AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03207


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03207.t1 MTR_3g088510 86.648 352 19 1 1 324 1 352 0.0 587
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03207.t1 AT1G21710 58.084 334 106 5 7 311 11 339 1.42e-130 379

Find 115 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTCTCTTGGGACTTATTT+AGG 0.186122 3.3:-73761928 MS.gene03207:CDS
GGAGTGGCGGGTTTGGGTTT+GGG 0.225556 3.3:+73762383 None:intergenic
TGGAGTGGCGGGTTTGGGTT+TGG 0.232265 3.3:+73762382 None:intergenic
CGGGTTTGGGTTTGGGGTGT+TGG 0.241345 3.3:+73762390 None:intergenic
GAGTGGCGGGTTTGGGTTTG+GGG 0.249611 3.3:+73762384 None:intergenic
GTTGGTGGAGTGGCGGGTTT+GGG 0.259029 3.3:+73762377 None:intergenic
GGTTGGTGGAGTGGCGGGTT+TGG 0.265429 3.3:+73762376 None:intergenic
CGATGAAAGATTTGCGGAAC+TGG 0.268100 3.3:-73762067 MS.gene03207:CDS
TGGGGTGTTGGTGGTGTTGA+AGG 0.287882 3.3:+73762402 None:intergenic
GTTTGGGTTTGGGGTGTTGG+TGG 0.298537 3.3:+73762393 None:intergenic
GCTATACAAGCAGCCACTTT+AGG 0.318798 3.3:+73761589 None:intergenic
GTTGATTACGTTTCGTCTCT+TGG 0.337618 3.3:-73761940 MS.gene03207:CDS
TATTAGTAGAATCACGAAAA+TGG 0.343310 3.3:-73761962 MS.gene03207:CDS
GCTCGGGTAAGATATACTTT+TGG 0.347590 3.3:+73760778 None:intergenic
AGCCATTCTTCCCCACCTTC+AGG 0.363722 3.3:+73761679 None:intergenic
AATCATCGTTGGAGGGAGAT+TGG 0.385553 3.3:+73762163 None:intergenic
TATATCTTACCCGAGCTTGC+AGG 0.389581 3.3:-73760771 MS.gene03207:CDS
CGCCAAACATGAACATCAAC+AGG 0.405155 3.3:+73761535 None:intergenic
TTGATTACGTTTCGTCTCTT+GGG 0.411601 3.3:-73761939 MS.gene03207:CDS
TTCCTGTTGATGTTCATGTT+TGG 0.414571 3.3:-73761537 MS.gene03207:CDS
GATAGGGCTAAATATATAAC+TGG 0.417698 3.3:-73761727 MS.gene03207:intron
GCTTTATTCTCTTCGCACTT+TGG 0.425819 3.3:-73761659 MS.gene03207:CDS
TGAGAGGTTGGTGGAGTGGC+GGG 0.426079 3.3:+73762371 None:intergenic
GGTGTTGGTGGTGTTGAAGG+TGG 0.428047 3.3:+73762405 None:intergenic
TCTCAATTCACCGGCGTCGT+TGG 0.434809 3.3:-73762246 MS.gene03207:CDS
TGCCGAGTTGCCTTCACAAA+AGG 0.436422 3.3:-73760652 MS.gene03207:CDS
AGGACCAACTCCAGGTAACT+TGG 0.437622 3.3:+73761609 None:intergenic
AGCCTGAAGGTGGGGAAGAA+TGG 0.438759 3.3:-73761681 MS.gene03207:CDS
TGACACGTGGAAGGTGTTCT+CGG 0.441693 3.3:-73762094 MS.gene03207:CDS
ATCATCGTTGGAGGGAGATT+GGG 0.447502 3.3:+73762164 None:intergenic
CGCAACATTTGAGTGGTGCT+AGG 0.448095 3.3:-73762044 MS.gene03207:CDS
ACCTCTCAAAATCCCGGGTA+TGG 0.449896 3.3:-73762356 MS.gene03207:CDS
CAACTTGGAACCTGCAAGCT+CGG 0.455192 3.3:+73760761 None:intergenic
GTTGAAGGTGGAAGAGGAGG+AGG 0.456305 3.3:+73762417 None:intergenic
CCTCCTACCTTTACACTTGA+GGG 0.458910 3.3:-73760628 MS.gene03207:CDS
TTGCTTGATTTCTTAAACGC+CGG 0.472258 3.3:-73762129 MS.gene03207:CDS
AGGAGGAGGTAGTGATTTGG+TGG 0.473290 3.3:+73762431 None:intergenic
ACATGGAAGATGAACTTTGT+TGG 0.476317 3.3:-73760139 MS.gene03207:CDS
AAGAGGAGGAGGTAGTGATT+TGG 0.478738 3.3:+73762428 None:intergenic
AGGTAAGGATAGTTCTTGTC+GGG 0.479365 3.3:+73762317 None:intergenic
GGTGGTGTTGAAGGTGGAAG+AGG 0.481251 3.3:+73762411 None:intergenic
CAGCGGAAGGTTTGACCGGT+GGG 0.483622 3.3:+73762285 None:intergenic
ACTTATTTAGGTGAAGTTGA+AGG 0.484673 3.3:-73761916 MS.gene03207:CDS
GAAGGTTTGACCGGTGGGGA+AGG 0.484925 3.3:+73762290 None:intergenic
GTGAAGTTTCTGTGTCAACT+TGG 0.485616 3.3:+73760746 None:intergenic
TGGAGGGAGATTGGGAGTGA+AGG 0.485854 3.3:+73762172 None:intergenic
CTTTGCGGGATTCTTCTGCT+TGG 0.488513 3.3:+73760602 None:intergenic
AACTGAATCAAGCATTCAAA+GGG 0.495318 3.3:+73762006 None:intergenic
TTGAGAGGTTGGTGGAGTGG+CGG 0.498308 3.3:+73762370 None:intergenic
TGAACTCTTAGTAGAAATCA+TGG 0.498516 3.3:-73760213 MS.gene03207:CDS
CTGTTGATGTTCATGTTTGG+CGG 0.502808 3.3:-73761534 MS.gene03207:CDS
TGACTTAGTCGTTGCGAACA+TGG 0.512375 3.3:-73760156 MS.gene03207:CDS
GGTGTTGAAGGTGGAAGAGG+AGG 0.515246 3.3:+73762414 None:intergenic
AACTTGGAACCTGCAAGCTC+GGG 0.516598 3.3:+73760762 None:intergenic
CTTTCCAAGTTACCTGGAGT+TGG 0.517490 3.3:-73761613 MS.gene03207:CDS
GAGGTAAGGATAGTTCTTGT+CGG 0.518734 3.3:+73762316 None:intergenic
GAAGATGTTTGAGGGAAATG+AGG 0.519541 3.3:+73762217 None:intergenic
TTTCCAGCGGAAGGTTTGAC+CGG 0.521741 3.3:+73762281 None:intergenic
CCCTCCTACCTTTACACTTG+AGG 0.524416 3.3:-73760629 MS.gene03207:CDS
TAAAACAGCTTGAGCCCAGC+CGG 0.524454 3.3:+73760680 None:intergenic
CTTATTTAGGTGAAGTTGAA+GGG 0.524953 3.3:-73761915 MS.gene03207:intron
TCCCTCAAACATCTTCAAAA+CGG 0.526912 3.3:-73762210 MS.gene03207:CDS
AAACTGAATCAAGCATTCAA+AGG 0.527556 3.3:+73762005 None:intergenic
CCACCAACCTCTCAAAATCC+CGG 0.529694 3.3:-73762362 MS.gene03207:CDS
TGTTGAGAGGGATCCATACC+CGG 0.530592 3.3:+73762343 None:intergenic
AGTATGGTAAATATGCCGGC+TGG 0.531143 3.3:-73760695 MS.gene03207:CDS
CCCTCAAGTGTAAAGGTAGG+AGG 0.533406 3.3:+73760628 None:intergenic
AGAGGTGGACAGTGAACTAC+TGG 0.535788 3.3:-73760183 MS.gene03207:CDS
GGAGGGAGATTGGGAGTGAA+GGG 0.536641 3.3:+73762173 None:intergenic
GTGTTTCTCTTGCTGACACG+TGG 0.537150 3.3:-73762107 MS.gene03207:CDS
ACAAAGTATGGTAAATATGC+CGG 0.537281 3.3:-73760699 MS.gene03207:CDS
TCTTGTCGGGTTATGTTGAG+AGG 0.537793 3.3:+73762330 None:intergenic
CCAGCGGAAGGTTTGACCGG+TGG 0.538070 3.3:+73762284 None:intergenic
GCAACATTTGAGTGGTGCTA+GGG 0.540107 3.3:-73762043 MS.gene03207:CDS
GAAAACAGCAAAGAAGAAGC+TGG 0.540644 3.3:-73760573 MS.gene03207:intron
ATGTTTGAGGGAAATGAGGT+GGG 0.544232 3.3:+73762221 None:intergenic
CCACCGGTCAAACCTTCCGC+TGG 0.544466 3.3:-73762284 MS.gene03207:CDS
GCATTCAAAGCCTGAAGGTG+GGG 0.546759 3.3:-73761689 MS.gene03207:CDS
TCTGAACTTTCCAAGTTACC+TGG 0.547907 3.3:-73761619 MS.gene03207:CDS
TGCATTCAAAGCCTGAAGGT+GGG 0.549194 3.3:-73761690 MS.gene03207:CDS
TTGCATTCAAAGCCTGAAGG+TGG 0.549353 3.3:-73761691 MS.gene03207:CDS
GGATTCCGATGAAAGATTTG+CGG 0.549689 3.3:-73762073 MS.gene03207:CDS
CAGTTCCGCAAATCTTTCAT+CGG 0.560607 3.3:+73762068 None:intergenic
CTCCAACGATGATTGCAAAA+CGG 0.563244 3.3:-73762154 MS.gene03207:CDS
TGTTGATGTTCATGTTTGGC+GGG 0.563445 3.3:-73761533 MS.gene03207:intron
GTTGAGAGGGATCCATACCC+GGG 0.563985 3.3:+73762344 None:intergenic
TTTGTTGGCAGAGTAAATAG+TGG 0.564187 3.3:-73760124 None:intergenic
ACCTGGAGTTGGTCCTAAAG+TGG 0.565307 3.3:-73761602 MS.gene03207:CDS
GGTGGGGAAGGTGAGAGGTA+AGG 0.569427 3.3:+73762302 None:intergenic
GTATGGTAAATATGCCGGCT+GGG 0.571044 3.3:-73760694 MS.gene03207:CDS
CACCAACCTCTCAAAATCCC+GGG 0.574837 3.3:-73762361 MS.gene03207:CDS
TGACCGGTGGGGAAGGTGAG+AGG 0.575831 3.3:+73762297 None:intergenic
TTACCTCTCACCTTCCCCAC+CGG 0.576560 3.3:-73762300 MS.gene03207:CDS
CTTGTCGGGTTATGTTGAGA+GGG 0.578835 3.3:+73762331 None:intergenic
TTCTCTTGCTGACACGTGGA+AGG 0.591357 3.3:-73762103 MS.gene03207:CDS
TTGGTGTCCCTCAAGTGTAA+AGG 0.593031 3.3:+73760621 None:intergenic
ACTTCACAGTCGTGTTGCAG+AGG 0.596405 3.3:-73760730 MS.gene03207:CDS
AACATGAACATCAACAGGAA+TGG 0.597125 3.3:+73761540 None:intergenic
AGCGGAAGGTTTGACCGGTG+GGG 0.603850 3.3:+73762286 None:intergenic
GGAGGAGGTAGTGATTTGGT+GGG 0.604507 3.3:+73762432 None:intergenic
GCCACTTTAGGACCAACTCC+AGG 0.606013 3.3:+73761601 None:intergenic
ACGACGCCGGTGAATTGAGA+AGG 0.607725 3.3:+73762249 None:intergenic
AGAAATCATGGTCGAAGCAG+AGG 0.608867 3.3:-73760201 MS.gene03207:CDS
GCCGGTGAATTGAGAAGGAG+CGG 0.615116 3.3:+73762254 None:intergenic
CCTCAAGTGTAAAGGTAGGA+GGG 0.619016 3.3:+73760629 None:intergenic
AATCATGGTCGAAGCAGAGG+TGG 0.620518 3.3:-73760198 MS.gene03207:CDS
ACCGCTCCTTCTCAATTCAC+CGG 0.631136 3.3:-73762255 MS.gene03207:CDS
GAGGTGGGAGCCAACGACGC+CGG 0.631246 3.3:+73762236 None:intergenic
GCTTTGCATTCAAAGCCTGA+AGG 0.631885 3.3:-73761694 MS.gene03207:CDS
GATGTTTGAGGGAAATGAGG+TGG 0.643569 3.3:+73762220 None:intergenic
CGTGTCAGCAAGAGAAACAC+CGG 0.651572 3.3:+73762110 None:intergenic
GAACATCAACAGGAATGGCA+TGG 0.655759 3.3:+73761545 None:intergenic
TGTCCCTCAAGTGTAAAGGT+AGG 0.665958 3.3:+73760625 None:intergenic
GAACTGGCGCAACATTTGAG+TGG 0.700408 3.3:-73762051 MS.gene03207:CDS
GGTGGACAGTGAACTACTGG+CGG 0.704341 3.3:-73760180 MS.gene03207:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAATCTAATTAACAG+AGG + chr3.3:73761649-73761668 None:intergenic 15.0%
!! TTCTAATGTTGTAATAAAAT+TGG - chr3.3:73761126-73761145 MS.gene03207:intron 15.0%
!!! TGTTGTATTATTTTTTTCAT+GGG - chr3.3:73761583-73761602 MS.gene03207:CDS 15.0%
!!! TTGTTGTATTATTTTTTTCA+TGG - chr3.3:73761582-73761601 MS.gene03207:CDS 15.0%
!!! GTTGTATTATTTTTTTCATG+GGG - chr3.3:73761584-73761603 MS.gene03207:CDS 20.0%
! AAACTATAAGAGAAACTGTT+AGG - chr3.3:73761451-73761470 MS.gene03207:intron 25.0%
! CAAGATATTGAGATAAAACA+TGG - chr3.3:73762195-73762214 MS.gene03207:CDS 25.0%
! GTTCTATCATAAACCTTATT+TGG + chr3.3:73761504-73761523 None:intergenic 25.0%
! GTTTCATTACAGATTTAGAA+GGG - chr3.3:73761616-73761635 MS.gene03207:CDS 25.0%
! TAAACTTGATGTTATAACGT+AGG - chr3.3:73762052-73762071 MS.gene03207:CDS 25.0%
! TATTAGTAGAATCACGAAAA+TGG - chr3.3:73760618-73760637 MS.gene03207:CDS 25.0%
! TTGTTACCTATCAATAAGAT+GGG - chr3.3:73761099-73761118 MS.gene03207:intron 25.0%
! TTTGTTACCTATCAATAAGA+TGG - chr3.3:73761098-73761117 MS.gene03207:intron 25.0%
!! AAGACAAATTTGATAGCAAA+AGG - chr3.3:73761193-73761212 MS.gene03207:intron 25.0%
!! AGACAAATTTGATAGCAAAA+GGG - chr3.3:73761194-73761213 MS.gene03207:intron 25.0%
!! CTTTTATCATTTTCAAACTG+GGG - chr3.3:73761770-73761789 MS.gene03207:intron 25.0%
!! GCTTTTATCATTTTCAAACT+GGG - chr3.3:73761769-73761788 MS.gene03207:intron 25.0%
!! TGAAGTATTTAAGCAAAAGT+AGG + chr3.3:73761076-73761095 None:intergenic 25.0%
!! TGCTTTTATCATTTTCAAAC+TGG - chr3.3:73761768-73761787 MS.gene03207:intron 25.0%
!!! ATCTTGTAGAGTTTTATGAT+TGG - chr3.3:73761720-73761739 MS.gene03207:CDS 25.0%
!!! ATTATTTTTTTCCGTGGTTT+AGG - chr3.3:73761232-73761251 MS.gene03207:intron 25.0%
AAACTGAATCAAGCATTCAA+AGG + chr3.3:73760578-73760597 None:intergenic 30.0%
AAATTGCCCATCTTATTGAT+AGG + chr3.3:73761108-73761127 None:intergenic 30.0%
AACTGAATCAAGCATTCAAA+GGG + chr3.3:73760577-73760596 None:intergenic 30.0%
AACTGTTAGGAAATATGTAG+AGG - chr3.3:73761464-73761483 MS.gene03207:intron 30.0%
ACAAAGTATGGTAAATATGC+CGG - chr3.3:73761881-73761900 MS.gene03207:intron 30.0%
ACTTATTTAGGTGAAGTTGA+AGG - chr3.3:73760664-73760683 MS.gene03207:CDS 30.0%
ATATGTAGAGGTTAATGAGT+TGG - chr3.3:73761476-73761495 MS.gene03207:intron 30.0%
CTTATTTAGGTGAAGTTGAA+GGG - chr3.3:73760665-73760684 MS.gene03207:CDS 30.0%
GATAGGGCTAAATATATAAC+TGG - chr3.3:73760853-73760872 MS.gene03207:intron 30.0%
GGTTTCATTACAGATTTAGA+AGG - chr3.3:73761615-73761634 MS.gene03207:CDS 30.0%
GTAGAAAAGTGGTATAAAAC+TGG - chr3.3:73761324-73761343 MS.gene03207:intron 30.0%
TGAACTCTTAGTAGAAATCA+TGG - chr3.3:73762367-73762386 MS.gene03207:CDS 30.0%
! GTTTCTCTTATAGTTTTTCC+AGG + chr3.3:73761447-73761466 None:intergenic 30.0%
! TAATGAGTTGGATCCAAATA+AGG - chr3.3:73761488-73761507 MS.gene03207:intron 30.0%
!! TTATACCACTTTTCTACTGT+AGG + chr3.3:73761321-73761340 None:intergenic 30.0%
!!! GTATTATTTTTTTCATGGGG+TGG - chr3.3:73761587-73761606 MS.gene03207:CDS 30.0%
!!! GTTGTCATTATTTTTTTCCG+TGG - chr3.3:73761226-73761245 MS.gene03207:intron 30.0%
!!! TGGTTGCTATTTTCTTGATA+GGG - chr3.3:73760837-73760856 MS.gene03207:intron 30.0%
AACATGAACATCAACAGGAA+TGG + chr3.3:73761043-73761062 None:intergenic 35.0%
ACATGGAAGATGAACTTTGT+TGG - chr3.3:73762441-73762460 MS.gene03207:CDS 35.0%
ACGAAGAGTAGATTAGATGT+AGG - chr3.3:73761394-73761413 MS.gene03207:intron 35.0%
GTTCAGAAACTAATGAAAGC+TGG + chr3.3:73760720-73760739 None:intergenic 35.0%
TCCCTCAAACATCTTCAAAA+CGG - chr3.3:73760370-73760389 MS.gene03207:intron 35.0%
TCTGTGTCAATTGAAGGTTA+GGG + chr3.3:73762338-73762357 None:intergenic 35.0%
TGCTATCATTTATGCATGAC+TGG - chr3.3:73761690-73761709 MS.gene03207:CDS 35.0%
TTCCTGTTGATGTTCATGTT+TGG - chr3.3:73761043-73761062 MS.gene03207:intron 35.0%
TTCGATTAGAGTGAGATCTA+CGG - chr3.3:73762119-73762138 MS.gene03207:CDS 35.0%
TTGATTACGTTTCGTCTCTT+GGG - chr3.3:73760641-73760660 MS.gene03207:CDS 35.0%
TTGCTTGATTTCTTAAACGC+CGG - chr3.3:73760451-73760470 MS.gene03207:intron 35.0%
! AAGTGGTATAAAACTGGCTT+AGG - chr3.3:73761330-73761349 MS.gene03207:intron 35.0%
! CTCGGGTAAGATATACTTTT+GGG + chr3.3:73761804-73761823 None:intergenic 35.0%
! CTGTTTTCTTCTATCTTTGC+GGG + chr3.3:73761995-73762014 None:intergenic 35.0%
! GAGGCTTTTGTAACAAAGTA+TGG - chr3.3:73761869-73761888 MS.gene03207:intron 35.0%
!! GCTGTTTTCTTCTATCTTTG+CGG + chr3.3:73761996-73762015 None:intergenic 35.0%
!! TTTTGGTTACAGGTTAGGTT+AGG - chr3.3:73760759-73760778 MS.gene03207:CDS 35.0%
!!! GTGGTTGCTATTTTCTTGAT+AGG - chr3.3:73760836-73760855 MS.gene03207:intron 35.0%
!!! TTATTTTTTTCATGGGGTGG+TGG - chr3.3:73761590-73761609 MS.gene03207:CDS 35.0%
!!! TTTTTTCCGTGGTTTAGGAA+TGG - chr3.3:73761237-73761256 MS.gene03207:intron 35.0%
ACACCATTAGAGAGAGAGTT+GGG - chr3.3:73761289-73761308 MS.gene03207:intron 40.0%
AGGTAAGGATAGTTCTTGTC+GGG + chr3.3:73760266-73760285 None:intergenic 40.0%
ATGTTTGAGGGAAATGAGGT+GGG + chr3.3:73760362-73760381 None:intergenic 40.0%
ATTCCTAATCATATCCCGTC+TGG + chr3.3:73761268-73761287 None:intergenic 40.0%
CAGTTCCGCAAATCTTTCAT+CGG + chr3.3:73760515-73760534 None:intergenic 40.0%
CTAACCTTCAATTGACACAG+AGG - chr3.3:73762337-73762356 MS.gene03207:CDS 40.0%
CTCCAACGATGATTGCAAAA+CGG - chr3.3:73760426-73760445 MS.gene03207:intron 40.0%
CTCTGTGTCAATTGAAGGTT+AGG + chr3.3:73762339-73762358 None:intergenic 40.0%
CTGTTGATGTTCATGTTTGG+CGG - chr3.3:73761046-73761065 MS.gene03207:intron 40.0%
CTTCGTACTACAACATCTAC+AGG + chr3.3:73761380-73761399 None:intergenic 40.0%
GAAAACAGCAAAGAAGAAGC+TGG - chr3.3:73762007-73762026 MS.gene03207:CDS 40.0%
GAAGATGTTTGAGGGAAATG+AGG + chr3.3:73760366-73760385 None:intergenic 40.0%
GAGGTAAGGATAGTTCTTGT+CGG + chr3.3:73760267-73760286 None:intergenic 40.0%
GGATTCCGATGAAAGATTTG+CGG - chr3.3:73760507-73760526 MS.gene03207:intron 40.0%
GTCTTACCATTCCTAAACCA+CGG + chr3.3:73761246-73761265 None:intergenic 40.0%
GTGAAGTTTCTGTGTCAACT+TGG + chr3.3:73761837-73761856 None:intergenic 40.0%
GTTGATTACGTTTCGTCTCT+TGG - chr3.3:73760640-73760659 MS.gene03207:CDS 40.0%
GTTTCGTGTGAATGTTAACG+TGG - chr3.3:73760817-73760836 MS.gene03207:intron 40.0%
TAGCTCCTACAGTAGAAAAG+TGG - chr3.3:73761313-73761332 MS.gene03207:intron 40.0%
TCGATTAGAGTGAGATCTAC+GGG - chr3.3:73762120-73762139 MS.gene03207:CDS 40.0%
TCGTCTCTTGGGACTTATTT+AGG - chr3.3:73760652-73760671 MS.gene03207:CDS 40.0%
TCTGAACTTTCCAAGTTACC+TGG - chr3.3:73760961-73760980 MS.gene03207:intron 40.0%
TGTTGATGTTCATGTTTGGC+GGG - chr3.3:73761047-73761066 MS.gene03207:intron 40.0%
TTAGGAATGGTAAGACCAGA+CGG - chr3.3:73761250-73761269 MS.gene03207:intron 40.0%
! AATGAAAGCTGGTTCAGAGT+AGG + chr3.3:73760709-73760728 None:intergenic 40.0%
! GCTCGGGTAAGATATACTTT+TGG + chr3.3:73761805-73761824 None:intergenic 40.0%
! GCTTTATTCTCTTCGCACTT+TGG - chr3.3:73760921-73760940 MS.gene03207:intron 40.0%
! GTTTTGCAATCATCGTTGGA+GGG + chr3.3:73760427-73760446 None:intergenic 40.0%
! TGGTATAAAACTGGCTTAGG+TGG - chr3.3:73761333-73761352 MS.gene03207:intron 40.0%
!!! GCCGTTTTGAAGATGTTTGA+GGG + chr3.3:73760374-73760393 None:intergenic 40.0%
AACGTAGGCGTTCGAATATG+CGG - chr3.3:73762067-73762086 MS.gene03207:CDS 45.0%
AAGAGGAGGAGGTAGTGATT+TGG + chr3.3:73760155-73760174 None:intergenic 45.0%
AATCATCGTTGGAGGGAGAT+TGG + chr3.3:73760420-73760439 None:intergenic 45.0%
ACCTTCAATTGACACAGAGG+TGG - chr3.3:73762340-73762359 MS.gene03207:CDS 45.0%
ACTGCTGAGTGATGAATGAG+GGG - chr3.3:73762225-73762244 MS.gene03207:CDS 45.0%
AGAAATCATGGTCGAAGCAG+AGG - chr3.3:73762379-73762398 MS.gene03207:CDS 45.0%
AGACCAGACGGGATATGATT+AGG - chr3.3:73761262-73761281 MS.gene03207:intron 45.0%
AGTATGGTAAATATGCCGGC+TGG - chr3.3:73761885-73761904 MS.gene03207:intron 45.0%
AGTCAGATCAGAAGAGGTAG+TGG - chr3.3:73761417-73761436 MS.gene03207:intron 45.0%
ATCATCGTTGGAGGGAGATT+GGG + chr3.3:73760419-73760438 None:intergenic 45.0%
CACCATTAGAGAGAGAGTTG+GGG - chr3.3:73761290-73761309 MS.gene03207:intron 45.0%
CACTGCTGAGTGATGAATGA+GGG - chr3.3:73762224-73762243 MS.gene03207:CDS 45.0%
CCTCAAGTGTAAAGGTAGGA+GGG + chr3.3:73761954-73761973 None:intergenic 45.0%
CCTCCTACCTTTACACTTGA+GGG - chr3.3:73761952-73761971 MS.gene03207:CDS 45.0%
CGATGAAAGATTTGCGGAAC+TGG - chr3.3:73760513-73760532 MS.gene03207:intron 45.0%
CGCCAAACATGAACATCAAC+AGG + chr3.3:73761048-73761067 None:intergenic 45.0%
CTTGTCGGGTTATGTTGAGA+GGG + chr3.3:73760252-73760271 None:intergenic 45.0%
CTTTCCAAGTTACCTGGAGT+TGG - chr3.3:73760967-73760986 MS.gene03207:intron 45.0%
GAACATCAACAGGAATGGCA+TGG + chr3.3:73761038-73761057 None:intergenic 45.0%
GACACCATTAGAGAGAGAGT+TGG - chr3.3:73761288-73761307 MS.gene03207:intron 45.0%
GATGTTTGAGGGAAATGAGG+TGG + chr3.3:73760363-73760382 None:intergenic 45.0%
GCTTTGCATTCAAAGCCTGA+AGG - chr3.3:73760886-73760905 MS.gene03207:intron 45.0%
TACCCCAACTCTCTCTCTAA+TGG + chr3.3:73761295-73761314 None:intergenic 45.0%
TAGGAATGGTAAGACCAGAC+GGG - chr3.3:73761251-73761270 MS.gene03207:intron 45.0%
TATATCTTACCCGAGCTTGC+AGG - chr3.3:73761809-73761828 MS.gene03207:intron 45.0%
TCACTGCTGAGTGATGAATG+AGG - chr3.3:73762223-73762242 MS.gene03207:CDS 45.0%
TCCACCTCTGTGTCAATTGA+AGG + chr3.3:73762344-73762363 None:intergenic 45.0%
TCTTGTCGGGTTATGTTGAG+AGG + chr3.3:73760253-73760272 None:intergenic 45.0%
TGACTTAGTCGTTGCGAACA+TGG - chr3.3:73762424-73762443 MS.gene03207:CDS 45.0%
TGCATTCAAAGCCTGAAGGT+GGG - chr3.3:73760890-73760909 MS.gene03207:intron 45.0%
TGTAGGAGTCAGATCAGAAG+AGG - chr3.3:73761411-73761430 MS.gene03207:intron 45.0%
TGTCCCTCAAGTGTAAAGGT+AGG + chr3.3:73761958-73761977 None:intergenic 45.0%
TTGCATTCAAAGCCTGAAGG+TGG - chr3.3:73760889-73760908 MS.gene03207:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr3.3:73761557-73761576 None:intergenic 45.0%
! ATCTACGGGTTGTGAGTCTA+AGG - chr3.3:73762134-73762153 MS.gene03207:CDS 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr3.3:73761558-73761577 None:intergenic 45.0%
! CGTTTTGCAATCATCGTTGG+AGG + chr3.3:73760428-73760447 None:intergenic 45.0%
! GCAACATTTGAGTGGTGCTA+GGG - chr3.3:73760537-73760556 MS.gene03207:intron 45.0%
! GCTATACAAGCAGCCACTTT+AGG + chr3.3:73760994-73761013 None:intergenic 45.0%
! GTATGGTAAATATGCCGGCT+GGG - chr3.3:73761886-73761905 MS.gene03207:intron 45.0%
! TGAGTGATGAATGAGGGTGT+AGG - chr3.3:73762230-73762249 MS.gene03207:CDS 45.0%
! TTGGTGTCCCTCAAGTGTAA+AGG + chr3.3:73761962-73761981 None:intergenic 45.0%
!!! ATTTTGAGAGGTTGGTGGAG+TGG + chr3.3:73760216-73760235 None:intergenic 45.0%
!!! CAACTAAGAGACGCTGGTTT+TGG - chr3.3:73760742-73760761 MS.gene03207:CDS 45.0%
!!! CGCCGTTTTGAAGATGTTTG+AGG + chr3.3:73760375-73760394 None:intergenic 45.0%
!!! GCTGGTTTTGGTTACAGGTT+AGG - chr3.3:73760754-73760773 MS.gene03207:CDS 45.0%
!!! TGCCGTTTTGCAATCATCGT+TGG + chr3.3:73760431-73760450 None:intergenic 45.0%
!!! TTTTTTCATGGGGTGGTGGA+GGG - chr3.3:73761594-73761613 MS.gene03207:CDS 45.0%
!!! TTTTTTTCATGGGGTGGTGG+AGG - chr3.3:73761593-73761612 MS.gene03207:CDS 45.0%
AACTTGGAACCTGCAAGCTC+GGG + chr3.3:73761821-73761840 None:intergenic 50.0%
AATCATGGTCGAAGCAGAGG+TGG - chr3.3:73762382-73762401 MS.gene03207:CDS 50.0%
ACCGCTCCTTCTCAATTCAC+CGG - chr3.3:73760325-73760344 MS.gene03207:intron 50.0%
ACCTCTCAAAATCCCGGGTA+TGG - chr3.3:73760224-73760243 MS.gene03207:CDS 50.0%
ACTTCACAGTCGTGTTGCAG+AGG - chr3.3:73761850-73761869 MS.gene03207:intron 50.0%
AGAGGTGGACAGTGAACTAC+TGG - chr3.3:73762397-73762416 MS.gene03207:CDS 50.0%
AGGACCAACTCCAGGTAACT+TGG + chr3.3:73760974-73760993 None:intergenic 50.0%
CAACTTGGAACCTGCAAGCT+CGG + chr3.3:73761822-73761841 None:intergenic 50.0%
CACCAACCTCTCAAAATCCC+GGG - chr3.3:73760219-73760238 MS.gene03207:CDS 50.0%
CCACCAACCTCTCAAAATCC+CGG - chr3.3:73760218-73760237 MS.gene03207:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr3.3:73761556-73761575 MS.gene03207:CDS 50.0%
CCCTCAAGTGTAAAGGTAGG+AGG + chr3.3:73761955-73761974 None:intergenic 50.0%
CCCTCCTACCTTTACACTTG+AGG - chr3.3:73761951-73761970 MS.gene03207:CDS 50.0%
CGCAACATTTGAGTGGTGCT+AGG - chr3.3:73760536-73760555 MS.gene03207:intron 50.0%
CGTGTCAGCAAGAGAAACAC+CGG + chr3.3:73760473-73760492 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr3.3:73761553-73761572 None:intergenic 50.0%
CTTTGCGGGATTCTTCTGCT+TGG + chr3.3:73761981-73762000 None:intergenic 50.0%
GAACAGCAACTAAGAGACGC+TGG - chr3.3:73760736-73760755 MS.gene03207:CDS 50.0%
GAACTGGCGCAACATTTGAG+TGG - chr3.3:73760529-73760548 MS.gene03207:intron 50.0%
GCATTCAAAGCCTGAAGGTG+GGG - chr3.3:73760891-73760910 MS.gene03207:intron 50.0%
GCTTAGGTGGTTTGAGCATG+TGG - chr3.3:73761346-73761365 MS.gene03207:intron 50.0%
GTGTTTCTCTTGCTGACACG+TGG - chr3.3:73760473-73760492 MS.gene03207:intron 50.0%
TAAAACAGCTTGAGCCCAGC+CGG + chr3.3:73761903-73761922 None:intergenic 50.0%
TGCCGAGTTGCCTTCACAAA+AGG - chr3.3:73761928-73761947 MS.gene03207:CDS 50.0%
TGTTGAGAGGGATCCATACC+CGG + chr3.3:73760240-73760259 None:intergenic 50.0%
TTCTCTTGCTGACACGTGGA+AGG - chr3.3:73760477-73760496 MS.gene03207:intron 50.0%
TTTCCAGCGGAAGGTTTGAC+CGG + chr3.3:73760302-73760321 None:intergenic 50.0%
! AAGGAGCGGTGTTTTTCCAG+CGG + chr3.3:73760315-73760334 None:intergenic 50.0%
! ACCTGGAGTTGGTCCTAAAG+TGG - chr3.3:73760978-73760997 MS.gene03207:intron 50.0%
! AGGAGGAGGTAGTGATTTGG+TGG + chr3.3:73760152-73760171 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr3.3:73761559-73761578 None:intergenic 50.0%
! GGCCTTTTGTGAAGGCAACT+CGG + chr3.3:73761933-73761952 None:intergenic 50.0%
! TCCATACCCGGGATTTTGAG+AGG + chr3.3:73760228-73760247 None:intergenic 50.0%
!! AGAAGAGGTAGTGGAAGACC+TGG - chr3.3:73761426-73761445 MS.gene03207:intron 50.0%
!! GGAGGAGGTAGTGATTTGGT+GGG + chr3.3:73760151-73760170 None:intergenic 50.0%
!! TACCCGGGATTTTGAGAGGT+TGG + chr3.3:73760224-73760243 None:intergenic 50.0%
!! TGACACGTGGAAGGTGTTCT+CGG - chr3.3:73760486-73760505 MS.gene03207:intron 50.0%
!!! GAGACGCTGGTTTTGGTTAC+AGG - chr3.3:73760749-73760768 MS.gene03207:CDS 50.0%
ACGACGCCGGTGAATTGAGA+AGG + chr3.3:73760334-73760353 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr3.3:73761545-73761564 None:intergenic 55.0%
AGCCATTCTTCCCCACCTTC+AGG + chr3.3:73760904-73760923 None:intergenic 55.0%
AGCCTGAAGGTGGGGAAGAA+TGG - chr3.3:73760899-73760918 MS.gene03207:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr3.3:73761544-73761563 MS.gene03207:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr3.3:73761551-73761570 MS.gene03207:CDS 55.0%
GCCGGTGAATTGAGAAGGAG+CGG + chr3.3:73760329-73760348 None:intergenic 55.0%
GGAGGGAGATTGGGAGTGAA+GGG + chr3.3:73760410-73760429 None:intergenic 55.0%
GGTGGACAGTGAACTACTGG+CGG - chr3.3:73762400-73762419 MS.gene03207:CDS 55.0%
GTTGAAGGTGGAAGAGGAGG+AGG + chr3.3:73760166-73760185 None:intergenic 55.0%
GTTGAGAGGGATCCATACCC+GGG + chr3.3:73760239-73760258 None:intergenic 55.0%
TCTCAATTCACCGGCGTCGT+TGG - chr3.3:73760334-73760353 MS.gene03207:intron 55.0%
TGGAGGGAGATTGGGAGTGA+AGG + chr3.3:73760411-73760430 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr3.3:73761545-73761564 MS.gene03207:CDS 55.0%
TTACCTCTCACCTTCCCCAC+CGG - chr3.3:73760280-73760299 MS.gene03207:intron 55.0%
! AGCGGTGTTTTTCCAGCGGA+AGG + chr3.3:73760311-73760330 None:intergenic 55.0%
! GAGTCTAAGGCGATACACGC+TGG - chr3.3:73762147-73762166 MS.gene03207:CDS 55.0%
! GAGTGATGAATGAGGGGTGC+AGG - chr3.3:73762279-73762298 MS.gene03207:CDS 55.0%
! GGTAGGAGGGCCTTTTGTGA+AGG + chr3.3:73761941-73761960 None:intergenic 55.0%
! GGTGGTGTTGAAGGTGGAAG+AGG + chr3.3:73760172-73760191 None:intergenic 55.0%
! GGTGTTGAAGGTGGAAGAGG+AGG + chr3.3:73760169-73760188 None:intergenic 55.0%
!! CCGGGATTTTGAGAGGTTGG+TGG + chr3.3:73760221-73760240 None:intergenic 55.0%
!! GCCACTTTAGGACCAACTCC+AGG + chr3.3:73760982-73761001 None:intergenic 55.0%
!! GGTGTTGGTGGTGTTGAAGG+TGG + chr3.3:73760178-73760197 None:intergenic 55.0%
!! GTTTGGGTTTGGGGTGTTGG+TGG + chr3.3:73760190-73760209 None:intergenic 55.0%
!! TGGGGTGTTGGTGGTGTTGA+AGG + chr3.3:73760181-73760200 None:intergenic 55.0%
!! TTGAGAGGTTGGTGGAGTGG+CGG + chr3.3:73760213-73760232 None:intergenic 55.0%
AGCGGAAGGTTTGACCGGTG+GGG + chr3.3:73760297-73760316 None:intergenic 60.0%
CAGCGGAAGGTTTGACCGGT+GGG + chr3.3:73760298-73760317 None:intergenic 60.0%
GAAGGTTTGACCGGTGGGGA+AGG + chr3.3:73760293-73760312 None:intergenic 60.0%
GCGATACACGCTGGAGACTC+AGG - chr3.3:73762156-73762175 MS.gene03207:CDS 60.0%
GGTGGGGAAGGTGAGAGGTA+AGG + chr3.3:73760281-73760300 None:intergenic 60.0%
! CGGGTTTGGGTTTGGGGTGT+TGG + chr3.3:73760193-73760212 None:intergenic 60.0%
!! GAGTGGCGGGTTTGGGTTTG+GGG + chr3.3:73760199-73760218 None:intergenic 60.0%
!! GGAGTGGCGGGTTTGGGTTT+GGG + chr3.3:73760200-73760219 None:intergenic 60.0%
!! GTTGGTGGAGTGGCGGGTTT+GGG + chr3.3:73760206-73760225 None:intergenic 60.0%
!! TGAGAGGTTGGTGGAGTGGC+GGG + chr3.3:73760212-73760231 None:intergenic 60.0%
!! TGGAGTGGCGGGTTTGGGTT+TGG + chr3.3:73760201-73760220 None:intergenic 60.0%
CCACCGGTCAAACCTTCCGC+TGG - chr3.3:73760296-73760315 MS.gene03207:intron 65.0%
CCAGCGGAAGGTTTGACCGG+TGG + chr3.3:73760299-73760318 None:intergenic 65.0%
TGACCGGTGGGGAAGGTGAG+AGG + chr3.3:73760286-73760305 None:intergenic 65.0%
!! GGTTGGTGGAGTGGCGGGTT+TGG + chr3.3:73760207-73760226 None:intergenic 65.0%
GAGGTGGGAGCCAACGACGC+CGG + chr3.3:73760347-73760366 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 73760127 73762475 73760127 ID=MS.gene03207
chr3.3 mRNA 73760127 73762475 73760127 ID=MS.gene03207.t1;Parent=MS.gene03207
chr3.3 exon 73761916 73762475 73761916 ID=MS.gene03207.t1.exon1;Parent=MS.gene03207.t1
chr3.3 CDS 73761916 73762475 73761916 ID=cds.MS.gene03207.t1;Parent=MS.gene03207.t1
chr3.3 exon 73761534 73761744 73761534 ID=MS.gene03207.t1.exon2;Parent=MS.gene03207.t1
chr3.3 CDS 73761534 73761744 73761534 ID=cds.MS.gene03207.t1;Parent=MS.gene03207.t1
chr3.3 exon 73760574 73760805 73760574 ID=MS.gene03207.t1.exon3;Parent=MS.gene03207.t1
chr3.3 CDS 73760574 73760805 73760574 ID=cds.MS.gene03207.t1;Parent=MS.gene03207.t1
chr3.3 exon 73760127 73760245 73760127 ID=MS.gene03207.t1.exon4;Parent=MS.gene03207.t1
chr3.3 CDS 73760127 73760245 73760127 ID=cds.MS.gene03207.t1;Parent=MS.gene03207.t1
Gene Sequence

>MS.gene03207

ATGACGAAGAGAAAAAGATCACCCACCAAATCACTACCTCCTCCTCTTCCACCTTCAACACCACCAACACCCCAAACCCAAACCCGCCACTCCACCAACCTCTCAAAATCCCGGGTATGGATCCCTCTCAACATAACCCGACAAGAACTATCCTTACCTCTCACCTTCCCCACCGGTCAAACCTTCCGCTGGAAAAACACCGCTCCTTCTCAATTCACCGGCGTCGTTGGCTCCCACCTCATTTCCCTCAAACATCTTCAAAACGGCGACGTTTGCTACACCCTTCACTCCCAATCTCCCTCCAACGATGATTGCAAAACGGCATTGCTTGATTTCTTAAACGCCGGTGTTTCTCTTGCTGACACGTGGAAGGTGTTCTCGGATTCCGATGAAAGATTTGCGGAACTGGCGCAACATTTGAGTGGTGCTAGGGTTTTGAGACAAGATCCCTTTGAATGCTTGATTCAGTTTATGTGTTCTTCTAATAATCATATTAGTAGAATCACGAAAATGGTTGATTACGTTTCGTCTCTTGGGACTTATTTAGGTGAAGTTGAAGGGTTTGATTTTCATGCTTTTCCTACTCTGAACCAGCTTTCATTAGTTTCTGAACAGCAACTAAGAGACGCTGGTTTTGGTTACAGGTTAGGTTAGGTTTAGTTTATTCAATAACTATAATAACTGTTATTAGTTTCGTGTGAATGTTAACGTGGTTGCTATTTTCTTGATAGGGCTAAATATATAACTGGCACTGTAAATGCTTTGCATTCAAAGCCTGAAGGTGGGGAAGAATGGCTTTATTCTCTTCGCACTTTGGAGCTTGAAGATGTAATATCTGAACTTTCCAAGTTACCTGGAGTTGGTCCTAAAGTGGCTGCTTGTATAGCTCTTTACTCACTTGATCAGCACCATGCCATTCCTGTTGATGTTCATGTTTGGCGGGTAACCTACTTTTGCTTAAATACTTCAAATTTGTTACCTATCAATAAGATGGGCAATTTCTAATGTTGTAATAAAATTGGATGTGAAAATGTGTAATTTTAGAGAATATATTTGAATATATAGCAAGACAAATTTGATAGCAAAAGGGTAGATTTATGTTGTCATTATTTTTTTCCGTGGTTTAGGAATGGTAAGACCAGACGGGATATGATTAGGAATGACACCATTAGAGAGAGAGTTGGGGTAGCTCCTACAGTAGAAAAGTGGTATAAAACTGGCTTAGGTGGTTTGAGCATGTGGAGAGTAGACCTGTAGATGTTGTAGTACGAAGAGTAGATTAGATGTAGGAGTCAGATCAGAAGAGGTAGTGGAAGACCTGGAAAAACTATAAGAGAAACTGTTAGGAAATATGTAGAGGTTAATGAGTTGGATCCAAATAAGGTTTATGATAGAACATTATGACATAATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTATTATTTTTTTCATGGGGTGGTGGAGGGTTTCATTACAGATTTAGAAGGGTGAATCTCCTCTGTTAATTAGATTATTTTATTTATACGTTTTTTTTTTTTTTGCTATCATTTATGCATGACTGGTTATCACATCTTGTAGAGTTTTATGATTGGATTGTTGTTTTCTTGAGAGTTAATTTGCTTTTATCATTTTCAAACTGGGGTAAGATTGCCCAAAAGTATATCTTACCCGAGCTTGCAGGTTCCAAGTTGACACAGAAACTTCACAGTCGTGTTGCAGAGGCTTTTGTAACAAAGTATGGTAAATATGCCGGCTGGGCTCAAGCTGTTTTATTTATTGCCGAGTTGCCTTCACAAAAGGCCCTCCTACCTTTACACTTGAGGGACACCAAGCAGAAGAATCCCGCAAAGATAGAAGAAAACAGCAAAGAAGAAGCTGGTAAGAAAATATTTGTAGTCGTTTAAACTTGATGTTATAACGTAGGCGTTCGAATATGCGGCAAATATTTACTATTTTACTTTTTCTTTTTTCGATTAGAGTGAGATCTACGGGTTGTGAGTCTAAGGCGATACACGCTGGAGACTCAGGCGCGACAGACTGCAATCAAGATATTGAGATAAAACATGGTGATATCACTGCTGAGTGATGAATGAGGGTGTAGGTTCTTCTACTATGCATATTCACTGCTGAGTGATGAATGAGGGGTGCAGGTTTTTCTACTATGCATATTGTTAACAACTCTTTCCCTAACCTTCAATTGACACAGAGGTGGATAATGAACTCTTAGTAGAAATCATGGTCGAAGCAGAGGTGGACAGTGAACTACTGGCGGATGACTTAGTCGTTGCGAACATGGAAGATGAACTTTGTTGGCAGAGTAAATAG

Protein sequence

>MS.gene03207.t1

MTKRKRSPTKSLPPPLPPSTPPTPQTQTRHSTNLSKSRVWIPLNITRQELSLPLTFPTGQTFRWKNTAPSQFTGVVGSHLISLKHLQNGDVCYTLHSQSPSNDDCKTALLDFLNAGVSLADTWKVFSDSDERFAELAQHLSGARVLRQDPFECLIQFMCSSNNHISRITKMVDYVSSLGTYLGEVEGAKYITGTVNALHSKPEGGEEWLYSLRTLELEDVISELSKLPGVGPKVAACIALYSLDQHHAIPVDVHVWRIAQKYILPELAGSKLTQKLHSRVAEAFVTKYGKYAGWAQAVLFIAELPSQKALLPLHLRDTKQKNPAKIEENSKEEAEVDNELLVEIMVEAEVDSELLADDLVVANMEDELCWQSK