Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00469.t1 | XP_003589126.1 | 100 | 325 | 0 | 0 | 1 | 325 | 1 | 325 | 5.10E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00469.t1 | Q8GXG1 | 84.6 | 325 | 50 | 0 | 1 | 325 | 1 | 325 | 1.8e-157 | 556.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00469.t1 | Q2HTR7 | 100.0 | 325 | 0 | 0 | 1 | 325 | 1 | 325 | 3.6e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063515 | MS.gene00469 | PPI |
| MS.gene03345 | MS.gene00469 | PPI |
| MS.gene044476 | MS.gene00469 | PPI |
| MS.gene033042 | MS.gene00469 | PPI |
| MS.gene00469 | MS.gene033041 | PPI |
| MS.gene038825 | MS.gene00469 | PPI |
| MS.gene063514 | MS.gene00469 | PPI |
| MS.gene044475 | MS.gene00469 | PPI |
| MS.gene038824 | MS.gene00469 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00469.t1 | MTR_1g018760 | 100.000 | 325 | 0 | 0 | 1 | 325 | 1 | 325 | 0.0 | 662 |
| MS.gene00469.t1 | MTR_3g102370 | 85.846 | 325 | 43 | 2 | 1 | 325 | 1 | 322 | 0.0 | 570 |
| MS.gene00469.t1 | MTR_1g094030 | 83.385 | 325 | 49 | 1 | 1 | 325 | 1 | 320 | 0.0 | 552 |
| MS.gene00469.t1 | MTR_4g109900 | 59.006 | 322 | 127 | 1 | 3 | 324 | 2 | 318 | 2.83e-132 | 379 |
| MS.gene00469.t1 | MTR_4g109920 | 59.752 | 323 | 124 | 2 | 3 | 324 | 2 | 319 | 3.34e-132 | 379 |
| MS.gene00469.t1 | MTR_8g031580 | 30.449 | 312 | 165 | 11 | 6 | 281 | 23 | 318 | 5.62e-23 | 98.2 |
| MS.gene00469.t1 | MTR_8g031580 | 30.449 | 312 | 165 | 11 | 6 | 281 | 23 | 318 | 1.38e-22 | 97.4 |
| MS.gene00469.t1 | MTR_3g008180 | 28.754 | 313 | 182 | 13 | 38 | 316 | 40 | 345 | 2.07e-18 | 85.1 |
| MS.gene00469.t1 | MTR_3g008180 | 28.226 | 248 | 149 | 10 | 93 | 316 | 4 | 246 | 5.10e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene00469.t1 | AT3G16150 | 84.615 | 325 | 50 | 0 | 1 | 325 | 1 | 325 | 0.0 | 566 |
| MS.gene00469.t1 | AT5G08100 | 57.492 | 327 | 121 | 4 | 1 | 324 | 1 | 312 | 3.01e-125 | 361 |
| MS.gene00469.t1 | AT5G08100 | 57.490 | 247 | 88 | 3 | 80 | 324 | 1 | 232 | 3.77e-94 | 279 |
| MS.gene00469.t1 | AT4G00590 | 27.187 | 320 | 179 | 8 | 6 | 285 | 15 | 320 | 1.65e-20 | 91.7 |
Find 94 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACGATGCGGTGCCGTTTC+AGG | 0.158496 | 1.4:+4440293 | MS.gene00469:CDS |
| GGTTCATGGAGGTTGGAATT+TGG | 0.195033 | 1.4:+4441662 | MS.gene00469:CDS |
| ACTACGCACCCGACTGTTTC+AGG | 0.214500 | 1.4:-4441289 | None:intergenic |
| GGATCTGCCCTGACGGAAAA+AGG | 0.260928 | 1.4:+4440230 | MS.gene00469:CDS |
| GTTCATGGAGGTTGGAATTT+GGG | 0.262833 | 1.4:+4441663 | MS.gene00469:CDS |
| ACTAAACGAGCCAGTGAAAT+TGG | 0.271206 | 1.4:-4440335 | None:intergenic |
| TTAACTGCAATGGCATGTTT+AGG | 0.291387 | 1.4:+4441620 | MS.gene00469:CDS |
| TTTGTAGGGTGTGGAGGTTC+TGG | 0.300802 | 1.4:+4440676 | MS.gene00469:intron |
| AACGGATCCATTATTCAATT+CGG | 0.328084 | 1.4:+4440202 | MS.gene00469:CDS |
| AGTAAAGGAGAAGTTGCTTA+TGG | 0.336064 | 1.4:+4441595 | MS.gene00469:CDS |
| TAACTGCAATGGCATGTTTA+GGG | 0.343986 | 1.4:+4441621 | MS.gene00469:CDS |
| GTTATTGAAGGTGAGGGAAT+TGG | 0.347604 | 1.4:+4440178 | MS.gene00469:intron |
| CTTACTCGTGTTCTCAATCT+TGG | 0.354252 | 1.4:+4439799 | MS.gene00469:CDS |
| TGTGCTGCTGCCACGTCAAC+AGG | 0.356128 | 1.4:+4441331 | MS.gene00469:CDS |
| TGACGTTGAAGAGGGAGATT+AGG | 0.362167 | 1.4:-4439757 | None:intergenic |
| GTGTGCTGCAGTTTGATTAT+CGG | 0.363877 | 1.4:+4441185 | MS.gene00469:intron |
| AACACGAGTAAGAAGTTGTT+TGG | 0.379765 | 1.4:-4439788 | None:intergenic |
| AACATCGATGGCAGAAAGAT+TGG | 0.396249 | 1.4:-4439839 | None:intergenic |
| ATTGCTGTGCATGGTGGTGC+TGG | 0.397163 | 1.4:+4439727 | MS.gene00469:CDS |
| AGGGGATGTGCTTCTGAGGA+TGG | 0.401581 | 1.4:+4441640 | MS.gene00469:CDS |
| ACGGATCCATTATTCAATTC+GGG | 0.402987 | 1.4:+4440203 | MS.gene00469:CDS |
| TGCTTCTGAGGATGGGTTCA+TGG | 0.405891 | 1.4:+4441648 | MS.gene00469:CDS |
| CCACGACCCGAATTGAATAA+TGG | 0.409899 | 1.4:-4440209 | None:intergenic |
| CTCATTGCTGTTTCTAGTAA+AGG | 0.414337 | 1.4:+4441580 | MS.gene00469:CDS |
| TACTGTGGTTAAACCTGAAA+CGG | 0.417200 | 1.4:-4440306 | None:intergenic |
| TTTGATTATCGGATTCCATC+TGG | 0.417677 | 1.4:+4441196 | MS.gene00469:CDS |
| ATTGGTGACTCACCTTTGAT+AGG | 0.420480 | 1.4:+4441382 | MS.gene00469:CDS |
| AGAGAGAAACATGGGTGGTT+GGG | 0.423456 | 1.4:+4439702 | None:intergenic |
| CCATTATTCAATTCGGGTCG+TGG | 0.423817 | 1.4:+4440209 | MS.gene00469:CDS |
| GGTTGGGCAATTGCTGTGCA+TGG | 0.428468 | 1.4:+4439718 | MS.gene00469:CDS |
| CACTTTGGCGCGAGAGGTGT+CGG | 0.430026 | 1.4:+4441474 | MS.gene00469:CDS |
| GGAAATGGAGGCTAGCATAA+TGG | 0.434511 | 1.4:+4440259 | MS.gene00469:CDS |
| GACGTTGAAGAGGGAGATTA+GGG | 0.438575 | 1.4:-4439756 | None:intergenic |
| ATTAAGAATCGTTTGGATGA+AGG | 0.439748 | 1.4:+4441547 | MS.gene00469:CDS |
| AAAGGAAGCAAATACAATCT+TGG | 0.457652 | 1.4:+4440748 | MS.gene00469:CDS |
| GGGGATGTGCTTCTGAGGAT+GGG | 0.460240 | 1.4:+4441641 | MS.gene00469:CDS |
| CAGCAGCACACCTTCCTTCA+CGG | 0.468263 | 1.4:-4441318 | None:intergenic |
| TCAGGTGCGTAGACACTCAT+TGG | 0.468761 | 1.4:-4441271 | None:intergenic |
| GACTCACCTTTGATAGGAGC+CGG | 0.472240 | 1.4:+4441388 | MS.gene00469:CDS |
| ACCTACGCGTGTAACCTTGC+TGG | 0.480120 | 1.4:+4441412 | MS.gene00469:CDS |
| GAGGATGGGTTCATGGAGGT+TGG | 0.480884 | 1.4:+4441655 | MS.gene00469:CDS |
| AGCGCCGTTAAAAGCAAGAT+AGG | 0.481695 | 1.4:-4440378 | None:intergenic |
| GCTTATGGATTTAACTGCAA+TGG | 0.484263 | 1.4:+4441610 | MS.gene00469:CDS |
| TTCACTGGCTCGTTTAGTCA+TGG | 0.486469 | 1.4:+4440340 | MS.gene00469:CDS |
| AAGGTTACACGCGTAGGTCC+CGG | 0.486913 | 1.4:-4441407 | None:intergenic |
| GAAAGTCCAATGAAAATGAA+TGG | 0.491181 | 1.4:+4441244 | MS.gene00469:CDS |
| AACAGTCGGGTGCGTAGTTG+TGG | 0.493878 | 1.4:+4441294 | MS.gene00469:CDS |
| TATGATAGCCTCACCTTCAC+CGG | 0.497356 | 1.4:-4441446 | None:intergenic |
| CTTCTTCTTGACGTTGAAGA+GGG | 0.497744 | 1.4:-4439765 | None:intergenic |
| CGTTTGGATGAAGGATATGC+TGG | 0.504298 | 1.4:+4441556 | MS.gene00469:CDS |
| GTGATGGAATACAAAGGTCT+TGG | 0.504451 | 1.4:+4441499 | MS.gene00469:CDS |
| AACAAAATGATTGGTCGGAT+TGG | 0.504757 | 1.4:+4441364 | MS.gene00469:CDS |
| GAGAGAGAAACATGGGTGGT+TGG | 0.505927 | 1.4:+4439701 | None:intergenic |
| GGGCTAATGAACAAAATGAT+TGG | 0.512413 | 1.4:+4441355 | MS.gene00469:CDS |
| GCTTCTTCTTGACGTTGAAG+AGG | 0.520285 | 1.4:-4439766 | None:intergenic |
| GCGAGAGGTGTCGGCTGTGA+TGG | 0.520900 | 1.4:+4441483 | MS.gene00469:CDS |
| GGCGTCTCATGCACCGGTGA+AGG | 0.524434 | 1.4:+4441433 | MS.gene00469:CDS |
| GGCTATCATACGTGGCACTT+TGG | 0.535143 | 1.4:+4441459 | MS.gene00469:CDS |
| GCTGCTGCCACGTCAACAGG+CGG | 0.537860 | 1.4:+4441334 | MS.gene00469:CDS |
| CTTGCTGGCGTCTCATGCAC+CGG | 0.541455 | 1.4:+4441427 | MS.gene00469:CDS |
| CATTAGCCCGCCTGTTGACG+TGG | 0.549451 | 1.4:-4441341 | None:intergenic |
| CTGCTGCCACGTCAACAGGC+GGG | 0.561806 | 1.4:+4441335 | MS.gene00469:CDS |
| TAATGAACAAAATGATTGGT+CGG | 0.563124 | 1.4:+4441359 | MS.gene00469:CDS |
| GAAGGTGAGGGAATTGGAAA+CGG | 0.565330 | 1.4:+4440184 | MS.gene00469:intron |
| CAATGTTGGTATGCTTAAGC+TGG | 0.567336 | 1.4:+4440724 | MS.gene00469:CDS |
| GGGTCGTGGATCTGCCCTGA+CGG | 0.570628 | 1.4:+4440223 | MS.gene00469:CDS |
| GTTTAGGGGATGTGCTTCTG+AGG | 0.570942 | 1.4:+4441636 | MS.gene00469:CDS |
| ACGTGGCACTTTGGCGCGAG+AGG | 0.574745 | 1.4:+4441468 | MS.gene00469:CDS |
| TAGGTCCCGGCTCCTATCAA+AGG | 0.574816 | 1.4:-4441394 | None:intergenic |
| TTTATCACCGCTGACAATGT+TGG | 0.576194 | 1.4:+4440710 | MS.gene00469:CDS |
| TCTACGCACCTGAAACAGTC+GGG | 0.579137 | 1.4:+4441281 | MS.gene00469:CDS |
| CCACATGTTTCGTATCCAGA+TGG | 0.581145 | 1.4:-4441211 | None:intergenic |
| AACTGCAATGGCATGTTTAG+GGG | 0.582673 | 1.4:+4441622 | MS.gene00469:CDS |
| CATCGATGTTGTTGAACTTG+TGG | 0.587378 | 1.4:+4439852 | MS.gene00469:CDS |
| CTCATGCACCGGTGAAGGTG+AGG | 0.595337 | 1.4:+4441438 | MS.gene00469:CDS |
| TCTTGGTCTTCAAGAAGCAG+TGG | 0.595757 | 1.4:+4441516 | MS.gene00469:CDS |
| ATGGAGGCTAGCATAATGGA+TGG | 0.598729 | 1.4:+4440263 | MS.gene00469:CDS |
| ACTCACCTTTGATAGGAGCC+GGG | 0.601444 | 1.4:+4441389 | MS.gene00469:CDS |
| TGCGTAGTTGTGGACCGTGA+AGG | 0.611085 | 1.4:+4441304 | MS.gene00469:CDS |
| GTCTACGCACCTGAAACAGT+CGG | 0.614969 | 1.4:+4441280 | MS.gene00469:CDS |
| CACAAGTTCAACAACATCGA+TGG | 0.615685 | 1.4:-4439851 | None:intergenic |
| TTGAGAGAGAGAAACATGGG+TGG | 0.619739 | 1.4:+4439697 | None:intergenic |
| AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 1.4:+4440247 | MS.gene00469:CDS |
| TGGTATGCTTAAGCTGGCAA+AGG | 0.632666 | 1.4:+4440730 | MS.gene00469:CDS |
| TTAAAAGCAAGATAGGAATG+AGG | 0.636686 | 1.4:-4440371 | None:intergenic |
| CGGTGCATGAGACGCCAGCA+AGG | 0.648195 | 1.4:-4441426 | None:intergenic |
| TGGGCAATTGCTGTGCATGG+TGG | 0.661106 | 1.4:+4439721 | MS.gene00469:CDS |
| TAGTTGTGGACCGTGAAGGA+AGG | 0.661356 | 1.4:+4441308 | MS.gene00469:CDS |
| CCATCTGGATACGAAACATG+TGG | 0.678131 | 1.4:+4441211 | MS.gene00469:CDS |
| GCCAGCAAGGTTACACGCGT+AGG | 0.682958 | 1.4:-4441413 | None:intergenic |
| GAAGGTGAGGCTATCATACG+TGG | 0.685255 | 1.4:+4441451 | MS.gene00469:CDS |
| AAGCATACCAACATTGTCAG+CGG | 0.698333 | 1.4:-4440717 | None:intergenic |
| TTCTGAGGATGGGTTCATGG+AGG | 0.702330 | 1.4:+4441651 | MS.gene00469:CDS |
| TCGGCTGTGATGGAATACAA+AGG | 0.710713 | 1.4:+4441493 | MS.gene00469:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATTAATTAATTAT+TGG | + | chr1.4:4441065-4441084 | MS.gene00469:intron | 0.0% |
| !!! | ATCTTTATTTACAAAAAAAT+AGG | + | chr1.4:4440522-4440541 | MS.gene00469:intron | 10.0% |
| !!! | GAAAAGATATTTTATTTTTT+GGG | + | chr1.4:4440544-4440563 | MS.gene00469:intron | 10.0% |
| !!! | TTATTTATTTTTGTTATTGA+AGG | + | chr1.4:4440166-4440185 | MS.gene00469:intron | 10.0% |
| !! | ATAAATTAATAATTCGTACA+CGG | - | chr1.4:4440620-4440639 | None:intergenic | 15.0% |
| !! | TGAATTATTATTACATTGTA+CGG | + | chr1.4:4440804-4440823 | MS.gene00469:intron | 15.0% |
| !!! | AATATATTTTAACTATTCCA+AGG | + | chr1.4:4440117-4440136 | MS.gene00469:intron | 15.0% |
| !!! | ATTATTTTACTTGTTTTTGT+AGG | + | chr1.4:4440661-4440680 | MS.gene00469:intron | 15.0% |
| !!! | ATTCTTTCATTCATTTTTTA+CGG | + | chr1.4:4441098-4441117 | MS.gene00469:intron | 15.0% |
| !!! | GGAAAAGATATTTTATTTTT+TGG | + | chr1.4:4440543-4440562 | MS.gene00469:intron | 15.0% |
| !!! | GTAAAAATTATTTTCAGATT+GGG | + | chr1.4:4440893-4440912 | MS.gene00469:intron | 15.0% |
| !!! | TTATTTTACTTGTTTTTGTA+GGG | + | chr1.4:4440662-4440681 | MS.gene00469:intron | 15.0% |
| !! | AAAAAAAAATTGCAGAGATT+TGG | - | chr1.4:4440488-4440507 | None:intergenic | 20.0% |
| !! | ATTATTATCAAATTCAACCA+TGG | + | chr1.4:4440777-4440796 | MS.gene00469:intron | 20.0% |
| !! | GAATTATTATTACATTGTAC+GGG | + | chr1.4:4440805-4440824 | MS.gene00469:intron | 20.0% |
| !! | TAATAATAATTCAAGATCCA+TGG | - | chr1.4:4440797-4440816 | None:intergenic | 20.0% |
| !! | TGTTTATAAACAAAAGAGTT+TGG | - | chr1.4:4441009-4441028 | None:intergenic | 20.0% |
| !!! | AGATATTTTATTTTTTGGGT+TGG | + | chr1.4:4440548-4440567 | MS.gene00469:intron | 20.0% |
| !!! | GGTAAAAATTATTTTCAGAT+TGG | + | chr1.4:4440892-4440911 | MS.gene00469:intron | 20.0% |
| !!! | TAGTTTTATTATGATTGTCA+CGG | - | chr1.4:4440023-4440042 | None:intergenic | 20.0% |
| ! | AGTAAAAAATCCAATTTCAC+TGG | + | chr1.4:4440325-4440344 | MS.gene00469:CDS | 25.0% |
| ! | TAATGAACAAAATGATTGGT+CGG | + | chr1.4:4441359-4441378 | MS.gene00469:CDS | 25.0% |
| ! | TATTGTATTCATGCATAGTT+TGG | + | chr1.4:4440938-4440957 | MS.gene00469:intron | 25.0% |
| ! | TCACATATTGAAATAAACGT+GGG | + | chr1.4:4440871-4440890 | MS.gene00469:intron | 25.0% |
| ! | TTCACATATTGAAATAAACG+TGG | + | chr1.4:4440870-4440889 | MS.gene00469:intron | 25.0% |
| ! | TTCTTGTTAATCATGTAGTT+TGG | - | chr1.4:4440099-4440118 | None:intergenic | 25.0% |
| ! | TTTAACTATTCCAAGGAATT+TGG | + | chr1.4:4440124-4440143 | MS.gene00469:intron | 25.0% |
| !! | TAAAGAGAAAGTGTACTAAT+TGG | - | chr1.4:4440965-4440984 | None:intergenic | 25.0% |
| !! | TTTTGTCATTAAGAATCGTT+TGG | + | chr1.4:4441540-4441559 | MS.gene00469:CDS | 25.0% |
| !!! | ATTTTTGTTATTGAAGGTGA+GGG | + | chr1.4:4440172-4440191 | MS.gene00469:intron | 25.0% |
| !!! | TATTTTTGTTATTGAAGGTG+AGG | + | chr1.4:4440171-4440190 | MS.gene00469:intron | 25.0% |
| !!! | TGAAATTGGATTTTTTACTG+TGG | - | chr1.4:4440324-4440343 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTAACGTTGTTTA+AGG | - | chr1.4:4440463-4440482 | None:intergenic | 25.0% |
| AAAGGAAGCAAATACAATCT+TGG | + | chr1.4:4440748-4440767 | MS.gene00469:CDS | 30.0% | |
| AACAAACACTTTGTCTTCAT+TGG | - | chr1.4:4441044-4441063 | None:intergenic | 30.0% | |
| AACGGATCCATTATTCAATT+CGG | + | chr1.4:4440202-4440221 | MS.gene00469:CDS | 30.0% | |
| ATTAAGAATCGTTTGGATGA+AGG | + | chr1.4:4441547-4441566 | MS.gene00469:CDS | 30.0% | |
| CCATGAAGTAATAATGGTAA+CGG | - | chr1.4:4439984-4440003 | None:intergenic | 30.0% | |
| GAAAGTCCAATGAAAATGAA+TGG | + | chr1.4:4441244-4441263 | MS.gene00469:CDS | 30.0% | |
| GTGGAAAAGGAACAAAAAAA+GGG | - | chr1.4:4439962-4439981 | None:intergenic | 30.0% | |
| TTAAAAGCAAGATAGGAATG+AGG | - | chr1.4:4440374-4440393 | None:intergenic | 30.0% | |
| ! | ATTACATTGTACGGGTTAAA+AGG | + | chr1.4:4440813-4440832 | MS.gene00469:intron | 30.0% |
| ! | ATTGTCACGGTTATTTGTTA+TGG | - | chr1.4:4440010-4440029 | None:intergenic | 30.0% |
| ! | TTACATTGTACGGGTTAAAA+GGG | + | chr1.4:4440814-4440833 | MS.gene00469:intron | 30.0% |
| !! | AGTGTGTGTTTTTCTGAAAA+GGG | + | chr1.4:4440843-4440862 | MS.gene00469:intron | 30.0% |
| !! | CATTCCTATCTTGCTTTTAA+CGG | + | chr1.4:4440374-4440393 | MS.gene00469:CDS | 30.0% |
| !!! | TTGCAGAGATTTGGTTTTTT+TGG | - | chr1.4:4440479-4440498 | None:intergenic | 30.0% |
| !!! | TTTATTTTTTGGGTTGGTGT+TGG | + | chr1.4:4440554-4440573 | MS.gene00469:intron | 30.0% |
| AAAAAAGGGACATGACAAGA+TGG | - | chr1.4:4439948-4439967 | None:intergenic | 35.0% | |
| AACACGAGTAAGAAGTTGTT+TGG | - | chr1.4:4439791-4439810 | None:intergenic | 35.0% | |
| AACTATTCCAAGGAATTTGG+AGG | + | chr1.4:4440127-4440146 | MS.gene00469:intron | 35.0% | |
| AAGATGGAAACATGTGTATG+TGG | - | chr1.4:4439932-4439951 | None:intergenic | 35.0% | |
| ACGGATCCATTATTCAATTC+GGG | + | chr1.4:4440203-4440222 | MS.gene00469:CDS | 35.0% | |
| ACTATTCCAAGGAATTTGGA+GGG | + | chr1.4:4440128-4440147 | MS.gene00469:intron | 35.0% | |
| AGATGGAAACATGTGTATGT+GGG | - | chr1.4:4439931-4439950 | None:intergenic | 35.0% | |
| AGTAAAGGAGAAGTTGCTTA+TGG | + | chr1.4:4441595-4441614 | MS.gene00469:CDS | 35.0% | |
| CCGTTACCATTATTACTTCA+TGG | + | chr1.4:4439981-4440000 | MS.gene00469:intron | 35.0% | |
| GCTTATGGATTTAACTGCAA+TGG | + | chr1.4:4441610-4441629 | MS.gene00469:CDS | 35.0% | |
| GGGCTAATGAACAAAATGAT+TGG | + | chr1.4:4441355-4441374 | MS.gene00469:CDS | 35.0% | |
| GGTGGAAAAGGAACAAAAAA+AGG | - | chr1.4:4439963-4439982 | None:intergenic | 35.0% | |
| TAACTGCAATGGCATGTTTA+GGG | + | chr1.4:4441621-4441640 | MS.gene00469:CDS | 35.0% | |
| TACTGTGGTTAAACCTGAAA+CGG | - | chr1.4:4440309-4440328 | None:intergenic | 35.0% | |
| TGGTAGCCATGAAGTAATAA+TGG | - | chr1.4:4439990-4440009 | None:intergenic | 35.0% | |
| TTAACTGCAATGGCATGTTT+AGG | + | chr1.4:4441620-4441639 | MS.gene00469:CDS | 35.0% | |
| TTTCAGAAAAACACACACTC+TGG | - | chr1.4:4440842-4440861 | None:intergenic | 35.0% | |
| TTTGATTATCGGATTCCATC+TGG | + | chr1.4:4441196-4441215 | MS.gene00469:CDS | 35.0% | |
| ! | AACAAAATGATTGGTCGGAT+TGG | + | chr1.4:4441364-4441383 | MS.gene00469:CDS | 35.0% |
| ! | AGGAAGTGTGGACAATATTA+TGG | - | chr1.4:4439904-4439923 | None:intergenic | 35.0% |
| ! | GGAAGTCCATTCATTTTCAT+TGG | - | chr1.4:4441253-4441272 | None:intergenic | 35.0% |
| ! | TACATTGTACGGGTTAAAAG+GGG | + | chr1.4:4440815-4440834 | MS.gene00469:intron | 35.0% |
| ! | TGAAGATTTTGCTAGACAAC+AGG | + | chr1.4:4440400-4440419 | MS.gene00469:CDS | 35.0% |
| !! | AATAATGGTAACGGTGGAAA+AGG | - | chr1.4:4439975-4439994 | None:intergenic | 35.0% |
| !! | CTCATTGCTGTTTCTAGTAA+AGG | + | chr1.4:4441580-4441599 | MS.gene00469:CDS | 35.0% |
| !! | GAGTGTGTGTTTTTCTGAAA+AGG | + | chr1.4:4440842-4440861 | MS.gene00469:intron | 35.0% |
| !! | TGAAGTAATAATGGTAACGG+TGG | - | chr1.4:4439981-4440000 | None:intergenic | 35.0% |
| !!! | TTACTTGTTTTTGTAGGGTG+TGG | + | chr1.4:4440667-4440686 | MS.gene00469:intron | 35.0% |
| AACATCGATGGCAGAAAGAT+TGG | - | chr1.4:4439842-4439861 | None:intergenic | 40.0% | |
| AACTGCAATGGCATGTTTAG+GGG | + | chr1.4:4441622-4441641 | MS.gene00469:CDS | 40.0% | |
| AAGCATACCAACATTGTCAG+CGG | - | chr1.4:4440720-4440739 | None:intergenic | 40.0% | |
| ACTAAACGAGCCAGTGAAAT+TGG | - | chr1.4:4440338-4440357 | None:intergenic | 40.0% | |
| ATAATCCCCTCCAAATTCCT+TGG | - | chr1.4:4440137-4440156 | None:intergenic | 40.0% | |
| CAATGTTGGTATGCTTAAGC+TGG | + | chr1.4:4440724-4440743 | MS.gene00469:CDS | 40.0% | |
| CACAAGTTCAACAACATCGA+TGG | - | chr1.4:4439854-4439873 | None:intergenic | 40.0% | |
| CATCGATGTTGTTGAACTTG+TGG | + | chr1.4:4439852-4439871 | MS.gene00469:CDS | 40.0% | |
| CTATTCCAAGGAATTTGGAG+GGG | + | chr1.4:4440129-4440148 | MS.gene00469:intron | 40.0% | |
| CTTACTCGTGTTCTCAATCT+TGG | + | chr1.4:4439799-4439818 | MS.gene00469:CDS | 40.0% | |
| CTTCTTCTTGACGTTGAAGA+GGG | - | chr1.4:4439768-4439787 | None:intergenic | 40.0% | |
| GTGTGCTGCAGTTTGATTAT+CGG | + | chr1.4:4441185-4441204 | MS.gene00469:intron | 40.0% | |
| GTTATTGAAGGTGAGGGAAT+TGG | + | chr1.4:4440178-4440197 | MS.gene00469:intron | 40.0% | |
| GTTCATGGAGGTTGGAATTT+GGG | + | chr1.4:4441663-4441682 | MS.gene00469:CDS | 40.0% | |
| TTTAAGGAAGACACACACGT+GGG | - | chr1.4:4440447-4440466 | None:intergenic | 40.0% | |
| TTTATCACCGCTGACAATGT+TGG | + | chr1.4:4440710-4440729 | MS.gene00469:CDS | 40.0% | |
| ! | ATTGGTGACTCACCTTTGAT+AGG | + | chr1.4:4441382-4441401 | MS.gene00469:CDS | 40.0% |
| ! | GTGATGGAATACAAAGGTCT+TGG | + | chr1.4:4441499-4441518 | MS.gene00469:CDS | 40.0% |
| !! | TTGGTGTTGGAACTTTGCTA+AGG | + | chr1.4:4440567-4440586 | MS.gene00469:intron | 40.0% |
| AAAAGGAACGGTGGAAATGG+AGG | + | chr1.4:4440247-4440266 | MS.gene00469:CDS | 45.0% | |
| AACATGTGTATGTGGGTACG+AGG | - | chr1.4:4439924-4439943 | None:intergenic | 45.0% | |
| AGCGCCGTTAAAAGCAAGAT+AGG | - | chr1.4:4440381-4440400 | None:intergenic | 45.0% | |
| CAAACGAATCGTAGCGTCAA+TGG | + | chr1.4:4440046-4440065 | MS.gene00469:intron | 45.0% | |
| CCACATGTTTCGTATCCAGA+TGG | - | chr1.4:4441214-4441233 | None:intergenic | 45.0% | |
| CCACGACCCGAATTGAATAA+TGG | - | chr1.4:4440212-4440231 | None:intergenic | 45.0% | |
| CCATCTGGATACGAAACATG+TGG | + | chr1.4:4441211-4441230 | MS.gene00469:CDS | 45.0% | |
| CCATTATTCAATTCGGGTCG+TGG | + | chr1.4:4440209-4440228 | MS.gene00469:CDS | 45.0% | |
| CGTTTGGATGAAGGATATGC+TGG | + | chr1.4:4441556-4441575 | MS.gene00469:CDS | 45.0% | |
| GAAGGTGAGGGAATTGGAAA+CGG | + | chr1.4:4440184-4440203 | MS.gene00469:intron | 45.0% | |
| GACGTTGAAGAGGGAGATTA+GGG | - | chr1.4:4439759-4439778 | None:intergenic | 45.0% | |
| GATGGACCAAAAAGACGATG+CGG | + | chr1.4:4440281-4440300 | MS.gene00469:CDS | 45.0% | |
| GCTTCTTCTTGACGTTGAAG+AGG | - | chr1.4:4439769-4439788 | None:intergenic | 45.0% | |
| GGAAAAAGGAACGGTGGAAA+TGG | + | chr1.4:4440244-4440263 | MS.gene00469:CDS | 45.0% | |
| GGAAATGGAGGCTAGCATAA+TGG | + | chr1.4:4440259-4440278 | MS.gene00469:CDS | 45.0% | |
| GGTTCATGGAGGTTGGAATT+TGG | + | chr1.4:4441662-4441681 | MS.gene00469:CDS | 45.0% | |
| GTTTAAGGAAGACACACACG+TGG | - | chr1.4:4440448-4440467 | None:intergenic | 45.0% | |
| TATGATAGCCTCACCTTCAC+CGG | - | chr1.4:4441449-4441468 | None:intergenic | 45.0% | |
| TGACGTTGAAGAGGGAGATT+AGG | - | chr1.4:4439760-4439779 | None:intergenic | 45.0% | |
| TGGTATGCTTAAGCTGGCAA+AGG | + | chr1.4:4440730-4440749 | MS.gene00469:CDS | 45.0% | |
| ! | ATGGAGGCTAGCATAATGGA+TGG | + | chr1.4:4440263-4440282 | MS.gene00469:CDS | 45.0% |
| ! | TCGGCTGTGATGGAATACAA+AGG | + | chr1.4:4441493-4441512 | MS.gene00469:CDS | 45.0% |
| ! | TCTTGGTCTTCAAGAAGCAG+TGG | + | chr1.4:4441516-4441535 | MS.gene00469:CDS | 45.0% |
| !! | TTCACTGGCTCGTTTAGTCA+TGG | + | chr1.4:4440340-4440359 | MS.gene00469:CDS | 45.0% |
| !!! | CTTGTTTTTGTAGGGTGTGG+AGG | + | chr1.4:4440670-4440689 | MS.gene00469:intron | 45.0% |
| ACTCACCTTTGATAGGAGCC+GGG | + | chr1.4:4441389-4441408 | MS.gene00469:CDS | 50.0% | |
| GAAGACACACACGTGGGAAT+AGG | - | chr1.4:4440441-4440460 | None:intergenic | 50.0% | |
| GAAGGTGAGGCTATCATACG+TGG | + | chr1.4:4441451-4441470 | MS.gene00469:CDS | 50.0% | |
| GACTCACCTTTGATAGGAGC+CGG | + | chr1.4:4441388-4441407 | MS.gene00469:CDS | 50.0% | |
| GGCTATCATACGTGGCACTT+TGG | + | chr1.4:4441459-4441478 | MS.gene00469:CDS | 50.0% | |
| GTCTACGCACCTGAAACAGT+CGG | + | chr1.4:4441280-4441299 | MS.gene00469:CDS | 50.0% | |
| GTTTAGGGGATGTGCTTCTG+AGG | + | chr1.4:4441636-4441655 | MS.gene00469:CDS | 50.0% | |
| TAGTTGTGGACCGTGAAGGA+AGG | + | chr1.4:4441308-4441327 | MS.gene00469:CDS | 50.0% | |
| TATGTGGGTACGAGGAAGTG+TGG | - | chr1.4:4439916-4439935 | None:intergenic | 50.0% | |
| TCAGGTGCGTAGACACTCAT+TGG | - | chr1.4:4441274-4441293 | None:intergenic | 50.0% | |
| TCTACGCACCTGAAACAGTC+GGG | + | chr1.4:4441281-4441300 | MS.gene00469:CDS | 50.0% | |
| TGCCCTGACGGAAAAAGGAA+CGG | + | chr1.4:4440235-4440254 | MS.gene00469:CDS | 50.0% | |
| TTTGTAGGGTGTGGAGGTTC+TGG | + | chr1.4:4440676-4440695 | MS.gene00469:intron | 50.0% | |
| ! | CACCGTTCCTTTTTCCGTCA+GGG | - | chr1.4:4440240-4440259 | None:intergenic | 50.0% |
| ! | TGCTTCTGAGGATGGGTTCA+TGG | + | chr1.4:4441648-4441667 | MS.gene00469:CDS | 50.0% |
| ! | TTCTGAGGATGGGTTCATGG+AGG | + | chr1.4:4441651-4441670 | MS.gene00469:CDS | 50.0% |
| AACAGTCGGGTGCGTAGTTG+TGG | + | chr1.4:4441294-4441313 | MS.gene00469:CDS | 55.0% | |
| AAGGTTACACGCGTAGGTCC+CGG | - | chr1.4:4441410-4441429 | None:intergenic | 55.0% | |
| ACCTACGCGTGTAACCTTGC+TGG | + | chr1.4:4441412-4441431 | MS.gene00469:CDS | 55.0% | |
| ACTACGCACCCGACTGTTTC+AGG | - | chr1.4:4441292-4441311 | None:intergenic | 55.0% | |
| CAGCAGCACACCTTCCTTCA+CGG | - | chr1.4:4441321-4441340 | None:intergenic | 55.0% | |
| CCTGACGGAAAAAGGAACGG+TGG | + | chr1.4:4440238-4440257 | MS.gene00469:CDS | 55.0% | |
| GGATCTGCCCTGACGGAAAA+AGG | + | chr1.4:4440230-4440249 | MS.gene00469:CDS | 55.0% | |
| GGTTGGGCAATTGCTGTGCA+TGG | + | chr1.4:4439718-4439737 | MS.gene00469:CDS | 55.0% | |
| TAGGTCCCGGCTCCTATCAA+AGG | - | chr1.4:4441397-4441416 | None:intergenic | 55.0% | |
| TGCGTAGTTGTGGACCGTGA+AGG | + | chr1.4:4441304-4441323 | MS.gene00469:CDS | 55.0% | |
| TGGGCAATTGCTGTGCATGG+TGG | + | chr1.4:4439721-4439740 | MS.gene00469:CDS | 55.0% | |
| ! | ACGGCACCGCATCGTCTTTT+TGG | - | chr1.4:4440290-4440309 | None:intergenic | 55.0% |
| ! | AGGGGATGTGCTTCTGAGGA+TGG | + | chr1.4:4441640-4441659 | MS.gene00469:CDS | 55.0% |
| ! | ATTGCTGTGCATGGTGGTGC+TGG | + | chr1.4:4439727-4439746 | MS.gene00469:CDS | 55.0% |
| ! | CCACCGTTCCTTTTTCCGTC+AGG | - | chr1.4:4440241-4440260 | None:intergenic | 55.0% |
| ! | GAGGATGGGTTCATGGAGGT+TGG | + | chr1.4:4441655-4441674 | MS.gene00469:CDS | 55.0% |
| ! | GGGGATGTGCTTCTGAGGAT+GGG | + | chr1.4:4441641-4441660 | MS.gene00469:CDS | 55.0% |
| CATTAGCCCGCCTGTTGACG+TGG | - | chr1.4:4441344-4441363 | None:intergenic | 60.0% | |
| CTTGCTGGCGTCTCATGCAC+CGG | + | chr1.4:4441427-4441446 | MS.gene00469:CDS | 60.0% | |
| GCCAGCAAGGTTACACGCGT+AGG | - | chr1.4:4441416-4441435 | None:intergenic | 60.0% | |
| ! | CACTTTGGCGCGAGAGGTGT+CGG | + | chr1.4:4441474-4441493 | MS.gene00469:CDS | 60.0% |
| ! | CTCATGCACCGGTGAAGGTG+AGG | + | chr1.4:4441438-4441457 | MS.gene00469:CDS | 60.0% |
| ! | TGTGCTGCTGCCACGTCAAC+AGG | + | chr1.4:4441331-4441350 | MS.gene00469:CDS | 60.0% |
| !! | AGACGATGCGGTGCCGTTTC+AGG | + | chr1.4:4440293-4440312 | MS.gene00469:CDS | 60.0% |
| ACGTGGCACTTTGGCGCGAG+AGG | + | chr1.4:4441468-4441487 | MS.gene00469:CDS | 65.0% | |
| CGGTGCATGAGACGCCAGCA+AGG | - | chr1.4:4441429-4441448 | None:intergenic | 65.0% | |
| CTGCTGCCACGTCAACAGGC+GGG | + | chr1.4:4441335-4441354 | MS.gene00469:CDS | 65.0% | |
| GCTGCTGCCACGTCAACAGG+CGG | + | chr1.4:4441334-4441353 | MS.gene00469:CDS | 65.0% | |
| GGGTCGTGGATCTGCCCTGA+CGG | + | chr1.4:4440223-4440242 | MS.gene00469:CDS | 65.0% | |
| ! | GGCGTCTCATGCACCGGTGA+AGG | + | chr1.4:4441433-4441452 | MS.gene00469:CDS | 65.0% |
| !! | GCGAGAGGTGTCGGCTGTGA+TGG | + | chr1.4:4441483-4441502 | MS.gene00469:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4439712 | 4441690 | 4439712 | ID=MS.gene00469 |
| chr1.4 | mRNA | 4439712 | 4441690 | 4439712 | ID=MS.gene00469.t1;Parent=MS.gene00469 |
| chr1.4 | exon | 4439712 | 4439873 | 4439712 | ID=MS.gene00469.t1.exon1;Parent=MS.gene00469.t1 |
| chr1.4 | CDS | 4439712 | 4439873 | 4439712 | ID=cds.MS.gene00469.t1;Parent=MS.gene00469.t1 |
| chr1.4 | exon | 4440188 | 4440421 | 4440188 | ID=MS.gene00469.t1.exon2;Parent=MS.gene00469.t1 |
| chr1.4 | CDS | 4440188 | 4440421 | 4440188 | ID=cds.MS.gene00469.t1;Parent=MS.gene00469.t1 |
| chr1.4 | exon | 4440683 | 4440769 | 4440683 | ID=MS.gene00469.t1.exon3;Parent=MS.gene00469.t1 |
| chr1.4 | CDS | 4440683 | 4440769 | 4440683 | ID=cds.MS.gene00469.t1;Parent=MS.gene00469.t1 |
| chr1.4 | exon | 4441196 | 4441690 | 4441196 | ID=MS.gene00469.t1.exon4;Parent=MS.gene00469.t1 |
| chr1.4 | CDS | 4441196 | 4441690 | 4441196 | ID=cds.MS.gene00469.t1;Parent=MS.gene00469.t1 |
| Gene Sequence |
| Protein sequence |
