Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73789.t1 | AES72311.2 | 77.8 | 361 | 20 | 2 | 1 | 302 | 1 | 360 | 1.30E-143 | 519.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73789.t1 | Q9FNY7 | 52.9 | 314 | 84 | 4 | 27 | 280 | 30 | 339 | 3.7e-83 | 309.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73789.t1 | G7J4Z8 | 77.8 | 361 | 20 | 2 | 1 | 302 | 1 | 360 | 9.3e-144 | 519.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene73789 | MS.gene003895 | PPI |
| MS.gene73789 | MS.gene28350 | PPI |
| MS.gene73789 | MS.gene28806 | PPI |
| MS.gene73789 | MS.gene060573 | PPI |
| MS.gene73789 | MS.gene07047 | PPI |
| MS.gene73789 | MS.gene050408 | PPI |
| MS.gene73789 | MS.gene072703 | PPI |
| MS.gene73789 | MS.gene54568 | PPI |
| MS.gene73789 | MS.gene46509 | PPI |
| MS.gene73789 | MS.gene044567 | PPI |
| MS.gene73789 | MS.gene038750 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73789.t1 | MTR_3g088510 | 95.513 | 156 | 7 | 0 | 1 | 156 | 1 | 156 | 2.12e-93 | 281 |
| MS.gene73789.t1 | MTR_3g088510 | 91.304 | 138 | 12 | 0 | 156 | 293 | 215 | 352 | 8.66e-86 | 262 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73789.t1 | AT1G21710 | 46.707 | 334 | 113 | 8 | 7 | 280 | 11 | 339 | 9.67e-85 | 259 |
Find 101 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGTGGCGGGTTTGGGTTT+GGG | 0.225556 | 3.3:+73702113 | None:intergenic |
| TGGAGTGGCGGGTTTGGGTT+TGG | 0.232265 | 3.3:+73702112 | None:intergenic |
| CGGGTTTGGGTTTGGGGTGT+TGG | 0.241345 | 3.3:+73702120 | None:intergenic |
| GAGTGGCGGGTTTGGGTTTG+GGG | 0.249611 | 3.3:+73702114 | None:intergenic |
| GTTGGTGGAGTGGCGGGTTT+GGG | 0.259029 | 3.3:+73702107 | None:intergenic |
| GGTTGGTGGAGTGGCGGGTT+TGG | 0.265429 | 3.3:+73702106 | None:intergenic |
| CGATGAAAGATTTGCGGAAC+TGG | 0.268100 | 3.3:-73701797 | MS.gene73789:CDS |
| TGGGGTGTTGGTGGTGTTGA+AGG | 0.287882 | 3.3:+73702132 | None:intergenic |
| GTTTGGGTTTGGGGTGTTGG+TGG | 0.298537 | 3.3:+73702123 | None:intergenic |
| GCTATACAAGCAGCCACTTT+AGG | 0.318798 | 3.3:+73701319 | None:intergenic |
| GCTCGGGTAAGATATACTTT+TGG | 0.347590 | 3.3:+73700502 | None:intergenic |
| AGCCATTCTTCCCCACCTTC+AGG | 0.363722 | 3.3:+73701409 | None:intergenic |
| AATCATCGTTGGAGGGAGAT+TGG | 0.385553 | 3.3:+73701893 | None:intergenic |
| TATATCTTACCCGAGCTTGC+AGG | 0.389581 | 3.3:-73700495 | MS.gene73789:CDS |
| CGCCAAACATGAACATCAAC+AGG | 0.405155 | 3.3:+73701265 | None:intergenic |
| TTCCTGTTGATGTTCATGTT+TGG | 0.414571 | 3.3:-73701267 | MS.gene73789:CDS |
| GATAGGGCTAAATATATAAC+TGG | 0.417698 | 3.3:-73701457 | MS.gene73789:intron |
| GCTTTATTCTCTTCGCACTT+TGG | 0.425819 | 3.3:-73701389 | MS.gene73789:CDS |
| TGAGAGGTTGGTGGAGTGGC+GGG | 0.426079 | 3.3:+73702101 | None:intergenic |
| GGTGTTGGTGGTGTTGAAGG+TGG | 0.428047 | 3.3:+73702135 | None:intergenic |
| TCTCAATTCACCGGCGTCGT+TGG | 0.434809 | 3.3:-73701976 | MS.gene73789:CDS |
| TGCCGAGTTGCCTTCACAAA+AGG | 0.436422 | 3.3:-73700376 | MS.gene73789:CDS |
| AGGACCAACTCCAGGTAACT+TGG | 0.437622 | 3.3:+73701339 | None:intergenic |
| AGCCTGAAGGTGGGGAAGAA+TGG | 0.438759 | 3.3:-73701411 | MS.gene73789:CDS |
| TGACACGTGGAAGGTGTTCT+CGG | 0.441693 | 3.3:-73701824 | MS.gene73789:CDS |
| ATCATCGTTGGAGGGAGATT+GGG | 0.447502 | 3.3:+73701894 | None:intergenic |
| CGCAACATTTGAGTGGTGCT+AGG | 0.448095 | 3.3:-73701774 | MS.gene73789:CDS |
| ACCTCTCAAAATCCCGGGTA+TGG | 0.449896 | 3.3:-73702086 | MS.gene73789:CDS |
| CAACTTGGAACCTGCAAGCT+CGG | 0.455192 | 3.3:+73700485 | None:intergenic |
| GTTGAAGGTGGAAGAGGAGG+AGG | 0.456305 | 3.3:+73702147 | None:intergenic |
| CCTCCTACCTTTACACTTGA+GGG | 0.458910 | 3.3:-73700352 | MS.gene73789:CDS |
| TTGCTTGATTTCTTAAACGC+CGG | 0.472258 | 3.3:-73701859 | MS.gene73789:CDS |
| AGGAGGAGGTAGTGATTTGG+TGG | 0.473290 | 3.3:+73702161 | None:intergenic |
| AAGAGGAGGAGGTAGTGATT+TGG | 0.478738 | 3.3:+73702158 | None:intergenic |
| AGGTAAGGATAGTTCTTGTC+GGG | 0.479365 | 3.3:+73702047 | None:intergenic |
| GGTGGTGTTGAAGGTGGAAG+AGG | 0.481251 | 3.3:+73702141 | None:intergenic |
| CAGCGGAAGGTTTGACCGGT+GGG | 0.483622 | 3.3:+73702015 | None:intergenic |
| GAAGGTTTGACCGGTGGGGA+AGG | 0.484925 | 3.3:+73702020 | None:intergenic |
| GTGAAGTTTCTGTGTCAACT+TGG | 0.485616 | 3.3:+73700470 | None:intergenic |
| TGGAGGGAGATTGGGAGTGA+AGG | 0.485854 | 3.3:+73701902 | None:intergenic |
| CTTTGCGGGATTCTTCTGCT+TGG | 0.488513 | 3.3:+73700326 | None:intergenic |
| AACTGAATCAAGCATTCAAA+GGG | 0.495318 | 3.3:+73701736 | None:intergenic |
| TTGAGAGGTTGGTGGAGTGG+CGG | 0.498308 | 3.3:+73702100 | None:intergenic |
| CTGTTGATGTTCATGTTTGG+CGG | 0.502808 | 3.3:-73701264 | MS.gene73789:CDS |
| GGTGTTGAAGGTGGAAGAGG+AGG | 0.515246 | 3.3:+73702144 | None:intergenic |
| AACTTGGAACCTGCAAGCTC+GGG | 0.516598 | 3.3:+73700486 | None:intergenic |
| CTTTCCAAGTTACCTGGAGT+TGG | 0.517490 | 3.3:-73701343 | MS.gene73789:CDS |
| GAGGTAAGGATAGTTCTTGT+CGG | 0.518734 | 3.3:+73702046 | None:intergenic |
| GAAGATGTTTGAGGGAAATG+AGG | 0.519541 | 3.3:+73701947 | None:intergenic |
| TTTCCAGCGGAAGGTTTGAC+CGG | 0.521741 | 3.3:+73702011 | None:intergenic |
| CCCTCCTACCTTTACACTTG+AGG | 0.524416 | 3.3:-73700353 | MS.gene73789:CDS |
| TAAAACAGCTTGAGCCCAGC+CGG | 0.524454 | 3.3:+73700404 | None:intergenic |
| TCCCTCAAACATCTTCAAAA+CGG | 0.526912 | 3.3:-73701940 | MS.gene73789:CDS |
| AAACTGAATCAAGCATTCAA+AGG | 0.527556 | 3.3:+73701735 | None:intergenic |
| CCACCAACCTCTCAAAATCC+CGG | 0.529694 | 3.3:-73702092 | MS.gene73789:CDS |
| TGTTGAGAGGGATCCATACC+CGG | 0.530592 | 3.3:+73702073 | None:intergenic |
| AGTATGGTAAATATGCCGGC+TGG | 0.531143 | 3.3:-73700419 | MS.gene73789:CDS |
| CCCTCAAGTGTAAAGGTAGG+AGG | 0.533406 | 3.3:+73700352 | None:intergenic |
| GGAGGGAGATTGGGAGTGAA+GGG | 0.536641 | 3.3:+73701903 | None:intergenic |
| GTGTTTCTCTTGCTGACACG+TGG | 0.537150 | 3.3:-73701837 | MS.gene73789:CDS |
| ACAAAGTATGGTAAATATGC+CGG | 0.537281 | 3.3:-73700423 | MS.gene73789:CDS |
| TCTTGTCGGGTTATGTTGAG+AGG | 0.537793 | 3.3:+73702060 | None:intergenic |
| CCAGCGGAAGGTTTGACCGG+TGG | 0.538070 | 3.3:+73702014 | None:intergenic |
| GCAACATTTGAGTGGTGCTA+GGG | 0.540107 | 3.3:-73701773 | MS.gene73789:CDS |
| GAAAACAGCAAAGAAGAAGC+TGG | 0.540644 | 3.3:-73700297 | MS.gene73789:CDS |
| ATGTTTGAGGGAAATGAGGT+GGG | 0.544232 | 3.3:+73701951 | None:intergenic |
| CCACCGGTCAAACCTTCCGC+TGG | 0.544466 | 3.3:-73702014 | MS.gene73789:CDS |
| GCATTCAAAGCCTGAAGGTG+GGG | 0.546759 | 3.3:-73701419 | MS.gene73789:CDS |
| TCTGAACTTTCCAAGTTACC+TGG | 0.547907 | 3.3:-73701349 | MS.gene73789:CDS |
| TGCATTCAAAGCCTGAAGGT+GGG | 0.549194 | 3.3:-73701420 | MS.gene73789:CDS |
| TTGCATTCAAAGCCTGAAGG+TGG | 0.549353 | 3.3:-73701421 | MS.gene73789:CDS |
| GGATTCCGATGAAAGATTTG+CGG | 0.549689 | 3.3:-73701803 | MS.gene73789:CDS |
| CAGTTCCGCAAATCTTTCAT+CGG | 0.560607 | 3.3:+73701798 | None:intergenic |
| CTCCAACGATGATTGCAAAA+CGG | 0.563244 | 3.3:-73701884 | MS.gene73789:CDS |
| TGTTGATGTTCATGTTTGGC+GGG | 0.563445 | 3.3:-73701263 | MS.gene73789:intron |
| GTTGAGAGGGATCCATACCC+GGG | 0.563985 | 3.3:+73702074 | None:intergenic |
| ACCTGGAGTTGGTCCTAAAG+TGG | 0.565307 | 3.3:-73701332 | MS.gene73789:CDS |
| GGTGGGGAAGGTGAGAGGTA+AGG | 0.569427 | 3.3:+73702032 | None:intergenic |
| GTATGGTAAATATGCCGGCT+GGG | 0.571044 | 3.3:-73700418 | MS.gene73789:CDS |
| CACCAACCTCTCAAAATCCC+GGG | 0.574837 | 3.3:-73702091 | MS.gene73789:CDS |
| TGACCGGTGGGGAAGGTGAG+AGG | 0.575831 | 3.3:+73702027 | None:intergenic |
| TTACCTCTCACCTTCCCCAC+CGG | 0.576560 | 3.3:-73702030 | MS.gene73789:CDS |
| CTTGTCGGGTTATGTTGAGA+GGG | 0.578835 | 3.3:+73702061 | None:intergenic |
| TTCTCTTGCTGACACGTGGA+AGG | 0.591357 | 3.3:-73701833 | MS.gene73789:CDS |
| TTGGTGTCCCTCAAGTGTAA+AGG | 0.593031 | 3.3:+73700345 | None:intergenic |
| ACTTCACAGTCGTGTTGCAG+AGG | 0.596405 | 3.3:-73700454 | MS.gene73789:CDS |
| AACATGAACATCAACAGGAA+TGG | 0.597125 | 3.3:+73701270 | None:intergenic |
| AGCGGAAGGTTTGACCGGTG+GGG | 0.603850 | 3.3:+73702016 | None:intergenic |
| GGAGGAGGTAGTGATTTGGT+GGG | 0.604507 | 3.3:+73702162 | None:intergenic |
| GCCACTTTAGGACCAACTCC+AGG | 0.606013 | 3.3:+73701331 | None:intergenic |
| ACGACGCCGGTGAATTGAGA+AGG | 0.607725 | 3.3:+73701979 | None:intergenic |
| GCCGGTGAATTGAGAAGGAG+CGG | 0.615116 | 3.3:+73701984 | None:intergenic |
| CCTCAAGTGTAAAGGTAGGA+GGG | 0.619016 | 3.3:+73700353 | None:intergenic |
| ACCGCTCCTTCTCAATTCAC+CGG | 0.631136 | 3.3:-73701985 | MS.gene73789:CDS |
| GAGGTGGGAGCCAACGACGC+CGG | 0.631246 | 3.3:+73701966 | None:intergenic |
| GCTTTGCATTCAAAGCCTGA+AGG | 0.631885 | 3.3:-73701424 | MS.gene73789:CDS |
| GATGTTTGAGGGAAATGAGG+TGG | 0.643569 | 3.3:+73701950 | None:intergenic |
| CGTGTCAGCAAGAGAAACAC+CGG | 0.651572 | 3.3:+73701840 | None:intergenic |
| GAACATCAACAGGAATGGCA+TGG | 0.655759 | 3.3:+73701275 | None:intergenic |
| TGTCCCTCAAGTGTAAAGGT+AGG | 0.665958 | 3.3:+73700349 | None:intergenic |
| GAACTGGCGCAACATTTGAG+TGG | 0.700408 | 3.3:-73701781 | MS.gene73789:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAATCTAATTAACAG+AGG | + | chr3.3:73701794-73701813 | None:intergenic | 15.0% |
| !! | TTCTAATGTTGTAATAAAAT+TGG | - | chr3.3:73701271-73701290 | MS.gene73789:CDS | 15.0% |
| !!! | TGTTGTATTATTTTTTTCAT+GGG | - | chr3.3:73701728-73701747 | MS.gene73789:intron | 15.0% |
| !!! | TTGTTGTATTATTTTTTTCA+TGG | - | chr3.3:73701727-73701746 | MS.gene73789:intron | 15.0% |
| !!! | GTTGTATTATTTTTTTCATG+GGG | - | chr3.3:73701729-73701748 | MS.gene73789:intron | 20.0% |
| ! | AAACTATAAGAGAAACTGTT+AGG | - | chr3.3:73701596-73701615 | MS.gene73789:intron | 25.0% |
| ! | GTTCTATCATAAACCTTATT+TGG | + | chr3.3:73701649-73701668 | None:intergenic | 25.0% |
| ! | GTTTCATTACAGATTTAGAA+GGG | - | chr3.3:73701761-73701780 | MS.gene73789:CDS | 25.0% |
| ! | TATTAGTAGAATCACGAAAA+TGG | - | chr3.3:73700763-73700782 | MS.gene73789:intron | 25.0% |
| ! | TTGTTACCTATCAATAAGAT+GGG | - | chr3.3:73701244-73701263 | MS.gene73789:intron | 25.0% |
| ! | TTTGTTACCTATCAATAAGA+TGG | - | chr3.3:73701243-73701262 | MS.gene73789:intron | 25.0% |
| !! | AAGACAAATTTGATAGCAAA+AGG | - | chr3.3:73701338-73701357 | MS.gene73789:CDS | 25.0% |
| !! | AGACAAATTTGATAGCAAAA+GGG | - | chr3.3:73701339-73701358 | MS.gene73789:CDS | 25.0% |
| !! | CTTTTATCATTTTCAAACTG+GGG | - | chr3.3:73701921-73701940 | MS.gene73789:CDS | 25.0% |
| !! | GCTTTTATCATTTTCAAACT+GGG | - | chr3.3:73701920-73701939 | MS.gene73789:CDS | 25.0% |
| !! | TGAAGTATTTAAGCAAAAGT+AGG | + | chr3.3:73701221-73701240 | None:intergenic | 25.0% |
| !! | TGCTTTTATCATTTTCAAAC+TGG | - | chr3.3:73701919-73701938 | MS.gene73789:CDS | 25.0% |
| !!! | ATCTTGTAGAGTTTTATGAT+TGG | - | chr3.3:73701871-73701890 | MS.gene73789:CDS | 25.0% |
| !!! | ATTATTTTTTTCCGTGGTTT+AGG | - | chr3.3:73701377-73701396 | MS.gene73789:CDS | 25.0% |
| AAACTGAATCAAGCATTCAA+AGG | + | chr3.3:73700723-73700742 | None:intergenic | 30.0% | |
| AAATTGCCCATCTTATTGAT+AGG | + | chr3.3:73701253-73701272 | None:intergenic | 30.0% | |
| AACTGAATCAAGCATTCAAA+GGG | + | chr3.3:73700722-73700741 | None:intergenic | 30.0% | |
| AACTGTTAGGAAATATGTAG+AGG | - | chr3.3:73701609-73701628 | MS.gene73789:intron | 30.0% | |
| ACAAAGTATGGTAAATATGC+CGG | - | chr3.3:73702032-73702051 | MS.gene73789:CDS | 30.0% | |
| ACTTATTTAGGTGAAGTTGA+AGG | - | chr3.3:73700809-73700828 | MS.gene73789:intron | 30.0% | |
| ATATGTAGAGGTTAATGAGT+TGG | - | chr3.3:73701621-73701640 | MS.gene73789:intron | 30.0% | |
| CTTATTTAGGTGAAGTTGAA+GGG | - | chr3.3:73700810-73700829 | MS.gene73789:intron | 30.0% | |
| GATAGGGCTAAATATATAAC+TGG | - | chr3.3:73700998-73701017 | MS.gene73789:intron | 30.0% | |
| GGTTTCATTACAGATTTAGA+AGG | - | chr3.3:73701760-73701779 | MS.gene73789:CDS | 30.0% | |
| GTAGAAAAGTGGTATAAAAC+TGG | - | chr3.3:73701469-73701488 | MS.gene73789:intron | 30.0% | |
| ! | GTTTCTCTTATAGTTTTTCC+AGG | + | chr3.3:73701592-73701611 | None:intergenic | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+AGG | - | chr3.3:73701633-73701652 | MS.gene73789:intron | 30.0% |
| !! | TTATACCACTTTTCTACTGT+AGG | + | chr3.3:73701466-73701485 | None:intergenic | 30.0% |
| !!! | GTATTATTTTTTTCATGGGG+TGG | - | chr3.3:73701732-73701751 | MS.gene73789:intron | 30.0% |
| !!! | GTTGTCATTATTTTTTTCCG+TGG | - | chr3.3:73701371-73701390 | MS.gene73789:CDS | 30.0% |
| !!! | TGGTTGCTATTTTCTTGATA+GGG | - | chr3.3:73700982-73701001 | MS.gene73789:intron | 30.0% |
| AACATGAACATCAACAGGAA+TGG | + | chr3.3:73701188-73701207 | None:intergenic | 35.0% | |
| ACGAAGAGTAGATTAGATGT+AGG | - | chr3.3:73701539-73701558 | MS.gene73789:intron | 35.0% | |
| GTTCAGAAACTAATGAAAGC+TGG | + | chr3.3:73700865-73700884 | None:intergenic | 35.0% | |
| TCCCTCAAACATCTTCAAAA+CGG | - | chr3.3:73700515-73700534 | MS.gene73789:intron | 35.0% | |
| TGCTATCATTTATGCATGAC+TGG | - | chr3.3:73701841-73701860 | MS.gene73789:CDS | 35.0% | |
| TTCCTGTTGATGTTCATGTT+TGG | - | chr3.3:73701188-73701207 | MS.gene73789:intron | 35.0% | |
| TTGATTACGTTTCGTCTCTT+GGG | - | chr3.3:73700786-73700805 | MS.gene73789:intron | 35.0% | |
| TTGCTTGATTTCTTAAACGC+CGG | - | chr3.3:73700596-73700615 | MS.gene73789:intron | 35.0% | |
| ! | AAGTGGTATAAAACTGGCTT+AGG | - | chr3.3:73701475-73701494 | MS.gene73789:intron | 35.0% |
| ! | CTCGGGTAAGATATACTTTT+GGG | + | chr3.3:73701955-73701974 | None:intergenic | 35.0% |
| ! | CTGTTTTCTTCTATCTTTGC+GGG | + | chr3.3:73702146-73702165 | None:intergenic | 35.0% |
| ! | GAGGCTTTTGTAACAAAGTA+TGG | - | chr3.3:73702020-73702039 | MS.gene73789:CDS | 35.0% |
| !! | GCTGTTTTCTTCTATCTTTG+CGG | + | chr3.3:73702147-73702166 | None:intergenic | 35.0% |
| !! | TTTTGGTTACAGGTTAGGTT+AGG | - | chr3.3:73700904-73700923 | MS.gene73789:intron | 35.0% |
| !!! | GTGGTTGCTATTTTCTTGAT+AGG | - | chr3.3:73700981-73701000 | MS.gene73789:intron | 35.0% |
| !!! | TTATTTTTTTCATGGGGTGG+TGG | - | chr3.3:73701735-73701754 | MS.gene73789:intron | 35.0% |
| !!! | TTTTTTCCGTGGTTTAGGAA+TGG | - | chr3.3:73701382-73701401 | MS.gene73789:CDS | 35.0% |
| ACACCATTAGAGAGAGAGTT+GGG | - | chr3.3:73701434-73701453 | MS.gene73789:CDS | 40.0% | |
| AGGTAAGGATAGTTCTTGTC+GGG | + | chr3.3:73700411-73700430 | None:intergenic | 40.0% | |
| ATGTTTGAGGGAAATGAGGT+GGG | + | chr3.3:73700507-73700526 | None:intergenic | 40.0% | |
| ATTCCTAATCATATCCCGTC+TGG | + | chr3.3:73701413-73701432 | None:intergenic | 40.0% | |
| CAGTTCCGCAAATCTTTCAT+CGG | + | chr3.3:73700660-73700679 | None:intergenic | 40.0% | |
| CTCCAACGATGATTGCAAAA+CGG | - | chr3.3:73700571-73700590 | MS.gene73789:intron | 40.0% | |
| CTGTTGATGTTCATGTTTGG+CGG | - | chr3.3:73701191-73701210 | MS.gene73789:intron | 40.0% | |
| CTTCGTACTACAACATCTAC+AGG | + | chr3.3:73701525-73701544 | None:intergenic | 40.0% | |
| GAAAACAGCAAAGAAGAAGC+TGG | - | chr3.3:73702158-73702177 | MS.gene73789:CDS | 40.0% | |
| GAAGATGTTTGAGGGAAATG+AGG | + | chr3.3:73700511-73700530 | None:intergenic | 40.0% | |
| GAGGTAAGGATAGTTCTTGT+CGG | + | chr3.3:73700412-73700431 | None:intergenic | 40.0% | |
| GGATTCCGATGAAAGATTTG+CGG | - | chr3.3:73700652-73700671 | MS.gene73789:intron | 40.0% | |
| GTCTTACCATTCCTAAACCA+CGG | + | chr3.3:73701391-73701410 | None:intergenic | 40.0% | |
| GTGAAGTTTCTGTGTCAACT+TGG | + | chr3.3:73701988-73702007 | None:intergenic | 40.0% | |
| GTTGATTACGTTTCGTCTCT+TGG | - | chr3.3:73700785-73700804 | MS.gene73789:intron | 40.0% | |
| GTTTCGTGTGAATGTTAACG+TGG | - | chr3.3:73700962-73700981 | MS.gene73789:intron | 40.0% | |
| TAGCTCCTACAGTAGAAAAG+TGG | - | chr3.3:73701458-73701477 | MS.gene73789:intron | 40.0% | |
| TCGTCTCTTGGGACTTATTT+AGG | - | chr3.3:73700797-73700816 | MS.gene73789:intron | 40.0% | |
| TCTGAACTTTCCAAGTTACC+TGG | - | chr3.3:73701106-73701125 | MS.gene73789:intron | 40.0% | |
| TGTTGATGTTCATGTTTGGC+GGG | - | chr3.3:73701192-73701211 | MS.gene73789:intron | 40.0% | |
| TTAGGAATGGTAAGACCAGA+CGG | - | chr3.3:73701395-73701414 | MS.gene73789:CDS | 40.0% | |
| ! | AATGAAAGCTGGTTCAGAGT+AGG | + | chr3.3:73700854-73700873 | None:intergenic | 40.0% |
| ! | GCTCGGGTAAGATATACTTT+TGG | + | chr3.3:73701956-73701975 | None:intergenic | 40.0% |
| ! | GCTTTATTCTCTTCGCACTT+TGG | - | chr3.3:73701066-73701085 | MS.gene73789:intron | 40.0% |
| ! | GTTTTGCAATCATCGTTGGA+GGG | + | chr3.3:73700572-73700591 | None:intergenic | 40.0% |
| ! | TGGTATAAAACTGGCTTAGG+TGG | - | chr3.3:73701478-73701497 | MS.gene73789:intron | 40.0% |
| !!! | GCCGTTTTGAAGATGTTTGA+GGG | + | chr3.3:73700519-73700538 | None:intergenic | 40.0% |
| AAGAGGAGGAGGTAGTGATT+TGG | + | chr3.3:73700300-73700319 | None:intergenic | 45.0% | |
| AATCATCGTTGGAGGGAGAT+TGG | + | chr3.3:73700565-73700584 | None:intergenic | 45.0% | |
| AGACCAGACGGGATATGATT+AGG | - | chr3.3:73701407-73701426 | MS.gene73789:CDS | 45.0% | |
| AGTATGGTAAATATGCCGGC+TGG | - | chr3.3:73702036-73702055 | MS.gene73789:CDS | 45.0% | |
| AGTCAGATCAGAAGAGGTAG+TGG | - | chr3.3:73701562-73701581 | MS.gene73789:intron | 45.0% | |
| ATCATCGTTGGAGGGAGATT+GGG | + | chr3.3:73700564-73700583 | None:intergenic | 45.0% | |
| CACCATTAGAGAGAGAGTTG+GGG | - | chr3.3:73701435-73701454 | MS.gene73789:CDS | 45.0% | |
| CCTCAAGTGTAAAGGTAGGA+GGG | + | chr3.3:73702105-73702124 | None:intergenic | 45.0% | |
| CCTCCTACCTTTACACTTGA+GGG | - | chr3.3:73702103-73702122 | MS.gene73789:CDS | 45.0% | |
| CGATGAAAGATTTGCGGAAC+TGG | - | chr3.3:73700658-73700677 | MS.gene73789:intron | 45.0% | |
| CGCCAAACATGAACATCAAC+AGG | + | chr3.3:73701193-73701212 | None:intergenic | 45.0% | |
| CTTGTCGGGTTATGTTGAGA+GGG | + | chr3.3:73700397-73700416 | None:intergenic | 45.0% | |
| CTTTCCAAGTTACCTGGAGT+TGG | - | chr3.3:73701112-73701131 | MS.gene73789:intron | 45.0% | |
| GAACATCAACAGGAATGGCA+TGG | + | chr3.3:73701183-73701202 | None:intergenic | 45.0% | |
| GACACCATTAGAGAGAGAGT+TGG | - | chr3.3:73701433-73701452 | MS.gene73789:CDS | 45.0% | |
| GATGTTTGAGGGAAATGAGG+TGG | + | chr3.3:73700508-73700527 | None:intergenic | 45.0% | |
| GCTTTGCATTCAAAGCCTGA+AGG | - | chr3.3:73701031-73701050 | MS.gene73789:intron | 45.0% | |
| TACCCCAACTCTCTCTCTAA+TGG | + | chr3.3:73701440-73701459 | None:intergenic | 45.0% | |
| TAGGAATGGTAAGACCAGAC+GGG | - | chr3.3:73701396-73701415 | MS.gene73789:CDS | 45.0% | |
| TATATCTTACCCGAGCTTGC+AGG | - | chr3.3:73701960-73701979 | MS.gene73789:CDS | 45.0% | |
| TCTTGTCGGGTTATGTTGAG+AGG | + | chr3.3:73700398-73700417 | None:intergenic | 45.0% | |
| TGCATTCAAAGCCTGAAGGT+GGG | - | chr3.3:73701035-73701054 | MS.gene73789:intron | 45.0% | |
| TGTAGGAGTCAGATCAGAAG+AGG | - | chr3.3:73701556-73701575 | MS.gene73789:intron | 45.0% | |
| TGTCCCTCAAGTGTAAAGGT+AGG | + | chr3.3:73702109-73702128 | None:intergenic | 45.0% | |
| TTGCATTCAAAGCCTGAAGG+TGG | - | chr3.3:73701034-73701053 | MS.gene73789:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr3.3:73701702-73701721 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr3.3:73701703-73701722 | None:intergenic | 45.0% |
| ! | CGTTTTGCAATCATCGTTGG+AGG | + | chr3.3:73700573-73700592 | None:intergenic | 45.0% |
| ! | GCAACATTTGAGTGGTGCTA+GGG | - | chr3.3:73700682-73700701 | MS.gene73789:intron | 45.0% |
| ! | GCTATACAAGCAGCCACTTT+AGG | + | chr3.3:73701139-73701158 | None:intergenic | 45.0% |
| ! | GTATGGTAAATATGCCGGCT+GGG | - | chr3.3:73702037-73702056 | MS.gene73789:CDS | 45.0% |
| ! | TTGGTGTCCCTCAAGTGTAA+AGG | + | chr3.3:73702113-73702132 | None:intergenic | 45.0% |
| !!! | ATTTTGAGAGGTTGGTGGAG+TGG | + | chr3.3:73700361-73700380 | None:intergenic | 45.0% |
| !!! | CAACTAAGAGACGCTGGTTT+TGG | - | chr3.3:73700887-73700906 | MS.gene73789:intron | 45.0% |
| !!! | CGCCGTTTTGAAGATGTTTG+AGG | + | chr3.3:73700520-73700539 | None:intergenic | 45.0% |
| !!! | GCTGGTTTTGGTTACAGGTT+AGG | - | chr3.3:73700899-73700918 | MS.gene73789:intron | 45.0% |
| !!! | TGCCGTTTTGCAATCATCGT+TGG | + | chr3.3:73700576-73700595 | None:intergenic | 45.0% |
| !!! | TTTTTTCATGGGGTGGTGGA+GGG | - | chr3.3:73701739-73701758 | MS.gene73789:CDS | 45.0% |
| !!! | TTTTTTTCATGGGGTGGTGG+AGG | - | chr3.3:73701738-73701757 | MS.gene73789:intron | 45.0% |
| AACTTGGAACCTGCAAGCTC+GGG | + | chr3.3:73701972-73701991 | None:intergenic | 50.0% | |
| ACCGCTCCTTCTCAATTCAC+CGG | - | chr3.3:73700470-73700489 | MS.gene73789:CDS | 50.0% | |
| ACCTCTCAAAATCCCGGGTA+TGG | - | chr3.3:73700369-73700388 | MS.gene73789:CDS | 50.0% | |
| ACTTCACAGTCGTGTTGCAG+AGG | - | chr3.3:73702001-73702020 | MS.gene73789:CDS | 50.0% | |
| AGGACCAACTCCAGGTAACT+TGG | + | chr3.3:73701119-73701138 | None:intergenic | 50.0% | |
| CAACTTGGAACCTGCAAGCT+CGG | + | chr3.3:73701973-73701992 | None:intergenic | 50.0% | |
| CACCAACCTCTCAAAATCCC+GGG | - | chr3.3:73700364-73700383 | MS.gene73789:CDS | 50.0% | |
| CCACCAACCTCTCAAAATCC+CGG | - | chr3.3:73700363-73700382 | MS.gene73789:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr3.3:73701701-73701720 | MS.gene73789:intron | 50.0% | |
| CCCTCAAGTGTAAAGGTAGG+AGG | + | chr3.3:73702106-73702125 | None:intergenic | 50.0% | |
| CCCTCCTACCTTTACACTTG+AGG | - | chr3.3:73702102-73702121 | MS.gene73789:CDS | 50.0% | |
| CGCAACATTTGAGTGGTGCT+AGG | - | chr3.3:73700681-73700700 | MS.gene73789:intron | 50.0% | |
| CGTGTCAGCAAGAGAAACAC+CGG | + | chr3.3:73700618-73700637 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr3.3:73701698-73701717 | None:intergenic | 50.0% | |
| CTTTGCGGGATTCTTCTGCT+TGG | + | chr3.3:73702132-73702151 | None:intergenic | 50.0% | |
| GAACAGCAACTAAGAGACGC+TGG | - | chr3.3:73700881-73700900 | MS.gene73789:intron | 50.0% | |
| GAACTGGCGCAACATTTGAG+TGG | - | chr3.3:73700674-73700693 | MS.gene73789:intron | 50.0% | |
| GCATTCAAAGCCTGAAGGTG+GGG | - | chr3.3:73701036-73701055 | MS.gene73789:intron | 50.0% | |
| GCTTAGGTGGTTTGAGCATG+TGG | - | chr3.3:73701491-73701510 | MS.gene73789:intron | 50.0% | |
| GTGTTTCTCTTGCTGACACG+TGG | - | chr3.3:73700618-73700637 | MS.gene73789:intron | 50.0% | |
| TAAAACAGCTTGAGCCCAGC+CGG | + | chr3.3:73702054-73702073 | None:intergenic | 50.0% | |
| TGCCGAGTTGCCTTCACAAA+AGG | - | chr3.3:73702079-73702098 | MS.gene73789:CDS | 50.0% | |
| TGTTGAGAGGGATCCATACC+CGG | + | chr3.3:73700385-73700404 | None:intergenic | 50.0% | |
| TTCTCTTGCTGACACGTGGA+AGG | - | chr3.3:73700622-73700641 | MS.gene73789:intron | 50.0% | |
| TTTCCAGCGGAAGGTTTGAC+CGG | + | chr3.3:73700447-73700466 | None:intergenic | 50.0% | |
| ! | AAGGAGCGGTGTTTTTCCAG+CGG | + | chr3.3:73700460-73700479 | None:intergenic | 50.0% |
| ! | ACCTGGAGTTGGTCCTAAAG+TGG | - | chr3.3:73701123-73701142 | MS.gene73789:intron | 50.0% |
| ! | AGGAGGAGGTAGTGATTTGG+TGG | + | chr3.3:73700297-73700316 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr3.3:73701704-73701723 | None:intergenic | 50.0% |
| ! | GGCCTTTTGTGAAGGCAACT+CGG | + | chr3.3:73702084-73702103 | None:intergenic | 50.0% |
| ! | TCCATACCCGGGATTTTGAG+AGG | + | chr3.3:73700373-73700392 | None:intergenic | 50.0% |
| !! | AGAAGAGGTAGTGGAAGACC+TGG | - | chr3.3:73701571-73701590 | MS.gene73789:intron | 50.0% |
| !! | GGAGGAGGTAGTGATTTGGT+GGG | + | chr3.3:73700296-73700315 | None:intergenic | 50.0% |
| !! | TACCCGGGATTTTGAGAGGT+TGG | + | chr3.3:73700369-73700388 | None:intergenic | 50.0% |
| !! | TGACACGTGGAAGGTGTTCT+CGG | - | chr3.3:73700631-73700650 | MS.gene73789:intron | 50.0% |
| !!! | GAGACGCTGGTTTTGGTTAC+AGG | - | chr3.3:73700894-73700913 | MS.gene73789:intron | 50.0% |
| ACGACGCCGGTGAATTGAGA+AGG | + | chr3.3:73700479-73700498 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr3.3:73701690-73701709 | None:intergenic | 55.0% | |
| AGCCATTCTTCCCCACCTTC+AGG | + | chr3.3:73701049-73701068 | None:intergenic | 55.0% | |
| AGCCTGAAGGTGGGGAAGAA+TGG | - | chr3.3:73701044-73701063 | MS.gene73789:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr3.3:73701689-73701708 | MS.gene73789:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr3.3:73701696-73701715 | MS.gene73789:intron | 55.0% | |
| GCCGGTGAATTGAGAAGGAG+CGG | + | chr3.3:73700474-73700493 | None:intergenic | 55.0% | |
| GGAGGGAGATTGGGAGTGAA+GGG | + | chr3.3:73700555-73700574 | None:intergenic | 55.0% | |
| GTTGAAGGTGGAAGAGGAGG+AGG | + | chr3.3:73700311-73700330 | None:intergenic | 55.0% | |
| GTTGAGAGGGATCCATACCC+GGG | + | chr3.3:73700384-73700403 | None:intergenic | 55.0% | |
| TCTCAATTCACCGGCGTCGT+TGG | - | chr3.3:73700479-73700498 | MS.gene73789:CDS | 55.0% | |
| TGGAGGGAGATTGGGAGTGA+AGG | + | chr3.3:73700556-73700575 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr3.3:73701690-73701709 | MS.gene73789:intron | 55.0% | |
| TTACCTCTCACCTTCCCCAC+CGG | - | chr3.3:73700425-73700444 | MS.gene73789:CDS | 55.0% | |
| ! | AGCGGTGTTTTTCCAGCGGA+AGG | + | chr3.3:73700456-73700475 | None:intergenic | 55.0% |
| ! | GGTAGGAGGGCCTTTTGTGA+AGG | + | chr3.3:73702092-73702111 | None:intergenic | 55.0% |
| ! | GGTGGTGTTGAAGGTGGAAG+AGG | + | chr3.3:73700317-73700336 | None:intergenic | 55.0% |
| ! | GGTGTTGAAGGTGGAAGAGG+AGG | + | chr3.3:73700314-73700333 | None:intergenic | 55.0% |
| !! | CCGGGATTTTGAGAGGTTGG+TGG | + | chr3.3:73700366-73700385 | None:intergenic | 55.0% |
| !! | GCCACTTTAGGACCAACTCC+AGG | + | chr3.3:73701127-73701146 | None:intergenic | 55.0% |
| !! | GGTGTTGGTGGTGTTGAAGG+TGG | + | chr3.3:73700323-73700342 | None:intergenic | 55.0% |
| !! | GTTTGGGTTTGGGGTGTTGG+TGG | + | chr3.3:73700335-73700354 | None:intergenic | 55.0% |
| !! | TGGGGTGTTGGTGGTGTTGA+AGG | + | chr3.3:73700326-73700345 | None:intergenic | 55.0% |
| !! | TTGAGAGGTTGGTGGAGTGG+CGG | + | chr3.3:73700358-73700377 | None:intergenic | 55.0% |
| AGCGGAAGGTTTGACCGGTG+GGG | + | chr3.3:73700442-73700461 | None:intergenic | 60.0% | |
| CAGCGGAAGGTTTGACCGGT+GGG | + | chr3.3:73700443-73700462 | None:intergenic | 60.0% | |
| GAAGGTTTGACCGGTGGGGA+AGG | + | chr3.3:73700438-73700457 | None:intergenic | 60.0% | |
| GGTGGGGAAGGTGAGAGGTA+AGG | + | chr3.3:73700426-73700445 | None:intergenic | 60.0% | |
| ! | CGGGTTTGGGTTTGGGGTGT+TGG | + | chr3.3:73700338-73700357 | None:intergenic | 60.0% |
| !! | GAGTGGCGGGTTTGGGTTTG+GGG | + | chr3.3:73700344-73700363 | None:intergenic | 60.0% |
| !! | GGAGTGGCGGGTTTGGGTTT+GGG | + | chr3.3:73700345-73700364 | None:intergenic | 60.0% |
| !! | GTTGGTGGAGTGGCGGGTTT+GGG | + | chr3.3:73700351-73700370 | None:intergenic | 60.0% |
| !! | TGAGAGGTTGGTGGAGTGGC+GGG | + | chr3.3:73700357-73700376 | None:intergenic | 60.0% |
| !! | TGGAGTGGCGGGTTTGGGTT+TGG | + | chr3.3:73700346-73700365 | None:intergenic | 60.0% |
| CCACCGGTCAAACCTTCCGC+TGG | - | chr3.3:73700441-73700460 | MS.gene73789:CDS | 65.0% | |
| CCAGCGGAAGGTTTGACCGG+TGG | + | chr3.3:73700444-73700463 | None:intergenic | 65.0% | |
| TGACCGGTGGGGAAGGTGAG+AGG | + | chr3.3:73700431-73700450 | None:intergenic | 65.0% | |
| !! | GGTTGGTGGAGTGGCGGGTT+TGG | + | chr3.3:73700352-73700371 | None:intergenic | 65.0% |
| GAGGTGGGAGCCAACGACGC+CGG | + | chr3.3:73700492-73700511 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 73700272 | 73702205 | 73700272 | ID=MS.gene73789 |
| chr3.3 | mRNA | 73700272 | 73702205 | 73700272 | ID=MS.gene73789.t1;Parent=MS.gene73789 |
| chr3.3 | exon | 73701739 | 73702205 | 73701739 | ID=MS.gene73789.t1.exon1;Parent=MS.gene73789.t1 |
| chr3.3 | CDS | 73701739 | 73702205 | 73701739 | ID=cds.MS.gene73789.t1;Parent=MS.gene73789.t1 |
| chr3.3 | exon | 73701264 | 73701474 | 73701264 | ID=MS.gene73789.t1.exon2;Parent=MS.gene73789.t1 |
| chr3.3 | CDS | 73701264 | 73701474 | 73701264 | ID=cds.MS.gene73789.t1;Parent=MS.gene73789.t1 |
| chr3.3 | exon | 73700272 | 73700529 | 73700272 | ID=MS.gene73789.t1.exon3;Parent=MS.gene73789.t1 |
| chr3.3 | CDS | 73700272 | 73700529 | 73700272 | ID=cds.MS.gene73789.t1;Parent=MS.gene73789.t1 |
| Gene Sequence |
| Protein sequence |
