Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004575.t1 | XP_013463257.1 | 98.2 | 221 | 2 | 1 | 1 | 219 | 1 | 221 | 9.80E-114 | 419.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004575.t1 | O23429 | 86.9 | 222 | 26 | 2 | 1 | 219 | 1 | 222 | 1.9e-105 | 383.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004575.t1 | B7FI15 | 98.2 | 221 | 2 | 1 | 1 | 219 | 1 | 221 | 7.1e-114 | 419.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016966 | MS.gene004575 | PPI |
| MS.gene70862 | MS.gene004575 | PPI |
| MS.gene65117 | MS.gene004575 | PPI |
| MS.gene47655 | MS.gene004575 | PPI |
| MS.gene66057 | MS.gene004575 | PPI |
| MS.gene66728 | MS.gene004575 | PPI |
| MS.gene78212 | MS.gene004575 | PPI |
| MS.gene77217 | MS.gene004575 | PPI |
| MS.gene88213 | MS.gene004575 | PPI |
| MS.gene004575 | MS.gene029336 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004575.t1 | MTR_2g436870 | 98.190 | 221 | 2 | 1 | 1 | 219 | 1 | 221 | 8.64e-163 | 448 |
| MS.gene004575.t1 | MTR_1g047720 | 67.123 | 219 | 70 | 1 | 1 | 217 | 1 | 219 | 9.61e-114 | 324 |
| MS.gene004575.t1 | MTR_4g022570 | 70.776 | 219 | 62 | 1 | 1 | 217 | 1 | 219 | 6.61e-110 | 314 |
| MS.gene004575.t1 | MTR_7g058900 | 70.000 | 220 | 64 | 1 | 1 | 218 | 1 | 220 | 2.98e-106 | 305 |
| MS.gene004575.t1 | MTR_4g083490 | 66.495 | 194 | 63 | 1 | 2 | 193 | 4 | 197 | 3.68e-98 | 285 |
| MS.gene004575.t1 | MTR_2g028790 | 63.918 | 194 | 68 | 1 | 2 | 193 | 6 | 199 | 7.72e-95 | 276 |
| MS.gene004575.t1 | MTR_7g058640 | 63.077 | 195 | 70 | 1 | 1 | 193 | 1 | 195 | 3.90e-91 | 266 |
| MS.gene004575.t1 | MTR_1g111890 | 50.840 | 238 | 96 | 2 | 1 | 217 | 1 | 238 | 1.81e-87 | 258 |
| MS.gene004575.t1 | MTR_7g058640 | 61.628 | 172 | 64 | 1 | 1 | 170 | 1 | 172 | 1.91e-76 | 229 |
| MS.gene004575.t1 | MTR_1g047710 | 60.150 | 133 | 53 | 0 | 53 | 185 | 3 | 135 | 2.40e-56 | 176 |
| MS.gene004575.t1 | MTR_7g058640 | 64.957 | 117 | 41 | 0 | 77 | 193 | 1 | 117 | 2.05e-52 | 166 |
| MS.gene004575.t1 | MTR_4g022470 | 69.091 | 110 | 34 | 0 | 60 | 169 | 8 | 117 | 8.43e-51 | 160 |
| MS.gene004575.t1 | MTR_5g089370 | 35.545 | 211 | 131 | 4 | 7 | 214 | 4 | 212 | 9.18e-39 | 133 |
| MS.gene004575.t1 | MTR_4g052550 | 31.925 | 213 | 140 | 4 | 5 | 214 | 2 | 212 | 1.17e-37 | 130 |
| MS.gene004575.t1 | MTR_4g115390 | 28.372 | 215 | 145 | 4 | 7 | 214 | 4 | 216 | 6.30e-31 | 113 |
| MS.gene004575.t1 | MTR_4g022550 | 68.852 | 61 | 19 | 0 | 157 | 217 | 11 | 71 | 9.29e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004575.t1 | AT4G15780 | 87.709 | 179 | 19 | 2 | 1 | 176 | 1 | 179 | 1.09e-115 | 328 |
| MS.gene004575.t1 | AT1G04760 | 67.273 | 220 | 70 | 1 | 1 | 218 | 1 | 220 | 1.95e-107 | 308 |
| MS.gene004575.t1 | AT1G04760 | 67.273 | 220 | 70 | 1 | 1 | 218 | 1 | 220 | 1.95e-107 | 308 |
| MS.gene004575.t1 | AT2G33120 | 70.455 | 220 | 63 | 1 | 1 | 218 | 1 | 220 | 2.90e-107 | 308 |
| MS.gene004575.t1 | AT2G32670 | 69.545 | 220 | 65 | 1 | 1 | 218 | 66 | 285 | 9.83e-107 | 309 |
| MS.gene004575.t1 | AT2G33120 | 67.982 | 228 | 63 | 1 | 1 | 218 | 1 | 228 | 7.43e-106 | 305 |
| MS.gene004575.t1 | AT1G04750 | 68.950 | 219 | 66 | 1 | 1 | 217 | 1 | 219 | 8.04e-105 | 301 |
| MS.gene004575.t1 | AT3G54300 | 51.250 | 240 | 96 | 3 | 1 | 219 | 1 | 240 | 9.11e-89 | 261 |
| MS.gene004575.t1 | AT3G54300 | 51.250 | 240 | 96 | 3 | 1 | 219 | 1 | 240 | 9.11e-89 | 261 |
| MS.gene004575.t1 | AT3G54300 | 51.250 | 240 | 96 | 3 | 1 | 219 | 1 | 240 | 9.11e-89 | 261 |
| MS.gene004575.t1 | AT2G33110 | 58.904 | 219 | 84 | 2 | 1 | 217 | 1 | 215 | 3.99e-82 | 244 |
| MS.gene004575.t1 | AT2G33110 | 63.462 | 156 | 55 | 1 | 1 | 154 | 1 | 156 | 1.73e-68 | 208 |
| MS.gene004575.t1 | AT1G04750 | 68.085 | 141 | 45 | 0 | 77 | 217 | 1 | 141 | 3.68e-59 | 183 |
| MS.gene004575.t1 | AT1G04750 | 68.085 | 141 | 45 | 0 | 77 | 217 | 1 | 141 | 3.68e-59 | 183 |
| MS.gene004575.t1 | AT1G04750 | 68.085 | 141 | 45 | 0 | 77 | 217 | 1 | 141 | 3.68e-59 | 183 |
| MS.gene004575.t1 | AT5G22360 | 33.178 | 214 | 137 | 4 | 5 | 214 | 2 | 213 | 3.03e-42 | 142 |
| MS.gene004575.t1 | AT5G11150 | 33.645 | 214 | 136 | 4 | 5 | 214 | 2 | 213 | 1.16e-40 | 138 |
| MS.gene004575.t1 | AT5G11150 | 33.645 | 214 | 136 | 4 | 5 | 214 | 2 | 213 | 1.58e-40 | 138 |
| MS.gene004575.t1 | AT4G32150 | 34.737 | 190 | 119 | 4 | 5 | 191 | 2 | 189 | 8.26e-37 | 128 |
| MS.gene004575.t1 | AT2G25340 | 32.632 | 190 | 123 | 4 | 5 | 191 | 2 | 189 | 3.21e-31 | 114 |
| MS.gene004575.t1 | AT2G33120 | 72.093 | 86 | 24 | 0 | 132 | 217 | 52 | 137 | 1.05e-30 | 110 |
| MS.gene004575.t1 | AT3G24890 | 42.268 | 97 | 42 | 2 | 112 | 198 | 15 | 107 | 9.49e-19 | 79.0 |
Find 33 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTGAACAAGGAATT+TGG | 0.190475 | 2.2:-52301514 | MS.gene004575:CDS |
| TCAGAACATGAAAATTAAAT+TGG | 0.225912 | 2.2:-52300261 | MS.gene004575:CDS |
| AAAATTAAATTGGTTGTTCT+TGG | 0.225914 | 2.2:-52300251 | MS.gene004575:CDS |
| AAATTCCTTGTTCAGACTTT+TGG | 0.253010 | 2.2:+52301516 | None:intergenic |
| CTGCTTGCTAACAGATTCTT+TGG | 0.273100 | 2.2:+52301618 | None:intergenic |
| ACTGTAGGTGAACTTGTTAT+TGG | 0.347549 | 2.2:+52303412 | None:intergenic |
| TTCATGTGCTCTTTCATAAT+CGG | 0.353938 | 2.2:+52301397 | None:intergenic |
| AGTCAGCTTTGACACGTTCA+AGG | 0.435569 | 2.2:+52301581 | None:intergenic |
| GTTATCTGGCTCTCTATTTG+TGG | 0.442264 | 2.2:-52300206 | MS.gene004575:CDS |
| AAAGTCTGAACAAGGAATTT+GGG | 0.465281 | 2.2:-52301513 | MS.gene004575:intron |
| GTGAACTTGTTATTGGAAGA+AGG | 0.469932 | 2.2:+52303419 | None:intergenic |
| ATCTGGCTCTCTATTTGTGG+TGG | 0.485999 | 2.2:-52300203 | MS.gene004575:CDS |
| AGACACTGAGCTGCAATGGC+AGG | 0.504015 | 2.2:+52303452 | None:intergenic |
| CTGAAGACACTGAGCTGCAA+TGG | 0.506758 | 2.2:+52303448 | None:intergenic |
| ATCTTCGACAAGAAAATTGA+AGG | 0.507938 | 2.2:+52303376 | None:intergenic |
| CACAGGTCCGTCGGAAGATG+TGG | 0.530944 | 2.2:-52300286 | MS.gene004575:CDS |
| ATATACAGCTTTGTAGCTCG+TGG | 0.541984 | 2.2:-52303518 | MS.gene004575:CDS |
| GCTGACTTTAAGAAAAGATA+CGG | 0.549060 | 2.2:-52301565 | MS.gene004575:CDS |
| GCTGAGTACACCGAGTTCAC+TGG | 0.552986 | 2.2:-52303482 | MS.gene004575:CDS |
| TGAAAAGCTATTAAAAGTGA+AGG | 0.564756 | 2.2:-52301347 | MS.gene004575:CDS |
| CAAGAAAATTGAAGGTGTGA+TGG | 0.566358 | 2.2:+52303384 | None:intergenic |
| GACACGTTCAAGGAAAGCAA+TGG | 0.576248 | 2.2:+52301591 | None:intergenic |
| GCTCAAGATTTCAGAAAGCA+AGG | 0.582915 | 2.2:-52300311 | MS.gene004575:CDS |
| AGGAAAGTTACCAGTGAACT+CGG | 0.587842 | 2.2:+52303472 | None:intergenic |
| TTTCAGAAAGCAAGGAACAC+AGG | 0.591739 | 2.2:-52300303 | MS.gene004575:CDS |
| AGCAAGGAACACAGGTCCGT+CGG | 0.592470 | 2.2:-52300295 | MS.gene004575:CDS |
| TTTAAGAAAAGATACGGTGG+TGG | 0.612427 | 2.2:-52301559 | MS.gene004575:CDS |
| TATTGCCAAAAGTCTGAACA+AGG | 0.635316 | 2.2:-52301521 | MS.gene004575:CDS |
| CTTTGTAGCTCGTGGAACGA+TGG | 0.636038 | 2.2:-52303510 | MS.gene004575:CDS |
| CATGTTAGAAAATATAGACA+AGG | 0.648118 | 2.2:-52301299 | MS.gene004575:intron |
| GGTGTGATGGTCACAACTGT+AGG | 0.651595 | 2.2:+52303397 | None:intergenic |
| TCTGATACCACATCTTCCGA+CGG | 0.674197 | 2.2:+52300279 | None:intergenic |
| GACTTTAAGAAAAGATACGG+TGG | 0.697543 | 2.2:-52301562 | MS.gene004575:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTATATTAAATTT+GGG | - | chr2.2:52300935-52300954 | MS.gene004575:intron | 0.0% |
| !!! | TTATTTTTTTATATTAAATT+TGG | - | chr2.2:52300934-52300953 | MS.gene004575:intron | 0.0% |
| !! | AAAAATAATTCTTAGAATTT+CGG | + | chr2.2:52300922-52300941 | None:intergenic | 10.0% |
| !! | GTATAAAATGTTTAATAATA+TGG | - | chr2.2:52302285-52302304 | MS.gene004575:intron | 10.0% |
| !! | ATAAAAGCTTATTATTAGTA+AGG | - | chr2.2:52301708-52301727 | MS.gene004575:intron | 15.0% |
| !! | CAAATATAGACAATAATTAA+TGG | + | chr2.2:52301465-52301484 | None:intergenic | 15.0% |
| !! | CATTAATTATTGTCTATATT+TGG | - | chr2.2:52301463-52301482 | MS.gene004575:intron | 15.0% |
| !!! | TTTTAGAAAAAGATAAACTT+TGG | - | chr2.2:52301527-52301546 | MS.gene004575:CDS | 15.0% |
| !! | AAAATTAAATTGGTTGTTCT+TGG | - | chr2.2:52303469-52303488 | MS.gene004575:CDS | 20.0% |
| !! | ATTATTGTCTATATTTGGAT+TGG | - | chr2.2:52301468-52301487 | MS.gene004575:intron | 20.0% |
| !! | ATTCAAAAACCGTATTAAAA+TGG | + | chr2.2:52301000-52301019 | None:intergenic | 20.0% |
| !! | CCAGTAATTATTTGAAAAAA+TGG | - | chr2.2:52302853-52302872 | MS.gene004575:intron | 20.0% |
| !! | CTTAAATAGAGCTTAAAATA+AGG | + | chr2.2:52303178-52303197 | None:intergenic | 20.0% |
| !! | TCAGAACATGAAAATTAAAT+TGG | - | chr2.2:52303459-52303478 | MS.gene004575:CDS | 20.0% |
| !! | TGTAATTAAAGAACATTGAA+AGG | - | chr2.2:52301414-52301433 | MS.gene004575:intron | 20.0% |
| !! | TTTATATTAAATTTGGGGAA+GGG | - | chr2.2:52300941-52300960 | MS.gene004575:intron | 20.0% |
| !! | TTTATTGAGTTCTCTAATTA+AGG | - | chr2.2:52300631-52300650 | MS.gene004575:intron | 20.0% |
| !!! | AAAATGGATTGTAAATTAGT+AGG | + | chr2.2:52302536-52302555 | None:intergenic | 20.0% |
| !!! | AAGTATTTGTTTTTGGATTT+TGG | - | chr2.2:52301098-52301117 | MS.gene004575:intron | 20.0% |
| !!! | ATAAGCTTTTATATGTTTGT+AGG | + | chr2.2:52301700-52301719 | None:intergenic | 20.0% |
| !!! | ATCTTTTTCTAAAATCACAA+TGG | + | chr2.2:52301521-52301540 | None:intergenic | 20.0% |
| !!! | ATTAAGGTAAATGATTTTTG+TGG | - | chr2.2:52300665-52300684 | MS.gene004575:intron | 20.0% |
| !!! | ATTAGTTATGCATTCTTTTT+AGG | - | chr2.2:52301139-52301158 | MS.gene004575:intron | 20.0% |
| !!! | ATTTTAATACGGTTTTTGAA+TGG | - | chr2.2:52300999-52301018 | MS.gene004575:intron | 20.0% |
| !!! | CCATTTTTTCAAATAATTAC+TGG | + | chr2.2:52302856-52302875 | None:intergenic | 20.0% |
| !!! | CTTTAATCATTTATGTTTTC+AGG | - | chr2.2:52303247-52303266 | MS.gene004575:intron | 20.0% |
| !!! | GAAAAGATTTTGTAATTTTC+AGG | - | chr2.2:52303387-52303406 | MS.gene004575:CDS | 20.0% |
| !!! | TTTAAAATCTAAGCAAACAA+CGG | + | chr2.2:52301999-52302018 | None:intergenic | 20.0% |
| !!! | TTTTATATTAAATTTGGGGA+AGG | - | chr2.2:52300940-52300959 | MS.gene004575:intron | 20.0% |
| ! | AAATGTTAAGAACAATGTGA+AGG | - | chr2.2:52302726-52302745 | MS.gene004575:intron | 25.0% |
| ! | ACAACAGTGATTAAATGATT+AGG | + | chr2.2:52303040-52303059 | None:intergenic | 25.0% |
| ! | CATGTTAGAAAATATAGACA+AGG | - | chr2.2:52302421-52302440 | MS.gene004575:intron | 25.0% |
| ! | TAAAGGATTGACAAAATGAT+CGG | + | chr2.2:52301227-52301246 | None:intergenic | 25.0% |
| ! | TGAAAAGCTATTAAAAGTGA+AGG | - | chr2.2:52302373-52302392 | MS.gene004575:intron | 25.0% |
| ! | TGTCATTAGATGATTAAATC+CGG | - | chr2.2:52300705-52300724 | MS.gene004575:intron | 25.0% |
| !! | AAAGAACATTGAAAGGATTT+TGG | - | chr2.2:52301421-52301440 | MS.gene004575:intron | 25.0% |
| !! | AATCTGAATTGTGTGTTTTT+AGG | - | chr2.2:52300466-52300485 | MS.gene004575:intron | 25.0% |
| !! | ATTTTAAGCTCTATTTAAGC+TGG | - | chr2.2:52303179-52303198 | MS.gene004575:intron | 25.0% |
| !! | GAAGTATTAAGAATTTGAGA+GGG | + | chr2.2:52302687-52302706 | None:intergenic | 25.0% |
| !! | TAATAGCTTTTCAATCTCTT+CGG | + | chr2.2:52302366-52302385 | None:intergenic | 25.0% |
| !! | TGAAGTATTAAGAATTTGAG+AGG | + | chr2.2:52302688-52302707 | None:intergenic | 25.0% |
| !! | TGTGGAATGTTGTTATATTT+TGG | - | chr2.2:52300560-52300579 | MS.gene004575:intron | 25.0% |
| !! | TTGCTTAGATTTTAAACATC+AGG | - | chr2.2:52302003-52302022 | MS.gene004575:intron | 25.0% |
| !!! | AAAGGATTTTGGAATGATTA+CGG | - | chr2.2:52301432-52301451 | MS.gene004575:intron | 25.0% |
| !!! | CACTAATGACCATTTTAATA+CGG | - | chr2.2:52300988-52301007 | MS.gene004575:intron | 25.0% |
| !!! | GCTTAAAGTTTTGATCTTTT+TGG | - | chr2.2:52300509-52300528 | MS.gene004575:intron | 25.0% |
| !!! | TAAAGTTTGTTGACATCTTT+AGG | - | chr2.2:52302246-52302265 | MS.gene004575:intron | 25.0% |
| !!! | TAAGGTTTGTTAGTCAATTA+AGG | - | chr2.2:52300649-52300668 | MS.gene004575:intron | 25.0% |
| !!! | TAGTTTTTGAGTTGTGATTA+GGG | - | chr2.2:52301308-52301327 | MS.gene004575:CDS | 25.0% |
| !!! | TTCACGTTTTCTCTAAAAAT+GGG | - | chr2.2:52302554-52302573 | MS.gene004575:intron | 25.0% |
| !!! | TTTCACGTTTTCTCTAAAAA+TGG | - | chr2.2:52302553-52302572 | MS.gene004575:intron | 25.0% |
| !!! | TTTTAGAGAAAACGTGAAAA+TGG | + | chr2.2:52302552-52302571 | None:intergenic | 25.0% |
| !!! | TTTTGGTGATTGAAGTAAAT+AGG | - | chr2.2:52300577-52300596 | MS.gene004575:intron | 25.0% |
| AAAAACAAATACTTCTAGCC+TGG | + | chr2.2:52301092-52301111 | None:intergenic | 30.0% | |
| AAAAGTCTGAACAAGGAATT+TGG | - | chr2.2:52302206-52302225 | MS.gene004575:intron | 30.0% | |
| AAAGTCTGAACAAGGAATTT+GGG | - | chr2.2:52302207-52302226 | MS.gene004575:intron | 30.0% | |
| AACAATGTGAAGGACATAAT+TGG | - | chr2.2:52302736-52302755 | MS.gene004575:intron | 30.0% | |
| AGACAATGCAAGAAATTCAT+AGG | + | chr2.2:52303115-52303134 | None:intergenic | 30.0% | |
| ATAACTGTGGTAGAAAATGA+TGG | + | chr2.2:52302498-52302517 | None:intergenic | 30.0% | |
| ATAATTCTTAGAATTTCGGC+TGG | + | chr2.2:52300918-52300937 | None:intergenic | 30.0% | |
| ATCTTCGACAAGAAAATTGA+AGG | + | chr2.2:52300347-52300366 | None:intergenic | 30.0% | |
| ATGCAAACATTGTTCAAACA+AGG | - | chr2.2:52301256-52301275 | MS.gene004575:intron | 30.0% | |
| CAATAATCAGGGATATTGAT+GGG | - | chr2.2:52301197-52301216 | MS.gene004575:intron | 30.0% | |
| CCTAACTCAACTTATAAAAC+CGG | + | chr2.2:52300894-52300913 | None:intergenic | 30.0% | |
| TAACTGTGGTAGAAAATGAT+GGG | + | chr2.2:52302497-52302516 | None:intergenic | 30.0% | |
| TAATTCTTAGAATTTCGGCT+GGG | + | chr2.2:52300917-52300936 | None:intergenic | 30.0% | |
| TCAATAATCAGGGATATTGA+TGG | - | chr2.2:52301196-52301215 | MS.gene004575:intron | 30.0% | |
| TGCAAACATTGTTCAAACAA+GGG | - | chr2.2:52301257-52301276 | MS.gene004575:intron | 30.0% | |
| TGTTATATTTAGTGAGAGCA+TGG | + | chr2.2:52301929-52301948 | None:intergenic | 30.0% | |
| TTCATGTGCTCTTTCATAAT+CGG | + | chr2.2:52302326-52302345 | None:intergenic | 30.0% | |
| TTCTACCACAGTTATCATTA+TGG | - | chr2.2:52302503-52302522 | MS.gene004575:intron | 30.0% | |
| ! | AAATTCCTTGTTCAGACTTT+TGG | + | chr2.2:52302207-52302226 | None:intergenic | 30.0% |
| ! | AGTTACTCAAAGTTTCAAGT+GGG | + | chr2.2:52303083-52303102 | None:intergenic | 30.0% |
| ! | GCTGACTTTAAGAAAAGATA+CGG | - | chr2.2:52302155-52302174 | MS.gene004575:intron | 30.0% |
| ! | TGTTTATTTCCGAAACCTTT+TGG | + | chr2.2:52301677-52301696 | None:intergenic | 30.0% |
| ! | TTCAATTTTCTTGTCGAAGA+TGG | - | chr2.2:52300346-52300365 | MS.gene004575:intron | 30.0% |
| !! | TCCATTTTTCCAAAAGGTTT+CGG | - | chr2.2:52301665-52301684 | MS.gene004575:intron | 30.0% |
| !!! | AATTCTGTTGTTTTTGGTTC+TGG | - | chr2.2:52303492-52303511 | MS.gene004575:CDS | 30.0% |
| !!! | AGACAAGGTACTGTTTTTTT+AGG | - | chr2.2:52302436-52302455 | MS.gene004575:intron | 30.0% |
| !!! | AGGCTAGAAGTATTTGTTTT+TGG | - | chr2.2:52301091-52301110 | MS.gene004575:intron | 30.0% |
| !!! | GGTTTTTGAGTTGATTTTAG+TGG | - | chr2.2:52300530-52300549 | MS.gene004575:intron | 30.0% |
| !!! | GTAGTTTTTGAGTTGTGATT+AGG | - | chr2.2:52301307-52301326 | MS.gene004575:CDS | 30.0% |
| !!! | TCTTGGAATTCTGTTGTTTT+TGG | - | chr2.2:52303486-52303505 | MS.gene004575:CDS | 30.0% |
| !!! | TTTGAGTTGATTTTAGTGGT+GGG | - | chr2.2:52300534-52300553 | MS.gene004575:intron | 30.0% |
| !!! | TTTTGAGTTGATTTTAGTGG+TGG | - | chr2.2:52300533-52300552 | MS.gene004575:intron | 30.0% |
| AAAACAATGCTGTCTAACCT+TGG | + | chr2.2:52303344-52303363 | None:intergenic | 35.0% | |
| AACATTGCAATATGTAGCAC+TGG | + | chr2.2:52302969-52302988 | None:intergenic | 35.0% | |
| AGGATCCATAATGATAACTG+TGG | + | chr2.2:52302511-52302530 | None:intergenic | 35.0% | |
| CAGTTACTCAAAGTTTCAAG+TGG | + | chr2.2:52303084-52303103 | None:intergenic | 35.0% | |
| GATTTGAACTCAATACCTTG+AGG | - | chr2.2:52301021-52301040 | MS.gene004575:intron | 35.0% | |
| GCTGCAATTTATAGAAAGCA+CGG | + | chr2.2:52302068-52302087 | None:intergenic | 35.0% | |
| GGATTGTAAATTAGTAGGAC+AGG | + | chr2.2:52302531-52302550 | None:intergenic | 35.0% | |
| GTTTGCATGACTATCACTAA+AGG | + | chr2.2:52301244-52301263 | None:intergenic | 35.0% | |
| TATTGCCAAAAGTCTGAACA+AGG | - | chr2.2:52302199-52302218 | MS.gene004575:intron | 35.0% | |
| TGATTAGGGTGCAATAGAAA+TGG | - | chr2.2:52301322-52301341 | MS.gene004575:CDS | 35.0% | |
| TGTTATTAGCTGCCTAATTG+CGG | - | chr2.2:52300735-52300754 | MS.gene004575:intron | 35.0% | |
| TTGGAGCTTCAACAAAATCA+CGG | - | chr2.2:52301546-52301565 | MS.gene004575:CDS | 35.0% | |
| TTTAAGAAAAGATACGGTGG+TGG | - | chr2.2:52302161-52302180 | MS.gene004575:intron | 35.0% | |
| TTTCTTGTCGAAGATGGTTA+TGG | - | chr2.2:52300352-52300371 | MS.gene004575:intron | 35.0% | |
| ! | ATATTTAGTGAGAGCATGGA+AGG | + | chr2.2:52301925-52301944 | None:intergenic | 35.0% |
| ! | CAAGAAAATTGAAGGTGTGA+TGG | + | chr2.2:52300339-52300358 | None:intergenic | 35.0% |
| ! | GACTTTAAGAAAAGATACGG+TGG | - | chr2.2:52302158-52302177 | MS.gene004575:intron | 35.0% |
| ! | GTAGAAAATGATGGGATATC+AGG | + | chr2.2:52302489-52302508 | None:intergenic | 35.0% |
| !! | ACTGTAGGTGAACTTGTTAT+TGG | + | chr2.2:52300311-52300330 | None:intergenic | 35.0% |
| !! | ACTTATAAAACCGGCTTGTA+AGG | + | chr2.2:52300885-52300904 | None:intergenic | 35.0% |
| !! | CCGGTTTTATAAGTTGAGTT+AGG | - | chr2.2:52300891-52300910 | MS.gene004575:intron | 35.0% |
| !! | GTGAACTTGTTATTGGAAGA+AGG | + | chr2.2:52300304-52300323 | None:intergenic | 35.0% |
| !! | GTTTTCTCTAAAAATGGGAG+TGG | - | chr2.2:52302559-52302578 | MS.gene004575:intron | 35.0% |
| !! | TACAGCTCCATTTTTCCAAA+AGG | - | chr2.2:52301659-52301678 | MS.gene004575:intron | 35.0% |
| !! | TCCGAAACCTTTTGGAAAAA+TGG | + | chr2.2:52301669-52301688 | None:intergenic | 35.0% |
| !! | TGTTTTCAGGCTATTGATAG+AGG | - | chr2.2:52303260-52303279 | MS.gene004575:intron | 35.0% |
| !!! | AATTGTGTGTTTTTAGGCGA+TGG | - | chr2.2:52300472-52300491 | MS.gene004575:intron | 35.0% |
| !!! | GGTACTGTTTTTTTAGGAAC+AGG | - | chr2.2:52302442-52302461 | MS.gene004575:intron | 35.0% |
| !!! | GTTTTTTTAGGAACAGGACT+TGG | - | chr2.2:52302448-52302467 | MS.gene004575:intron | 35.0% |
| !!! | TGTTTTTGGTTCTGGTTATC+TGG | - | chr2.2:52303500-52303519 | MS.gene004575:CDS | 35.0% |
| AAGGGTTAATCTTGTGTCTG+TGG | - | chr2.2:52301275-52301294 | MS.gene004575:intron | 40.0% | |
| AAGTTGACTATGTGCACGTT+TGG | + | chr2.2:52301605-52301624 | None:intergenic | 40.0% | |
| AATGGATGGTCATTGATCAG+TGG | - | chr2.2:52301340-52301359 | MS.gene004575:CDS | 40.0% | |
| ACTACACAGACCATATCTCT+AGG | + | chr2.2:52300838-52300857 | None:intergenic | 40.0% | |
| AGGAAAGTTACCAGTGAACT+CGG | + | chr2.2:52300251-52300270 | None:intergenic | 40.0% | |
| CACTCAACACAATGAAGTGT+TGG | + | chr2.2:52300787-52300806 | None:intergenic | 40.0% | |
| CAGCTAATAACACTTGTAGC+CGG | + | chr2.2:52300727-52300746 | None:intergenic | 40.0% | |
| GAGCTGTAGAAGTAGAAAGT+TGG | + | chr2.2:52301647-52301666 | None:intergenic | 40.0% | |
| GCCTTGTCTGTCAATAATCA+GGG | - | chr2.2:52301186-52301205 | MS.gene004575:intron | 40.0% | |
| GCTCAAGATTTCAGAAAGCA+AGG | - | chr2.2:52303409-52303428 | MS.gene004575:CDS | 40.0% | |
| TAGGGTGCAATAGAAATGGA+TGG | - | chr2.2:52301326-52301345 | MS.gene004575:CDS | 40.0% | |
| TCATCGACACTGCTAGAAAA+TGG | + | chr2.2:52302644-52302663 | None:intergenic | 40.0% | |
| TCCCTGATTATTGACAGACA+AGG | + | chr2.2:52301190-52301209 | None:intergenic | 40.0% | |
| TCTCACATTGCCTAGAGATA+TGG | - | chr2.2:52300825-52300844 | MS.gene004575:intron | 40.0% | |
| TGAACTCAATACCTTGAGGT+AGG | - | chr2.2:52301025-52301044 | MS.gene004575:intron | 40.0% | |
| TGACTTTGTAACCTACCTCA+AGG | + | chr2.2:52301039-52301058 | None:intergenic | 40.0% | |
| TGCCCTGATACTCTCTATAA+AGG | + | chr2.2:52301856-52301875 | None:intergenic | 40.0% | |
| TTCATTGTGTTGAGTGCGAA+GGG | - | chr2.2:52300791-52300810 | MS.gene004575:intron | 40.0% | |
| TTGTGTTTGTGTGTGTTGCA+TGG | - | chr2.2:52300401-52300420 | MS.gene004575:intron | 40.0% | |
| TTTCAGAAAGCAAGGAACAC+AGG | - | chr2.2:52303417-52303436 | MS.gene004575:CDS | 40.0% | |
| ! | ACTCTCTATAAAGGCGTATC+TGG | + | chr2.2:52301847-52301866 | None:intergenic | 40.0% |
| ! | AGCCTTGTCTGTCAATAATC+AGG | - | chr2.2:52301185-52301204 | MS.gene004575:intron | 40.0% |
| ! | ATATACAGCTTTGTAGCTCG+TGG | - | chr2.2:52300202-52300221 | MS.gene004575:CDS | 40.0% |
| ! | CTGCTTGCTAACAGATTCTT+TGG | + | chr2.2:52302105-52302124 | None:intergenic | 40.0% |
| ! | GGAGTGGATTTGATTCTGAT+AGG | - | chr2.2:52302580-52302599 | MS.gene004575:intron | 40.0% |
| ! | TCAAATGTCACTTCATGACC+AGG | - | chr2.2:52301071-52301090 | MS.gene004575:intron | 40.0% |
| !! | AAAACCGGCTTGTAAGGTAA+GGG | + | chr2.2:52300879-52300898 | None:intergenic | 40.0% |
| !! | ACGCCTTTATAGAGAGTATC+AGG | - | chr2.2:52301850-52301869 | MS.gene004575:intron | 40.0% |
| !! | ATTTGGATTGGCAGTGAGTT+TGG | - | chr2.2:52301480-52301499 | MS.gene004575:intron | 40.0% |
| !! | CGCCTTTATAGAGAGTATCA+GGG | - | chr2.2:52301851-52301870 | MS.gene004575:intron | 40.0% |
| !! | GTTATCTGGCTCTCTATTTG+TGG | - | chr2.2:52303514-52303533 | MS.gene004575:CDS | 40.0% |
| !! | TAAAACCGGCTTGTAAGGTA+AGG | + | chr2.2:52300880-52300899 | None:intergenic | 40.0% |
| !! | TCAACACAATGAAGTGTTGG+AGG | + | chr2.2:52300784-52300803 | None:intergenic | 40.0% |
| !!! | GATTTTAGTGGTGGGTTTTG+TGG | - | chr2.2:52300542-52300561 | MS.gene004575:intron | 40.0% |
| AACTGAGCAGAGCTTTGCTT+TGG | + | chr2.2:52303154-52303173 | None:intergenic | 45.0% | |
| CTTCATTGTGTTGAGTGCGA+AGG | - | chr2.2:52300790-52300809 | MS.gene004575:intron | 45.0% | |
| GACACGTTCAAGGAAAGCAA+TGG | + | chr2.2:52302132-52302151 | None:intergenic | 45.0% | |
| GGCACTTCAAATTGAAGGCA+TGG | + | chr2.2:52302948-52302967 | None:intergenic | 45.0% | |
| TCATTGTGTTGAGTGCGAAG+GGG | - | chr2.2:52300792-52300811 | MS.gene004575:intron | 45.0% | |
| TCTGATACCACATCTTCCGA+CGG | + | chr2.2:52303444-52303463 | None:intergenic | 45.0% | |
| TGACAGACAAGGCTACAAGA+TGG | + | chr2.2:52301179-52301198 | None:intergenic | 45.0% | |
| ! | AGTCAGCTTTGACACGTTCA+AGG | + | chr2.2:52302142-52302161 | None:intergenic | 45.0% |
| ! | CAGTGAGTTTGGTGGAATCA+CGG | - | chr2.2:52301491-52301510 | MS.gene004575:intron | 45.0% |
| ! | CTCTAAAAATGGGAGTGGAG+TGG | - | chr2.2:52302564-52302583 | MS.gene004575:intron | 45.0% |
| ! | CTTCAAATTGAAGGCATGGC+TGG | + | chr2.2:52302944-52302963 | None:intergenic | 45.0% |
| ! | GCACTGGCACTTCAAATTGA+AGG | + | chr2.2:52302953-52302972 | None:intergenic | 45.0% |
| !! | ATCTGGCTCTCTATTTGTGG+TGG | - | chr2.2:52303517-52303536 | MS.gene004575:CDS | 45.0% |
| !! | GAAGCACTGACACAGACATT+GGG | - | chr2.2:52302823-52302842 | MS.gene004575:intron | 45.0% |
| !! | TATAAAATGTTTAATAATAT+GGG | - | chr2.2:52302286-52302305 | MS.gene004575:intron | 5.0% |
| !!! | ATTTTTTTATATTAAATTTG+GGG | - | chr2.2:52300936-52300955 | MS.gene004575:intron | 5.0% |
| CAAAACTGCCAGTGTGAGGA+AGG | + | chr2.2:52302788-52302807 | None:intergenic | 50.0% | |
| CACACATGTCAGTGCCATGT+TGG | - | chr2.2:52302892-52302911 | MS.gene004575:intron | 50.0% | |
| CAGACAAAACTGCCAGTGTG+AGG | + | chr2.2:52302792-52302811 | None:intergenic | 50.0% | |
| CATTGTGTTGAGTGCGAAGG+GGG | - | chr2.2:52300793-52300812 | MS.gene004575:intron | 50.0% | |
| CTGAAGACACTGAGCTGCAA+TGG | + | chr2.2:52300275-52300294 | None:intergenic | 50.0% | |
| CTTTGTAGCTCGTGGAACGA+TGG | - | chr2.2:52300210-52300229 | MS.gene004575:CDS | 50.0% | |
| GCTACCCTTACCTTACAAGC+CGG | - | chr2.2:52300872-52300891 | MS.gene004575:intron | 50.0% | |
| GGATGGTCATTGATCAGTGG+AGG | - | chr2.2:52301343-52301362 | MS.gene004575:CDS | 50.0% | |
| GGTGTGATGGTCACAACTGT+AGG | + | chr2.2:52300326-52300345 | None:intergenic | 50.0% | |
| GTATCTGGTGAGAACGTGAG+AGG | + | chr2.2:52301832-52301851 | None:intergenic | 50.0% | |
| TGTCTGTGTCAGTGCTTCGT+AGG | + | chr2.2:52302821-52302840 | None:intergenic | 50.0% | |
| ! | AGTGTTGGAGGCTGCAATGA+AGG | + | chr2.2:52300772-52300791 | None:intergenic | 50.0% |
| ! | GCGCACAAGTAAGTTGACCA+AGG | - | chr2.2:52303324-52303343 | MS.gene004575:intron | 50.0% |
| ! | GTCAGTGCCATGTTGGTGTT+TGG | - | chr2.2:52302899-52302918 | MS.gene004575:intron | 50.0% |
| !! | ATGGCACTGACATGTGTGGT+TGG | + | chr2.2:52302890-52302909 | None:intergenic | 50.0% |
| !! | CAACATGGCACTGACATGTG+TGG | + | chr2.2:52302894-52302913 | None:intergenic | 50.0% |
| !! | CGAAGCACTGACACAGACAT+TGG | - | chr2.2:52302822-52302841 | MS.gene004575:intron | 50.0% |
| !! | GTTGGTGCCAAACACCAACA+TGG | + | chr2.2:52302909-52302928 | None:intergenic | 50.0% |
| !! | TGGATTGGCAGTGAGTTTGG+TGG | - | chr2.2:52301483-52301502 | MS.gene004575:intron | 50.0% |
| !! | TGGCACTGACATGTGTGGTT+GGG | + | chr2.2:52302889-52302908 | None:intergenic | 50.0% |
| AGACACTGAGCTGCAATGGC+AGG | + | chr2.2:52300271-52300290 | None:intergenic | 55.0% | |
| AGCAAGGAACACAGGTCCGT+CGG | - | chr2.2:52303425-52303444 | MS.gene004575:CDS | 55.0% | |
| AGCTGCCTAATTGCGGCGTT+TGG | - | chr2.2:52300742-52300761 | MS.gene004575:intron | 55.0% | |
| GCAACCCAAACGCCGCAATT+AGG | + | chr2.2:52300750-52300769 | None:intergenic | 55.0% | |
| GCTGAGTACACCGAGTTCAC+TGG | - | chr2.2:52300238-52300257 | MS.gene004575:CDS | 55.0% | |
| GCTGCCTAATTGCGGCGTTT+GGG | - | chr2.2:52300743-52300762 | MS.gene004575:intron | 55.0% | |
| TCCTTGCTCCTTCCTCACAC+TGG | - | chr2.2:52302777-52302796 | MS.gene004575:intron | 55.0% | |
| CACAGGTCCGTCGGAAGATG+TGG | - | chr2.2:52303434-52303453 | MS.gene004575:CDS | 60.0% | |
| GCCAGTGTGAGGAAGGAGCA+AGG | + | chr2.2:52302781-52302800 | None:intergenic | 60.0% | |
| GGCTGGTGTCTGACACGTGT+TGG | + | chr2.2:52302927-52302946 | None:intergenic | 60.0% | |
| TGTGTTGAGTGCGAAGGGGG+TGG | - | chr2.2:52300796-52300815 | MS.gene004575:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 52300184 | 52303558 | 52300184 | ID=MS.gene004575 |
| chr2.2 | mRNA | 52300184 | 52303558 | 52300184 | ID=MS.gene004575.t1;Parent=MS.gene004575 |
| chr2.2 | exon | 52303375 | 52303558 | 52303375 | ID=MS.gene004575.t1.exon1;Parent=MS.gene004575.t1 |
| chr2.2 | CDS | 52303375 | 52303558 | 52303375 | ID=cds.MS.gene004575.t1;Parent=MS.gene004575.t1 |
| chr2.2 | exon | 52301514 | 52301655 | 52301514 | ID=MS.gene004575.t1.exon2;Parent=MS.gene004575.t1 |
| chr2.2 | CDS | 52301514 | 52301655 | 52301514 | ID=cds.MS.gene004575.t1;Parent=MS.gene004575.t1 |
| chr2.2 | exon | 52301300 | 52301420 | 52301300 | ID=MS.gene004575.t1.exon3;Parent=MS.gene004575.t1 |
| chr2.2 | CDS | 52301300 | 52301420 | 52301300 | ID=cds.MS.gene004575.t1;Parent=MS.gene004575.t1 |
| chr2.2 | exon | 52300411 | 52300473 | 52300411 | ID=MS.gene004575.t1.exon4;Parent=MS.gene004575.t1 |
| chr2.2 | CDS | 52300411 | 52300473 | 52300411 | ID=cds.MS.gene004575.t1;Parent=MS.gene004575.t1 |
| chr2.2 | exon | 52300184 | 52300333 | 52300184 | ID=MS.gene004575.t1.exon5;Parent=MS.gene004575.t1 |
| chr2.2 | CDS | 52300184 | 52300333 | 52300184 | ID=cds.MS.gene004575.t1;Parent=MS.gene004575.t1 |
| Gene Sequence |
| Protein sequence |
