AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03345

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03345.t1 MTR_4g109900 94.006 317 19 0 1 317 1 317 0.0 610
MS.gene03345.t1 MTR_4g109920 89.937 318 31 1 1 317 1 318 0.0 576
MS.gene03345.t1 MTR_3g102370 56.875 320 130 2 3 317 4 320 7.42e-123 355
MS.gene03345.t1 MTR_1g018760 55.937 320 136 1 3 317 4 323 1.04e-122 355
MS.gene03345.t1 MTR_1g094030 56.522 322 130 2 1 317 2 318 1.05e-121 352
MS.gene03345.t1 MTR_8g031580 29.603 277 164 7 5 253 23 296 2.44e-24 101
MS.gene03345.t1 MTR_8g031580 29.603 277 164 7 5 253 23 296 5.40e-24 101
MS.gene03345.t1 MTR_3g008180 29.804 255 148 10 66 294 77 326 4.22e-15 75.5
MS.gene03345.t1 MTR_3g008180 28.879 232 134 10 89 294 1 227 4.05e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03345.t1 AT5G08100 71.384 318 82 2 1 317 2 311 1.01e-160 451
MS.gene03345.t1 AT3G16150 55.312 320 138 1 3 317 4 323 1.65e-123 357
MS.gene03345.t1 AT5G08100 73.222 239 56 1 79 317 1 231 2.09e-121 348
MS.gene03345.t1 AT4G00590 25.148 338 209 7 5 300 15 350 2.62e-20 90.9
MS.gene03345.t1 AT4G00590 25.305 328 206 8 5 300 15 335 7.21e-17 80.9
MS.gene03345.t1 AT5G61540 28.390 236 137 9 66 274 80 310 6.82e-15 74.7
MS.gene03345.t1 AT5G61540 27.660 235 136 10 89 294 1 230 1.35e-11 64.3
MS.gene03345.t1 AT5G61540 27.660 235 136 10 89 294 1 230 1.35e-11 64.3

Find 81 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATACTCCTCGTATTTATT+TGG 0.169173 6.2:+31804704 MS.gene03345:CDS
CATTTCAACGGTGCCTTTAT+TGG 0.215143 6.2:-31804583 None:intergenic
TGTTGTTAATGTTGTTTCTT+TGG 0.217583 6.2:+31804665 MS.gene03345:CDS
ATGAAATGTGGTGCTGTTTC+AGG 0.218389 6.2:+31804633 MS.gene03345:CDS
CAGTCTTGGTAGTATCATTT+TGG 0.221895 6.2:-31805727 None:intergenic
AACAAAATGGTTGGTCAAAT+TGG 0.251184 6.2:+31805860 MS.gene03345:CDS
TTCTTTGGCTCGTTTGGTTA+TGG 0.253780 6.2:+31804680 MS.gene03345:CDS
TGAAATGGAAGCTTCTATTA+TGG 0.283828 6.2:+31804599 MS.gene03345:CDS
AACATTCCTGGTGTATTATA+AGG 0.283990 6.2:-31806112 None:intergenic
ATCAGGCAAAAGAAGCAAAT+AGG 0.299059 6.2:+31805567 MS.gene03345:CDS
TGTTGTTTCTTTGGCTCGTT+TGG 0.326985 6.2:+31804674 MS.gene03345:CDS
TAAGAGCTTTGACACTGATT+TGG 0.341142 6.2:-31804339 None:intergenic
TCGTGTGGCTGACGGGCTTC+CGG 0.348598 6.2:-31804295 None:intergenic
GATAGTCATCTTGGAACTAT+TGG 0.364863 6.2:+31805776 MS.gene03345:CDS
AAACATTGAAAGACTAAATC+AGG 0.366601 6.2:+31805550 MS.gene03345:CDS
TTATGTGCAGTTTCTGCAAC+AGG 0.369596 6.2:+31805923 MS.gene03345:CDS
CAATAAAGGCACCGTTGAAA+TGG 0.372820 6.2:+31804584 MS.gene03345:CDS
GGTTCTGTTCTCACCAATAA+AGG 0.374095 6.2:+31804570 MS.gene03345:CDS
GCTAATGGTGATAGTCATCT+TGG 0.387149 6.2:+31805767 MS.gene03345:CDS
TTGGTTGCTGTGTCTGCTGC+TGG 0.392496 6.2:+31806076 MS.gene03345:CDS
ATTCAAAGGTCTTTCTCTAA+AGG 0.406833 6.2:+31806003 MS.gene03345:CDS
AGAGCTTGTGCTACTGAAGA+TGG 0.415599 6.2:+31806136 MS.gene03345:CDS
TCAGGCAAAAGAAGCAAATA+GGG 0.422197 6.2:+31805568 MS.gene03345:CDS
GAGCTTCTTCGTGTGGCTGA+CGG 0.426247 6.2:-31804303 None:intergenic
AGCTTCTTCGTGTGGCTGAC+GGG 0.426974 6.2:-31804302 None:intergenic
ATTGGCGACACGCCAGTCAT+AGG 0.443087 6.2:+31805878 MS.gene03345:CDS
CTAGCTTCAGCAACATCAAC+TGG 0.443431 6.2:+31805827 MS.gene03345:CDS
ACCAAAGGGCACTGTTGGCT+TGG 0.446248 6.2:+31806057 MS.gene03345:CDS
GCACAAGCTCTAAACATTCC+TGG 0.447190 6.2:-31806124 None:intergenic
TGGTGTTTCTGTTTCAGTCT+TGG 0.453611 6.2:-31805741 None:intergenic
GAGTCAGAAATCAGATGGCC+TGG 0.468166 6.2:+31804227 None:intergenic
ACAGAAACACCATTTGCTAA+TGG 0.478619 6.2:+31805752 MS.gene03345:CDS
GAGCTTTGACACTGATTTGG+AGG 0.485985 6.2:-31804336 None:intergenic
TGCATACCAAAGGGCACTGT+TGG 0.486360 6.2:+31806052 MS.gene03345:CDS
ACCAAGCCAACAGTGCCCTT+TGG 0.488794 6.2:-31806058 None:intergenic
CCACACTTCAATGCTGGTAG+AGG 0.496753 6.2:+31804549 MS.gene03345:CDS
TGGTGGATTAGTGAACAAAA+TGG 0.500466 6.2:+31805847 MS.gene03345:CDS
GCTTCCGGTGGAAGTGAACA+TGG 0.502741 6.2:-31804280 None:intergenic
GTAGCACTACATGGCGGCGC+CGG 0.508991 6.2:+31804253 MS.gene03345:CDS
GCCATGTAGTGCTACTGCCC+AGG 0.511791 6.2:-31804245 None:intergenic
GCAGTTTCTGCAACAGGGAT+AGG 0.517760 6.2:+31805929 MS.gene03345:CDS
AAGAGATGTGGCTGCAATGA+TGG 0.524648 6.2:+31805979 MS.gene03345:CDS
TGACTATCACCATTAGCAAA+TGG 0.532229 6.2:-31805761 None:intergenic
GCCTGGGCAGTAGCACTACA+TGG 0.540514 6.2:+31804244 MS.gene03345:CDS
TTGTTCATAGGTTCGTGAGT+TGG 0.541945 6.2:+31804518 MS.gene03345:intron
ATGGAAGCTTCTATTATGGA+TGG 0.542192 6.2:+31804603 MS.gene03345:CDS
CAAGTTCAACGACGTCTAGA+GGG 0.545254 6.2:-31804375 None:intergenic
AGTCAGAAATCAGATGGCCT+GGG 0.546169 6.2:+31804228 None:intergenic
TGTGGCTGACGGGCTTCCGG+TGG 0.548828 6.2:-31804292 None:intergenic
AATATTCCACACTTCAATGC+TGG 0.552223 6.2:+31804543 MS.gene03345:CDS
GAGCTTGTGCTACTGAAGAT+GGG 0.553483 6.2:+31806137 MS.gene03345:CDS
CGTCCCATGTTCACTTCCAC+CGG 0.558019 6.2:+31804276 MS.gene03345:CDS
AAAAGAAGCAAATAGGGTCC+AGG 0.568354 6.2:+31805574 MS.gene03345:CDS
AATAGAAGCTTCCATTTCAA+CGG 0.569625 6.2:-31804595 None:intergenic
AGAAACTGCACATAATTCGT+TGG 0.573046 6.2:-31805915 None:intergenic
GACGTCTAGAGGGGCCATGT+TGG 0.581967 6.2:-31804365 None:intergenic
GTACGTGAGTGCATACCAAA+GGG 0.583138 6.2:+31806043 MS.gene03345:CDS
ACAAGTTCAACGACGTCTAG+AGG 0.588579 6.2:-31804376 None:intergenic
TATGTTCCAACACCTATGAC+TGG 0.590041 6.2:-31805890 None:intergenic
TGTACGTGAGTGCATACCAA+AGG 0.622942 6.2:+31806042 MS.gene03345:CDS
GGATTAGTGAACAAAATGGT+TGG 0.625378 6.2:+31805851 MS.gene03345:CDS
GCTTCAGCAACATCAACTGG+TGG 0.625484 6.2:+31805830 MS.gene03345:CDS
GACACGCCAGTCATAGGTGT+TGG 0.627593 6.2:+31805884 MS.gene03345:CDS
TGTGTAGCTGTTGATAGCTA+CGG 0.628569 6.2:+31805800 MS.gene03345:CDS
TGGAAGTGAACATGGGACGC+CGG 0.632005 6.2:-31804272 None:intergenic
TGACGCGGAGCTTCTTCGTG+TGG 0.633589 6.2:-31804310 None:intergenic
TAGGCGAAGCACTAATACGC+GGG 0.640412 6.2:+31805948 MS.gene03345:CDS
CAAAGCTCTTAAATCCAACA+TGG 0.643536 6.2:+31804351 MS.gene03345:CDS
GCAATGCCTTATAATACACC+AGG 0.652456 6.2:+31806106 MS.gene03345:CDS
CGGGACAGTAGCAAGAGATG+TGG 0.659071 6.2:+31805967 MS.gene03345:CDS
CTGATTTGGAGGCAGTGACG+CGG 0.661357 6.2:-31804325 None:intergenic
AAGTTCAACGACGTCTAGAG+GGG 0.663048 6.2:-31804374 None:intergenic
CCTCTACCAGCATTGAAGTG+TGG 0.667371 6.2:-31804549 None:intergenic
GATGGAAATACAATGAAATG+TGG 0.669646 6.2:+31804621 MS.gene03345:CDS
TATGTGCAGTTTCTGCAACA+GGG 0.671046 6.2:+31805924 MS.gene03345:CDS
TACTGAAGATGGGTATTCTG+AGG 0.680447 6.2:+31806147 MS.gene03345:CDS
CTTCCGGTGGAAGTGAACAT+GGG 0.682054 6.2:-31804279 None:intergenic
TGGGCAGTAGCACTACATGG+CGG 0.691397 6.2:+31804247 MS.gene03345:CDS
GCTGCAATGATGGAATTCAA+AGG 0.699018 6.2:+31805989 MS.gene03345:CDS
TCAAAAGCCAAATAAATACG+AGG 0.739579 6.2:-31804711 None:intergenic
ATAGGCGAAGCACTAATACG+CGG 0.787645 6.2:+31805947 MS.gene03345:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATATTAAAGTTTTGTT+TGG - chr6.2:31805087-31805106 None:intergenic 10.0%
!! AGAACTTATAGAAATAATTT+AGG + chr6.2:31804876-31804895 MS.gene03345:intron 15.0%
!! TCATAATAATCATTGTTCAT+AGG + chr6.2:31804506-31804525 MS.gene03345:intron 20.0%
!! TCATGATCATAATATTTATC+CGG + chr6.2:31804411-31804430 MS.gene03345:intron 20.0%
!! TGTAAGTTATTCAATATGAT+AGG - chr6.2:31805669-31805688 None:intergenic 20.0%
!!! AAAAATACATATCTTTTGAG+AGG + chr6.2:31805322-31805341 MS.gene03345:intron 20.0%
!!! AAAGATATGTATTTTTCACA+AGG - chr6.2:31805318-31805337 None:intergenic 20.0%
! AAACATTGAAAGACTAAATC+AGG + chr6.2:31805550-31805569 MS.gene03345:CDS 25.0%
! TAATACTCCTCGTATTTATT+TGG + chr6.2:31804704-31804723 MS.gene03345:CDS 25.0%
! TACTGTAAAAGTTATATACC+TGG - chr6.2:31805595-31805614 None:intergenic 25.0%
! TATTCAATATGATAGGAGAA+GGG - chr6.2:31805662-31805681 None:intergenic 25.0%
! TTATTCAATATGATAGGAGA+AGG - chr6.2:31805663-31805682 None:intergenic 25.0%
! TTTGAACAAAATTCATGACA+AGG + chr6.2:31805366-31805385 MS.gene03345:intron 25.0%
!! AGTTTAGAGCTTATATATCA+TGG + chr6.2:31804960-31804979 MS.gene03345:intron 25.0%
!! TCATGAATTTTGTTCAAACA+AGG - chr6.2:31805364-31805383 None:intergenic 25.0%
!!! TGTTGTTAATGTTGTTTCTT+TGG + chr6.2:31804665-31804684 MS.gene03345:CDS 25.0%
!!! TTTAGTCTTTCAATGTTTTC+TGG - chr6.2:31805548-31805567 None:intergenic 25.0%
AACATTCCTGGTGTATTATA+AGG - chr6.2:31806115-31806134 None:intergenic 30.0%
AATAGAAGCTTCCATTTCAA+CGG - chr6.2:31804598-31804617 None:intergenic 30.0%
AATGTCTTCAATCACGATAA+TGG + chr6.2:31805126-31805145 MS.gene03345:intron 30.0%
ACAAATTCACCAGTAATTCA+AGG - chr6.2:31805429-31805448 None:intergenic 30.0%
AGAATGCTATCAATCAAATG+TGG + chr6.2:31805181-31805200 MS.gene03345:intron 30.0%
ATTATCGTGATTGAAGACAT+TGG - chr6.2:31805127-31805146 None:intergenic 30.0%
ATTCAAAGGTCTTTCTCTAA+AGG + chr6.2:31806003-31806022 MS.gene03345:CDS 30.0%
CATAATATTTATCCGGTCTA+AGG + chr6.2:31804418-31804437 MS.gene03345:intron 30.0%
CTAAGGAACAATTAACTGAA+AGG + chr6.2:31804435-31804454 MS.gene03345:intron 30.0%
GATGGAAATACAATGAAATG+TGG + chr6.2:31804621-31804640 MS.gene03345:CDS 30.0%
TACATTCTTTCTGCATTTAG+AGG - chr6.2:31805265-31805284 None:intergenic 30.0%
TCAAAAGCCAAATAAATACG+AGG - chr6.2:31804714-31804733 None:intergenic 30.0%
TGAAATGGAAGCTTCTATTA+TGG + chr6.2:31804599-31804618 MS.gene03345:CDS 30.0%
! AACAAAATGGTTGGTCAAAT+TGG + chr6.2:31805860-31805879 MS.gene03345:CDS 30.0%
! TTCTGCATTTAAGACATGTT+TGG + chr6.2:31804797-31804816 MS.gene03345:intron 30.0%
!! CATGTTCATAAGTTGTTTTC+AGG + chr6.2:31804900-31804919 MS.gene03345:intron 30.0%
!! TTGGTAGTATCATTTTGGAT+TGG - chr6.2:31805725-31805744 None:intergenic 30.0%
!!! AGTATCATTTTGGATTGGTT+GGG - chr6.2:31805720-31805739 None:intergenic 30.0%
!!! ATCTTGTATCCTTATTTTGC+AGG + chr6.2:31805487-31805506 MS.gene03345:intron 30.0%
!!! CGTATTTATTTGGCTTTTGA+TGG + chr6.2:31804714-31804733 MS.gene03345:CDS 30.0%
!!! TAGTATCATTTTGGATTGGT+TGG - chr6.2:31805721-31805740 None:intergenic 30.0%
!!! TCTTGTATCCTTATTTTGCA+GGG + chr6.2:31805488-31805507 MS.gene03345:intron 30.0%
!!! TGTTTTCTGGAGTAATGAAA+TGG - chr6.2:31805535-31805554 None:intergenic 30.0%
AAACAAGGCCTATCGAATAA+TGG - chr6.2:31805349-31805368 None:intergenic 35.0%
AACTAGTCACCTTGAATTAC+TGG + chr6.2:31805417-31805436 MS.gene03345:intron 35.0%
AATATTCCACACTTCAATGC+TGG + chr6.2:31804543-31804562 MS.gene03345:CDS 35.0%
AGAAACTGCACATAATTCGT+TGG - chr6.2:31805918-31805937 None:intergenic 35.0%
ATCAGGCAAAAGAAGCAAAT+AGG + chr6.2:31805567-31805586 MS.gene03345:CDS 35.0%
ATGGAAGCTTCTATTATGGA+TGG + chr6.2:31804603-31804622 MS.gene03345:CDS 35.0%
CAAAGCTCTTAAATCCAACA+TGG + chr6.2:31804351-31804370 MS.gene03345:CDS 35.0%
CAGTTAATTGTTCCTTAGAC+CGG - chr6.2:31804433-31804452 None:intergenic 35.0%
GAACAAAATTCATGACAAGG+AGG + chr6.2:31805369-31805388 MS.gene03345:intron 35.0%
GAGAAGGGAAAAAACACATT+AGG - chr6.2:31805647-31805666 None:intergenic 35.0%
GATAGTCATCTTGGAACTAT+TGG + chr6.2:31805776-31805795 MS.gene03345:CDS 35.0%
GTTATTTGCATAAGCTCTTG+AGG + chr6.2:31804922-31804941 MS.gene03345:intron 35.0%
TCAGGCAAAAGAAGCAAATA+GGG + chr6.2:31805568-31805587 MS.gene03345:CDS 35.0%
TGACTATCACCATTAGCAAA+TGG - chr6.2:31805764-31805783 None:intergenic 35.0%
! ACAGAAACACCATTTGCTAA+TGG + chr6.2:31805752-31805771 MS.gene03345:CDS 35.0%
! CAGAAGAAAGTGCAAATAGA+CGG - chr6.2:31804471-31804490 None:intergenic 35.0%
! GATTTTGCAAGACAACAAGT+TGG + chr6.2:31804744-31804763 MS.gene03345:intron 35.0%
! GGATTAGTGAACAAAATGGT+TGG + chr6.2:31805851-31805870 MS.gene03345:CDS 35.0%
! TAAGAGCTTTGACACTGATT+TGG - chr6.2:31804342-31804361 None:intergenic 35.0%
!! CAGTCTTGGTAGTATCATTT+TGG - chr6.2:31805730-31805749 None:intergenic 35.0%
!! TGGTGGATTAGTGAACAAAA+TGG + chr6.2:31805847-31805866 MS.gene03345:CDS 35.0%
!!! CTTGTATCCTTATTTTGCAG+GGG + chr6.2:31805489-31805508 MS.gene03345:intron 35.0%
!!! TTGTATCCTTATTTTGCAGG+GGG + chr6.2:31805490-31805509 MS.gene03345:intron 35.0%
AAAAGAAGCAAATAGGGTCC+AGG + chr6.2:31805574-31805593 MS.gene03345:CDS 40.0%
CATGACAAGGAGGATATATG+TGG + chr6.2:31805379-31805398 MS.gene03345:intron 40.0%
CATTTCAACGGTGCCTTTAT+TGG - chr6.2:31804586-31804605 None:intergenic 40.0%
CTTTCTGCATTTAGAGGTCA+GGG - chr6.2:31805259-31805278 None:intergenic 40.0%
GCAATGCCTTATAATACACC+AGG + chr6.2:31806106-31806125 MS.gene03345:CDS 40.0%
GCTAATGGTGATAGTCATCT+TGG + chr6.2:31805767-31805786 MS.gene03345:CDS 40.0%
GGTTCTGTTCTCACCAATAA+AGG + chr6.2:31804570-31804589 MS.gene03345:CDS 40.0%
TACTGAAGATGGGTATTCTG+AGG + chr6.2:31806147-31806166 MS.gene03345:CDS 40.0%
TATGTGCAGTTTCTGCAACA+GGG + chr6.2:31805924-31805943 MS.gene03345:CDS 40.0%
TATGTTCCAACACCTATGAC+TGG - chr6.2:31805893-31805912 None:intergenic 40.0%
TCTTTCTGCATTTAGAGGTC+AGG - chr6.2:31805260-31805279 None:intergenic 40.0%
TGAGAGGTCCATTATTCGAT+AGG + chr6.2:31805338-31805357 MS.gene03345:intron 40.0%
TTATGTGCAGTTTCTGCAAC+AGG + chr6.2:31805923-31805942 MS.gene03345:CDS 40.0%
TTGTTCATAGGTTCGTGAGT+TGG + chr6.2:31804518-31804537 MS.gene03345:intron 40.0%
! AGAAAGTGCAAATAGACGGT+AGG - chr6.2:31804467-31804486 None:intergenic 40.0%
! GCTGCAATGATGGAATTCAA+AGG + chr6.2:31805989-31806008 MS.gene03345:CDS 40.0%
! TGGTGTTTCTGTTTCAGTCT+TGG - chr6.2:31805744-31805763 None:intergenic 40.0%
! TTCTTTGGCTCGTTTGGTTA+TGG + chr6.2:31804680-31804699 MS.gene03345:CDS 40.0%
!! ATGAAATGTGGTGCTGTTTC+AGG + chr6.2:31804633-31804652 MS.gene03345:CDS 40.0%
!! CAATAAAGGCACCGTTGAAA+TGG + chr6.2:31804584-31804603 MS.gene03345:CDS 40.0%
!! TGTGTAGCTGTTGATAGCTA+CGG + chr6.2:31805800-31805819 MS.gene03345:CDS 40.0%
!! TGTTGTTTCTTTGGCTCGTT+TGG + chr6.2:31804674-31804693 MS.gene03345:CDS 40.0%
AAGAGATGTGGCTGCAATGA+TGG + chr6.2:31805979-31805998 MS.gene03345:CDS 45.0%
AAGTTCAACGACGTCTAGAG+GGG - chr6.2:31804377-31804396 None:intergenic 45.0%
ACAAGTTCAACGACGTCTAG+AGG - chr6.2:31804379-31804398 None:intergenic 45.0%
CAAGTTCAACGACGTCTAGA+GGG - chr6.2:31804378-31804397 None:intergenic 45.0%
CTAGCTTCAGCAACATCAAC+TGG + chr6.2:31805827-31805846 MS.gene03345:CDS 45.0%
CTGCGATGTGATCGCAATTA+AGG - chr6.2:31805216-31805235 None:intergenic 45.0%
GTACGTGAGTGCATACCAAA+GGG + chr6.2:31806043-31806062 MS.gene03345:CDS 45.0%
TCTCAACCCCCTGCAAAATA+AGG - chr6.2:31805499-31805518 None:intergenic 45.0%
TGTACGTGAGTGCATACCAA+AGG + chr6.2:31806042-31806061 MS.gene03345:CDS 45.0%
! AGAGCTTGTGCTACTGAAGA+TGG + chr6.2:31806136-31806155 MS.gene03345:CDS 45.0%
! ATAGGCGAAGCACTAATACG+CGG + chr6.2:31805947-31805966 MS.gene03345:CDS 45.0%
! GAGCTTGTGCTACTGAAGAT+GGG + chr6.2:31806137-31806156 MS.gene03345:CDS 45.0%
!! GAGCTTTGACACTGATTTGG+AGG - chr6.2:31804339-31804358 None:intergenic 45.0%
!! GCACAAGCTCTAAACATTCC+TGG - chr6.2:31806127-31806146 None:intergenic 45.0%
!!! TTTGGCTTTTGATGGTGCTG+AGG + chr6.2:31804722-31804741 MS.gene03345:CDS 45.0%
CCACACTTCAATGCTGGTAG+AGG + chr6.2:31804549-31804568 MS.gene03345:CDS 50.0%
CTTCCGGTGGAAGTGAACAT+GGG - chr6.2:31804282-31804301 None:intergenic 50.0%
GCAGTTTCTGCAACAGGGAT+AGG + chr6.2:31805929-31805948 MS.gene03345:CDS 50.0%
GCTTCAGCAACATCAACTGG+TGG + chr6.2:31805830-31805849 MS.gene03345:CDS 50.0%
! CCTCTACCAGCATTGAAGTG+TGG - chr6.2:31804552-31804571 None:intergenic 50.0%
! TAGGCGAAGCACTAATACGC+GGG + chr6.2:31805948-31805967 MS.gene03345:CDS 50.0%
!! TGCATACCAAAGGGCACTGT+TGG + chr6.2:31806052-31806071 MS.gene03345:CDS 50.0%
ACCAAGCCAACAGTGCCCTT+TGG - chr6.2:31806061-31806080 None:intergenic 55.0%
AGCTTCTTCGTGTGGCTGAC+GGG - chr6.2:31804305-31804324 None:intergenic 55.0%
ATTGGCGACACGCCAGTCAT+AGG + chr6.2:31805878-31805897 MS.gene03345:CDS 55.0%
CGGGACAGTAGCAAGAGATG+TGG + chr6.2:31805967-31805986 MS.gene03345:CDS 55.0%
CGTCCCATGTTCACTTCCAC+CGG + chr6.2:31804276-31804295 MS.gene03345:CDS 55.0%
GACACGCCAGTCATAGGTGT+TGG + chr6.2:31805884-31805903 MS.gene03345:CDS 55.0%
GAGCTTCTTCGTGTGGCTGA+CGG - chr6.2:31804306-31804325 None:intergenic 55.0%
GCTTCCGGTGGAAGTGAACA+TGG - chr6.2:31804283-31804302 None:intergenic 55.0%
TGGAAGTGAACATGGGACGC+CGG - chr6.2:31804275-31804294 None:intergenic 55.0%
TGGGCAGTAGCACTACATGG+CGG + chr6.2:31804247-31804266 MS.gene03345:CDS 55.0%
TTGGTTGCTGTGTCTGCTGC+TGG + chr6.2:31806076-31806095 MS.gene03345:CDS 55.0%
!! ACCAAAGGGCACTGTTGGCT+TGG + chr6.2:31806057-31806076 MS.gene03345:CDS 55.0%
!! CTGATTTGGAGGCAGTGACG+CGG - chr6.2:31804328-31804347 None:intergenic 55.0%
GACGTCTAGAGGGGCCATGT+TGG - chr6.2:31804368-31804387 None:intergenic 60.0%
GCCTGGGCAGTAGCACTACA+TGG + chr6.2:31804244-31804263 MS.gene03345:CDS 60.0%
TGACGCGGAGCTTCTTCGTG+TGG - chr6.2:31804313-31804332 None:intergenic 60.0%
! GCCATGTAGTGCTACTGCCC+AGG - chr6.2:31804248-31804267 None:intergenic 60.0%
GTAGCACTACATGGCGGCGC+CGG + chr6.2:31804253-31804272 MS.gene03345:CDS 65.0%
!! TCGTGTGGCTGACGGGCTTC+CGG - chr6.2:31804298-31804317 None:intergenic 65.0%
!! TGTGGCTGACGGGCTTCCGG+TGG - chr6.2:31804295-31804314 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 31804241 31806180 31804241 ID=MS.gene03345
chr6.2 mRNA 31804241 31806180 31804241 ID=MS.gene03345.t1;Parent=MS.gene03345
chr6.2 exon 31804241 31804399 31804241 ID=MS.gene03345.t1.exon1;Parent=MS.gene03345.t1
chr6.2 CDS 31804241 31804399 31804241 ID=cds.MS.gene03345.t1;Parent=MS.gene03345.t1
chr6.2 exon 31804528 31804761 31804528 ID=MS.gene03345.t1.exon2;Parent=MS.gene03345.t1
chr6.2 CDS 31804528 31804761 31804528 ID=cds.MS.gene03345.t1;Parent=MS.gene03345.t1
chr6.2 exon 31805509 31805595 31805509 ID=MS.gene03345.t1.exon3;Parent=MS.gene03345.t1
chr6.2 CDS 31805509 31805595 31805509 ID=cds.MS.gene03345.t1;Parent=MS.gene03345.t1
chr6.2 exon 31805707 31806180 31805707 ID=MS.gene03345.t1.exon4;Parent=MS.gene03345.t1
chr6.2 CDS 31805707 31806180 31805707 ID=cds.MS.gene03345.t1;Parent=MS.gene03345.t1
Gene Sequence

>MS.gene03345

ATGGCCTGGGCAGTAGCACTACATGGCGGCGCCGGCGTCCCATGTTCACTTCCACCGGAAGCCCGTCAGCCACACGAAGAAGCTCCGCGTCACTGCCTCCAAATCAGTGTCAAAGCTCTTAAATCCAACATGGCCCCTCTAGACGTCGTTGAACTTGTTGTATGTATACATCATGATCATAATATTTATCCGGTCTAAGGAACAATTAACTGAAAGGTCTAATCCTACCGTCTATTTGCACTTTCTTCTGTTTTGAATGTGATTCTCATAATAATCATTGTTCATAGGTTCGTGAGTTGGAGAATATTCCACACTTCAATGCTGGTAGAGGTTCTGTTCTCACCAATAAAGGCACCGTTGAAATGGAAGCTTCTATTATGGATGGAAATACAATGAAATGTGGTGCTGTTTCAGGTCTTAGCACTGTTGTTAATGTTGTTTCTTTGGCTCGTTTGGTTATGGATAATACTCCTCGTATTTATTTGGCTTTTGATGGTGCTGAGGATTTTGCAAGACAACAAGTTGGTTTACTGCTTTTCTCAACTCATTTTCAAGTTTCTGCATTTAAGACATGTTTGGATTGATTTATTATTTGAGTTTACTTACTGACGTAATCATTTTAGATATTGTTTGTGAGAACTTATAGAAATAATTTAGGACATGTTCATAAGTTGTTTTCAGGTTATTTGCATAAGCTCTTGAGGATTGTTTATGCAAGCAGTTTAGAGCTTATATATCATGGAGACAGTTTGACTATATGTTATCTCTTGTTGTAGAAATGACTTTTACATAAGCACTTATTGACACACATTTATGTTATAAGCGCTTAATTAAATTATTTATCCAAACAAAACTTTAATATAAATATAACGCTTTACTATAACCAATGTCTTCAATCACGATAATGGTTGCAATCGCGTTGTGAAACTTGATATAGTTGAGAATGCTATCAATCAAATGTGGCTCTTGTTGCCTTAATTGCGATCACATCGCAGTTGCAACAGAGTCGTAAAAACCCTGACCTCTAAATGCAGAAAGAATGTATATAGAAATATATACGTTTCTAGTTTGATACCTTGTGAAAAATACATATCTTTTGAGAGGTCCATTATTCGATAGGCCTTGTTTGAACAAAATTCATGACAAGGAGGATATATGTGGATTTCATTATGAAAAAACTAGTCACCTTGAATTACTGGTGAATTTGTAAATAATGATCATAGTTTGTTGCTCATTTTCATTCATGATCTTGTATCCTTATTTTGCAGGGGGTTGAGACTGTAGATACAAGCCATTTCATTACTCCAGAAAACATTGAAAGACTAAATCAGGCAAAAGAAGCAAATAGGGTCCAGGTATATAACTTTTACAGTACTAGTAGCATATTTATGTCACATTAGTCACCTAATGTGTTTTTTCCCTTCTCCTATCATATTGAATAACTTACATTCTTCACAAATATATAGATTGATTATACCCAACCAATCCAAAATGATACTACCAAGACTGAAACAGAAACACCATTTGCTAATGGTGATAGTCATCTTGGAACTATTGGATGTGTAGCTGTTGATAGCTACGGAAATCTAGCTTCAGCAACATCAACTGGTGGATTAGTGAACAAAATGGTTGGTCAAATTGGCGACACGCCAGTCATAGGTGTTGGAACATATGCCAACGAATTATGTGCAGTTTCTGCAACAGGGATAGGCGAAGCACTAATACGCGGGACAGTAGCAAGAGATGTGGCTGCAATGATGGAATTCAAAGGTCTTTCTCTAAAGGAAGCTGCTGATTGTGTTGTACGTGAGTGCATACCAAAGGGCACTGTTGGCTTGGTTGCTGTGTCTGCTGCTGGAGAAGTTGCAATGCCTTATAATACACCAGGAATGTTTAGAGCTTGTGCTACTGAAGATGGGTATTCTGAGGTTGCAATTTAG
Protein sequence

>MS.gene03345.t1

MAWAVALHGGAGVPCSLPPEARQPHEEAPRHCLQISVKALKSNMAPLDVVELVVRELENIPHFNAGRGSVLTNKGTVEMEASIMDGNTMKCGAVSGLSTVVNVVSLARLVMDNTPRIYLAFDGAEDFARQQGVETVDTSHFITPENIERLNQAKEANRVQIDYTQPIQNDTTKTETETPFANGDSHLGTIGCVAVDSYGNLASATSTGGLVNKMVGQIGDTPVIGVGTYANELCAVSATGIGEALIRGTVARDVAAMMEFKGLSLKEAADCVVRECIPKGTVGLVAVSAAGEVAMPYNTPGMFRACATEDGYSEVAI