AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013797


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013797.t1 MTR_3g088510 86.364 352 20 1 1 324 1 352 0.0 585
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013797.t1 AT1G21710 57.784 334 107 5 7 311 11 339 8.38e-130 377

Find 113 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTCTCTTGGGACTTATTT+AGG 0.186122 3.4:+81458134 MS.gene013797:CDS
CGGGTTTGGGTTTGGGGTGT+TGG 0.199325 3.4:-81457672 None:intergenic
GGAGTGGCGGGTTTGGGTTT+GGG 0.225556 3.4:-81457679 None:intergenic
TGGAGTGGCGGGTTTGGGTT+TGG 0.232265 3.4:-81457680 None:intergenic
GGGTTTGGGTTTGGGGTGTT+GGG 0.248606 3.4:-81457671 None:intergenic
GAGTGGCGGGTTTGGGTTTG+GGG 0.249611 3.4:-81457678 None:intergenic
GTTGGTGGAGTGGCGGGTTT+GGG 0.259029 3.4:-81457685 None:intergenic
GGTTGGTGGAGTGGCGGGTT+TGG 0.265429 3.4:-81457686 None:intergenic
CGATGAAAGATTTGCGGAAC+TGG 0.268100 3.4:+81457995 MS.gene013797:CDS
GGTTTGGGTTTGGGGTGTTG+GGG 0.318307 3.4:-81457670 None:intergenic
GCTATACAAGCAGCCACTTT+AGG 0.318798 3.4:-81458473 None:intergenic
GTTGATTACGTTTCGTCTCT+TGG 0.337618 3.4:+81458122 MS.gene013797:CDS
TATTAGTAGAATCACGAAAA+TGG 0.343310 3.4:+81458100 MS.gene013797:CDS
GCTCGGGTAAGATATACTTT+TGG 0.347590 3.4:-81459286 None:intergenic
AGCCATTCTTCCCCACCTTC+AGG 0.363722 3.4:-81458383 None:intergenic
AATCATCGTTGGAGGGAGAT+TGG 0.385553 3.4:-81457899 None:intergenic
GGTGTTGAAGGTGGAAGAGG+AGG 0.385734 3.4:-81457648 None:intergenic
TATATCTTACCCGAGCTTGC+AGG 0.389581 3.4:+81459293 MS.gene013797:CDS
CGCCAAACATGAACATCAAC+AGG 0.405155 3.4:-81458527 None:intergenic
TTGATTACGTTTCGTCTCTT+GGG 0.411601 3.4:+81458123 MS.gene013797:CDS
TTCCTGTTGATGTTCATGTT+TGG 0.414571 3.4:+81458525 MS.gene013797:CDS
GATAGGGCTAAATATATAAC+TGG 0.417698 3.4:+81458335 MS.gene013797:intron
GTTTGGGTTTGGGGTGTTGG+GGG 0.421911 3.4:-81457669 None:intergenic
GTTGAAGGTGGAAGAGGAGG+AGG 0.423691 3.4:-81457645 None:intergenic
TGAGAGGTTGGTGGAGTGGC+GGG 0.426079 3.4:-81457691 None:intergenic
TCTCAATTCACCGGCGTCGT+TGG 0.434809 3.4:+81457816 MS.gene013797:CDS
TGCCGAGTTGCCTTCACAAA+AGG 0.436422 3.4:+81459412 MS.gene013797:CDS
AGGACCAACTCCAGGTAACT+TGG 0.437622 3.4:-81458453 None:intergenic
AGCCTGAAGGTGGGGAAGAA+TGG 0.438759 3.4:+81458381 MS.gene013797:CDS
TGACACGTGGAAGGTGTTCT+CGG 0.441693 3.4:+81457968 MS.gene013797:CDS
ATCATCGTTGGAGGGAGATT+GGG 0.447502 3.4:-81457898 None:intergenic
CGCAACATTTGAGTGGTGCT+AGG 0.448095 3.4:+81458018 MS.gene013797:CDS
ACCTCTCAAAATCCCGGGTA+TGG 0.449896 3.4:+81457706 MS.gene013797:CDS
CAACTTGGAACCTGCAAGCT+CGG 0.455192 3.4:-81459303 None:intergenic
CCTCCTACCTTTACACTTGA+GGG 0.458910 3.4:+81459436 MS.gene013797:CDS
TTGCTTGATTTCTTAAACGC+CGG 0.472258 3.4:+81457933 MS.gene013797:CDS
AGGAGGAGGTAGTGATTTGG+TGG 0.473290 3.4:-81457631 None:intergenic
ACATGGAAGATGAACTTTGT+TGG 0.476317 3.4:+81459925 MS.gene013797:CDS
AAGAGGAGGAGGTAGTGATT+TGG 0.478738 3.4:-81457634 None:intergenic
AGGTAAGGATAGTTCTTGTC+GGG 0.479365 3.4:-81457745 None:intergenic
CAGCGGAAGGTTTGACCGGT+GGG 0.483622 3.4:-81457777 None:intergenic
ACTTATTTAGGTGAAGTTGA+AGG 0.484673 3.4:+81458146 MS.gene013797:CDS
GTGAAGTTTCTGTGTCAACT+TGG 0.485616 3.4:-81459318 None:intergenic
TGGAGGGAGATTGGGAGTGA+AGG 0.485854 3.4:-81457890 None:intergenic
CTTTGCGGGATTCTTCTGCT+TGG 0.488513 3.4:-81459462 None:intergenic
AACTGAATCAAGCATTCAAA+GGG 0.495318 3.4:-81458056 None:intergenic
GCTTTATTCTCTTCGCACAT+TGG 0.497338 3.4:+81458403 MS.gene013797:CDS
TTGAGAGGTTGGTGGAGTGG+CGG 0.498308 3.4:-81457692 None:intergenic
TGAACTCTTAGTAGAAATCA+TGG 0.498516 3.4:+81459851 MS.gene013797:CDS
CTGTTGATGTTCATGTTTGG+CGG 0.502808 3.4:+81458528 MS.gene013797:CDS
TGACTTAGTCGTTGCGAACA+TGG 0.512375 3.4:+81459908 MS.gene013797:CDS
AACTTGGAACCTGCAAGCTC+GGG 0.516598 3.4:-81459302 None:intergenic
CTTTCCAAGTTACCTGGAGT+TGG 0.517490 3.4:+81458449 MS.gene013797:CDS
GAAGATGTTTGAGGGAAATG+AGG 0.519541 3.4:-81457845 None:intergenic
GAGGTAAGGATAGTTCTTGT+CGG 0.520754 3.4:-81457746 None:intergenic
TTTCCAGCGGAAGGTTTGAC+CGG 0.521741 3.4:-81457781 None:intergenic
CCCTCCTACCTTTACACTTG+AGG 0.524416 3.4:+81459435 MS.gene013797:CDS
TAAAACAGCTTGAGCCCAGC+CGG 0.524454 3.4:-81459384 None:intergenic
CTTATTTAGGTGAAGTTGAA+GGG 0.524953 3.4:+81458147 MS.gene013797:CDS
TCCCTCAAACATCTTCAAAA+CGG 0.526912 3.4:+81457852 MS.gene013797:CDS
AAACTGAATCAAGCATTCAA+AGG 0.527556 3.4:-81458057 None:intergenic
CCACCAACCTCTCAAAATCC+CGG 0.529694 3.4:+81457700 MS.gene013797:CDS
TGTTGAGAGGGATCCATACC+CGG 0.530592 3.4:-81457719 None:intergenic
AGTATGGTAAATATGCCGGC+TGG 0.531143 3.4:+81459369 MS.gene013797:CDS
CCCTCAAGTGTAAAGGTAGG+AGG 0.533406 3.4:-81459436 None:intergenic
AGAGGTGGACAGTGAACTAC+TGG 0.535788 3.4:+81459881 MS.gene013797:CDS
GGAGGGAGATTGGGAGTGAA+GGG 0.536641 3.4:-81457889 None:intergenic
GTGTTTCTCTTGCTGACACG+TGG 0.537150 3.4:+81457955 MS.gene013797:CDS
ACAAAGTATGGTAAATATGC+CGG 0.537281 3.4:+81459365 MS.gene013797:CDS
TCTTGTCGGGTTATGTTGAG+AGG 0.537793 3.4:-81457732 None:intergenic
CCAGCGGAAGGTTTGACCGG+TGG 0.538070 3.4:-81457778 None:intergenic
GCAACATTTGAGTGGTGCTA+GGG 0.540107 3.4:+81458019 MS.gene013797:CDS
GAAAACAGCAAAGAAGAAGC+TGG 0.540644 3.4:+81459491 MS.gene013797:CDS
ATGTTTGAGGGAAATGAGGT+GGG 0.544232 3.4:-81457841 None:intergenic
CCACCGGTCAAACCTTCCGC+TGG 0.544466 3.4:+81457778 MS.gene013797:CDS
GCATTCAAAGCCTGAAGGTG+GGG 0.546759 3.4:+81458373 MS.gene013797:CDS
TCTGAACTTTCCAAGTTACC+TGG 0.547907 3.4:+81458443 MS.gene013797:CDS
TGCATTCAAAGCCTGAAGGT+GGG 0.549194 3.4:+81458372 MS.gene013797:CDS
TTGCATTCAAAGCCTGAAGG+TGG 0.549353 3.4:+81458371 MS.gene013797:CDS
GGATTCCGATGAAAGATTTG+CGG 0.549689 3.4:+81457989 MS.gene013797:CDS
CAGTTCCGCAAATCTTTCAT+CGG 0.560607 3.4:-81457994 None:intergenic
CTCCAACGATGATTGCAAAA+CGG 0.563244 3.4:+81457908 MS.gene013797:CDS
TGTTGATGTTCATGTTTGGC+GGG 0.563445 3.4:+81458529 MS.gene013797:CDS
GTTGAGAGGGATCCATACCC+GGG 0.563985 3.4:-81457718 None:intergenic
TTTGTTGGCAGAGTAAATAG+TGG 0.564187 3.4:+81459940 MS.gene013797:CDS
ACCTGGAGTTGGTCCTAAAG+TGG 0.565307 3.4:+81458460 MS.gene013797:CDS
GTATGGTAAATATGCCGGCT+GGG 0.571044 3.4:+81459370 MS.gene013797:CDS
CACCAACCTCTCAAAATCCC+GGG 0.574837 3.4:+81457701 MS.gene013797:CDS
CTTGTCGGGTTATGTTGAGA+GGG 0.578835 3.4:-81457731 None:intergenic
TTCTCTTGCTGACACGTGGA+AGG 0.591357 3.4:+81457959 MS.gene013797:CDS
TTGGTGTCCCTCAAGTGTAA+AGG 0.593031 3.4:-81459443 None:intergenic
ACTTCACAGTCGTGTTGCAG+AGG 0.596405 3.4:+81459334 MS.gene013797:CDS
AACATGAACATCAACAGGAA+TGG 0.597125 3.4:-81458522 None:intergenic
TTACCTCTCATCTTCCCCAC+CGG 0.598386 3.4:+81457762 MS.gene013797:CDS
AGCGGAAGGTTTGACCGGTG+GGG 0.603850 3.4:-81457776 None:intergenic
GGAGGAGGTAGTGATTTGGT+GGG 0.604507 3.4:-81457630 None:intergenic
GCCACTTTAGGACCAACTCC+AGG 0.606013 3.4:-81458461 None:intergenic
GGTGGGGAAGATGAGAGGTA+AGG 0.606025 3.4:-81457760 None:intergenic
ACGACGCCGGTGAATTGAGA+AGG 0.607725 3.4:-81457813 None:intergenic
AGAAATCATGGTCGAAGCAG+AGG 0.608867 3.4:+81459863 MS.gene013797:CDS
GCCGGTGAATTGAGAAGGAG+CGG 0.615116 3.4:-81457808 None:intergenic
TGACCGGTGGGGAAGATGAG+AGG 0.615666 3.4:-81457765 None:intergenic
CCTCAAGTGTAAAGGTAGGA+GGG 0.619016 3.4:-81459435 None:intergenic
AATCATGGTCGAAGCAGAGG+TGG 0.620518 3.4:+81459866 MS.gene013797:CDS
ACCGCTCCTTCTCAATTCAC+CGG 0.631136 3.4:+81457807 MS.gene013797:CDS
GAGGTGGGAGCCAACGACGC+CGG 0.631246 3.4:-81457826 None:intergenic
GCTTTGCATTCAAAGCCTGA+AGG 0.631885 3.4:+81458368 MS.gene013797:CDS
GATGTTTGAGGGAAATGAGG+TGG 0.643569 3.4:-81457842 None:intergenic
CGTGTCAGCAAGAGAAACAC+CGG 0.651572 3.4:-81457952 None:intergenic
GAACATCAACAGGAATGGCA+TGG 0.655759 3.4:-81458517 None:intergenic
TGTCCCTCAAGTGTAAAGGT+AGG 0.665958 3.4:-81459439 None:intergenic
GAACTGGCGCAACATTTGAG+TGG 0.700408 3.4:+81458011 MS.gene013797:CDS
GGTGGACAGTGAACTACTGG+CGG 0.704341 3.4:+81459884 MS.gene013797:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAATCTAATTAACAG+AGG - chr3.4:81459131-81459150 None:intergenic 15.0%
!! TTCTAATGTTGTAATAAAAT+TGG + chr3.4:81458608-81458627 MS.gene013797:intron 15.0%
!!! TGTTGTATTATTTTTTTCAT+GGG + chr3.4:81459065-81459084 MS.gene013797:intron 15.0%
!!! TTGTTGTATTATTTTTTTCA+TGG + chr3.4:81459064-81459083 MS.gene013797:intron 15.0%
!!! GTTGTATTATTTTTTTCATG+GGG + chr3.4:81459066-81459085 MS.gene013797:intron 20.0%
! AAACTATAAGAGAAACTGTT+AGG + chr3.4:81458933-81458952 MS.gene013797:intron 25.0%
! CAAGATATTGAGATAAAACA+TGG + chr3.4:81459679-81459698 MS.gene013797:intron 25.0%
! GTTCTATCATAAACCTTATT+TGG - chr3.4:81458986-81459005 None:intergenic 25.0%
! GTTTCATTACAGATTTAGAA+GGG + chr3.4:81459098-81459117 MS.gene013797:intron 25.0%
! TAAACTTGATGTTATAACGT+AGG + chr3.4:81459536-81459555 MS.gene013797:intron 25.0%
! TATTAGTAGAATCACGAAAA+TGG + chr3.4:81458100-81458119 MS.gene013797:CDS 25.0%
! TTGTTACCTATCAATAAGAT+GGG + chr3.4:81458581-81458600 MS.gene013797:intron 25.0%
! TTTGTTACCTATCAATAAGA+TGG + chr3.4:81458580-81458599 MS.gene013797:intron 25.0%
!! AAGACAAATTTGATAGCAAA+AGG + chr3.4:81458675-81458694 MS.gene013797:intron 25.0%
!! AGACAAATTTGATAGCAAAA+GGG + chr3.4:81458676-81458695 MS.gene013797:intron 25.0%
!! CTTTTATCATTTTCAAACTG+GGG + chr3.4:81459254-81459273 MS.gene013797:intron 25.0%
!! GCTTTTATCATTTTCAAACT+GGG + chr3.4:81459253-81459272 MS.gene013797:intron 25.0%
!! TGAAGTATTTAAGCAAAAGT+AGG - chr3.4:81458558-81458577 None:intergenic 25.0%
!! TGCTTTTATCATTTTCAAAC+TGG + chr3.4:81459252-81459271 MS.gene013797:intron 25.0%
!!! ATCTTGTAGAGTTTTATGAT+TGG + chr3.4:81459204-81459223 MS.gene013797:intron 25.0%
!!! ATTATTTTTTTCCGTGGTTT+AGG + chr3.4:81458714-81458733 MS.gene013797:intron 25.0%
AAACTGAATCAAGCATTCAA+AGG - chr3.4:81458060-81458079 None:intergenic 30.0%
AAATTGCCCATCTTATTGAT+AGG - chr3.4:81458590-81458609 None:intergenic 30.0%
AACTGAATCAAGCATTCAAA+GGG - chr3.4:81458059-81458078 None:intergenic 30.0%
AACTGTTAGGAAATATGTAG+AGG + chr3.4:81458946-81458965 MS.gene013797:intron 30.0%
ACAAAGTATGGTAAATATGC+CGG + chr3.4:81459365-81459384 MS.gene013797:CDS 30.0%
ACTTATTTAGGTGAAGTTGA+AGG + chr3.4:81458146-81458165 MS.gene013797:CDS 30.0%
ATATGTAGAGGTTAATGAGT+TGG + chr3.4:81458958-81458977 MS.gene013797:intron 30.0%
CTTATTTAGGTGAAGTTGAA+GGG + chr3.4:81458147-81458166 MS.gene013797:CDS 30.0%
GATAGGGCTAAATATATAAC+TGG + chr3.4:81458335-81458354 MS.gene013797:intron 30.0%
GGTTTCATTACAGATTTAGA+AGG + chr3.4:81459097-81459116 MS.gene013797:intron 30.0%
GTAGAAAAGTGGTATAAAAC+TGG + chr3.4:81458806-81458825 MS.gene013797:intron 30.0%
TGAACTCTTAGTAGAAATCA+TGG + chr3.4:81459851-81459870 MS.gene013797:CDS 30.0%
! GTTTCTCTTATAGTTTTTCC+AGG - chr3.4:81458929-81458948 None:intergenic 30.0%
! TAATGAGTTGGATCCAAATA+AGG + chr3.4:81458970-81458989 MS.gene013797:intron 30.0%
!! TTATACCACTTTTCTACTGT+AGG - chr3.4:81458803-81458822 None:intergenic 30.0%
!!! GTATTATTTTTTTCATGGGG+TGG + chr3.4:81459069-81459088 MS.gene013797:intron 30.0%
!!! GTTGTCATTATTTTTTTCCG+TGG + chr3.4:81458708-81458727 MS.gene013797:intron 30.0%
!!! TGGTTGCTATTTTCTTGATA+GGG + chr3.4:81458319-81458338 MS.gene013797:intron 30.0%
AACATGAACATCAACAGGAA+TGG - chr3.4:81458525-81458544 None:intergenic 35.0%
ACATGGAAGATGAACTTTGT+TGG + chr3.4:81459925-81459944 MS.gene013797:CDS 35.0%
ACGAAGAGTAGATTAGATGT+AGG + chr3.4:81458876-81458895 MS.gene013797:intron 35.0%
GTTCAGAAACTAATGAAAGC+TGG - chr3.4:81458202-81458221 None:intergenic 35.0%
TCCCTCAAACATCTTCAAAA+CGG + chr3.4:81457852-81457871 MS.gene013797:CDS 35.0%
TCTGTGTCAATTGAAGGTTA+GGG - chr3.4:81459822-81459841 None:intergenic 35.0%
TGCTATCATTTATGCATGAC+TGG + chr3.4:81459174-81459193 MS.gene013797:intron 35.0%
TTCCTGTTGATGTTCATGTT+TGG + chr3.4:81458525-81458544 MS.gene013797:CDS 35.0%
TTCGATTAGAGTGAGATCTA+CGG + chr3.4:81459603-81459622 MS.gene013797:intron 35.0%
TTGATTACGTTTCGTCTCTT+GGG + chr3.4:81458123-81458142 MS.gene013797:CDS 35.0%
TTGCTTGATTTCTTAAACGC+CGG + chr3.4:81457933-81457952 MS.gene013797:CDS 35.0%
! AAGTGGTATAAAACTGGCTT+AGG + chr3.4:81458812-81458831 MS.gene013797:intron 35.0%
! CTCGGGTAAGATATACTTTT+GGG - chr3.4:81459288-81459307 None:intergenic 35.0%
! CTGTTTTCTTCTATCTTTGC+GGG - chr3.4:81459479-81459498 None:intergenic 35.0%
! GAGGCTTTTGTAACAAAGTA+TGG + chr3.4:81459353-81459372 MS.gene013797:CDS 35.0%
!! GCTGTTTTCTTCTATCTTTG+CGG - chr3.4:81459480-81459499 None:intergenic 35.0%
!! TTTTGGTTACAGGTTAGGTT+AGG + chr3.4:81458241-81458260 MS.gene013797:intron 35.0%
!!! GTGGTTGCTATTTTCTTGAT+AGG + chr3.4:81458318-81458337 MS.gene013797:intron 35.0%
!!! TTATTTTTTTCATGGGGTGG+TGG + chr3.4:81459072-81459091 MS.gene013797:intron 35.0%
!!! TTTTTTCCGTGGTTTAGGAA+TGG + chr3.4:81458719-81458738 MS.gene013797:intron 35.0%
ACACCATTAGAGAGAGAGTT+GGG + chr3.4:81458771-81458790 MS.gene013797:intron 40.0%
AGGTAAGGATAGTTCTTGTC+GGG - chr3.4:81457748-81457767 None:intergenic 40.0%
ATGTTTGAGGGAAATGAGGT+GGG - chr3.4:81457844-81457863 None:intergenic 40.0%
ATTCCTAATCATATCCCGTC+TGG - chr3.4:81458750-81458769 None:intergenic 40.0%
CAGTTCCGCAAATCTTTCAT+CGG - chr3.4:81457997-81458016 None:intergenic 40.0%
CTAACCTTCAATTGACACAG+AGG + chr3.4:81459821-81459840 MS.gene013797:intron 40.0%
CTCCAACGATGATTGCAAAA+CGG + chr3.4:81457908-81457927 MS.gene013797:CDS 40.0%
CTCTGTGTCAATTGAAGGTT+AGG - chr3.4:81459823-81459842 None:intergenic 40.0%
CTGTTGATGTTCATGTTTGG+CGG + chr3.4:81458528-81458547 MS.gene013797:CDS 40.0%
CTTCGTACTACAACATCTAC+AGG - chr3.4:81458862-81458881 None:intergenic 40.0%
GAAAACAGCAAAGAAGAAGC+TGG + chr3.4:81459491-81459510 MS.gene013797:CDS 40.0%
GAAGATGTTTGAGGGAAATG+AGG - chr3.4:81457848-81457867 None:intergenic 40.0%
GAGGTAAGGATAGTTCTTGT+CGG - chr3.4:81457749-81457768 None:intergenic 40.0%
GGATTCCGATGAAAGATTTG+CGG + chr3.4:81457989-81458008 MS.gene013797:CDS 40.0%
GTCTTACCATTCCTAAACCA+CGG - chr3.4:81458728-81458747 None:intergenic 40.0%
GTGAAGTTTCTGTGTCAACT+TGG - chr3.4:81459321-81459340 None:intergenic 40.0%
GTTGATTACGTTTCGTCTCT+TGG + chr3.4:81458122-81458141 MS.gene013797:CDS 40.0%
GTTTCGTGTGAATGTTAACG+TGG + chr3.4:81458299-81458318 MS.gene013797:intron 40.0%
TAGCTCCTACAGTAGAAAAG+TGG + chr3.4:81458795-81458814 MS.gene013797:intron 40.0%
TCGATTAGAGTGAGATCTAC+GGG + chr3.4:81459604-81459623 MS.gene013797:intron 40.0%
TCGTCTCTTGGGACTTATTT+AGG + chr3.4:81458134-81458153 MS.gene013797:CDS 40.0%
TCTGAACTTTCCAAGTTACC+TGG + chr3.4:81458443-81458462 MS.gene013797:CDS 40.0%
TGTTGATGTTCATGTTTGGC+GGG + chr3.4:81458529-81458548 MS.gene013797:CDS 40.0%
TTAGGAATGGTAAGACCAGA+CGG + chr3.4:81458732-81458751 MS.gene013797:intron 40.0%
! AATGAAAGCTGGTTCAGAGT+AGG - chr3.4:81458191-81458210 None:intergenic 40.0%
! GCTCGGGTAAGATATACTTT+TGG - chr3.4:81459289-81459308 None:intergenic 40.0%
! GCTTTATTCTCTTCGCACAT+TGG + chr3.4:81458403-81458422 MS.gene013797:CDS 40.0%
! GTTTTGCAATCATCGTTGGA+GGG - chr3.4:81457909-81457928 None:intergenic 40.0%
! TGGTATAAAACTGGCTTAGG+TGG + chr3.4:81458815-81458834 MS.gene013797:intron 40.0%
!!! GCCGTTTTGAAGATGTTTGA+GGG - chr3.4:81457856-81457875 None:intergenic 40.0%
AACGTAGGCGTTCGAATATG+CGG + chr3.4:81459551-81459570 MS.gene013797:intron 45.0%
AAGAGGAGGAGGTAGTGATT+TGG - chr3.4:81457637-81457656 None:intergenic 45.0%
AATCATCGTTGGAGGGAGAT+TGG - chr3.4:81457902-81457921 None:intergenic 45.0%
ACCTTCAATTGACACAGAGG+TGG + chr3.4:81459824-81459843 MS.gene013797:intron 45.0%
ACTGCTGAGTGATGAATGAG+GGG + chr3.4:81459709-81459728 MS.gene013797:intron 45.0%
AGAAATCATGGTCGAAGCAG+AGG + chr3.4:81459863-81459882 MS.gene013797:CDS 45.0%
AGACCAGACGGGATATGATT+AGG + chr3.4:81458744-81458763 MS.gene013797:intron 45.0%
AGTATGGTAAATATGCCGGC+TGG + chr3.4:81459369-81459388 MS.gene013797:CDS 45.0%
AGTCAGATCAGAAGAGGTAG+TGG + chr3.4:81458899-81458918 MS.gene013797:intron 45.0%
ATCATCGTTGGAGGGAGATT+GGG - chr3.4:81457901-81457920 None:intergenic 45.0%
CACCATTAGAGAGAGAGTTG+GGG + chr3.4:81458772-81458791 MS.gene013797:intron 45.0%
CACTGCTGAGTGATGAATGA+GGG + chr3.4:81459708-81459727 MS.gene013797:intron 45.0%
CCTCAAGTGTAAAGGTAGGA+GGG - chr3.4:81459438-81459457 None:intergenic 45.0%
CCTCCTACCTTTACACTTGA+GGG + chr3.4:81459436-81459455 MS.gene013797:CDS 45.0%
CGATGAAAGATTTGCGGAAC+TGG + chr3.4:81457995-81458014 MS.gene013797:CDS 45.0%
CGCCAAACATGAACATCAAC+AGG - chr3.4:81458530-81458549 None:intergenic 45.0%
CTTGTCGGGTTATGTTGAGA+GGG - chr3.4:81457734-81457753 None:intergenic 45.0%
CTTTCCAAGTTACCTGGAGT+TGG + chr3.4:81458449-81458468 MS.gene013797:CDS 45.0%
GAACATCAACAGGAATGGCA+TGG - chr3.4:81458520-81458539 None:intergenic 45.0%
GACACCATTAGAGAGAGAGT+TGG + chr3.4:81458770-81458789 MS.gene013797:intron 45.0%
GATGTTTGAGGGAAATGAGG+TGG - chr3.4:81457845-81457864 None:intergenic 45.0%
GCTTTGCATTCAAAGCCTGA+AGG + chr3.4:81458368-81458387 MS.gene013797:CDS 45.0%
TACCCCAACTCTCTCTCTAA+TGG - chr3.4:81458777-81458796 None:intergenic 45.0%
TAGGAATGGTAAGACCAGAC+GGG + chr3.4:81458733-81458752 MS.gene013797:intron 45.0%
TATATCTTACCCGAGCTTGC+AGG + chr3.4:81459293-81459312 MS.gene013797:CDS 45.0%
TCACTGCTGAGTGATGAATG+AGG + chr3.4:81459707-81459726 MS.gene013797:intron 45.0%
TCCACCTCTGTGTCAATTGA+AGG - chr3.4:81459828-81459847 None:intergenic 45.0%
TCTTGTCGGGTTATGTTGAG+AGG - chr3.4:81457735-81457754 None:intergenic 45.0%
TGACTTAGTCGTTGCGAACA+TGG + chr3.4:81459908-81459927 MS.gene013797:CDS 45.0%
TGCATTCAAAGCCTGAAGGT+GGG + chr3.4:81458372-81458391 MS.gene013797:CDS 45.0%
TGTAGGAGTCAGATCAGAAG+AGG + chr3.4:81458893-81458912 MS.gene013797:intron 45.0%
TGTCCCTCAAGTGTAAAGGT+AGG - chr3.4:81459442-81459461 None:intergenic 45.0%
TTGCATTCAAAGCCTGAAGG+TGG + chr3.4:81458371-81458390 MS.gene013797:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr3.4:81459039-81459058 None:intergenic 45.0%
! ATCTACGGGTTGTGAGTCTA+AGG + chr3.4:81459618-81459637 MS.gene013797:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr3.4:81459040-81459059 None:intergenic 45.0%
! CGTTTTGCAATCATCGTTGG+AGG - chr3.4:81457910-81457929 None:intergenic 45.0%
! GCAACATTTGAGTGGTGCTA+GGG + chr3.4:81458019-81458038 MS.gene013797:CDS 45.0%
! GCTATACAAGCAGCCACTTT+AGG - chr3.4:81458476-81458495 None:intergenic 45.0%
! GTATGGTAAATATGCCGGCT+GGG + chr3.4:81459370-81459389 MS.gene013797:CDS 45.0%
! TGAGTGATGAATGAGGGTGT+AGG + chr3.4:81459714-81459733 MS.gene013797:intron 45.0%
! TTGGTGTCCCTCAAGTGTAA+AGG - chr3.4:81459446-81459465 None:intergenic 45.0%
!!! ATTTTGAGAGGTTGGTGGAG+TGG - chr3.4:81457698-81457717 None:intergenic 45.0%
!!! CAACTAAGAGACGCTGGTTT+TGG + chr3.4:81458224-81458243 MS.gene013797:intron 45.0%
!!! CGCCGTTTTGAAGATGTTTG+AGG - chr3.4:81457857-81457876 None:intergenic 45.0%
!!! GCTGGTTTTGGTTACAGGTT+AGG + chr3.4:81458236-81458255 MS.gene013797:intron 45.0%
!!! TGCCGTTTTGCAATCATCGT+TGG - chr3.4:81457913-81457932 None:intergenic 45.0%
!!! TTTTTTCATGGGGTGGTGGA+GGG + chr3.4:81459076-81459095 MS.gene013797:intron 45.0%
!!! TTTTTTTCATGGGGTGGTGG+AGG + chr3.4:81459075-81459094 MS.gene013797:intron 45.0%
AACTTGGAACCTGCAAGCTC+GGG - chr3.4:81459305-81459324 None:intergenic 50.0%
AATCATGGTCGAAGCAGAGG+TGG + chr3.4:81459866-81459885 MS.gene013797:CDS 50.0%
ACCGCTCCTTCTCAATTCAC+CGG + chr3.4:81457807-81457826 MS.gene013797:CDS 50.0%
ACCTCTCAAAATCCCGGGTA+TGG + chr3.4:81457706-81457725 MS.gene013797:CDS 50.0%
ACTTCACAGTCGTGTTGCAG+AGG + chr3.4:81459334-81459353 MS.gene013797:CDS 50.0%
AGAGGTGGACAGTGAACTAC+TGG + chr3.4:81459881-81459900 MS.gene013797:CDS 50.0%
AGGACCAACTCCAGGTAACT+TGG - chr3.4:81458456-81458475 None:intergenic 50.0%
CAACTTGGAACCTGCAAGCT+CGG - chr3.4:81459306-81459325 None:intergenic 50.0%
CACCAACCTCTCAAAATCCC+GGG + chr3.4:81457701-81457720 MS.gene013797:CDS 50.0%
CCACCAACCTCTCAAAATCC+CGG + chr3.4:81457700-81457719 MS.gene013797:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr3.4:81459038-81459057 MS.gene013797:intron 50.0%
CCCTCAAGTGTAAAGGTAGG+AGG - chr3.4:81459439-81459458 None:intergenic 50.0%
CCCTCCTACCTTTACACTTG+AGG + chr3.4:81459435-81459454 MS.gene013797:CDS 50.0%
CGCAACATTTGAGTGGTGCT+AGG + chr3.4:81458018-81458037 MS.gene013797:CDS 50.0%
CGTGTCAGCAAGAGAAACAC+CGG - chr3.4:81457955-81457974 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr3.4:81459035-81459054 None:intergenic 50.0%
CTTTGCGGGATTCTTCTGCT+TGG - chr3.4:81459465-81459484 None:intergenic 50.0%
GAACAGCAACTAAGAGACGC+TGG + chr3.4:81458218-81458237 MS.gene013797:intron 50.0%
GAACTGGCGCAACATTTGAG+TGG + chr3.4:81458011-81458030 MS.gene013797:CDS 50.0%
GCATTCAAAGCCTGAAGGTG+GGG + chr3.4:81458373-81458392 MS.gene013797:CDS 50.0%
GCTTAGGTGGTTTGAGCATG+TGG + chr3.4:81458828-81458847 MS.gene013797:intron 50.0%
GTGTTTCTCTTGCTGACACG+TGG + chr3.4:81457955-81457974 MS.gene013797:CDS 50.0%
TAAAACAGCTTGAGCCCAGC+CGG - chr3.4:81459387-81459406 None:intergenic 50.0%
TGCCGAGTTGCCTTCACAAA+AGG + chr3.4:81459412-81459431 MS.gene013797:CDS 50.0%
TGTTGAGAGGGATCCATACC+CGG - chr3.4:81457722-81457741 None:intergenic 50.0%
TTACCTCTCATCTTCCCCAC+CGG + chr3.4:81457762-81457781 MS.gene013797:CDS 50.0%
TTCTCTTGCTGACACGTGGA+AGG + chr3.4:81457959-81457978 MS.gene013797:CDS 50.0%
TTTCCAGCGGAAGGTTTGAC+CGG - chr3.4:81457784-81457803 None:intergenic 50.0%
! AAGGAGCGGTGTTTTTCCAG+CGG - chr3.4:81457797-81457816 None:intergenic 50.0%
! ACCTGGAGTTGGTCCTAAAG+TGG + chr3.4:81458460-81458479 MS.gene013797:CDS 50.0%
! AGGAGGAGGTAGTGATTTGG+TGG - chr3.4:81457634-81457653 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr3.4:81459041-81459060 None:intergenic 50.0%
! GGCCTTTTGTGAAGGCAACT+CGG - chr3.4:81459417-81459436 None:intergenic 50.0%
! TCCATACCCGGGATTTTGAG+AGG - chr3.4:81457710-81457729 None:intergenic 50.0%
!! AGAAGAGGTAGTGGAAGACC+TGG + chr3.4:81458908-81458927 MS.gene013797:intron 50.0%
!! GGAGGAGGTAGTGATTTGGT+GGG - chr3.4:81457633-81457652 None:intergenic 50.0%
!! TACCCGGGATTTTGAGAGGT+TGG - chr3.4:81457706-81457725 None:intergenic 50.0%
!! TGACACGTGGAAGGTGTTCT+CGG + chr3.4:81457968-81457987 MS.gene013797:CDS 50.0%
!!! GAGACGCTGGTTTTGGTTAC+AGG + chr3.4:81458231-81458250 MS.gene013797:intron 50.0%
ACGACGCCGGTGAATTGAGA+AGG - chr3.4:81457816-81457835 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr3.4:81459027-81459046 None:intergenic 55.0%
AGCCATTCTTCCCCACCTTC+AGG - chr3.4:81458386-81458405 None:intergenic 55.0%
AGCCTGAAGGTGGGGAAGAA+TGG + chr3.4:81458381-81458400 MS.gene013797:CDS 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr3.4:81459026-81459045 MS.gene013797:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr3.4:81459033-81459052 MS.gene013797:intron 55.0%
GCCGGTGAATTGAGAAGGAG+CGG - chr3.4:81457811-81457830 None:intergenic 55.0%
GGAGGGAGATTGGGAGTGAA+GGG - chr3.4:81457892-81457911 None:intergenic 55.0%
GGTGGACAGTGAACTACTGG+CGG + chr3.4:81459884-81459903 MS.gene013797:CDS 55.0%
GGTGGGGAAGATGAGAGGTA+AGG - chr3.4:81457763-81457782 None:intergenic 55.0%
GTTGAAGGTGGAAGAGGAGG+AGG - chr3.4:81457648-81457667 None:intergenic 55.0%
GTTGAGAGGGATCCATACCC+GGG - chr3.4:81457721-81457740 None:intergenic 55.0%
TCTCAATTCACCGGCGTCGT+TGG + chr3.4:81457816-81457835 MS.gene013797:CDS 55.0%
TGGAGGGAGATTGGGAGTGA+AGG - chr3.4:81457893-81457912 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr3.4:81459027-81459046 MS.gene013797:intron 55.0%
! AGCGGTGTTTTTCCAGCGGA+AGG - chr3.4:81457793-81457812 None:intergenic 55.0%
! GAGTCTAAGGCGATACACGC+TGG + chr3.4:81459631-81459650 MS.gene013797:intron 55.0%
! GAGTGATGAATGAGGGGTGC+AGG + chr3.4:81459763-81459782 MS.gene013797:intron 55.0%
! GGGTTTGGGTTTGGGGTGTT+GGG - chr3.4:81457674-81457693 None:intergenic 55.0%
! GGTAGGAGGGCCTTTTGTGA+AGG - chr3.4:81459425-81459444 None:intergenic 55.0%
! GGTGTTGAAGGTGGAAGAGG+AGG - chr3.4:81457651-81457670 None:intergenic 55.0%
!! CCGGGATTTTGAGAGGTTGG+TGG - chr3.4:81457703-81457722 None:intergenic 55.0%
!! GCCACTTTAGGACCAACTCC+AGG - chr3.4:81458464-81458483 None:intergenic 55.0%
!! GGTTTGGGTTTGGGGTGTTG+GGG - chr3.4:81457673-81457692 None:intergenic 55.0%
!! GTTTGGGTTTGGGGTGTTGG+GGG - chr3.4:81457672-81457691 None:intergenic 55.0%
!! TTGAGAGGTTGGTGGAGTGG+CGG - chr3.4:81457695-81457714 None:intergenic 55.0%
AGCGGAAGGTTTGACCGGTG+GGG - chr3.4:81457779-81457798 None:intergenic 60.0%
CAGCGGAAGGTTTGACCGGT+GGG - chr3.4:81457780-81457799 None:intergenic 60.0%
GCGATACACGCTGGAGACTC+AGG + chr3.4:81459640-81459659 MS.gene013797:intron 60.0%
TGACCGGTGGGGAAGATGAG+AGG - chr3.4:81457768-81457787 None:intergenic 60.0%
! CGGGTTTGGGTTTGGGGTGT+TGG - chr3.4:81457675-81457694 None:intergenic 60.0%
!! GAGTGGCGGGTTTGGGTTTG+GGG - chr3.4:81457681-81457700 None:intergenic 60.0%
!! GGAGTGGCGGGTTTGGGTTT+GGG - chr3.4:81457682-81457701 None:intergenic 60.0%
!! GGGGGTGTTGAAGGTGGAAG+AGG - chr3.4:81457654-81457673 None:intergenic 60.0%
!! GGTGTTGGGGGTGTTGAAGG+TGG - chr3.4:81457660-81457679 None:intergenic 60.0%
!! GTTGGTGGAGTGGCGGGTTT+GGG - chr3.4:81457688-81457707 None:intergenic 60.0%
!! TGAGAGGTTGGTGGAGTGGC+GGG - chr3.4:81457694-81457713 None:intergenic 60.0%
!! TGGAGTGGCGGGTTTGGGTT+TGG - chr3.4:81457683-81457702 None:intergenic 60.0%
!! TGGGGTGTTGGGGGTGTTGA+AGG - chr3.4:81457663-81457682 None:intergenic 60.0%
CCACCGGTCAAACCTTCCGC+TGG + chr3.4:81457778-81457797 MS.gene013797:CDS 65.0%
CCAGCGGAAGGTTTGACCGG+TGG - chr3.4:81457781-81457800 None:intergenic 65.0%
!! GGTTGGTGGAGTGGCGGGTT+TGG - chr3.4:81457689-81457708 None:intergenic 65.0%
GAGGTGGGAGCCAACGACGC+CGG - chr3.4:81457829-81457848 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 81457609 81459959 81457609 ID=MS.gene013797
chr3.4 mRNA 81457609 81459959 81457609 ID=MS.gene013797.t1;Parent=MS.gene013797
chr3.4 exon 81457609 81458168 81457609 ID=MS.gene013797.t1.exon1;Parent=MS.gene013797.t1
chr3.4 CDS 81457609 81458168 81457609 ID=cds.MS.gene013797.t1;Parent=MS.gene013797.t1
chr3.4 exon 81458340 81458550 81458340 ID=MS.gene013797.t1.exon2;Parent=MS.gene013797.t1
chr3.4 CDS 81458340 81458550 81458340 ID=cds.MS.gene013797.t1;Parent=MS.gene013797.t1
chr3.4 exon 81459281 81459512 81459281 ID=MS.gene013797.t1.exon3;Parent=MS.gene013797.t1
chr3.4 CDS 81459281 81459512 81459281 ID=cds.MS.gene013797.t1;Parent=MS.gene013797.t1
chr3.4 exon 81459841 81459959 81459841 ID=MS.gene013797.t1.exon4;Parent=MS.gene013797.t1
chr3.4 CDS 81459841 81459959 81459841 ID=cds.MS.gene013797.t1;Parent=MS.gene013797.t1
Gene Sequence

>MS.gene013797

ATGACGAAGAGAAAAAGATCACCCACCAAATCACTACCTCCTCCTCTTCCACCTTCAACACCCCCAACACCCCAAACCCAAACCCGCCACTCCACCAACCTCTCAAAATCCCGGGTATGGATCCCTCTCAACATAACCCGACAAGAACTATCCTTACCTCTCATCTTCCCCACCGGTCAAACCTTCCGCTGGAAAAACACCGCTCCTTCTCAATTCACCGGCGTCGTTGGCTCCCACCTCATTTCCCTCAAACATCTTCAAAACGGCGACGTTTGCTACACCCTTCACTCCCAATCTCCCTCCAACGATGATTGCAAAACGGCATTGCTTGATTTCTTAAACGCCGGTGTTTCTCTTGCTGACACGTGGAAGGTGTTCTCGGATTCCGATGAAAGATTTGCGGAACTGGCGCAACATTTGAGTGGTGCTAGGGTTTTGAGACAAGATCCCTTTGAATGCTTGATTCAGTTTATGTGTTCTTCTAATAATCATATTAGTAGAATCACGAAAATGGTTGATTACGTTTCGTCTCTTGGGACTTATTTAGGTGAAGTTGAAGGGTTTGATTTTCATGCTTTTCCTACTCTGAACCAGCTTTCATTAGTTTCTGAACAGCAACTAAGAGACGCTGGTTTTGGTTACAGGTTAGGTTAGGTTTAGTTTATTCAATAACTATAATAACTGTTATTAGTTTCGTGTGAATGTTAACGTGGTTGCTATTTTCTTGATAGGGCTAAATATATAACTGGCACTGTAAATGCTTTGCATTCAAAGCCTGAAGGTGGGGAAGAATGGCTTTATTCTCTTCGCACATTGGAGCTTGAAGATGTAATATCTGAACTTTCCAAGTTACCTGGAGTTGGTCCTAAAGTGGCTGCTTGTATAGCTCTTTACTCACTTGATCAGCACCATGCCATTCCTGTTGATGTTCATGTTTGGCGGGTAACCTACTTTTGCTTAAATACTTCAAATTTGTTACCTATCAATAAGATGGGCAATTTCTAATGTTGTAATAAAATTGGATGTGAAAATGTGTAATTTTAGAGAATATATTTGAATATATAGCAAGACAAATTTGATAGCAAAAGGGTAGATTTATGTTGTCATTATTTTTTTCCGTGGTTTAGGAATGGTAAGACCAGACGGGATATGATTAGGAATGACACCATTAGAGAGAGAGTTGGGGTAGCTCCTACAGTAGAAAAGTGGTATAAAACTGGCTTAGGTGGTTTGAGCATGTGGAGAGTAGACCTGTAGATGTTGTAGTACGAAGAGTAGATTAGATGTAGGAGTCAGATCAGAAGAGGTAGTGGAAGACCTGGAAAAACTATAAGAGAAACTGTTAGGAAATATGTAGAGGTTAATGAGTTGGATCCAAATAAGGTTTATGATAGAACATTATGACATAATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTATTATTTTTTTCATGGGGTGGTGGAGGGTTTCATTACAGATTTAGAAGGGTGAATCTCCTCTGTTAATTAGATTATTTTATTTATACGTTTTTTTTTTTTTTTTGCTATCATTTATGCATGACTGGTTATCACATCTTGTAGAGTTTTATGATTGGATTGTTGTTTTCTTGAGAGTTAATTTGCTTTTATCATTTTCAAACTGGGGTAAGATTGCCCAAAAGTATATCTTACCCGAGCTTGCAGGTTCCAAGTTGACACAGAAACTTCACAGTCGTGTTGCAGAGGCTTTTGTAACAAAGTATGGTAAATATGCCGGCTGGGCTCAAGCTGTTTTATTTATTGCCGAGTTGCCTTCACAAAAGGCCCTCCTACCTTTACACTTGAGGGACACCAAGCAGAAGAATCCCGCAAAGATAGAAGAAAACAGCAAAGAAGAAGCTGGTAAGAAAATATTTGTAGTCGTTTAAACTTGATGTTATAACGTAGGCGTTCGAATATGCGGCAAATATTTACTATTTTACTTTTTCTTTTTTCGATTAGAGTGAGATCTACGGGTTGTGAGTCTAAGGCGATACACGCTGGAGACTCAGGCGCGACAGACTGCAATCAAGATATTGAGATAAAACATGGTGATATCACTGCTGAGTGATGAATGAGGGTGTAGGTTCTTCTACTATGCATATTCACTGCTGAGTGATGAATGAGGGGTGCAGGTTTTTCTACTATGCATATTGTTAACAACTCTTTCCCTAACCTTCAATTGACACAGAGGTGGATAATGAACTCTTAGTAGAAATCATGGTCGAAGCAGAGGTGGACAGTGAACTACTGGCGGATGACTTAGTCGTTGCGAACATGGAAGATGAACTTTGTTGGCAGAGTAAATAG

Protein sequence

>MS.gene013797.t1

MTKRKRSPTKSLPPPLPPSTPPTPQTQTRHSTNLSKSRVWIPLNITRQELSLPLIFPTGQTFRWKNTAPSQFTGVVGSHLISLKHLQNGDVCYTLHSQSPSNDDCKTALLDFLNAGVSLADTWKVFSDSDERFAELAQHLSGARVLRQDPFECLIQFMCSSNNHISRITKMVDYVSSLGTYLGEVEGAKYITGTVNALHSKPEGGEEWLYSLRTLELEDVISELSKLPGVGPKVAACIALYSLDQHHAIPVDVHVWRIAQKYILPELAGSKLTQKLHSRVAEAFVTKYGKYAGWAQAVLFIAELPSQKALLPLHLRDTKQKNPAKIEENSKEEAEVDNELLVEIMVEAEVDSELLADDLVVANMEDELCWQSK