4.4:39500409-39500428 | MS.gene003895:intron | 20.0% |
| !!! | AACACAAGAAATTTTCAATT+TGG | + | chr4.4:39502413-39502432 | MS.gene003895:intron | 20.0% |
| !!! | AATTAACAGAAGTATAATAC+AGG | - | chr4.4:39499743-39499762 | None:intergenic | 20.0% |
| !!! | ATGTGTTTTTATGAATATAG+GGG | + | chr4.4:39500527-39500546 | MS.gene003895:intron | 20.0% |
| !!! | ATTAACAGAAGTATAATACA+GGG | - | chr4.4:39499742-39499761 | None:intergenic | 20.0% |
| !!! | ATTGCTTCTTTGTTTTTAAT+GGG | + | chr4.4:39498155-39498174 | MS.gene003895:intron | 20.0% |
| !!! | ATTTAGGAAGTTTAAAATCA+TGG | + | chr4.4:39498233-39498252 | MS.gene003895:intron | 20.0% |
| !!! | GTAATACTTTTAAAAGAAAC+AGG | - | chr4.4:39500650-39500669 | None:intergenic | 20.0% |
| !!! | GTTAATTTGATATTTCAGTT+TGG | + | chr4.4:39499756-39499775 | MS.gene003895:intron | 20.0% |
| !!! | TTATTGTGTCAATTCTTTTA+AGG | + | chr4.4:39500749-39500768 | MS.gene003895:intron | 20.0% |
| !!! | TTATTTGTTGATTTATGTCT+TGG | + | chr4.4:39499794-39499813 | MS.gene003895:intron | 20.0% |
| !!! | TTTTCTCAATCTTTCTATTT+AGG | + | chr4.4:39498217-39498236 | MS.gene003895:intron | 20.0% |
| ! | AAAATTGCACAGGTTAAATT+TGG | - | chr4.4:39502334-39502353 | None:intergenic | 25.0% |
| ! | AAGTAGTAAATAGTTGCAAA+AGG | + | chr4.4:39498691-39498710 | MS.gene003895:intron | 25.0% |
| ! | AATAATTAATGTAGCAAAGC+AGG | + | chr4.4:39499188-39499207 | MS.gene003895:intron | 25.0% |
| ! | AATATTTGTCTCATGAAGTA+TGG | + | chr4.4:39500885-39500904 | MS.gene003895:CDS | 25.0% |
| ! | AGTAGTAAATAGTTGCAAAA+GGG | + | chr4.4:39498692-39498711 | MS.gene003895:intron | 25.0% |
| ! | ATATAAGAGTAAAATTGCAC+AGG | - | chr4.4:39502344-39502363 | None:intergenic | 25.0% |
| ! | ATATATACACAAAGGAAAGA+TGG | - | chr4.4:39499350-39499369 | None:intergenic | 25.0% |
| ! | ATGAAAAACACCTAAAACAA+TGG | - | chr4.4:39499103-39499122 | None:intergenic | 25.0% |
| ! | ATTGAAGACTTTGCATATAA+AGG | + | chr4.4:39498403-39498422 | MS.gene003895:CDS | 25.0% |
| ! | CACATACTTCAAAAGTAAAA+TGG | - | chr4.4:39500442-39500461 | None:intergenic | 25.0% |
| ! | CCAGATAGTTAAAACTTAAA+AGG | + | chr4.4:39500286-39500305 | MS.gene003895:intron | 25.0% |
| ! | GCATTATATAATACCAAAAG+AGG | - | chr4.4:39499138-39499157 | None:intergenic | 25.0% |
| ! | GCTAAACTACAATCTTAATA+TGG | - | chr4.4:39501461-39501480 | None:intergenic | 25.0% |
| ! | TAAAATGTAACCAAATGTGT+AGG | - | chr4.4:39502056-39502075 | None:intergenic | 25.0% |
| ! | TATATCTGTTGAATATCAAC+AGG | + | chr4.4:39502481-39502500 | MS.gene003895:intron | 25.0% |
| ! | TCAAAGAAGAAAAAGAATAC+TGG | + | chr4.4:39500315-39500334 | MS.gene003895:intron | 25.0% |
| ! | TTTCCTCTATTAATCTTGAT+CGG | + | chr4.4:39501741-39501760 | MS.gene003895:intron | 25.0% |
| !! | ATACTTTTATAAGATCGACA+AGG | - | chr4.4:39498590-39498609 | None:intergenic | 25.0% |
| !! | GATAACAGAAAATAATTTGC+AGG | - | chr4.4:39501306-39501325 | None:intergenic | 25.0% |
| !! | TACTTTTATAAGATCGACAA+GGG | - | chr4.4:39498589-39498608 | None:intergenic | 25.0% |
| !! | TTGATTTTGTTGAAGTTTTG+TGG | - | chr4.4:39498090-39498109 | None:intergenic | 25.0% |
| !! | TTTGAGTGATTTTCAAACAT+TGG | - | chr4.4:39498766-39498785 | None:intergenic | 25.0% |
| !!! | AAATGTATCCATTTTGTTTG+TGG | + | chr4.4:39501329-39501348 | MS.gene003895:intron | 25.0% |
| !!! | ATAACATGGGAATTTTGATA+AGG | - | chr4.4:39500070-39500089 | None:intergenic | 25.0% |
| !!! | CATTGCTTCTTTGTTTTTAA+TGG | + | chr4.4:39498154-39498173 | MS.gene003895:intron | 25.0% |
| !!! | CATTTTTTTTTGGGTTGATT+TGG | + | chr4.4:39501367-39501386 | MS.gene003895:intron | 25.0% |
| !!! | CCTTTTAAGTTTTAACTATC+TGG | - | chr4.4:39500289-39500308 | None:intergenic | 25.0% |
| !!! | TATGTGTTTTTGTAGAAGTT+TGG | + | chr4.4:39498370-39498389 | MS.gene003895:intron | 25.0% |
| !!! | TCATCATGGCATTTTTTTTT+GGG | + | chr4.4:39501358-39501377 | MS.gene003895:intron | 25.0% |
| !!! | TGCAATTTTTTTCAAGTTAG+TGG | - | chr4.4:39500865-39500884 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTGCTTTATAACT+TGG | + | chr4.4:39502134-39502153 | MS.gene003895:intron | 25.0% |
| !!! | TTACATTGGTTCAAATGATT+TGG | + | chr4.4:39500666-39500685 | MS.gene003895:intron | 25.0% |
| !!! | TTCATCATGGCATTTTTTTT+TGG | + | chr4.4:39501357-39501376 | MS.gene003895:intron | 25.0% |
| !!! | TTTTAGGTAATTTCTAGAGT+GGG | + | chr4.4:39498720-39498739 | MS.gene003895:intron | 25.0% |
| !!! | TTTTTGTTTCTTCTTTTTCC+AGG | + | chr4.4:39500818-39500837 | MS.gene003895:intron | 25.0% |
| AAAAACACCTAAAACAATGG+TGG | - | chr4.4:39499100-39499119 | None:intergenic | 30.0% | |
| AAGAGACTTATGAAGATTCA+AGG | + | chr4.4:39500708-39500727 | MS.gene003895:intron | 30.0% | |
| AATAGGTTATGAATGTTGCA+TGG | + | chr4.4:39501058-39501077 | MS.gene003895:intron | 30.0% | |
| AATCTTCTTTCCTGATAACA+TGG | - | chr4.4:39500084-39500103 | None:intergenic | 30.0% | |
| AATTCTATCAGTCAAACAGT+AGG | - | chr4.4:39499534-39499553 | None:intergenic | 30.0% | |
| ACATTCTTGAGAAAATGTCA+TGG | - | chr4.4:39499406-39499425 | None:intergenic | 30.0% | |
| ACGTGATAAAGTGATAAGAT+CGG | + | chr4.4:39498837-39498856 | MS.gene003895:intron | 30.0% | |
| ATACCATGAGCTTCTATTTA+CGG | + | chr4.4:39498987-39499006 | MS.gene003895:intron | 30.0% | |
| ATCAAAATTCCCATGTTATC+AGG | + | chr4.4:39500071-39500090 | MS.gene003895:intron | 30.0% | |
| ATCTTCTTTCCTGATAACAT+GGG | - | chr4.4:39500083-39500102 | None:intergenic | 30.0% | |
| ATTAATAGAGGAAAGAAGCT+AGG | - | chr4.4:39501735-39501754 | None:intergenic | 30.0% | |
| ATTCTATCAGTCAAACAGTA+GGG | - | chr4.4:39499533-39499552 | None:intergenic | 30.0% | |
| ATTTCAGATTCCTTGAAGTT+GGG | - | chr4.4:39501852-39501871 | None:intergenic | 30.0% | |
| CAATTAATCCTCTATTGGTA+TGG | + | chr4.4:39502296-39502315 | MS.gene003895:intron | 30.0% | |
| CATACCAATAGAGGATTAAT+TGG | - | chr4.4:39502298-39502317 | None:intergenic | 30.0% | |
| GCTATGGGAACAAATAAATT+AGG | - | chr4.4:39501220-39501239 | None:intergenic | 30.0% | |
| GTTCTTTCCTCTATTAAAGA+TGG | - | chr4.4:39501426-39501445 | None:intergenic | 30.0% | |
| TACTTCAAAAGTAAAATGGC+AGG | - | chr4.4:39500438-39500457 | None:intergenic | 30.0% | |
| TAGAAGCTCATGGTATAATT+CGG | - | chr4.4:39498983-39499002 | None:intergenic | 30.0% | |
| TATGCAAAGTCTTCAATTTC+AGG | - | chr4.4:39498400-39498419 | None:intergenic | 30.0% | |
| TATTTCAGATTCCTTGAAGT+TGG | - | chr4.4:39501853-39501872 | None:intergenic | 30.0% | |
| TGAGATTACATCTTACAAAG+TGG | + | chr4.4:39501548-39501567 | MS.gene003895:intron | 30.0% | |
| TTACAATCTCTCTTTGTAAG+TGG | + | chr4.4:39501943-39501962 | MS.gene003895:intron | 30.0% | |
| TTGATAAAAGAGAAGATACC+AGG | - | chr4.4:39500113-39500132 | None:intergenic | 30.0% | |
| TTTAACTATCTGGTGTGAAT+CGG | - | chr4.4:39500279-39500298 | None:intergenic | 30.0% | |
| TTTCAGTTCAGCAAAAAACA+AGG | - | chr4.4:39498921-39498940 | None:intergenic | 30.0% | |
| ! | ACTTTTATAAGATCGACAAG+GGG | - | chr4.4:39498588-39498607 | None:intergenic | 30.0% |
| ! | CATTTCTGATTTTACTGCAA+CGG | - | chr4.4:39498617-39498636 | None:intergenic | 30.0% |
| ! | GATTTTGTTAATGGCACAAT+AGG | + | chr4.4:39501041-39501060 | MS.gene003895:intron | 30.0% |
| ! | TAAAACAATGGTGGCTTTTA+GGG | - | chr4.4:39499091-39499110 | None:intergenic | 30.0% |
| ! | TAAATGCTTATCTCCTCTTT+TGG | + | chr4.4:39499122-39499141 | MS.gene003895:intron | 30.0% |
| ! | TGGGTAAATCAACTTTTTGA+TGG | - | chr4.4:39500619-39500638 | None:intergenic | 30.0% |
| ! | TTCAATATATTTGCTGCTGT+CGG | + | chr4.4:39501272-39501291 | MS.gene003895:intron | 30.0% |
| ! | TTGCAAAAGGGAATTGTTTT+AGG | + | chr4.4:39498704-39498723 | MS.gene003895:intron | 30.0% |
| !! | AAGGTTATGTTTGTTTTTCG+CGG | + | chr4.4:39500768-39500787 | MS.gene003895:intron | 30.0% |
| !! | ACTCTTCATTTTAACAATGC+TGG | + | chr4.4:39499216-39499235 | MS.gene003895:intron | 30.0% |
| !! | GTTTTAGGTAATTTCTAGAG+TGG | + | chr4.4:39498719-39498738 | MS.gene003895:intron | 30.0% |
| !! | TCTGAAGCTGATTTTGTTAA+TGG | + | chr4.4:39501032-39501051 | MS.gene003895:intron | 30.0% |
| !!! | AAACAGGTTCCTTTTAAGTT+TGG | + | chr4.4:39501162-39501181 | MS.gene003895:intron | 30.0% |
| !!! | CTCAACGTATGATTTTTAGT+TGG | + | chr4.4:39500005-39500024 | MS.gene003895:intron | 30.0% |
| !!! | CTTTGGCTTTTTTGTTTCTT+CGG | - | chr4.4:39498052-39498071 | None:intergenic | 30.0% |
| AAAAGAAACAGGGAACATAC+TGG | - | chr4.4:39500639-39500658 | None:intergenic | 35.0% | |
| AAAGAAACAGGGAACATACT+GGG | - | chr4.4:39500638-39500657 | None:intergenic | 35.0% | |
| AATCCTACAGTCAATGTGTT+TGG | - | chr4.4:39498546-39498565 | None:intergenic | 35.0% | |
| ACCAAGGATCATATCAATCA+TGG | + | chr4.4:39500138-39500157 | MS.gene003895:CDS | 35.0% | |
| ACCATGATTGATATGATCCT+TGG | - | chr4.4:39500142-39500161 | None:intergenic | 35.0% | |
| ACTTTATGAGTCTGTGTTGA+AGG | - | chr4.4:39498119-39498138 | None:intergenic | 35.0% | |
| AGTTACGTGATGTTAAGCTA+TGG | + | chr4.4:39501690-39501709 | MS.gene003895:intron | 35.0% | |
| ATAATACAGGGTCAAACCTT+AGG | - | chr4.4:39499730-39499749 | None:intergenic | 35.0% | |
| ATTACCCTAAGCAAAAGTTC+AGG | + | chr4.4:39498797-39498816 | MS.gene003895:intron | 35.0% | |
| ATTTGTCTCATGAAGTATGG+TGG | + | chr4.4:39500888-39500907 | MS.gene003895:CDS | 35.0% | |
| CACCTATAAGTCTATAGCAA+TGG | + | chr4.4:39499455-39499474 | MS.gene003895:intron | 35.0% | |
| CATCCGATCAAGATTAATAG+AGG | - | chr4.4:39501747-39501766 | None:intergenic | 35.0% | |
| CCAACTCTTGAAATGAGTAA+TGG | - | chr4.4:39499924-39499943 | None:intergenic | 35.0% | |
| CCATTACTCATTTCAAGAGT+TGG | + | chr4.4:39499921-39499940 | MS.gene003895:intron | 35.0% | |
| CGAAGAAACAAAAAAGCCAA+AGG | + | chr4.4:39498050-39498069 | MS.gene003895:CDS | 35.0% | |
| CGTTCAACTCTAACAAAGAT+CGG | - | chr4.4:39499022-39499041 | None:intergenic | 35.0% | |
| CTCCATTGCTATAGACTTAT+AGG | - | chr4.4:39499460-39499479 | None:intergenic | 35.0% | |
| CTTTAATAGAGGAAAGAACC+AGG | + | chr4.4:39501427-39501446 | MS.gene003895:intron | 35.0% | |
| GAAATGAGTAATGGCTATAC+TGG | - | chr4.4:39499915-39499934 | None:intergenic | 35.0% | |
| GAAGTCTACCACAAACAAAA+TGG | - | chr4.4:39501340-39501359 | None:intergenic | 35.0% | |
| GATTACACGAATAGTTGACA+AGG | - | chr4.4:39499963-39499982 | None:intergenic | 35.0% | |
| GATTGATATGATCCTTGGTT+TGG | - | chr4.4:39500137-39500156 | None:intergenic | 35.0% | |
| GGATCCAATTAATCCTCTAT+TGG | + | chr4.4:39502291-39502310 | MS.gene003895:CDS | 35.0% | |
| TACCATGAGCTTCTATTTAC+GGG | + | chr4.4:39498988-39499007 | MS.gene003895:intron | 35.0% | |
| TATTTGTTCCCATAGCATCT+TGG | + | chr4.4:39501224-39501243 | MS.gene003895:intron | 35.0% | |
| TCAGCATTGTTAATTGCATC+AGG | - | chr4.4:39500588-39500607 | None:intergenic | 35.0% | |
| TCTGTTGAATATCAACAGGT+TGG | + | chr4.4:39502485-39502504 | MS.gene003895:intron | 35.0% | |
| TGAGTTTACCATACCAATAG+AGG | - | chr4.4:39502307-39502326 | None:intergenic | 35.0% | |
| TGATGCAATTAACAATGCTG+AGG | + | chr4.4:39500587-39500606 | MS.gene003895:CDS | 35.0% | |
| TTACCCTAAGCAAAAGTTCA+GGG | + | chr4.4:39498798-39498817 | MS.gene003895:intron | 35.0% | |
| TTACTACTTACCACTATGTG+TGG | - | chr4.4:39498680-39498699 | None:intergenic | 35.0% | |
| TTGCTGAACTGAAACTGATT+AGG | + | chr4.4:39498927-39498946 | MS.gene003895:intron | 35.0% | |
| TTTAATTATCCGTCCACTGT+AGG | + | chr4.4:39499045-39499064 | MS.gene003895:intron | 35.0% | |
| TTTCTTGTGTTGAGTCTCAT+CGG | - | chr4.4:39502404-39502423 | None:intergenic | 35.0% | |
| ! | AGTAGTTGCTCAATTTTGCT+AGG | - | chr4.4:39500921-39500940 | None:intergenic | 35.0% |
| ! | ATGCTGGCTGTTTAATCATT+TGG | + | chr4.4:39499232-39499251 | MS.gene003895:intron | 35.0% |
| ! | CTAAAACAATGGTGGCTTTT+AGG | - | chr4.4:39499092-39499111 | None:intergenic | 35.0% |
| ! | CTAAAAGCCACCATTGTTTT+AGG | + | chr4.4:39499090-39499109 | MS.gene003895:intron | 35.0% |
| ! | CTTCAGATTAAAGGTGTGTT+TGG | + | chr4.4:39501980-39501999 | MS.gene003895:intron | 35.0% |
| ! | GAATATCAACAGGTTGGATT+TGG | + | chr4.4:39502491-39502510 | MS.gene003895:intron | 35.0% |
| ! | GATGTAGTTTTTCTGTCACT+TGG | + | chr4.4:39502156-39502175 | MS.gene003895:intron | 35.0% |
| ! | GTTTCTTCTTTTTCCAGGTT+GGG | + | chr4.4:39500823-39500842 | MS.gene003895:intron | 35.0% |
| ! | TCTTTTATCAAGCCAAACCA+AGG | + | chr4.4:39500122-39500141 | MS.gene003895:CDS | 35.0% |
| ! | TGTTTCTTCTTTTTCCAGGT+TGG | + | chr4.4:39500822-39500841 | MS.gene003895:intron | 35.0% |
| ! | TTATAGATGCATTTTGCGAC+TGG | + | chr4.4:39501581-39501600 | MS.gene003895:intron | 35.0% |
| !! | ATTTCTAGAGTGGGTAAATG+TGG | + | chr4.4:39498729-39498748 | MS.gene003895:intron | 35.0% |
| !! | TTGTTGAAGTTTTGTGGTAG+TGG | - | chr4.4:39498084-39498103 | None:intergenic | 35.0% |
| !!! | TAAGCAGATCGTTTTGAAGA+AGG | - | chr4.4:39500563-39500582 | None:intergenic | 35.0% |
| AAATGTGTAGGTGTAGGTGT+AGG | - | chr4.4:39502044-39502063 | None:intergenic | 40.0% | |
| AACTGATTAGGTCACTGTCT+AGG | + | chr4.4:39498939-39498958 | MS.gene003895:intron | 40.0% | |
| ACACAATAACATGCAAGCTG+AGG | - | chr4.4:39500738-39500757 | None:intergenic | 40.0% | |
| ACACCTTAAGTCTACTAGTC+TGG | + | chr4.4:39499557-39499576 | MS.gene003895:intron | 40.0% | |
| ACACGAATAGTTGACAAGGT+TGG | - | chr4.4:39499959-39499978 | None:intergenic | 40.0% | |
| ACCATGAGCTTCTATTTACG+GGG | + | chr4.4:39498989-39499008 | MS.gene003895:intron | 40.0% | |
| AGACTAGTAGACTTAAGGTG+TGG | - | chr4.4:39499558-39499577 | None:intergenic | 40.0% | |
| AGTTGTGCCAGTAACTGATT+CGG | + | chr4.4:39501658-39501677 | MS.gene003895:intron | 40.0% | |
| ATCCCAGACTAGTAGACTTA+AGG | - | chr4.4:39499563-39499582 | None:intergenic | 40.0% | |
| CAACTTCCCAAAACAAACCA+AGG | - | chr4.4:39497915-39497934 | None:intergenic | 40.0% | |
| CATACCAAATGAGCCATCTT+AGG | - | chr4.4:39500963-39500982 | None:intergenic | 40.0% | |
| CCATACAATTCAAGTCGAGT+TGG | - | chr4.4:39500999-39501018 | None:intergenic | 40.0% | |
| CTATTAAAGATGGACAACCC+AGG | - | chr4.4:39501416-39501435 | None:intergenic | 40.0% | |
| CTTAATATGGTATCAGAGCC+TGG | - | chr4.4:39501448-39501467 | None:intergenic | 40.0% | |
| CTTACAGTGACACGTAAACA+TGG | - | chr4.4:39502105-39502124 | None:intergenic | 40.0% | |
| GAGTATCTACACATATCCCT+TGG | - | chr4.4:39501092-39501111 | None:intergenic | 40.0% | |
| GAGTGGGTAAATGTGGTTTA+CGG | + | chr4.4:39498736-39498755 | MS.gene003895:intron | 40.0% | |
| GATTCCAACTGAAAGTGAAG+TGG | + | chr4.4:39498648-39498667 | MS.gene003895:CDS | 40.0% | |
| GGGTTGTCCATCTTTAATAG+AGG | + | chr4.4:39501416-39501435 | MS.gene003895:intron | 40.0% | |
| GTAACCAAATGTGTAGGTGT+AGG | - | chr4.4:39502050-39502069 | None:intergenic | 40.0% | |
| GTGATGCCACCAAACTTAAA+AGG | - | chr4.4:39501174-39501193 | None:intergenic | 40.0% | |
| GTTTGTGGTAGACTTCATCA+TGG | + | chr4.4:39501344-39501363 | MS.gene003895:intron | 40.0% | |
| TAAAGTGATAAGATCGGCGT+TGG | + | chr4.4:39498843-39498862 | MS.gene003895:intron | 40.0% | |
| TACACCTACACCTACACATT+TGG | + | chr4.4:39502043-39502062 | MS.gene003895:intron | 40.0% | |
| TGTAGGATTCCTTGACTGTA+GGG | + | chr4.4:39498557-39498576 | MS.gene003895:intron | 40.0% | |
| TGTTAATGCATTCACGCAGT+CGG | + | chr4.4:39498483-39498502 | MS.gene003895:intron | 40.0% | |
| TTCTCAACCGAATCAGTTAC+TGG | - | chr4.4:39501668-39501687 | None:intergenic | 40.0% | |
| TTCTCGTATAAAACCCAACC+TGG | - | chr4.4:39500839-39500858 | None:intergenic | 40.0% | |
| TTGCATGGAACAATGTCCAA+GGG | + | chr4.4:39501073-39501092 | MS.gene003895:CDS | 40.0% | |
| TTTGTAAGTGGCTTGAACAC+CGG | + | chr4.4:39501955-39501974 | MS.gene003895:intron | 40.0% | |
| ! | ACACCTTTAATCTGAAGTGC+CGG | - | chr4.4:39501977-39501996 | None:intergenic | 40.0% |
| ! | ATTCGCAAAATGAGGTGTTC+TGG | + | chr4.4:39499652-39499671 | MS.gene003895:CDS | 40.0% |
| ! | CACCTTAAGTCTACTAGTCT+GGG | + | chr4.4:39499558-39499577 | MS.gene003895:intron | 40.0% |
| ! | CCAACTCGACTTGAATTGTA+TGG | + | chr4.4:39500996-39501015 | MS.gene003895:intron | 40.0% |
| ! | GTTCCAAACACATTGACTGT+AGG | + | chr4.4:39498540-39498559 | MS.gene003895:intron | 40.0% |
| !! | TTGAGGGTATTCGCAAAATG+AGG | + | chr4.4:39499644-39499663 | MS.gene003895:CDS | 40.0% |
| !! | TTTCTGGCTTCTGTACATAG+CGG | + | chr4.4:39500209-39500228 | MS.gene003895:intron | 40.0% |
| !!! | CAGGTTCCTTTTAAGTTTGG+TGG | + | chr4.4:39501165-39501184 | MS.gene003895:intron | 40.0% |
| !!! | CTTGGTTTGTTTTGGGAAGT+TGG | + | chr4.4:39497913-39497932 | MS.gene003895:CDS | 40.0% |
| !!! | TCGTCTCCTTGGTTTGTTTT+GGG | + | chr4.4:39497906-39497925 | MS.gene003895:CDS | 40.0% |
| !!! | TTGAAGTTTTGTGGTAGTGG+TGG | - | chr4.4:39498081-39498100 | None:intergenic | 40.0% |
| ACACCGGCACTTCAGATTAA+AGG | + | chr4.4:39501971-39501990 | MS.gene003895:intron | 45.0% | |
| ACTATGGGATGTGAGAAAGC+TGG | + | chr4.4:39499691-39499710 | MS.gene003895:CDS | 45.0% | |
| ACTGCAATTGTGGCTTCCAA+GGG | + | chr4.4:39502261-39502280 | MS.gene003895:CDS | 45.0% | |
| AGGTCCTAAGATGGCTCATT+TGG | + | chr4.4:39500956-39500975 | MS.gene003895:CDS | 45.0% | |
| AGGTTGCTTCTCTAATCGCA+AGG | - | chr4.4:39501396-39501415 | None:intergenic | 45.0% | |
| AGTACAGCATGCTTGTGTGT+TGG | + | chr4.4:39499373-39499392 | MS.gene003895:intron | 45.0% | |
| AGTGACACTCTTGTCTCTTC+AGG | - | chr4.4:39502244-39502263 | None:intergenic | 45.0% | |
| AGTTAAATCACCTGCACGCT+GGG | + | chr4.4:39499612-39499631 | MS.gene003895:intron | 45.0% | |
| ATACAGGGTCAAACCTTAGG+AGG | - | chr4.4:39499727-39499746 | None:intergenic | 45.0% | |
| ATACTACATTCTCCACAGCG+AGG | - | chr4.4:39502542-39502561 | None:intergenic | 45.0% | |
| ATTGGATCCCATTCTTCCCT+TGG | - | chr4.4:39502280-39502299 | None:intergenic | 45.0% | |
| CTACTACAACTTCCAGGCAT+AGG | + | chr4.4:39500936-39500955 | MS.gene003895:CDS | 45.0% | |
| CTGTAGGATTCCTTGACTGT+AGG | + | chr4.4:39498556-39498575 | MS.gene003895:intron | 45.0% | |
| CTTCTTGTTCCTTCCAGACT+TGG | - | chr4.4:39502627-39502646 | None:intergenic | 45.0% | |
| GAAGCCACTTCACTTTCAGT+TGG | - | chr4.4:39498655-39498674 | None:intergenic | 45.0% | |
| GACGTAGACATGAACTGGTT+GGG | - | chr4.4:39498030-39498049 | None:intergenic | 45.0% | |
| GAGCAACTACTACAACTTCC+AGG | + | chr4.4:39500930-39500949 | MS.gene003895:CDS | 45.0% | |
| GTCGTCTGATCTTGATCAGT+CGG | + | chr4.4:39498516-39498535 | MS.gene003895:intron | 45.0% | |
| GTGTTTCATATGGCCTACAG+TGG | - | chr4.4:39499061-39499080 | None:intergenic | 45.0% | |
| GTTGCATGGAACAATGTCCA+AGG | + | chr4.4:39501072-39501091 | MS.gene003895:CDS | 45.0% | |
| TAGTTAAATCACCTGCACGC+TGG | + | chr4.4:39499611-39499630 | MS.gene003895:intron | 45.0% | |
| TATCACGTGTAAGAACGTCG+AGG | - | chr4.4:39498825-39498844 | None:intergenic | 45.0% | |
| TCCCCGTAAATAGAAGCTCA+TGG | - | chr4.4:39498993-39499012 | None:intergenic | 45.0% | |
| TGCGATTAGAGAAGCAACCT+GGG | + | chr4.4:39501396-39501415 | MS.gene003895:intron | 45.0% | |
| TGGGTAAATGTGGTTTACGG+TGG | + | chr4.4:39498739-39498758 | MS.gene003895:intron | 45.0% | |
| TTCATATGGCCTACAGTGGA+CGG | - | chr4.4:39499057-39499076 | None:intergenic | 45.0% | |
| TTCGTGATCTCCCAACTTCA+AGG | + | chr4.4:39501839-39501858 | MS.gene003895:intron | 45.0% | |
| TTGCGATTAGAGAAGCAACC+TGG | + | chr4.4:39501395-39501414 | MS.gene003895:intron | 45.0% | |
| ! | AGGACCCTGAACTTTTGCTT+AGG | - | chr4.4:39498805-39498824 | None:intergenic | 45.0% |
| ! | GAAGCTAGGCTAGCTAACTA+TGG | - | chr4.4:39501721-39501740 | None:intergenic | 45.0% |
| ! | GGACCCTGAACTTTTGCTTA+GGG | - | chr4.4:39498804-39498823 | None:intergenic | 45.0% |
| !! | ACTTGGTGGATTTGGGAACT+GGG | - | chr4.4:39502610-39502629 | None:intergenic | 45.0% |
| !! | CAAGAGTGTCACTGCAATTG+TGG | + | chr4.4:39502251-39502270 | MS.gene003895:CDS | 45.0% |
| !! | CTTCCAGACTTGGTGGATTT+GGG | - | chr4.4:39502617-39502636 | None:intergenic | 45.0% |
| !! | GGAAAGAAGATTTGCTGTCC+TGG | + | chr4.4:39500092-39500111 | MS.gene003895:intron | 45.0% |
| !! | GGGTGAGGAAGTGTTTCATA+TGG | - | chr4.4:39499071-39499090 | None:intergenic | 45.0% |
| !!! | GATCGTTTTGAAGAAGGCGT+TGG | - | chr4.4:39500557-39500576 | None:intergenic | 45.0% |
| !!! | GTCGTCTCCTTGGTTTGTTT+TGG | + | chr4.4:39497905-39497924 | MS.gene003895:CDS | 45.0% |
| AACAAACCAAGGAGACGACG+AGG | - | chr4.4:39497904-39497923 | None:intergenic | 50.0% | |
| ACAAACCAAGGAGACGACGA+GGG | - | chr4.4:39497903-39497922 | None:intergenic | 50.0% | |
| AGATGCACCAGTGGACACTA+TGG | + | chr4.4:39499675-39499694 | MS.gene003895:CDS | 50.0% | |
| AGTTGGGAGATCACGAAGCT+TGG | - | chr4.4:39501836-39501855 | None:intergenic | 50.0% | |
| ATGTCCACCGCATCTGCAAT+CGG | + | chr4.4:39501112-39501131 | MS.gene003895:CDS | 50.0% | |
| CACCAGCACCAAGATGCTAT+GGG | - | chr4.4:39501235-39501254 | None:intergenic | 50.0% | |
| CACTGCAATTGTGGCTTCCA+AGG | + | chr4.4:39502260-39502279 | MS.gene003895:CDS | 50.0% | |
| CCAAATCCACCAAGTCTGGA+AGG | + | chr4.4:39502615-39502634 | MS.gene003895:CDS | 50.0% | |
| CTCGGTTGGGTGTCAAGATT+GGG | + | chr4.4:39501135-39501154 | MS.gene003895:CDS | 50.0% | |
| CTTCGGACGTAGACATGAAC+TGG | - | chr4.4:39498035-39498054 | None:intergenic | 50.0% | |
| CTTGTTCCTTCCAGACTTGG+TGG | - | chr4.4:39502624-39502643 | None:intergenic | 50.0% | |
| GATGCACCAGTGGACACTAT+GGG | + | chr4.4:39499676-39499695 | MS.gene003895:CDS | 50.0% | |
| GCCAAATGCCAATGTGCAAC+TGG | - | chr4.4:39501613-39501632 | None:intergenic | 50.0% | |
| GCCAGTTGCACATTGGCATT+TGG | + | chr4.4:39501609-39501628 | MS.gene003895:intron | 50.0% | |
| GGACGTAGACATGAACTGGT+TGG | - | chr4.4:39498031-39498050 | None:intergenic | 50.0% | |
| GTAGGTGTAGGTGTAGGTGT+AGG | - | chr4.4:39502032-39502051 | None:intergenic | 50.0% | |
| GTAGGTGTAGGTGTAGGTGT+CGG | - | chr4.4:39502032-39502051 | None:intergenic | 50.0% | |
| GTCAAGATTGGGCACGAAAC+AGG | + | chr4.4:39501146-39501165 | MS.gene003895:CDS | 50.0% | |
| GTCGGAGAGTTTGATGGAAG+CGG | - | chr4.4:39497979-39497998 | None:intergenic | 50.0% | |
| GTGGCTTCCAAGGGAAGAAT+GGG | + | chr4.4:39502270-39502289 | MS.gene003895:CDS | 50.0% | |
| GTGGCTTCTACCACACATAG+TGG | + | chr4.4:39498667-39498686 | MS.gene003895:CDS | 50.0% | |
| GTTCCCAAATCCACCAAGTC+TGG | + | chr4.4:39502611-39502630 | MS.gene003895:CDS | 50.0% | |
| TCACATCCCATAGTGTCCAC+TGG | - | chr4.4:39499685-39499704 | None:intergenic | 50.0% | |
| TCCAGGCATAGGTCCTAAGA+TGG | + | chr4.4:39500947-39500966 | MS.gene003895:CDS | 50.0% | |
| TGTGGCTTCCAAGGGAAGAA+TGG | + | chr4.4:39502269-39502288 | MS.gene003895:CDS | 50.0% | |
| ! | GGTAGTGGTGGTGATTCCTT+TGG | - | chr4.4:39498069-39498088 | None:intergenic | 50.0% |
| ! | TGGTTCTACGCTACCTCCTA+AGG | + | chr4.4:39499711-39499730 | MS.gene003895:CDS | 50.0% |
| ! | TTCCCATAGCATCTTGGTGC+TGG | + | chr4.4:39501230-39501249 | MS.gene003895:intron | 50.0% |
| !! | CCTTCCAGACTTGGTGGATT+TGG | - | chr4.4:39502618-39502637 | None:intergenic | 50.0% |
| !! | GACTTGGTGGATTTGGGAAC+TGG | - | chr4.4:39502611-39502630 | None:intergenic | 50.0% |
| !!! | CAATGGTGGCTTTTAGGGTG+AGG | - | chr4.4:39499086-39499105 | None:intergenic | 50.0% |
| AACCGAGCCGATTGCAGATG+CGG | - | chr4.4:39501122-39501141 | None:intergenic | 55.0% | |
| CTTGTGTCCATCCGCGTTCA+AGG | + | chr4.4:39502568-39502587 | MS.gene003895:CDS | 55.0% | |
| GCACCAGCACCAAGATGCTA+TGG | - | chr4.4:39501236-39501255 | None:intergenic | 55.0% | |
| GCCATCTTAGGACCTATGCC+TGG | - | chr4.4:39500951-39500970 | None:intergenic | 55.0% | |
| GCTCGGTTGGGTGTCAAGAT+TGG | + | chr4.4:39501134-39501153 | MS.gene003895:CDS | 55.0% | |
| GGCATTTGGCAGTGACTGAC+TGG | + | chr4.4:39501623-39501642 | MS.gene003895:intron | 55.0% | |
| GGCTACTGCCAGTTGCACAT+TGG | + | chr4.4:39501602-39501621 | MS.gene003895:intron | 55.0% | |
| GTCGGAGTCGGAGAGTTTGA+TGG | - | chr4.4:39497985-39498004 | None:intergenic | 55.0% | |
| TCTCCACAGCGAGGTCTTAG+AGG | - | chr4.4:39502533-39502552 | None:intergenic | 55.0% | |
| !! | AAGCTGAAGCGCCGGATTTG+GGG | - | chr4.4:39498007-39498026 | None:intergenic | 55.0% |
| !! | ACACCTCTAAGACCTCGCTG+TGG | + | chr4.4:39502527-39502546 | MS.gene003895:CDS | 55.0% |
| !! | CATCTGCAATCGGCTCGGTT+GGG | + | chr4.4:39501122-39501141 | MS.gene003895:CDS | 55.0% |
| !! | GAAGCTGAAGCGCCGGATTT+GGG | - | chr4.4:39498008-39498027 | None:intergenic | 55.0% |
| !! | GTGTTCTGGAGATGCACCAG+TGG | + | chr4.4:39499666-39499685 | MS.gene003895:CDS | 55.0% |
| ACCAAGGAGACGACGAGGGA+AGG | - | chr4.4:39497899-39497918 | None:intergenic | 60.0% | |
| ACCTGCGGCTTCCTTGAACG+CGG | - | chr4.4:39502582-39502601 | None:intergenic | 60.0% | |
| ACGCTGGGAAGAGACGCTTG+AGG | + | chr4.4:39499627-39499646 | MS.gene003895:CDS | 60.0% | |
| CACCGCATCTGCAATCGGCT+CGG | + | chr4.4:39501117-39501136 | MS.gene003895:CDS | 60.0% | |
| CGCTGGGAAGAGACGCTTGA+GGG | + | chr4.4:39499628-39499647 | MS.gene003895:CDS | 60.0% | |
| GGGAACTGGGCTTGTACCTG+CGG | - | chr4.4:39502597-39502616 | None:intergenic | 60.0% | |
| GGGGCGATTCCCTACAGTCA+AGG | - | chr4.4:39498569-39498588 | None:intergenic | 60.0% | |
| TCCGACTCCGACCCCAAATC+CGG | + | chr4.4:39497993-39498012 | MS.gene003895:CDS | 60.0% | |
| TCCTTCCCTCGTCGTCTCCT+TGG | + | chr4.4:39497895-39497914 | MS.gene003895:CDS | 60.0% | |
| TGGTTGGGAAGCTGAAGCGC+CGG | - | chr4.4:39498015-39498034 | None:intergenic | 60.0% | |
| !! | GCATCTGCAATCGGCTCGGT+TGG | + | chr4.4:39501121-39501140 | MS.gene003895:CDS | 60.0% |
| !! | GGAAGCTGAAGCGCCGGATT+TGG | - | chr4.4:39498009-39498028 | None:intergenic | 60.0% |
| !! | TGAAGCGCCGGATTTGGGGT+CGG | - | chr4.4:39498003-39498022 | None:intergenic | 60.0% |
| AGCGTCTCTTCCCAGCGTGC+AGG | - | chr4.4:39499625-39499644 | None:intergenic | 65.0% | |
| CGAGCCGATTGCAGATGCGG+TGG | - | chr4.4:39501119-39501138 | None:intergenic | 65.0% | |
| GCGGCTTCCTTGAACGCGGA+TGG | - | chr4.4:39502578-39502597 | None:intergenic | 65.0% | |
| TCCGCGTTCAAGGAAGCCGC+AGG | + | chr4.4:39502578-39502597 | MS.gene003895:CDS | 65.0% | |
| ! | GCCGGATTTGGGGTCGGAGT+CGG | - | chr4.4:39497997-39498016 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39497888 | 39502652 | 39497888 | ID=MS.gene003895 |
| chr4.4 | mRNA | 39497888 | 39502652 | 39497888 | ID=MS.gene003895.t1;Parent=MS.gene003895 |
| chr4.4 | exon | 39497888 | 39498136 | 39497888 | ID=MS.gene003895.t1.exon1;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39497888 | 39498136 | 39497888 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| chr4.4 | exon | 39498385 | 39498448 | 39498385 | ID=MS.gene003895.t1.exon2;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39498385 | 39498448 | 39498385 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| chr4.4 | exon | 39498623 | 39498688 | 39498623 | ID=MS.gene003895.t1.exon3;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39498623 | 39498688 | 39498623 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| chr4.4 | exon | 39499614 | 39499732 | 39499614 | ID=MS.gene003895.t1.exon4;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39499614 | 39499732 | 39499614 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| chr4.4 | exon | 39500093 | 39500159 | 39500093 | ID=MS.gene003895.t1.exon5;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39500093 | 39500159 | 39500093 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| chr4.4 | exon | 39500547 | 39500638 | 39500547 | ID=MS.gene003895.t1.exon6;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39500547 | 39500638 | 39500547 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| chr4.4 | exon | 39500840 | 39500977 | 39500840 | ID=MS.gene003895.t1.exon7;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39500840 | 39500977 | 39500840 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| chr4.4 | exon | 39501063 | 39501167 | 39501063 | ID=MS.gene003895.t1.exon8;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39501063 | 39501167 | 39501063 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| chr4.4 | exon | 39502229 | 39502312 | 39502229 | ID=MS.gene003895.t1.exon9;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39502229 | 39502312 | 39502229 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| chr4.4 | exon | 39502503 | 39502652 | 39502503 | ID=MS.gene003895.t1.exon10;Parent=MS.gene003895.t1 |
| chr4.4 | CDS | 39502503 | 39502652 | 39502503 | ID=cds.MS.gene003895.t1;Parent=MS.gene003895.t1 |
| Gene Sequence |
| Protein sequence |
