Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063515.t1 | XP_013458022.1 | 96 | 325 | 13 | 0 | 1 | 325 | 1 | 325 | 2.10E-173 | 618.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063515.t1 | P50288 | 82.7 | 324 | 48 | 2 | 2 | 320 | 3 | 323 | 4.4e-151 | 535.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063515.t1 | A0A072USJ6 | 96.0 | 325 | 13 | 0 | 1 | 325 | 1 | 325 | 1.5e-173 | 618.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063515 | MS.gene00469 | PPI |
| MS.gene063515 | MS.gene062544 | PPI |
| MS.gene063515 | MS.gene012937 | PPI |
| MS.gene063515 | MS.gene058167 | PPI |
| MS.gene063515 | MS.gene015131 | PPI |
| MS.gene32919 | MS.gene063515 | PPI |
| MS.gene63165 | MS.gene063515 | PPI |
| MS.gene063515 | MS.gene34100 | PPI |
| MS.gene044081 | MS.gene063515 | PPI |
| MS.gene38687 | MS.gene063515 | PPI |
| MS.gene063515 | MS.gene24445 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063515.t1 | MTR_4g109920 | 96.000 | 325 | 13 | 0 | 1 | 325 | 1 | 325 | 0.0 | 642 |
| MS.gene063515.t1 | MTR_4g109900 | 93.846 | 325 | 19 | 1 | 1 | 325 | 1 | 324 | 0.0 | 628 |
| MS.gene063515.t1 | MTR_3g102370 | 60.681 | 323 | 118 | 3 | 2 | 319 | 3 | 321 | 3.27e-134 | 384 |
| MS.gene063515.t1 | MTR_1g094030 | 60.494 | 324 | 117 | 3 | 1 | 319 | 2 | 319 | 2.88e-132 | 379 |
| MS.gene063515.t1 | MTR_1g018760 | 58.824 | 323 | 127 | 2 | 2 | 319 | 3 | 324 | 1.02e-131 | 378 |
| MS.gene063515.t1 | MTR_8g031580 | 30.877 | 285 | 151 | 8 | 5 | 254 | 23 | 296 | 2.29e-26 | 107 |
| MS.gene063515.t1 | MTR_8g031580 | 30.877 | 285 | 151 | 8 | 5 | 254 | 23 | 296 | 6.45e-26 | 107 |
| MS.gene063515.t1 | MTR_3g008180 | 29.921 | 254 | 149 | 10 | 67 | 295 | 77 | 326 | 3.12e-16 | 79.0 |
| MS.gene063515.t1 | MTR_3g008180 | 29.004 | 231 | 135 | 10 | 90 | 295 | 1 | 227 | 2.88e-12 | 66.2 |
| MS.gene063515.t1 | MTR_8g031580 | 27.805 | 205 | 105 | 7 | 85 | 254 | 1 | 197 | 2.08e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063515.t1 | AT5G08100 | 76.324 | 321 | 68 | 1 | 1 | 321 | 2 | 314 | 1.92e-178 | 496 |
| MS.gene063515.t1 | AT3G16150 | 59.443 | 323 | 125 | 2 | 2 | 319 | 3 | 324 | 1.82e-135 | 387 |
| MS.gene063515.t1 | AT5G08100 | 76.446 | 242 | 49 | 1 | 80 | 321 | 1 | 234 | 8.06e-131 | 372 |
| MS.gene063515.t1 | AT4G00590 | 26.113 | 337 | 200 | 9 | 5 | 297 | 15 | 346 | 3.52e-22 | 96.7 |
| MS.gene063515.t1 | AT4G00590 | 25.994 | 327 | 198 | 10 | 5 | 297 | 15 | 331 | 3.65e-18 | 84.7 |
| MS.gene063515.t1 | AT5G61540 | 29.183 | 257 | 150 | 10 | 67 | 295 | 80 | 332 | 8.58e-17 | 80.5 |
| MS.gene063515.t1 | AT5G61540 | 28.632 | 234 | 135 | 10 | 90 | 295 | 1 | 230 | 1.87e-13 | 69.7 |
| MS.gene063515.t1 | AT5G61540 | 28.632 | 234 | 135 | 10 | 90 | 295 | 1 | 230 | 1.87e-13 | 69.7 |
Find 83 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCTTGGTAGGATCATTT+TGG | 0.204412 | 8.4:-17817209 | None:intergenic |
| AACATTCCTGTTGTATTATA+AGG | 0.204789 | 8.4:-17817594 | None:intergenic |
| AAATACGCCTCATATTTATT+TGG | 0.208099 | 8.4:+17816229 | MS.gene063515:CDS |
| CGTTCCGGTGGAAGTGAATA+TGG | 0.211132 | 8.4:-17815685 | None:intergenic |
| TTCTTTGGCTCGTTTGGTTA+TGG | 0.246722 | 8.4:+17816205 | MS.gene063515:CDS |
| TGCCGTTTCTTTGGCTCGTT+TGG | 0.294974 | 8.4:+17816199 | MS.gene063515:CDS |
| ATCAGGCAAAAGAAGCAAAT+AGG | 0.299059 | 8.4:+17817048 | MS.gene063515:CDS |
| TGAGAGCTTTGACACCAATT+TGG | 0.303094 | 8.4:-17815744 | None:intergenic |
| TGTTGTGAATGCCGTTTCTT+TGG | 0.303246 | 8.4:+17816190 | MS.gene063515:CDS |
| GGTATTCTGAGGTTGCAATT+TGG | 0.323714 | 8.4:+17817640 | MS.gene063515:CDS |
| CATTTCAACCGTGCCTTTGT+TGG | 0.327791 | 8.4:-17816108 | None:intergenic |
| TTGGTTGCTGTGTCTGCTGC+TGG | 0.335367 | 8.4:+17817558 | MS.gene063515:CDS |
| CTCCGTCACTGCCTCCAAAT+TGG | 0.364282 | 8.4:+17815730 | MS.gene063515:CDS |
| CAACAAAGGCACGGTTGAAA+TGG | 0.373150 | 8.4:+17816109 | MS.gene063515:CDS |
| GCAGTTTCTGCAACAGGAAA+AGG | 0.373244 | 8.4:+17817411 | MS.gene063515:CDS |
| TGAAATGGAAGCTTCTATAA+TGG | 0.384855 | 8.4:+17816124 | MS.gene063515:CDS |
| TCGCGTGGTTGACGGCGTTC+CGG | 0.399989 | 8.4:-17815700 | None:intergenic |
| ACCAAAGGGTACTGTTGGTT+TGG | 0.402505 | 8.4:+17817539 | MS.gene063515:CDS |
| GAGCTTCTTCGCGTGGTTGA+CGG | 0.403682 | 8.4:-17815708 | None:intergenic |
| ATTCAAAGGTCTTTCTCTAA+AGG | 0.406833 | 8.4:+17817485 | MS.gene063515:CDS |
| ATGAAATGTGGTGCTGTGTC+TGG | 0.412256 | 8.4:+17816158 | MS.gene063515:CDS |
| AGAGCTTGTGCTACTGAAGA+TGG | 0.415599 | 8.4:+17817618 | MS.gene063515:CDS |
| AAATATTGAAAGGCTAAATC+AGG | 0.416374 | 8.4:+17817031 | MS.gene063515:CDS |
| TCAGGCAAAAGAAGCAAATA+GGG | 0.422197 | 8.4:+17817049 | MS.gene063515:CDS |
| CTAGCTTCTGCAACATCAAC+CGG | 0.423930 | 8.4:+17817309 | MS.gene063515:CDS |
| TGGTGTTTCTGTTTCACTCT+TGG | 0.426981 | 8.4:-17817223 | None:intergenic |
| AGAAACTGCACAAAATTCAT+TGG | 0.432061 | 8.4:-17817397 | None:intergenic |
| GTTTCTGTTTCACTCTTGGT+AGG | 0.442883 | 8.4:-17817219 | None:intergenic |
| AACAAGATGGTTGGTCGGAT+TGG | 0.453516 | 8.4:+17817342 | MS.gene063515:CDS |
| CAGTTTCTGCAACAGGAAAA+GGG | 0.454327 | 8.4:+17817412 | MS.gene063515:CDS |
| ATAGCTCTACACGGCGGCGC+CGG | 0.464394 | 8.4:+17815655 | MS.gene063515:CDS |
| GCAATGCCTTATAATACAAC+AGG | 0.464408 | 8.4:+17817588 | MS.gene063515:CDS |
| ATTGGCGACACGCCACTCAT+AGG | 0.473650 | 8.4:+17817360 | MS.gene063515:CDS |
| TCAAAAGCCAAATAAATATG+AGG | 0.487507 | 8.4:-17816236 | None:intergenic |
| ACAGAAACACCAGTTGCTAA+TGG | 0.490461 | 8.4:+17817234 | MS.gene063515:CDS |
| CCACACTTCAATGCTGGTAG+AGG | 0.496753 | 8.4:+17816074 | MS.gene063515:CDS |
| TGACTATCACCATTAGCAAC+TGG | 0.501796 | 8.4:-17817243 | None:intergenic |
| AAGAGATGTGGCTGCAATGA+TGG | 0.524648 | 8.4:+17817461 | MS.gene063515:CDS |
| GTTCCGGTGGAAGTGAATAT+GGG | 0.527909 | 8.4:-17815684 | None:intergenic |
| CACCAATTTGGAGGCAGTGA+CGG | 0.530368 | 8.4:-17815732 | None:intergenic |
| ACCAAACCAACAGTACCCTT+TGG | 0.530829 | 8.4:-17817540 | None:intergenic |
| TTGTTCATAGGTTCGTGAGT+TGG | 0.541945 | 8.4:+17816043 | MS.gene063515:intron |
| ATGGAAGCTTCTATAATGGA+TGG | 0.542192 | 8.4:+17816128 | MS.gene063515:CDS |
| CAAGTTCAACGACGTCTAGA+GGG | 0.545254 | 8.4:-17815780 | None:intergenic |
| GACACGCCACTCATAGGTGC+TGG | 0.548340 | 8.4:+17817366 | MS.gene063515:CDS |
| GAGCTTTGACACCAATTTGG+AGG | 0.548680 | 8.4:-17815741 | None:intergenic |
| TGTGTAGCTGTTGATAGTAA+TGG | 0.549412 | 8.4:+17817282 | MS.gene063515:CDS |
| CGTGGTTGACGGCGTTCCGG+TGG | 0.549993 | 8.4:-17815697 | None:intergenic |
| AACCAAACGAGCCAAAGAAA+CGG | 0.550876 | 8.4:-17816201 | None:intergenic |
| AATATTCCACACTTCAATGC+TGG | 0.552223 | 8.4:+17816068 | MS.gene063515:CDS |
| GAGCTTGTGCTACTGAAGAT+GGG | 0.553483 | 8.4:+17817619 | MS.gene063515:CDS |
| CATCTTGTTCACTAATCCAC+CGG | 0.557068 | 8.4:-17817328 | None:intergenic |
| AAAAGAAGCAAATAGGGTCC+AGG | 0.568354 | 8.4:+17817055 | MS.gene063515:CDS |
| GATAGTCAACTCGGAACTGT+TGG | 0.571797 | 8.4:+17817258 | MS.gene063515:CDS |
| GTACATGAGCGTACACCAAA+GGG | 0.575777 | 8.4:+17817525 | MS.gene063515:CDS |
| TTACTCCAGAAAATATTGAA+AGG | 0.577051 | 8.4:+17817021 | MS.gene063515:CDS |
| CGTACACCAAAGGGTACTGT+TGG | 0.579848 | 8.4:+17817534 | MS.gene063515:CDS |
| GGATTAGTGAACAAGATGGT+TGG | 0.581947 | 8.4:+17817333 | MS.gene063515:CDS |
| GACGTCTAGAGGGGCCATGT+TGG | 0.581967 | 8.4:-17815770 | None:intergenic |
| ACAAGTTCAACGACGTCTAG+AGG | 0.588579 | 8.4:-17815781 | None:intergenic |
| CATCCCATATTCACTTCCAC+CGG | 0.593610 | 8.4:+17815681 | MS.gene063515:CDS |
| TAGTGAACAAGATGGTTGGT+CGG | 0.597556 | 8.4:+17817337 | MS.gene063515:CDS |
| AAAGGGGAAGCAATAATTCG+CGG | 0.605090 | 8.4:+17817429 | MS.gene063515:CDS |
| AAGGGGAAGCAATAATTCGC+GGG | 0.607132 | 8.4:+17817430 | MS.gene063515:CDS |
| GGTTCTGTTCTTACCAACAA+AGG | 0.614531 | 8.4:+17816095 | MS.gene063515:CDS |
| TGACGGAGAGCTTCTTCGCG+TGG | 0.615307 | 8.4:-17815715 | None:intergenic |
| TGTACATGAGCGTACACCAA+AGG | 0.621099 | 8.4:+17817524 | MS.gene063515:CDS |
| CAAAGCTCTCAAATCCAACA+TGG | 0.626979 | 8.4:+17815756 | MS.gene063515:CDS |
| AGTTTCTGCAACAGGAAAAG+GGG | 0.641278 | 8.4:+17817413 | MS.gene063515:CDS |
| CGGTGGATTAGTGAACAAGA+TGG | 0.646608 | 8.4:+17817329 | MS.gene063515:CDS |
| TATGTTCCAGCACCTATGAG+TGG | 0.651676 | 8.4:-17817372 | None:intergenic |
| CGGGACAGTAGCAAGAGATG+TGG | 0.652039 | 8.4:+17817449 | MS.gene063515:CDS |
| GCTAATGGTGATAGTCAACT+CGG | 0.652387 | 8.4:+17817249 | MS.gene063515:CDS |
| AAGTGAATATGGGATGTCGC+CGG | 0.653946 | 8.4:-17815674 | None:intergenic |
| TGTTCTTACCAACAAAGGCA+CGG | 0.657835 | 8.4:+17816100 | MS.gene063515:CDS |
| AAGTTCAACGACGTCTAGAG+GGG | 0.663048 | 8.4:-17815779 | None:intergenic |
| GATGGAAATACTATGAAATG+TGG | 0.663282 | 8.4:+17816146 | MS.gene063515:CDS |
| GCTTCTGCAACATCAACCGG+TGG | 0.666858 | 8.4:+17817312 | MS.gene063515:CDS |
| CCTCTACCAGCATTGAAGTG+TGG | 0.667371 | 8.4:-17816074 | None:intergenic |
| TACTGAAGATGGGTATTCTG+AGG | 0.680447 | 8.4:+17817629 | MS.gene063515:CDS |
| GCTGCAATGATGGAATTCAA+AGG | 0.699018 | 8.4:+17817471 | MS.gene063515:CDS |
| GGTTGGGCAATAGCTCTACA+CGG | 0.703748 | 8.4:+17815646 | MS.gene063515:CDS |
| TGGGCAATAGCTCTACACGG+CGG | 0.798330 | 8.4:+17815649 | MS.gene063515:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAACTTATAGAAATAATTT+AGG | + | chr8.4:17816401-17816420 | MS.gene063515:intron | 15.0% |
| !! | TTATAATAATCATTGTTCAT+AGG | + | chr8.4:17816031-17816050 | MS.gene063515:intron | 15.0% |
| !! | TTTAATGTAATTATATGTGT+TGG | - | chr8.4:17815895-17815914 | None:intergenic | 15.0% |
| !!! | AAAGATATTTATTTTTCACA+AGG | - | chr8.4:17816840-17816859 | None:intergenic | 15.0% |
| !!! | CATTATATTAAAGTTTTGTT+TGG | - | chr8.4:17816612-17816631 | None:intergenic | 15.0% |
| !! | AATCAATCTATATATTTGTG+AGG | - | chr8.4:17817176-17817195 | None:intergenic | 20.0% |
| !! | ATACGTAAATTCAATATCAT+AGG | - | chr8.4:17817150-17817169 | None:intergenic | 20.0% |
| !! | TAAATAATGATCATAGTTTG+TGG | + | chr8.4:17816929-17816948 | MS.gene063515:intron | 20.0% |
| !!! | AGTTTAGAGCTTATATATTA+TGG | + | chr8.4:17816485-17816504 | MS.gene063515:intron | 20.0% |
| ! | AAATACGCCTCATATTTATT+TGG | + | chr8.4:17816229-17816248 | MS.gene063515:CDS | 25.0% |
| ! | AAATATTGAAAGGCTAAATC+AGG | + | chr8.4:17817031-17817050 | MS.gene063515:CDS | 25.0% |
| ! | AAATTCAATATCATAGGAGA+AGG | - | chr8.4:17817144-17817163 | None:intergenic | 25.0% |
| ! | AACATTCCTGTTGTATTATA+AGG | - | chr8.4:17817597-17817616 | None:intergenic | 25.0% |
| ! | AATTCAATATCATAGGAGAA+GGG | - | chr8.4:17817143-17817162 | None:intergenic | 25.0% |
| ! | AGAGAAGTTCATTATTCAAT+AGG | + | chr8.4:17816860-17816879 | MS.gene063515:intron | 25.0% |
| ! | ATACATTCTTTCTGCATTTA+AGG | - | chr8.4:17816787-17816806 | None:intergenic | 25.0% |
| ! | TACATTCTTTCTGCATTTAA+GGG | - | chr8.4:17816786-17816805 | None:intergenic | 25.0% |
| ! | TCAAAAGCCAAATAAATATG+AGG | - | chr8.4:17816239-17816258 | None:intergenic | 25.0% |
| ! | TTACTCCAGAAAATATTGAA+AGG | + | chr8.4:17817021-17817040 | MS.gene063515:CDS | 25.0% |
| ! | TTCTATGAAAGTTATATACC+TGG | - | chr8.4:17817076-17817095 | None:intergenic | 25.0% |
| !!! | CATATTTATTTGGCTTTTGA+TGG | + | chr8.4:17816239-17816258 | MS.gene063515:CDS | 25.0% |
| !!! | TATTTTCTGGAGTAATGAAA+TGG | - | chr8.4:17817016-17817035 | None:intergenic | 25.0% |
| !!! | TTTAGCCTTTCAATATTTTC+TGG | - | chr8.4:17817029-17817048 | None:intergenic | 25.0% |
| AATGTCTTCAATCACTATAC+TGG | + | chr8.4:17816645-17816664 | MS.gene063515:intron | 30.0% | |
| ACAAATTCACCAGTAATTCA+AGG | - | chr8.4:17816910-17816929 | None:intergenic | 30.0% | |
| AGAAACTGCACAAAATTCAT+TGG | - | chr8.4:17817400-17817419 | None:intergenic | 30.0% | |
| AGAATGCGATTAATCAAATG+TGG | + | chr8.4:17816700-17816719 | MS.gene063515:intron | 30.0% | |
| AGTATAGTGATTGAAGACAT+TGG | - | chr8.4:17816646-17816665 | None:intergenic | 30.0% | |
| ATTCAAAGGTCTTTCTCTAA+AGG | + | chr8.4:17817485-17817504 | MS.gene063515:CDS | 30.0% | |
| GAGAAGGGAAAAAATACATA+AGG | - | chr8.4:17817128-17817147 | None:intergenic | 30.0% | |
| GAGCTTATATATTATGGAGA+CGG | + | chr8.4:17816491-17816510 | MS.gene063515:intron | 30.0% | |
| GATGGAAATACTATGAAATG+TGG | + | chr8.4:17816146-17816165 | MS.gene063515:CDS | 30.0% | |
| TGAAATGGAAGCTTCTATAA+TGG | + | chr8.4:17816124-17816143 | MS.gene063515:CDS | 30.0% | |
| ! | TCTAAAATGATTACGACAGT+AGG | - | chr8.4:17816370-17816389 | None:intergenic | 30.0% |
| ! | TTCTGCATTTAAGACATGTT+TGG | + | chr8.4:17816322-17816341 | MS.gene063515:intron | 30.0% |
| !! | CATGTTCATAAGTTGTTTTC+AGG | + | chr8.4:17816425-17816444 | MS.gene063515:intron | 30.0% |
| AAACAATCCTGAAGAGCTTA+TGG | - | chr8.4:17816457-17816476 | None:intergenic | 35.0% | |
| AACTAGTCACCTTGAATTAC+TGG | + | chr8.4:17816898-17816917 | MS.gene063515:intron | 35.0% | |
| AATATTCCACACTTCAATGC+TGG | + | chr8.4:17816068-17816087 | MS.gene063515:CDS | 35.0% | |
| ATCAGGCAAAAGAAGCAAAT+AGG | + | chr8.4:17817048-17817067 | MS.gene063515:CDS | 35.0% | |
| GCAATGCCTTATAATACAAC+AGG | + | chr8.4:17817588-17817607 | MS.gene063515:CDS | 35.0% | |
| TCAGGCAAAAGAAGCAAATA+GGG | + | chr8.4:17817049-17817068 | MS.gene063515:CDS | 35.0% | |
| TTAATCAAATGTGGCTCATG+TGG | + | chr8.4:17816709-17816728 | MS.gene063515:intron | 35.0% | |
| ! | ATGGAAGCTTCTATAATGGA+TGG | + | chr8.4:17816128-17816147 | MS.gene063515:CDS | 35.0% |
| ! | GATTTTGCAAGACAACAAGT+TGG | + | chr8.4:17816269-17816288 | MS.gene063515:intron | 35.0% |
| ! | GTTATTTCCATAAGCTCTTC+AGG | + | chr8.4:17816447-17816466 | MS.gene063515:intron | 35.0% |
| ! | TTGGTAGGATCATTTTGGAT+TGG | - | chr8.4:17817207-17817226 | None:intergenic | 35.0% |
| !! | TGTGTAGCTGTTGATAGTAA+TGG | + | chr8.4:17817282-17817301 | MS.gene063515:CDS | 35.0% |
| !!! | AGGATCATTTTGGATTGGTT+GGG | - | chr8.4:17817202-17817221 | None:intergenic | 35.0% |
| !!! | ATCATGTAGCCTTATTTTGC+AGG | + | chr8.4:17816968-17816987 | MS.gene063515:intron | 35.0% |
| !!! | TAGGATCATTTTGGATTGGT+TGG | - | chr8.4:17817203-17817222 | None:intergenic | 35.0% |
| !!! | TCATGTAGCCTTATTTTGCA+GGG | + | chr8.4:17816969-17816988 | MS.gene063515:intron | 35.0% |
| AAAAGAAGCAAATAGGGTCC+AGG | + | chr8.4:17817055-17817074 | MS.gene063515:CDS | 40.0% | |
| AAAGGGGAAGCAATAATTCG+CGG | + | chr8.4:17817429-17817448 | MS.gene063515:CDS | 40.0% | |
| AACCAAACGAGCCAAAGAAA+CGG | - | chr8.4:17816204-17816223 | None:intergenic | 40.0% | |
| ACAGAAACACCAGTTGCTAA+TGG | + | chr8.4:17817234-17817253 | MS.gene063515:CDS | 40.0% | |
| AGTTTCTGCAACAGGAAAAG+GGG | + | chr8.4:17817413-17817432 | MS.gene063515:CDS | 40.0% | |
| CAAAGCTCTCAAATCCAACA+TGG | + | chr8.4:17815756-17815775 | MS.gene063515:CDS | 40.0% | |
| CAGAAGAGAGCTATGAAACA+TGG | - | chr8.4:17815989-17816008 | None:intergenic | 40.0% | |
| CAGTTTCTGCAACAGGAAAA+GGG | + | chr8.4:17817412-17817431 | MS.gene063515:CDS | 40.0% | |
| CATCTTGTTCACTAATCCAC+CGG | - | chr8.4:17817331-17817350 | None:intergenic | 40.0% | |
| CTTTCTGCATTTAAGGGTCA+GGG | - | chr8.4:17816780-17816799 | None:intergenic | 40.0% | |
| GCTAATGGTGATAGTCAACT+CGG | + | chr8.4:17817249-17817268 | MS.gene063515:CDS | 40.0% | |
| GGTTCTGTTCTTACCAACAA+AGG | + | chr8.4:17816095-17816114 | MS.gene063515:CDS | 40.0% | |
| GTTTCTGTTTCACTCTTGGT+AGG | - | chr8.4:17817222-17817241 | None:intergenic | 40.0% | |
| TACTGAAGATGGGTATTCTG+AGG | + | chr8.4:17817629-17817648 | MS.gene063515:CDS | 40.0% | |
| TAGTGAACAAGATGGTTGGT+CGG | + | chr8.4:17817337-17817356 | MS.gene063515:CDS | 40.0% | |
| TCTTTCTGCATTTAAGGGTC+AGG | - | chr8.4:17816781-17816800 | None:intergenic | 40.0% | |
| TGACTATCACCATTAGCAAC+TGG | - | chr8.4:17817246-17817265 | None:intergenic | 40.0% | |
| TGTTCTTACCAACAAAGGCA+CGG | + | chr8.4:17816100-17816119 | MS.gene063515:CDS | 40.0% | |
| TTGTTCATAGGTTCGTGAGT+TGG | + | chr8.4:17816043-17816062 | MS.gene063515:intron | 40.0% | |
| ! | CACTCTTGGTAGGATCATTT+TGG | - | chr8.4:17817212-17817231 | None:intergenic | 40.0% |
| ! | GCTGCAATGATGGAATTCAA+AGG | + | chr8.4:17817471-17817490 | MS.gene063515:CDS | 40.0% |
| ! | GGATTAGTGAACAAGATGGT+TGG | + | chr8.4:17817333-17817352 | MS.gene063515:CDS | 40.0% |
| ! | TGAGAGCTTTGACACCAATT+TGG | - | chr8.4:17815747-17815766 | None:intergenic | 40.0% |
| ! | TGGTGTTTCTGTTTCACTCT+TGG | - | chr8.4:17817226-17817245 | None:intergenic | 40.0% |
| ! | TGTTGTGAATGCCGTTTCTT+TGG | + | chr8.4:17816190-17816209 | MS.gene063515:CDS | 40.0% |
| ! | TTCTTTGGCTCGTTTGGTTA+TGG | + | chr8.4:17816205-17816224 | MS.gene063515:CDS | 40.0% |
| ! | TTTTGTGCAGTTTCTGCAAC+AGG | + | chr8.4:17817405-17817424 | MS.gene063515:CDS | 40.0% |
| !! | GGTATTCTGAGGTTGCAATT+TGG | + | chr8.4:17817640-17817659 | MS.gene063515:CDS | 40.0% |
| !! | TATATGTGTTGGTGTCGTGT+CGG | - | chr8.4:17815884-17815903 | None:intergenic | 40.0% |
| !!! | ATGTAGCCTTATTTTGCAGG+GGG | + | chr8.4:17816971-17816990 | MS.gene063515:intron | 40.0% |
| !!! | CATGTAGCCTTATTTTGCAG+GGG | + | chr8.4:17816970-17816989 | MS.gene063515:intron | 40.0% |
| AAGAGATGTGGCTGCAATGA+TGG | + | chr8.4:17817461-17817480 | MS.gene063515:CDS | 45.0% | |
| AAGGGGAAGCAATAATTCGC+GGG | + | chr8.4:17817430-17817449 | MS.gene063515:CDS | 45.0% | |
| AAGTGAATATGGGATGTCGC+CGG | - | chr8.4:17815677-17815696 | None:intergenic | 45.0% | |
| AAGTTCAACGACGTCTAGAG+GGG | - | chr8.4:17815782-17815801 | None:intergenic | 45.0% | |
| ACAAGTTCAACGACGTCTAG+AGG | - | chr8.4:17815784-17815803 | None:intergenic | 45.0% | |
| ACCAAACCAACAGTACCCTT+TGG | - | chr8.4:17817543-17817562 | None:intergenic | 45.0% | |
| CAAGTTCAACGACGTCTAGA+GGG | - | chr8.4:17815783-17815802 | None:intergenic | 45.0% | |
| CATCCCATATTCACTTCCAC+CGG | + | chr8.4:17815681-17815700 | MS.gene063515:CDS | 45.0% | |
| CATTTCAACCGTGCCTTTGT+TGG | - | chr8.4:17816111-17816130 | None:intergenic | 45.0% | |
| CTAGCTTCTGCAACATCAAC+CGG | + | chr8.4:17817309-17817328 | MS.gene063515:CDS | 45.0% | |
| CTGCGATGTGATCGCAATTA+AGG | - | chr8.4:17816735-17816754 | None:intergenic | 45.0% | |
| GATAGTCAACTCGGAACTGT+TGG | + | chr8.4:17817258-17817277 | MS.gene063515:CDS | 45.0% | |
| GCACAAACACTCCACAGTTT+AGG | + | chr8.4:17815843-17815862 | MS.gene063515:intron | 45.0% | |
| GCAGTTTCTGCAACAGGAAA+AGG | + | chr8.4:17817411-17817430 | MS.gene063515:CDS | 45.0% | |
| GTACATGAGCGTACACCAAA+GGG | + | chr8.4:17817525-17817544 | MS.gene063515:CDS | 45.0% | |
| GTTCCGGTGGAAGTGAATAT+GGG | - | chr8.4:17815687-17815706 | None:intergenic | 45.0% | |
| TATGTTCCAGCACCTATGAG+TGG | - | chr8.4:17817375-17817394 | None:intergenic | 45.0% | |
| TCTCAACCCCCTGCAAAATA+AGG | - | chr8.4:17816980-17816999 | None:intergenic | 45.0% | |
| TGTACATGAGCGTACACCAA+AGG | + | chr8.4:17817524-17817543 | MS.gene063515:CDS | 45.0% | |
| ! | AACAAGATGGTTGGTCGGAT+TGG | + | chr8.4:17817342-17817361 | MS.gene063515:CDS | 45.0% |
| ! | AGAGCTTGTGCTACTGAAGA+TGG | + | chr8.4:17817618-17817637 | MS.gene063515:CDS | 45.0% |
| ! | CAACAAAGGCACGGTTGAAA+TGG | + | chr8.4:17816109-17816128 | MS.gene063515:CDS | 45.0% |
| ! | GAGCTTGTGCTACTGAAGAT+GGG | + | chr8.4:17817619-17817638 | MS.gene063515:CDS | 45.0% |
| ! | GAGCTTTGACACCAATTTGG+AGG | - | chr8.4:17815744-17815763 | None:intergenic | 45.0% |
| !! | ACCAAAGGGTACTGTTGGTT+TGG | + | chr8.4:17817539-17817558 | MS.gene063515:CDS | 45.0% |
| !! | ATGAAATGTGGTGCTGTGTC+TGG | + | chr8.4:17816158-17816177 | MS.gene063515:CDS | 45.0% |
| !! | CGGTGGATTAGTGAACAAGA+TGG | + | chr8.4:17817329-17817348 | MS.gene063515:CDS | 45.0% |
| !!! | TTTGGCTTTTGATGGTGCTG+AGG | + | chr8.4:17816247-17816266 | MS.gene063515:CDS | 45.0% |
| CACCAATTTGGAGGCAGTGA+CGG | - | chr8.4:17815735-17815754 | None:intergenic | 50.0% | |
| CCACACTTCAATGCTGGTAG+AGG | + | chr8.4:17816074-17816093 | MS.gene063515:CDS | 50.0% | |
| CGTTCCGGTGGAAGTGAATA+TGG | - | chr8.4:17815688-17815707 | None:intergenic | 50.0% | |
| GTCACTGTTCATGTCGTGTC+TGG | + | chr8.4:17815952-17815971 | MS.gene063515:intron | 50.0% | |
| TCCACAGTTTAGGCTTGTCC+CGG | + | chr8.4:17815853-17815872 | MS.gene063515:intron | 50.0% | |
| ! | CCTCTACCAGCATTGAAGTG+TGG | - | chr8.4:17816077-17816096 | None:intergenic | 50.0% |
| ! | GGTTGGGCAATAGCTCTACA+CGG | + | chr8.4:17815646-17815665 | MS.gene063515:CDS | 50.0% |
| ! | TGCCGTTTCTTTGGCTCGTT+TGG | + | chr8.4:17816199-17816218 | MS.gene063515:CDS | 50.0% |
| !! | CGTACACCAAAGGGTACTGT+TGG | + | chr8.4:17817534-17817553 | MS.gene063515:CDS | 50.0% |
| ACCGGGACAAGCCTAAACTG+TGG | - | chr8.4:17815857-17815876 | None:intergenic | 55.0% | |
| ATTGGCGACACGCCACTCAT+AGG | + | chr8.4:17817360-17817379 | MS.gene063515:CDS | 55.0% | |
| CGGGACAGTAGCAAGAGATG+TGG | + | chr8.4:17817449-17817468 | MS.gene063515:CDS | 55.0% | |
| CTCCGTCACTGCCTCCAAAT+TGG | + | chr8.4:17815730-17815749 | MS.gene063515:CDS | 55.0% | |
| GAGCTTCTTCGCGTGGTTGA+CGG | - | chr8.4:17815711-17815730 | None:intergenic | 55.0% | |
| GCTTCTGCAACATCAACCGG+TGG | + | chr8.4:17817312-17817331 | MS.gene063515:CDS | 55.0% | |
| TTGGTTGCTGTGTCTGCTGC+TGG | + | chr8.4:17817558-17817577 | MS.gene063515:CDS | 55.0% | |
| ! | TGGGCAATAGCTCTACACGG+CGG | + | chr8.4:17815649-17815668 | MS.gene063515:CDS | 55.0% |
| GACACGCCACTCATAGGTGC+TGG | + | chr8.4:17817366-17817385 | MS.gene063515:CDS | 60.0% | |
| GACGTCTAGAGGGGCCATGT+TGG | - | chr8.4:17815773-17815792 | None:intergenic | 60.0% | |
| TGACGGAGAGCTTCTTCGCG+TGG | - | chr8.4:17815718-17815737 | None:intergenic | 60.0% | |
| !! | TGGTGTCGTGTCGGTGTCAC+CGG | - | chr8.4:17815875-17815894 | None:intergenic | 60.0% |
| TCGCGTGGTTGACGGCGTTC+CGG | - | chr8.4:17815703-17815722 | None:intergenic | 65.0% | |
| ! | ATAGCTCTACACGGCGGCGC+CGG | + | chr8.4:17815655-17815674 | MS.gene063515:CDS | 65.0% |
| !! | GGTGTCGTGTCGGTGTCACC+GGG | - | chr8.4:17815874-17815893 | None:intergenic | 65.0% |
| CGTGGTTGACGGCGTTCCGG+TGG | - | chr8.4:17815700-17815719 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 17815643 | 17817683 | 17815643 | ID=MS.gene063515 |
| chr8.4 | mRNA | 17815643 | 17817683 | 17815643 | ID=MS.gene063515.t1;Parent=MS.gene063515 |
| chr8.4 | exon | 17815643 | 17815804 | 17815643 | ID=MS.gene063515.t1.exon1;Parent=MS.gene063515.t1 |
| chr8.4 | CDS | 17815643 | 17815804 | 17815643 | ID=cds.MS.gene063515.t1;Parent=MS.gene063515.t1 |
| chr8.4 | exon | 17816053 | 17816286 | 17816053 | ID=MS.gene063515.t1.exon2;Parent=MS.gene063515.t1 |
| chr8.4 | CDS | 17816053 | 17816286 | 17816053 | ID=cds.MS.gene063515.t1;Parent=MS.gene063515.t1 |
| chr8.4 | exon | 17816990 | 17817076 | 17816990 | ID=MS.gene063515.t1.exon3;Parent=MS.gene063515.t1 |
| chr8.4 | CDS | 17816990 | 17817076 | 17816990 | ID=cds.MS.gene063515.t1;Parent=MS.gene063515.t1 |
| chr8.4 | exon | 17817189 | 17817683 | 17817189 | ID=MS.gene063515.t1.exon4;Parent=MS.gene063515.t1 |
| chr8.4 | CDS | 17817189 | 17817683 | 17817189 | ID=cds.MS.gene063515.t1;Parent=MS.gene063515.t1 |
| Gene Sequence |
| Protein sequence |
