AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02580.t1 MTR_3g088510 86.648 352 19 1 1 324 1 352 0.0 589
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02580.t1 AT1G21710 58.383 334 105 5 7 311 11 339 3.11e-131 380

Find 117 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTCTCTTGGGACTTATTT+AGG 0.186122 3.2:-75274359 MS.gene02580:CDS
GGAGTGGCGGGTTTGGGTTT+GGG 0.225556 3.2:+75274814 None:intergenic
TGGAGTGGCGGGTTTGGGTT+TGG 0.232265 3.2:+75274813 None:intergenic
CGGGTTTGGGTTTGGGGTGT+TGG 0.241345 3.2:+75274821 None:intergenic
GAGTGGCGGGTTTGGGTTTG+GGG 0.249611 3.2:+75274815 None:intergenic
GTTGGTGGAGTGGCGGGTTT+GGG 0.259029 3.2:+75274808 None:intergenic
GGTTGGTGGAGTGGCGGGTT+TGG 0.265429 3.2:+75274807 None:intergenic
CGATGAAAGATTTGCGGAAC+TGG 0.268100 3.2:-75274498 MS.gene02580:CDS
GTTTGGGTTTGGGGTGTTGG+TGG 0.298537 3.2:+75274824 None:intergenic
TATTAGTAGAATTACGAAAA+TGG 0.313783 3.2:-75274393 MS.gene02580:CDS
GCTATACAAGCAGCCACTTT+AGG 0.318798 3.2:+75274020 None:intergenic
TGGGGTGTTGGTGGTGTTGA+AGG 0.319486 3.2:+75274833 None:intergenic
GTTGATTACGTTTCGTCTCT+TGG 0.337618 3.2:-75274371 MS.gene02580:CDS
GCTCGGGTAAGATATACTTT+TGG 0.347590 3.2:+75273239 None:intergenic
AGCCATTCTTCCCCACCTTC+AGG 0.363722 3.2:+75274110 None:intergenic
AATCATCGTTGGAGGGAGAT+TGG 0.385553 3.2:+75274594 None:intergenic
TATATCTTACCCGAGCTTGC+AGG 0.389581 3.2:-75273232 MS.gene02580:CDS
CGCCAAACATGAACATCAAC+AGG 0.405155 3.2:+75273966 None:intergenic
TTGATTACGTTTCGTCTCTT+GGG 0.411601 3.2:-75274370 MS.gene02580:CDS
TTCCTGTTGATGTTCATGTT+TGG 0.414571 3.2:-75273968 MS.gene02580:CDS
GATAGGGCTAAATATATAAC+TGG 0.417698 3.2:-75274158 MS.gene02580:intron
TGAGAGGTTGGTGGAGTGGC+GGG 0.426079 3.2:+75274802 None:intergenic
TGCTGAGTTGCCTTCACAAA+AGG 0.426910 3.2:-75273113 MS.gene02580:CDS
AAGAGGAGGAGGTAGTGATT+TGG 0.432835 3.2:+75274859 None:intergenic
TCTCAATTCACCGGCGTCGT+TGG 0.434809 3.2:-75274677 MS.gene02580:CDS
AGGACCAACTCCAGGTAACT+TGG 0.437622 3.2:+75274040 None:intergenic
AGCCTGAAGGTGGGGAAGAA+TGG 0.438759 3.2:-75274112 MS.gene02580:CDS
TGACACGTGGAAGGTGTTCT+CGG 0.441693 3.2:-75274525 MS.gene02580:CDS
ATCATCGTTGGAGGGAGATT+GGG 0.447502 3.2:+75274595 None:intergenic
CGCAACATTTGAGTGGTGCT+AGG 0.448095 3.2:-75274475 MS.gene02580:CDS
CTTTGCGGGATTCTTCTGCT+TGG 0.449310 3.2:+75273063 None:intergenic
ACCTCTCAAAATCCCGGGTA+TGG 0.449896 3.2:-75274787 MS.gene02580:CDS
CAACTTGGAACCTGCAAGCT+CGG 0.455192 3.2:+75273222 None:intergenic
CCTCCTACCTTTACACTTGA+GGG 0.458910 3.2:-75273089 MS.gene02580:CDS
GCAGAAGAATCCCGCAAAGA+TGG 0.464791 3.2:-75273059 MS.gene02580:CDS
TGAACTACTGGCGGATGACT+TGG 0.470805 3.2:-75272631 MS.gene02580:CDS
TGACTTGGTCGTTGCGAACA+TGG 0.471669 3.2:-75272616 MS.gene02580:CDS
TTGCTTGATTTCTTAAACGC+CGG 0.472258 3.2:-75274560 MS.gene02580:CDS
AGGAGGAGGTAGTGATTTGG+TGG 0.473290 3.2:+75274862 None:intergenic
ACATGGAAGATGAACTTTGT+TGG 0.476317 3.2:-75272599 MS.gene02580:CDS
AGGTAAGGATAGTTCTTGTC+GGG 0.479365 3.2:+75274748 None:intergenic
CAGCGGAAGGTTTGACCGGT+GGG 0.483622 3.2:+75274716 None:intergenic
ACTTATTTAGGTGAAGTTGA+AGG 0.484673 3.2:-75274347 MS.gene02580:CDS
GAAGGTTTGACCGGTGGGGA+AGG 0.484925 3.2:+75274721 None:intergenic
TTCACTGTCCACCTCTGCTT+CGG 0.485170 3.2:+75272650 None:intergenic
GTGAAGTTTCTGTGTCAACT+TGG 0.485616 3.2:+75273207 None:intergenic
TGGAGGGAGATTGGGAGTGA+AGG 0.485854 3.2:+75274603 None:intergenic
GTTGAAGGTAGAAGAGGAGG+AGG 0.492232 3.2:+75274848 None:intergenic
TGAACTCTTAGTAGAAATCA+TGG 0.493783 3.2:-75272673 MS.gene02580:CDS
AACTGAATCAAGCATTCAAA+GGG 0.495318 3.2:+75274437 None:intergenic
GCTTTATTCTCTTCGCACAT+TGG 0.497338 3.2:-75274090 MS.gene02580:CDS
TTGAGAGGTTGGTGGAGTGG+CGG 0.498308 3.2:+75274801 None:intergenic
CTGTTGATGTTCATGTTTGG+CGG 0.502808 3.2:-75273965 MS.gene02580:CDS
AACTTGGAACCTGCAAGCTC+GGG 0.516598 3.2:+75273223 None:intergenic
CTTTCCAAGTTACCTGGAGT+TGG 0.517490 3.2:-75274044 MS.gene02580:CDS
GAGGTAAGGATAGTTCTTGT+CGG 0.518734 3.2:+75274747 None:intergenic
GAAGATGTTTGAGGGAAATG+AGG 0.519541 3.2:+75274648 None:intergenic
TTTCCAGCGGAAGGTTTGAC+CGG 0.521741 3.2:+75274712 None:intergenic
CCCTCCTACCTTTACACTTG+AGG 0.524416 3.2:-75273090 MS.gene02580:CDS
TAAAACAGCTTGAGCCCAGC+CGG 0.524454 3.2:+75273141 None:intergenic
CTTATTTAGGTGAAGTTGAA+GGG 0.524953 3.2:-75274346 MS.gene02580:intron
TCCCTCAAACATCTTCAAAA+CGG 0.526912 3.2:-75274641 MS.gene02580:CDS
AAACTGAATCAAGCATTCAA+AGG 0.527556 3.2:+75274436 None:intergenic
CCACCAACCTCTCAAAATCC+CGG 0.529694 3.2:-75274793 MS.gene02580:CDS
TGTTGAGAGGGATCCATACC+CGG 0.530592 3.2:+75274774 None:intergenic
AGTATGGTAAATATGCCGGC+TGG 0.531143 3.2:-75273156 MS.gene02580:CDS
GGTGTTGAAGGTAGAAGAGG+AGG 0.531547 3.2:+75274845 None:intergenic
CCCTCAAGTGTAAAGGTAGG+AGG 0.533406 3.2:+75273089 None:intergenic
AGAGGTGGACAGTGAACTAC+TGG 0.535788 3.2:-75272643 MS.gene02580:CDS
GGAGGGAGATTGGGAGTGAA+GGG 0.536641 3.2:+75274604 None:intergenic
GTGTTTCTCTTGCTGACACG+TGG 0.537150 3.2:-75274538 MS.gene02580:CDS
ACAAAGTATGGTAAATATGC+CGG 0.537281 3.2:-75273160 MS.gene02580:CDS
TCTTGTCGGGTTATGTTGAG+AGG 0.537793 3.2:+75274761 None:intergenic
CCAGCGGAAGGTTTGACCGG+TGG 0.538070 3.2:+75274715 None:intergenic
GCAACATTTGAGTGGTGCTA+GGG 0.540107 3.2:-75274474 MS.gene02580:CDS
ATGTTTGAGGGAAATGAGGT+GGG 0.544232 3.2:+75274652 None:intergenic
CCACCGGTCAAACCTTCCGC+TGG 0.544466 3.2:-75274715 MS.gene02580:CDS
TCTGAACTTTCCAAGTTACC+TGG 0.547907 3.2:-75274050 MS.gene02580:CDS
GGATTCCGATGAAAGATTTG+CGG 0.549689 3.2:-75274504 MS.gene02580:CDS
TGCAATCAAAGCCTGAAGGT+GGG 0.559250 3.2:-75274121 MS.gene02580:CDS
GCAATCAAAGCCTGAAGGTG+GGG 0.559780 3.2:-75274120 MS.gene02580:CDS
CAGTTCCGCAAATCTTTCAT+CGG 0.560607 3.2:+75274499 None:intergenic
CTCCAACGATGATTGCAAAA+CGG 0.563244 3.2:-75274585 MS.gene02580:CDS
TGTTGATGTTCATGTTTGGC+GGG 0.563445 3.2:-75273964 MS.gene02580:intron
GTTGAGAGGGATCCATACCC+GGG 0.563985 3.2:+75274775 None:intergenic
TTTGTTGGCAGAGTAAATAG+TGG 0.564187 3.2:-75272584 None:intergenic
ACCTGGAGTTGGTCCTAAAG+TGG 0.565307 3.2:-75274033 MS.gene02580:CDS
GAAAACAGCGAAGAAGAAGC+TGG 0.566035 3.2:-75273034 MS.gene02580:intron
GGTGGGGAAGGTGAGAGGTA+AGG 0.569427 3.2:+75274733 None:intergenic
TTGCAATCAAAGCCTGAAGG+TGG 0.570829 3.2:-75274122 MS.gene02580:CDS
GTATGGTAAATATGCCGGCT+GGG 0.571044 3.2:-75273155 MS.gene02580:CDS
CACCAACCTCTCAAAATCCC+GGG 0.574837 3.2:-75274792 MS.gene02580:CDS
TGACCGGTGGGGAAGGTGAG+AGG 0.575831 3.2:+75274728 None:intergenic
AATCATGGCCGAAGCAGAGG+TGG 0.576240 3.2:-75272658 MS.gene02580:CDS
TTACCTCTCACCTTCCCCAC+CGG 0.576560 3.2:-75274731 MS.gene02580:CDS
CTTGTCGGGTTATGTTGAGA+GGG 0.578835 3.2:+75274762 None:intergenic
AGAAATCATGGCCGAAGCAG+AGG 0.585625 3.2:-75272661 MS.gene02580:CDS
TTCTCTTGCTGACACGTGGA+AGG 0.591357 3.2:-75274534 MS.gene02580:CDS
TTGGTGTCCCTCAAGTGTAA+AGG 0.593031 3.2:+75273082 None:intergenic
ACTTCACAGTCGTGTTGCAG+AGG 0.596405 3.2:-75273191 MS.gene02580:CDS
AACATGAACATCAACAGGAA+TGG 0.597125 3.2:+75273971 None:intergenic
AGCGGAAGGTTTGACCGGTG+GGG 0.603850 3.2:+75274717 None:intergenic
GGAGGAGGTAGTGATTTGGT+GGG 0.604507 3.2:+75274863 None:intergenic
GCCACTTTAGGACCAACTCC+AGG 0.606013 3.2:+75274032 None:intergenic
GGTGGTGTTGAAGGTAGAAG+AGG 0.606591 3.2:+75274842 None:intergenic
ACGACGCCGGTGAATTGAGA+AGG 0.607725 3.2:+75274680 None:intergenic
GCCGGTGAATTGAGAAGGAG+CGG 0.615116 3.2:+75274685 None:intergenic
CCTCAAGTGTAAAGGTAGGA+GGG 0.619016 3.2:+75273090 None:intergenic
ACCGCTCCTTCTCAATTCAC+CGG 0.631136 3.2:-75274686 MS.gene02580:CDS
GAGGTGGGAGCCAACGACGC+CGG 0.631246 3.2:+75274667 None:intergenic
GATGTTTGAGGGAAATGAGG+TGG 0.643569 3.2:+75274651 None:intergenic
CGTGTCAGCAAGAGAAACAC+CGG 0.651572 3.2:+75274541 None:intergenic
GAACATCAACAGGAATGGCA+TGG 0.655759 3.2:+75273976 None:intergenic
GCTTTGCAATCAAAGCCTGA+AGG 0.659391 3.2:-75274125 MS.gene02580:CDS
TGTCCCTCAAGTGTAAAGGT+AGG 0.665958 3.2:+75273086 None:intergenic
GAACTGGCGCAACATTTGAG+TGG 0.700408 3.2:-75274482 MS.gene02580:CDS
GGTGGACAGTGAACTACTGG+CGG 0.704341 3.2:-75272640 MS.gene02580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAATCTAATTAACAG+AGG + chr3.2:75274081-75274100 None:intergenic 15.0%
!! TTCTAATGTTGTAATAAAAT+TGG - chr3.2:75273586-75273605 MS.gene02580:intron 15.0%
!!! TGTTGTATTATTTTTTTCAT+GGG - chr3.2:75274018-75274037 MS.gene02580:CDS 15.0%
!!! TTGTTGTATTATTTTTTTCA+TGG - chr3.2:75274017-75274036 MS.gene02580:CDS 15.0%
!! AAACTATAAGAAAAACTGTT+AGG - chr3.2:75273886-75273905 MS.gene02580:intron 20.0%
!! TATTAGTAGAATTACGAAAA+TGG - chr3.2:75273078-75273097 MS.gene02580:CDS 20.0%
!! TATTTGAATATATAGCAAGA+CGG - chr3.2:75273637-75273656 MS.gene02580:intron 20.0%
!!! GTTGTATTATTTTTTTCATG+GGG - chr3.2:75274019-75274038 MS.gene02580:CDS 20.0%
! ATTTGAATATATAGCAAGAC+GGG - chr3.2:75273638-75273657 MS.gene02580:intron 25.0%
! CAAGATATTGAGATAAAACA+TGG - chr3.2:75274625-75274644 MS.gene02580:CDS 25.0%
! GTTCTATCATAAACCTTATT+TGG + chr3.2:75273939-75273958 None:intergenic 25.0%
! GTTTCATTACAGATTTAGAA+GGG - chr3.2:75274048-75274067 MS.gene02580:CDS 25.0%
! TAAACTTGATGTTATAACGT+AGG - chr3.2:75274482-75274501 MS.gene02580:CDS 25.0%
! TTGTTACCTATCAATAAGAT+GGG - chr3.2:75273559-75273578 MS.gene02580:intron 25.0%
! TTTGTTACCTATCAATAAGA+TGG - chr3.2:75273558-75273577 MS.gene02580:intron 25.0%
!! CTTTTATCATTTTCAAACTG+GGG - chr3.2:75274200-75274219 MS.gene02580:intron 25.0%
!! GCTTTTATCATTTTCAAACT+GGG - chr3.2:75274199-75274218 MS.gene02580:intron 25.0%
!! GTTTTTCTTATAGTTTTTCC+AGG + chr3.2:75273882-75273901 None:intergenic 25.0%
!! TGAAGTATTTAAGCAAAAGT+AGG + chr3.2:75273536-75273555 None:intergenic 25.0%
!! TGCTTTTATCATTTTCAAAC+TGG - chr3.2:75274198-75274217 MS.gene02580:intron 25.0%
!!! ATCTTGTAGAGTTTTATGAT+TGG - chr3.2:75274150-75274169 MS.gene02580:CDS 25.0%
!!! ATTATTTTTTTCCGTGGTTT+AGG - chr3.2:75273676-75273695 MS.gene02580:intron 25.0%
AAACTGAATCAAGCATTCAA+AGG + chr3.2:75273038-75273057 None:intergenic 30.0%
AAATTGCCCATCTTATTGAT+AGG + chr3.2:75273568-75273587 None:intergenic 30.0%
AACTGAATCAAGCATTCAAA+GGG + chr3.2:75273037-75273056 None:intergenic 30.0%
AACTGTTAGGAAATATGTAG+AGG - chr3.2:75273899-75273918 MS.gene02580:intron 30.0%
ACAAAGTATGGTAAATATGC+CGG - chr3.2:75274311-75274330 MS.gene02580:intron 30.0%
ACTTATTTAGGTGAAGTTGA+AGG - chr3.2:75273124-75273143 MS.gene02580:CDS 30.0%
ATATGTAGAGGTTAATGAGT+TGG - chr3.2:75273911-75273930 MS.gene02580:intron 30.0%
CTTATTTAGGTGAAGTTGAA+GGG - chr3.2:75273125-75273144 MS.gene02580:CDS 30.0%
GATAGGGCTAAATATATAAC+TGG - chr3.2:75273313-75273332 MS.gene02580:intron 30.0%
GGAATGGTAAGAATATGATT+AGG - chr3.2:75273697-75273716 MS.gene02580:intron 30.0%
GGTTTCATTACAGATTTAGA+AGG - chr3.2:75274047-75274066 MS.gene02580:CDS 30.0%
GTAGAAAAGTGGTATAAAAC+AGG - chr3.2:75273759-75273778 MS.gene02580:intron 30.0%
TGAACTCTTAGTAGAAATCA+TGG - chr3.2:75274798-75274817 MS.gene02580:CDS 30.0%
! TAATGAGTTGGATCCAAATA+AGG - chr3.2:75273923-75273942 MS.gene02580:intron 30.0%
!! TTATACCACTTTTCTACTGT+AGG + chr3.2:75273756-75273775 None:intergenic 30.0%
!!! GTATTATTTTTTTCATGGGG+TGG - chr3.2:75274022-75274041 MS.gene02580:CDS 30.0%
!!! GTTGTCATTATTTTTTTCCG+TGG - chr3.2:75273670-75273689 MS.gene02580:intron 30.0%
!!! TGGTTGCTATTTTCTTGATA+GGG - chr3.2:75273297-75273316 MS.gene02580:intron 30.0%
AACATGAACATCAACAGGAA+TGG + chr3.2:75273503-75273522 None:intergenic 35.0%
AAGTGGTATAAAACAGGCTT+AGG - chr3.2:75273765-75273784 MS.gene02580:intron 35.0%
ACATGGAAGATGAACTTTGT+TGG - chr3.2:75274872-75274891 MS.gene02580:CDS 35.0%
ACGAAGAGTAGATTAGATGT+AGG - chr3.2:75273829-75273848 MS.gene02580:intron 35.0%
GTTCAGAAACTAATGAAAGC+TGG + chr3.2:75273180-75273199 None:intergenic 35.0%
TCCCTCAAACATCTTCAAAA+CGG - chr3.2:75272830-75272849 MS.gene02580:intron 35.0%
TCTGTGTCAATTGAAGGTTA+GGG + chr3.2:75274769-75274788 None:intergenic 35.0%
TCTTCGTACTACAACATCTA+CGG + chr3.2:75273816-75273835 None:intergenic 35.0%
TGCTATCATTTATGCATGAC+TGG - chr3.2:75274120-75274139 MS.gene02580:CDS 35.0%
TTCAATCAGAGTGAGATCTA+CGG - chr3.2:75274549-75274568 MS.gene02580:CDS 35.0%
TTCCTGTTGATGTTCATGTT+TGG - chr3.2:75273503-75273522 MS.gene02580:intron 35.0%
TTCTTACCATTCCTAAACCA+CGG + chr3.2:75273690-75273709 None:intergenic 35.0%
TTGATTACGTTTCGTCTCTT+GGG - chr3.2:75273101-75273120 MS.gene02580:CDS 35.0%
TTGCTTGATTTCTTAAACGC+CGG - chr3.2:75272911-75272930 MS.gene02580:intron 35.0%
! CTCGGGTAAGATATACTTTT+GGG + chr3.2:75274234-75274253 None:intergenic 35.0%
! GAGGCTTTTGTAACAAAGTA+TGG - chr3.2:75274299-75274318 MS.gene02580:intron 35.0%
!! TTTTGGTTACAGGTTAGGTT+AGG - chr3.2:75273219-75273238 MS.gene02580:CDS 35.0%
!!! GTGGTTGCTATTTTCTTGAT+AGG - chr3.2:75273296-75273315 MS.gene02580:intron 35.0%
!!! TATTTTTTTCATGGGGTGGA+GGG - chr3.2:75274026-75274045 MS.gene02580:CDS 35.0%
!!! TTATTTTTTTCATGGGGTGG+AGG - chr3.2:75274025-75274044 MS.gene02580:CDS 35.0%
!!! TTTTTTCCGTGGTTTAGGAA+TGG - chr3.2:75273681-75273700 MS.gene02580:intron 35.0%
ACACCATTAGAGAGAGAGTT+GGG - chr3.2:75273724-75273743 MS.gene02580:intron 40.0%
AGGTAAGGATAGTTCTTGTC+GGG + chr3.2:75272726-75272745 None:intergenic 40.0%
AGTCAAATCAGAAGAGGTAG+TGG - chr3.2:75273852-75273871 MS.gene02580:intron 40.0%
ATGTTTGAGGGAAATGAGGT+GGG + chr3.2:75272822-75272841 None:intergenic 40.0%
CAGTTCCGCAAATCTTTCAT+CGG + chr3.2:75272975-75272994 None:intergenic 40.0%
CTAACCTTCAATTGACACAG+AGG - chr3.2:75274768-75274787 MS.gene02580:CDS 40.0%
CTCCAACGATGATTGCAAAA+CGG - chr3.2:75272886-75272905 MS.gene02580:intron 40.0%
CTCTGTGTCAATTGAAGGTT+AGG + chr3.2:75274770-75274789 None:intergenic 40.0%
CTGTTGATGTTCATGTTTGG+CGG - chr3.2:75273506-75273525 MS.gene02580:intron 40.0%
CTTCGTACTACAACATCTAC+GGG + chr3.2:75273815-75273834 None:intergenic 40.0%
GAAGATGTTTGAGGGAAATG+AGG + chr3.2:75272826-75272845 None:intergenic 40.0%
GAGGTAAGGATAGTTCTTGT+CGG + chr3.2:75272727-75272746 None:intergenic 40.0%
GGATTCCGATGAAAGATTTG+CGG - chr3.2:75272967-75272986 MS.gene02580:intron 40.0%
GTGAAGTTTCTGTGTCAACT+TGG + chr3.2:75274267-75274286 None:intergenic 40.0%
GTTGATTACGTTTCGTCTCT+TGG - chr3.2:75273100-75273119 MS.gene02580:CDS 40.0%
GTTTCGTGTGAATGTTAACG+TGG - chr3.2:75273277-75273296 MS.gene02580:intron 40.0%
TAGCTCCTACAGTAGAAAAG+TGG - chr3.2:75273748-75273767 MS.gene02580:intron 40.0%
TCAATCAGAGTGAGATCTAC+GGG - chr3.2:75274550-75274569 MS.gene02580:CDS 40.0%
TCGTCTCTTGGGACTTATTT+AGG - chr3.2:75273112-75273131 MS.gene02580:CDS 40.0%
TCTGAACTTTCCAAGTTACC+TGG - chr3.2:75273421-75273440 MS.gene02580:intron 40.0%
TGGTATAAAACAGGCTTAGG+TGG - chr3.2:75273768-75273787 MS.gene02580:intron 40.0%
TGTAGGAGTCAAATCAGAAG+AGG - chr3.2:75273846-75273865 MS.gene02580:intron 40.0%
TGTTGATGTTCATGTTTGGC+GGG - chr3.2:75273507-75273526 MS.gene02580:intron 40.0%
! AATGAAAGCTGGTTCAGAGT+AGG + chr3.2:75273169-75273188 None:intergenic 40.0%
! CTGTTTTCTTCCATCTTTGC+GGG + chr3.2:75274425-75274444 None:intergenic 40.0%
! GCTCGGGTAAGATATACTTT+TGG + chr3.2:75274235-75274254 None:intergenic 40.0%
! GCTTTATTCTCTTCGCACAT+TGG - chr3.2:75273381-75273400 MS.gene02580:intron 40.0%
! GTTTTGCAATCATCGTTGGA+GGG + chr3.2:75272887-75272906 None:intergenic 40.0%
!! GCTGTTTTCTTCCATCTTTG+CGG + chr3.2:75274426-75274445 None:intergenic 40.0%
!!! GCCGTTTTGAAGATGTTTGA+GGG + chr3.2:75272834-75272853 None:intergenic 40.0%
AACGTAGGCGTTCGAATATG+CGG - chr3.2:75274497-75274516 MS.gene02580:CDS 45.0%
AAGAGGAGGAGGTAGTGATT+TGG + chr3.2:75272615-75272634 None:intergenic 45.0%
AATCATCGTTGGAGGGAGAT+TGG + chr3.2:75272880-75272899 None:intergenic 45.0%
ACCTTCAATTGACACAGAGG+TGG - chr3.2:75274771-75274790 MS.gene02580:CDS 45.0%
ACTGCTGAGTGATGAATGAG+GGG - chr3.2:75274655-75274674 MS.gene02580:CDS 45.0%
AGTATGGTAAATATGCCGGC+TGG - chr3.2:75274315-75274334 MS.gene02580:intron 45.0%
ATCATCGTTGGAGGGAGATT+GGG + chr3.2:75272879-75272898 None:intergenic 45.0%
CACCATTAGAGAGAGAGTTG+GGG - chr3.2:75273725-75273744 MS.gene02580:intron 45.0%
CACTGCTGAGTGATGAATGA+GGG - chr3.2:75274654-75274673 MS.gene02580:CDS 45.0%
CCTCAAGTGTAAAGGTAGGA+GGG + chr3.2:75274384-75274403 None:intergenic 45.0%
CCTCCTACCTTTACACTTGA+GGG - chr3.2:75274382-75274401 MS.gene02580:CDS 45.0%
CGATGAAAGATTTGCGGAAC+TGG - chr3.2:75272973-75272992 MS.gene02580:intron 45.0%
CGCCAAACATGAACATCAAC+AGG + chr3.2:75273508-75273527 None:intergenic 45.0%
CTTGTCGGGTTATGTTGAGA+GGG + chr3.2:75272712-75272731 None:intergenic 45.0%
CTTTCCAAGTTACCTGGAGT+TGG - chr3.2:75273427-75273446 MS.gene02580:intron 45.0%
GAAAACAGCGAAGAAGAAGC+TGG - chr3.2:75274437-75274456 MS.gene02580:CDS 45.0%
GAACATCAACAGGAATGGCA+TGG + chr3.2:75273498-75273517 None:intergenic 45.0%
GACACCATTAGAGAGAGAGT+TGG - chr3.2:75273723-75273742 MS.gene02580:intron 45.0%
GATGTTTGAGGGAAATGAGG+TGG + chr3.2:75272823-75272842 None:intergenic 45.0%
GCTTTGCAATCAAAGCCTGA+AGG - chr3.2:75273346-75273365 MS.gene02580:intron 45.0%
TACCCCAACTCTCTCTCTAA+TGG + chr3.2:75273730-75273749 None:intergenic 45.0%
TATATCTTACCCGAGCTTGC+AGG - chr3.2:75274239-75274258 MS.gene02580:intron 45.0%
TCACTGCTGAGTGATGAATG+AGG - chr3.2:75274653-75274672 MS.gene02580:CDS 45.0%
TCCACCTCTGTGTCAATTGA+AGG + chr3.2:75274775-75274794 None:intergenic 45.0%
TCTTGTCGGGTTATGTTGAG+AGG + chr3.2:75272713-75272732 None:intergenic 45.0%
TGCAATCAAAGCCTGAAGGT+GGG - chr3.2:75273350-75273369 MS.gene02580:intron 45.0%
TGCTGAGTTGCCTTCACAAA+AGG - chr3.2:75274358-75274377 MS.gene02580:CDS 45.0%
TGTCCCTCAAGTGTAAAGGT+AGG + chr3.2:75274388-75274407 None:intergenic 45.0%
TTGCAATCAAAGCCTGAAGG+TGG - chr3.2:75273349-75273368 MS.gene02580:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr3.2:75273992-75274011 None:intergenic 45.0%
! ATCTACGGGTTGTGAGTCTA+AGG - chr3.2:75274564-75274583 MS.gene02580:CDS 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr3.2:75273993-75274012 None:intergenic 45.0%
! CGTTTTGCAATCATCGTTGG+AGG + chr3.2:75272888-75272907 None:intergenic 45.0%
! GCAACATTTGAGTGGTGCTA+GGG - chr3.2:75272997-75273016 MS.gene02580:intron 45.0%
! GCTATACAAGCAGCCACTTT+AGG + chr3.2:75273454-75273473 None:intergenic 45.0%
! GTATGGTAAATATGCCGGCT+GGG - chr3.2:75274316-75274335 MS.gene02580:intron 45.0%
! TTGGTGTCCCTCAAGTGTAA+AGG + chr3.2:75274392-75274411 None:intergenic 45.0%
!!! ATTTTGAGAGGTTGGTGGAG+TGG + chr3.2:75272676-75272695 None:intergenic 45.0%
!!! CAACTAAGAGACGCTGGTTT+TGG - chr3.2:75273202-75273221 MS.gene02580:CDS 45.0%
!!! CGCCGTTTTGAAGATGTTTG+AGG + chr3.2:75272835-75272854 None:intergenic 45.0%
!!! GCTGGTTTTGGTTACAGGTT+AGG - chr3.2:75273214-75273233 MS.gene02580:CDS 45.0%
!!! TGCCGTTTTGCAATCATCGT+TGG + chr3.2:75272891-75272910 None:intergenic 45.0%
AACTTGGAACCTGCAAGCTC+GGG + chr3.2:75274251-75274270 None:intergenic 50.0%
ACCGCTCCTTCTCAATTCAC+CGG - chr3.2:75272785-75272804 MS.gene02580:intron 50.0%
ACCTCTCAAAATCCCGGGTA+TGG - chr3.2:75272684-75272703 MS.gene02580:CDS 50.0%
ACTTCACAGTCGTGTTGCAG+AGG - chr3.2:75274280-75274299 MS.gene02580:intron 50.0%
AGAAATCATGGCCGAAGCAG+AGG - chr3.2:75274810-75274829 MS.gene02580:CDS 50.0%
AGAGGTGGACAGTGAACTAC+TGG - chr3.2:75274828-75274847 MS.gene02580:CDS 50.0%
AGGACCAACTCCAGGTAACT+TGG + chr3.2:75273434-75273453 None:intergenic 50.0%
CAACTTGGAACCTGCAAGCT+CGG + chr3.2:75274252-75274271 None:intergenic 50.0%
CACCAACCTCTCAAAATCCC+GGG - chr3.2:75272679-75272698 MS.gene02580:CDS 50.0%
CCACCAACCTCTCAAAATCC+CGG - chr3.2:75272678-75272697 MS.gene02580:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr3.2:75273991-75274010 MS.gene02580:CDS 50.0%
CCCTCAAGTGTAAAGGTAGG+AGG + chr3.2:75274385-75274404 None:intergenic 50.0%
CCCTCCTACCTTTACACTTG+AGG - chr3.2:75274381-75274400 MS.gene02580:CDS 50.0%
CGCAACATTTGAGTGGTGCT+AGG - chr3.2:75272996-75273015 MS.gene02580:intron 50.0%
CGTGTCAGCAAGAGAAACAC+CGG + chr3.2:75272933-75272952 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr3.2:75273988-75274007 None:intergenic 50.0%
CTTTGCGGGATTCTTCTGCT+TGG + chr3.2:75274411-75274430 None:intergenic 50.0%
GAACAGCAACTAAGAGACGC+TGG - chr3.2:75273196-75273215 MS.gene02580:CDS 50.0%
GAACTGGCGCAACATTTGAG+TGG - chr3.2:75272989-75273008 MS.gene02580:intron 50.0%
GCAATCAAAGCCTGAAGGTG+GGG - chr3.2:75273351-75273370 MS.gene02580:intron 50.0%
GCAGAAGAATCCCGCAAAGA+TGG - chr3.2:75274412-75274431 MS.gene02580:CDS 50.0%
GCTTAGGTGGTTTGAGCATG+TGG - chr3.2:75273781-75273800 MS.gene02580:intron 50.0%
GTGTTTCTCTTGCTGACACG+TGG - chr3.2:75272933-75272952 MS.gene02580:intron 50.0%
GTTGAAGGTAGAAGAGGAGG+AGG + chr3.2:75272626-75272645 None:intergenic 50.0%
TAAAACAGCTTGAGCCCAGC+CGG + chr3.2:75274333-75274352 None:intergenic 50.0%
TGTTGAGAGGGATCCATACC+CGG + chr3.2:75272700-75272719 None:intergenic 50.0%
TTCACTGTCCACCTCTGCTT+CGG + chr3.2:75274824-75274843 None:intergenic 50.0%
TTCTCTTGCTGACACGTGGA+AGG - chr3.2:75272937-75272956 MS.gene02580:intron 50.0%
TTTCCAGCGGAAGGTTTGAC+CGG + chr3.2:75272762-75272781 None:intergenic 50.0%
! AAGGAGCGGTGTTTTTCCAG+CGG + chr3.2:75272775-75272794 None:intergenic 50.0%
! ACCTGGAGTTGGTCCTAAAG+TGG - chr3.2:75273438-75273457 MS.gene02580:intron 50.0%
! AGGAGGAGGTAGTGATTTGG+TGG + chr3.2:75272612-75272631 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr3.2:75273994-75274013 None:intergenic 50.0%
! GGTGGTGTTGAAGGTAGAAG+AGG + chr3.2:75272632-75272651 None:intergenic 50.0%
! GGTGTTGAAGGTAGAAGAGG+AGG + chr3.2:75272629-75272648 None:intergenic 50.0%
! TCCATACCCGGGATTTTGAG+AGG + chr3.2:75272688-75272707 None:intergenic 50.0%
! TGAACTACTGGCGGATGACT+TGG - chr3.2:75274840-75274859 MS.gene02580:CDS 50.0%
!! AGAAGAGGTAGTGGAAGACC+TGG - chr3.2:75273861-75273880 MS.gene02580:intron 50.0%
!! GGAGGAGGTAGTGATTTGGT+GGG + chr3.2:75272611-75272630 None:intergenic 50.0%
!! TACCCGGGATTTTGAGAGGT+TGG + chr3.2:75272684-75272703 None:intergenic 50.0%
!! TGACACGTGGAAGGTGTTCT+CGG - chr3.2:75272946-75272965 MS.gene02580:intron 50.0%
!! TGACTTGGTCGTTGCGAACA+TGG - chr3.2:75274855-75274874 MS.gene02580:CDS 50.0%
!!! GAGACGCTGGTTTTGGTTAC+AGG - chr3.2:75273209-75273228 MS.gene02580:CDS 50.0%
AATCATGGCCGAAGCAGAGG+TGG - chr3.2:75274813-75274832 MS.gene02580:CDS 55.0%
ACGACGCCGGTGAATTGAGA+AGG + chr3.2:75272794-75272813 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr3.2:75273980-75273999 None:intergenic 55.0%
AGCCATTCTTCCCCACCTTC+AGG + chr3.2:75273364-75273383 None:intergenic 55.0%
AGCCTGAAGGTGGGGAAGAA+TGG - chr3.2:75273359-75273378 MS.gene02580:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr3.2:75273979-75273998 MS.gene02580:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr3.2:75273986-75274005 MS.gene02580:CDS 55.0%
GCCGGTGAATTGAGAAGGAG+CGG + chr3.2:75272789-75272808 None:intergenic 55.0%
GGAGGGAGATTGGGAGTGAA+GGG + chr3.2:75272870-75272889 None:intergenic 55.0%
GGTGGACAGTGAACTACTGG+CGG - chr3.2:75274831-75274850 MS.gene02580:CDS 55.0%
GTTGAGAGGGATCCATACCC+GGG + chr3.2:75272699-75272718 None:intergenic 55.0%
TCTCAATTCACCGGCGTCGT+TGG - chr3.2:75272794-75272813 MS.gene02580:intron 55.0%
TGGAGGGAGATTGGGAGTGA+AGG + chr3.2:75272871-75272890 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr3.2:75273980-75273999 MS.gene02580:CDS 55.0%
TTACCTCTCACCTTCCCCAC+CGG - chr3.2:75272740-75272759 MS.gene02580:intron 55.0%
! AGCGGTGTTTTTCCAGCGGA+AGG + chr3.2:75272771-75272790 None:intergenic 55.0%
! GAGTCTAAGGCGATACACGC+TGG - chr3.2:75274577-75274596 MS.gene02580:CDS 55.0%
! GAGTGATGAATGAGGGGTGC+AGG - chr3.2:75274661-75274680 MS.gene02580:CDS 55.0%
! GGTAGGAGGGCCTTTTGTGA+AGG + chr3.2:75274371-75274390 None:intergenic 55.0%
!! CCGGGATTTTGAGAGGTTGG+TGG + chr3.2:75272681-75272700 None:intergenic 55.0%
!! GCCACTTTAGGACCAACTCC+AGG + chr3.2:75273442-75273461 None:intergenic 55.0%
!! GTTTGGGTTTGGGGTGTTGG+TGG + chr3.2:75272650-75272669 None:intergenic 55.0%
!! TGGGGTGTTGGTGGTGTTGA+AGG + chr3.2:75272641-75272660 None:intergenic 55.0%
!! TTGAGAGGTTGGTGGAGTGG+CGG + chr3.2:75272673-75272692 None:intergenic 55.0%
AGCGGAAGGTTTGACCGGTG+GGG + chr3.2:75272757-75272776 None:intergenic 60.0%
CAGCGGAAGGTTTGACCGGT+GGG + chr3.2:75272758-75272777 None:intergenic 60.0%
GAAGGTTTGACCGGTGGGGA+AGG + chr3.2:75272753-75272772 None:intergenic 60.0%
GCGATACACGCTGGAGACTC+AGG - chr3.2:75274586-75274605 MS.gene02580:CDS 60.0%
GGTGGGGAAGGTGAGAGGTA+AGG + chr3.2:75272741-75272760 None:intergenic 60.0%
! CGGGTTTGGGTTTGGGGTGT+TGG + chr3.2:75272653-75272672 None:intergenic 60.0%
!! GAGTGGCGGGTTTGGGTTTG+GGG + chr3.2:75272659-75272678 None:intergenic 60.0%
!! GGAGTGGCGGGTTTGGGTTT+GGG + chr3.2:75272660-75272679 None:intergenic 60.0%
!! GTTGGTGGAGTGGCGGGTTT+GGG + chr3.2:75272666-75272685 None:intergenic 60.0%
!! TGAGAGGTTGGTGGAGTGGC+GGG + chr3.2:75272672-75272691 None:intergenic 60.0%
!! TGGAGTGGCGGGTTTGGGTT+TGG + chr3.2:75272661-75272680 None:intergenic 60.0%
CCACCGGTCAAACCTTCCGC+TGG - chr3.2:75272756-75272775 MS.gene02580:intron 65.0%
CCAGCGGAAGGTTTGACCGG+TGG + chr3.2:75272759-75272778 None:intergenic 65.0%
TGACCGGTGGGGAAGGTGAG+AGG + chr3.2:75272746-75272765 None:intergenic 65.0%
!! GGTTGGTGGAGTGGCGGGTT+TGG + chr3.2:75272667-75272686 None:intergenic 65.0%
GAGGTGGGAGCCAACGACGC+CGG + chr3.2:75272807-75272826 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 75272587 75274906 75272587 ID=MS.gene02580
chr3.2 mRNA 75272587 75274906 75272587 ID=MS.gene02580.t1;Parent=MS.gene02580
chr3.2 exon 75274347 75274906 75274347 ID=MS.gene02580.t1.exon1;Parent=MS.gene02580.t1
chr3.2 CDS 75274347 75274906 75274347 ID=cds.MS.gene02580.t1;Parent=MS.gene02580.t1
chr3.2 exon 75273965 75274175 75273965 ID=MS.gene02580.t1.exon2;Parent=MS.gene02580.t1
chr3.2 CDS 75273965 75274175 75273965 ID=cds.MS.gene02580.t1;Parent=MS.gene02580.t1
chr3.2 exon 75273035 75273266 75273035 ID=MS.gene02580.t1.exon3;Parent=MS.gene02580.t1
chr3.2 CDS 75273035 75273266 75273035 ID=cds.MS.gene02580.t1;Parent=MS.gene02580.t1
chr3.2 exon 75272587 75272705 75272587 ID=MS.gene02580.t1.exon4;Parent=MS.gene02580.t1
chr3.2 CDS 75272587 75272705 75272587 ID=cds.MS.gene02580.t1;Parent=MS.gene02580.t1
Gene Sequence

>MS.gene02580

ATGACGAAGAGAAAAAGATCACCCACCAAATCACTACCTCCTCCTCTTCTACCTTCAACACCACCAACACCCCAAACCCAAACCCGCCACTCCACCAACCTCTCAAAATCCCGGGTATGGATCCCTCTCAACATAACCCGACAAGAACTATCCTTACCTCTCACCTTCCCCACCGGTCAAACCTTCCGCTGGAAAAACACCGCTCCTTCTCAATTCACCGGCGTCGTTGGCTCCCACCTCATTTCCCTCAAACATCTTCAAAACGGCGACGTTTGCTACACCCTTCACTCCCAATCTCCCTCCAACGATGATTGCAAAACGGCATTGCTTGATTTCTTAAACGCCGGTGTTTCTCTTGCTGACACGTGGAAGGTGTTCTCGGATTCCGATGAAAGATTTGCGGAACTGGCGCAACATTTGAGTGGTGCTAGGGTTTTGAGACAAGATCCCTTTGAATGCTTGATTCAGTTTATGTGTTCTTCTAATAATCATATTAGTAGAATTACGAAAATGGTTGATTACGTTTCGTCTCTTGGGACTTATTTAGGTGAAGTTGAAGGGTTTGATTTTCATGCTTTTCCTACTCTGAACCAGCTTTCATTAGTTTCTGAACAGCAACTAAGAGACGCTGGTTTTGGTTACAGGTTAGGTTAGGTTTAGTTTATTCAATAACTATAATAACTGTTATTAGTTTCGTGTGAATGTTAACGTGGTTGCTATTTTCTTGATAGGGCTAAATATATAACTGGCACTGTAAATGCTTTGCAATCAAAGCCTGAAGGTGGGGAAGAATGGCTTTATTCTCTTCGCACATTGGAGCTTGAAGATGTAATATCTGAACTTTCCAAGTTACCTGGAGTTGGTCCTAAAGTGGCTGCTTGTATAGCTCTTTACTCACTTGATCAGCACCATGCCATTCCTGTTGATGTTCATGTTTGGCGGGTAACCTACTTTTGCTTAAATACTTCAAATTTGTTACCTATCAATAAGATGGGCAATTTCTAATGTTGTAATAAAATTGGATGTGAAAATGTGTAATTTTAGAGAATATATTTGAATATATAGCAAGACGGGTAGATTTATGTTGTCATTATTTTTTTCCGTGGTTTAGGAATGGTAAGAATATGATTAGGAATGACACCATTAGAGAGAGAGTTGGGGTAGCTCCTACAGTAGAAAAGTGGTATAAAACAGGCTTAGGTGGTTTGAGCATGTGGAGAGTAGACCCGTAGATGTTGTAGTACGAAGAGTAGATTAGATGTAGGAGTCAAATCAGAAGAGGTAGTGGAAGACCTGGAAAAACTATAAGAAAAACTGTTAGGAAATATGTAGAGGTTAATGAGTTGGATCCAAATAAGGTTTATGATAGAACATTATGACATAATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTATTATTTTTTTCATGGGGTGGAGGGTTTCATTACAGATTTAGAAGGGTGAATCTCCTCTGTTAATTAGATTATTTTATTTATACGTTTTTTTTTTTTGCTATCATTTATGCATGACTGGTTATCACATCTTGTAGAGTTTTATGATTGGATTGTTGTTTTCTTGAGAGTTAATTTGCTTTTATCATTTTCAAACTGGGGTAAGATTGCCCAAAAGTATATCTTACCCGAGCTTGCAGGTTCCAAGTTGACACAGAAACTTCACAGTCGTGTTGCAGAGGCTTTTGTAACAAAGTATGGTAAATATGCCGGCTGGGCTCAAGCTGTTTTATTTATTGCTGAGTTGCCTTCACAAAAGGCCCTCCTACCTTTACACTTGAGGGACACCAAGCAGAAGAATCCCGCAAAGATGGAAGAAAACAGCGAAGAAGAAGCTGGTAAGAAAATATTTGTAGTCGTTTAAACTTGATGTTATAACGTAGGCGTTCGAATATGCGGCAAATATTTACTATTTTACTTTTTCTTTTTTCAATCAGAGTGAGATCTACGGGTTGTGAGTCTAAGGCGATACACGCTGGAGACTCAGGCGCGACAGACTGCAATCAAGATATTGAGATAAAACATGGTGATATCACTGCTGAGTGATGAATGAGGGGTGCAGGTTCTTCTACTATGCATATTCACTGCTGAGTGATGAATGAGGGGTGCAGGTTTTTCTACTATGCATATTGTTAACAACTCTTTCCCTAACCTTCAATTGACACAGAGGTGGATAATGAACTCTTAGTAGAAATCATGGCCGAAGCAGAGGTGGACAGTGAACTACTGGCGGATGACTTGGTCGTTGCGAACATGGAAGATGAACTTTGTTGGCAGAGTAAATAG

Protein sequence

>MS.gene02580.t1

MTKRKRSPTKSLPPPLLPSTPPTPQTQTRHSTNLSKSRVWIPLNITRQELSLPLTFPTGQTFRWKNTAPSQFTGVVGSHLISLKHLQNGDVCYTLHSQSPSNDDCKTALLDFLNAGVSLADTWKVFSDSDERFAELAQHLSGARVLRQDPFECLIQFMCSSNNHISRITKMVDYVSSLGTYLGEVEGAKYITGTVNALQSKPEGGEEWLYSLRTLELEDVISELSKLPGVGPKVAACIALYSLDQHHAIPVDVHVWRIAQKYILPELAGSKLTQKLHSRVAEAFVTKYGKYAGWAQAVLFIAELPSQKALLPLHLRDTKQKNPAKMEENSEEEAEVDNELLVEIMAEAEVDSELLADDLVVANMEDELCWQSK